Citrus Sinensis ID: 000540
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.954 | 0.953 | 0.718 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.968 | 0.975 | 0.683 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.952 | 0.950 | 0.706 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.967 | 0.951 | 0.700 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.967 | 0.951 | 0.700 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.969 | 0.957 | 0.674 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.965 | 0.957 | 0.680 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.963 | 0.958 | 0.684 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.965 | 0.944 | 0.683 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.953 | 0.930 | 0.673 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2139 bits (5543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1387 (71%), Positives = 1168/1387 (84%), Gaps = 19/1387 (1%)
Query: 17 SISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNL 76
S S WR + + FSRSSR+EDDEEALKWAA+EKLPT++RL+KGLL S+G A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGIDLP +EVRYEHLNI+A+AY+ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLL 196
LP+F F T+ E LN LHIL SRK+ LTILKD+SGIIKP R+TLLLGPP+SGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLD +LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316
G+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+CADT+V
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGT 376
GD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLS+G IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEV 496
TSKKDQ+QYW + PYRF+T +EF E +QSFHVG+K+ DEL TPFDK+K H AALT E
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGI 556
YG G++ELLK C RELLLMKRNSFVY+FK Q+ +AL+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEV 616
YAGALFF +M+MFNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +EV
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALL 676
+WV LTYYVIG DPN RF KQ+ LL+ NQMAS +FR I A GR M VA+TFGSFALL
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQV 736
+ F+LGGFVLSR+D+K WW W YW SP+ Y+ N+I+ NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDST 796
+KSRGFF AYW+W+G+GAL GF ++FN ++LAL +LN +KP+A+L E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSV 856
G T + G+ I E S K+GMVLPFEPHS+TFD+VVYSV
Sbjct: 803 -GEVSSQITSTDGGDSISE---------------SQNNKKGMVLPFEPHSITFDDVVYSV 846
Query: 857 DMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 916
DMPQ+MK QG +D+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 847 DMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDG 906
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
IK+SGYPKKQETFARISGYCEQNDIHSP+VTVYESL+YSAWLRLP ++D +TRKMF+ E
Sbjct: 907 EIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDE 966
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 967 VMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1026
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFE 1096
VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGRHSCHL+ YFE
Sbjct: 1027 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFE 1086
Query: 1097 AIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPG 1156
+ PGV KIK+GYNPATWMLEV+A +QE+ LG+DF+++YK S+LYRRNK+LI +L P PG
Sbjct: 1087 SNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPG 1146
Query: 1157 SKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGK 1216
SKDLHF QYSQS +TQ +ACLWKQHWSYWRNPAYTAVRF FTTFIAL+ G++FWDLG K
Sbjct: 1147 SKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTK 1206
Query: 1217 TEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVM 1276
K QDLLNAMGSM+ A++FLG+Q SSVQP+V++ERTVFYRE+AAGMYS IP+A QV
Sbjct: 1207 VSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVS 1266
Query: 1277 IEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHI 1336
IEIPYIFVQS+ Y IVYAM+ F+W KFFWY+F M+ TLL+FTFYGM+ VA+TPN ++
Sbjct: 1267 IEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNV 1326
Query: 1337 AAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKMESG 1396
A+IV+ FYG+WN+FSGFIIPRPR+PVWWRWYYWANP+AWTLYGL+ASQFGD++ K+
Sbjct: 1327 ASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDN 1386
Query: 1397 ETVKHFL 1403
ETV+ FL
Sbjct: 1387 ETVEQFL 1393
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2063 bits (5346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 976/1428 (68%), Positives = 1168/1428 (81%), Gaps = 40/1428 (2%)
Query: 1 MEGNNDIYMASTSLPRSISRWRTSS-MGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKG 59
MEG + + AS S+ R+ S W+ S FSRSSREEDDEEAL+WAA+EKLPT++RL+KG
Sbjct: 1 MEGTS-FHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKV 117
+LT S G E+D+ LG Q+ ++L+ +L+ V + ++EK L KLK RI+RVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKP 177
EVR++HL +EAE ++ +ALP+F F ++ + FLN LH++P+RK+ TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH 237
GR+ LLLGPP+SGKTTLLLALAGKLD LK +GRVTYNGH M+EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADT+VGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFE 417
TT+QIVN + +HI GTA+ISLLQPAPET+NLFDDIIL++ G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTSKKDQ QYW ++ PYRF+ V+EF E FQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVY 537
L PFDK+KSH AALTT+ YG G +EL+K SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFFRT+M K + DG +Y GALFF +M+MFNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY LL+ NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFL 717
AA GRNM+VANTFG+FA+LV F+LGG VLSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRL 777
GHSW + NS E+LGV LKSRGF HAYW+W+G GAL GFV+LFN GFTLALTFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRG 837
KP+A++ EE S+E + S+ S + EA + KKRG
Sbjct: 780 GKPQAVIAEEPASDETEL----------------------QSARSEGVVEAGAN--KKRG 815
Query: 838 MVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TFD VVYSVDMPQ+M QG +D+LVLL GV+GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 898 KTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVLAGRKTGGYI GNI +SGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLP E+D RK+FI EVMELVEL PL+Q+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1078 EIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRS 1137
EIYVGPLG S HL++YFE+I G+ KI +GYNPATWMLEVS SQE ALGVDF+ +YK S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1138 ELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFF 1197
ELY+RNK LI++LS+PAPGSKDL+F QYSQS TQ +A LWKQHWSYWRNP YTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1198 FTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFY 1257
FT IAL+ G++FWDLGGKT+ RQDL NAMGSM+TA++FLG+Q +SVQP+V+VERTVFY
Sbjct: 1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFY 1235
Query: 1258 REKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTL 1317
RE+AAGMYS +P+A AQV IEIPY+ VQ++VY IVYAM+ F+WTA KFFWY+FFMY +
Sbjct: 1236 REQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSF 1295
Query: 1318 LFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWT 1377
L FTFYGM+ VA+TPNHHIA++VS+ FYGIWN+FSGF+IPRP +PVWW WYYW P+AWT
Sbjct: 1296 LTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWT 1355
Query: 1378 LYGLIASQFGDMEDKM-ESGETVKH-----------FLEIISILNMIF 1413
LYGLIASQFGD+ + M +S +VK FL +++ +N+IF
Sbjct: 1356 LYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIF 1403
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2041 bits (5287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1388 (70%), Positives = 1176/1388 (84%), Gaps = 23/1388 (1%)
Query: 17 SISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNL 76
S S WR + FSRS+R+EDDEEALKWAA+EKLPTY+RL+KG+L S+G A EVDV +
Sbjct: 30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDS 89
Query: 77 GPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKA 136
G ER+ L+ +LV V + DNEKFLLKLKNRI+RVGID P +EVR+EHLNI+A+AY+ S+A
Sbjct: 90 GVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRA 149
Query: 137 LPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLL 196
LP+FT F ++ EG L+ +HILPS+K+ +TILKDVSGI+KP R+TLLLGPP SGKTTLLL
Sbjct: 150 LPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLL 209
Query: 197 ALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLDS+LKV+G+VTYNGH + EFVP+RTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 210 ALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 269
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316
G+RYEML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGLD+CADT+V
Sbjct: 270 GSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMV 329
Query: 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGT 376
GD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN KQ++ I GT
Sbjct: 330 GDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGT 389
Query: 377 AVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
A+ISLLQPAPETYNLFDDIILLS+G IVY+GPRE VLEFFESMGFKCP+RKG ADFLQEV
Sbjct: 390 ALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEV 449
Query: 437 TSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEV 496
TSKKDQ+QYW+ ++ PYRF+T +EF E +QSFHVG+K+SDEL+T FDKSKSH AALTT+
Sbjct: 450 TSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQK 509
Query: 497 YGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGI 556
YG G+R+LLK C RELLLM+RNSFVY+FK Q+ +AL+ MT+FFRTKM +DS DGGI
Sbjct: 510 YGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGI 569
Query: 557 YAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEV 616
Y+GALFF +M+MFNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIP++F EV
Sbjct: 570 YSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEV 629
Query: 617 AVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALL 676
+WVFLTYYV+G DPN GRFFKQ+ LLL NQMASALFR IAA GR M VA+TFG+FALL
Sbjct: 630 GMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALL 689
Query: 677 VLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQV 736
+ F+LGGF+L+R D+K WW W YW SPL Y+ NAI+ NEF G WK E LG V
Sbjct: 690 LQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAV 749
Query: 737 LKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDST 796
+++RGFF AYW+W+G+GAL GF+++FN+ +++AL +LN +KP+A +++ESE+NE +S+
Sbjct: 750 VRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNESESS 809
Query: 797 IGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSV 856
+ + G+S S KK+GMVLPF+PHS+TFDEVVYSV
Sbjct: 810 --PQITSTQEGDS--------------------ASENKKKGMVLPFDPHSITFDEVVYSV 847
Query: 857 DMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 916
DMP +M+ G SD++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 848 DMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDG 907
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+IK+SGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL+YSAWLRLP +++ E R MF+ E
Sbjct: 908 SIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEE 967
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VM+LVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 968 VMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1027
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFE 1096
VMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGR SCHL+ YFE
Sbjct: 1028 VMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFE 1087
Query: 1097 AIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPG 1156
+IPGV KI +GYNPATWMLEV+A SQE+ALGVDF+D+YK+S+LYRRNK+LI++LS P PG
Sbjct: 1088 SIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPG 1147
Query: 1157 SKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGK 1216
+ DLHF +++SQ +TQ +ACLWKQHWSYWRNPAYTAVR FTTFIAL+ G++FWD+G K
Sbjct: 1148 TSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTK 1207
Query: 1217 TEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVM 1276
+ QDL+NAMGSM+ A++FLG+Q SSVQP+VSVERTVFYREKAAGMYS IP+A AQV+
Sbjct: 1208 VSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVL 1267
Query: 1277 IEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHI 1336
IEIPYIFVQ+ VY IVY+M+ F+WT AKFFW FFM+ T L+FTF+GM+TVA+TPN ++
Sbjct: 1268 IEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNV 1327
Query: 1337 AAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKM-ES 1395
A+IV+ FY +WN+FSGFI+PRPRIP+WWRWYYW PIAWTLYGL+ASQFGD++D + +
Sbjct: 1328 ASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQ 1387
Query: 1396 GETVKHFL 1403
+TV+ FL
Sbjct: 1388 NQTVEQFL 1395
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2026 bits (5249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 979/1397 (70%), Positives = 1136/1397 (81%), Gaps = 11/1397 (0%)
Query: 17 SISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLL-------TTSRGEAF 69
S S WR FSRSSREEDDEEAL+WAA+EKLPTY+R+++ +L G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAE 129
VDV LGP+ER+ L+ +LV V + DNEKFLLKLK+R++RVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPAS 189
+ + LP+ T+ E N L ILP+RKQ + +L DVSGIIKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQN 369
+CADT+VGDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN +Q
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGV 429
+HI GTAVISLLQPAPETYNLFDDIILLS+GQIVYQGPRE VLEFFESMGFKCP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGV 441
Query: 430 ADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHR 489
ADFLQEVTSKKDQ+QYW ++PYRFVTV+EF FQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKD 549
AAL T YGA +ELLKA I RE+LLMKRNSFVY+F+ Q+ V+L+ MTLFFRTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 SVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
SVT GGIY GALFF +M+MFNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANT 669
PI+F+EV +VFLTYYVIG D N G FFKQY L+LA NQMA +LFR I RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSI 729
F SF LL+ LGGF+L+RE +KKWW W YW SP+ YAQNAI NE +GHSW K +S
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEE 787
E+LGVQVLKSRG F A W+W+G GA+ GF +LFN FTLALT+L R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 SESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSL 847
E E+ + + G + H SG+ R + + + + + + +RGMVLPF P SL
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSL 860
Query: 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
+FD V YSVDMPQ+MK QGV+DD+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 861 SFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAG 920
Query: 908 RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDS 967
RKTGGYI G+I +SGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWLRLP ++DS
Sbjct: 921 RKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDS 980
Query: 968 ETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
TRKMFI EVMELVELK L+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 981 NTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1040
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087
GLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIY GPLG H
Sbjct: 1041 GLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHH 1100
Query: 1088 SCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLI 1147
S L+ YFE+IPGV KIKDGYNPATWMLEV+ QE ALGVDFSDIYK+SELY+RNK+LI
Sbjct: 1101 SSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALI 1160
Query: 1148 EDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLG 1207
+DLS+PAP S DL+F QYSQS+ TQ +ACLWKQ+ SYWRNP Y AVRFFFTT IALL G
Sbjct: 1161 KDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFG 1220
Query: 1208 SIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSG 1267
+IFWDLGGK K QDL NAMGSM+ A++F+G+ C+SVQP+V+VERTVFYRE+AAGMYS
Sbjct: 1221 TIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSA 1280
Query: 1268 IPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLT 1327
P+A QV+IEIPY VQ+ VY IVYAM+ F+WTAAKFFWY+FFM TLL+FTFYGM+
Sbjct: 1281 FPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMA 1340
Query: 1328 VAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFG 1387
V +TPN+HIA+IVS+ FY IWN+FSGF+IPRPR+P+WWRWY WA P+AWTLYGL+ SQFG
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFG 1400
Query: 1388 DMEDKMESGETVKHFLE 1404
D+E ME G VK F+E
Sbjct: 1401 DIETPMEDGTPVKVFVE 1417
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2024 bits (5245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1397 (70%), Positives = 1135/1397 (81%), Gaps = 11/1397 (0%)
Query: 17 SISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLL-------TTSRGEAF 69
S S WR FSRSSREEDDEEAL+WAA+EKLPTY+R+++ +L G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAE 129
VDV LGP+ER+ L+ +LV V + DNEKFLLKLK+R++RVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPAS 189
+ + LP+ T+ E N L ILP+RKQ + +L DVSGIIKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQN 369
+CADT+VGDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN +Q
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGV 429
+HI GTAVISLLQPAPETYNLFDDIILLS+GQIVYQGPRE VLEFFES GFKCP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGV 441
Query: 430 ADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHR 489
ADFLQEVTSKKDQ+QYW ++PYRFVTV+EF FQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKD 549
AAL T YGA +ELLKA I RE+LLMKRNSFVY+F+ Q+ V+L+ MTLFFRTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 SVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
SVT GGIY GALFF +M+MFNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANT 669
PI+F+EV +VFLTYYVIG D N G FFKQY L+LA NQMA +LFR I RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSI 729
F SF LL+ LGGF+L+RE +KKWW W YW SP+ YAQNAI NE +GHSW K +S
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEE 787
E+LGVQVLKSRG F A W+W+G GA+ GF +LFN FTLALT+L R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 SESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSL 847
E E+ + + G + H SG+ R + + + + + + +RGMVLPF P SL
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSL 860
Query: 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
+FD V YSVDMPQ+MK QGV+DD+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 861 SFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAG 920
Query: 908 RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDS 967
RKTGGYI G+I +SGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWLRLP ++DS
Sbjct: 921 RKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDS 980
Query: 968 ETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
TRKMFI EVMELVELK L+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 981 NTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1040
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087
GLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIY GPLG H
Sbjct: 1041 GLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHH 1100
Query: 1088 SCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLI 1147
S L+ YFE+IPGV KIKDGYNPATWMLEV+ QE ALGVDFSDIYK+SELY+RNK+LI
Sbjct: 1101 SSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALI 1160
Query: 1148 EDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLG 1207
+DLS+PAP S DL+F QYSQS+ TQ +ACLWKQ+ SYWRNP Y AVRFFFTT IALL G
Sbjct: 1161 KDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFG 1220
Query: 1208 SIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSG 1267
+IFWDLGGK K QDL NAMGSM+ A++F+G+ C+SVQP+V+VERTVFYRE+AAGMYS
Sbjct: 1221 TIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSA 1280
Query: 1268 IPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLT 1327
P+A QV+IEIPY VQ+ VY IVYAM+ F+WTAAKFFWY+FFM TLL+FTFYGM+
Sbjct: 1281 FPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMA 1340
Query: 1328 VAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFG 1387
V +TPN+HIA+IVS+ FY IWN+FSGF+IPRPR+P+WWRWY WA P+AWTLYGL+ SQFG
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFG 1400
Query: 1388 DMEDKMESGETVKHFLE 1404
D+E ME G VK F+E
Sbjct: 1401 DIETPMEDGTPVKVFVE 1417
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1990 bits (5155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 945/1402 (67%), Positives = 1134/1402 (80%), Gaps = 13/1402 (0%)
Query: 13 SLPRSISRWRTSSMGAFSRSSR----EEDDEEALKWAAIEKLPTYNRLKKGLLTTSR--- 65
SL R S WR S FSRSS E+DDEEAL+WAA+E+LPTY+R+++G+L S
Sbjct: 10 SLRREGSMWR-SGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYE 122
GE EVDV LG +E + LI +LV + D+E+FLLKL+ R++RVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTL 182
+L +EA+ ++ ++ LP+ T+ E N LHILP++KQ +T+L DVSGIIKP R+TL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVGTRYEMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTVVG+EM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFK 422
VN +Q IHI GTAVISLLQPAPETYNLFDDIILLS+GQ+VYQGPRE VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPF 482
CP RKGVADFLQEVTS+KDQ QYW ++RPYRFV V++F + F+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFF 542
D+++SH AAL T YG R+ELLKA I RELLLMKRN+F+YIFK + + +AL+ MT FF
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M D G IY GAL+FA VMFNGF+E++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGR 662
PSWIL+IPI+FLEV V+VF+TYYVIG DP+ RFFKQY LLLA NQM+SALFR IA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 NMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWK 722
+MVV++TFG +LL +LGGF+L+R D+KKWW W YW SPLSYAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRA 782
+ P +LGV VLKSRG F A W+W+GLGAL G+ LLFNL +T+AL+ L+ A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 ILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPF 842
++E++ + + G V+ +S E + + + + S ++GMVLPF
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPF 847
Query: 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 902
P S++F++V YSVDMP+ MK QG+++D+L+LL GVSG+FRPGVLTALMGVSGAGKTTLM
Sbjct: 848 APLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLM 907
Query: 903 DVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 962
DVLAGRKTGGYI G+I++SGYPKKQETFARISGYCEQNDIHSP VTVYESL++SAWLRLP
Sbjct: 908 DVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLP 967
Query: 963 PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
E+DSE RKMFI EVM+LVEL L+ +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 968 SEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1027
Query: 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
DEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVG
Sbjct: 1028 DEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1087
Query: 1083 PLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRR 1142
P+G++S L+ YFE I GV +IKDGYNPATWMLEV++ +QE LGVDFS+IY++SELY+R
Sbjct: 1088 PVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQR 1147
Query: 1143 NKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFI 1202
NK LIE+LS P PGS DL+F QYS+S TQ LACLWKQ+WSYWRNP+YTAVR FT I
Sbjct: 1148 NKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVI 1207
Query: 1203 ALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAA 1262
AL+ G++FW+LG +T+K+QDL NAMGSM+ A++++G+Q SVQP+V VERTVFYRE+AA
Sbjct: 1208 ALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAA 1267
Query: 1263 GMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTF 1322
GMYS P+A QV IE+PYI VQ+L+Y +VY+M+ F+WT AKF WY+FFMY TLL+FTF
Sbjct: 1268 GMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTF 1327
Query: 1323 YGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLI 1382
YGM+ V +TPN IAAI+S+ FY +WN+FSG++IPRP+IPVWWRWY W P+AWTLYGL+
Sbjct: 1328 YGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLV 1387
Query: 1383 ASQFGDMEDKMESG-ETVKHFL 1403
ASQFGD++ +E TV F+
Sbjct: 1388 ASQFGDIQHVLEGDTRTVAQFV 1409
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1981 bits (5131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1397 (68%), Positives = 1159/1397 (82%), Gaps = 14/1397 (1%)
Query: 13 SLPRSISRWRTSS--MGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFE 70
S+ R+ S WR +S AF RS REEDDEEALKWAAIEKLPTY+R++KG+LT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEA 130
VD+ LG QER+ LI +LV E DNE+FLLKL++R+ERVGID P +EVR+E+L+I+AEA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 YIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASG 190
Y+ ++ +P+FT F+++ L+ + I+ S K+ ++IL D+SGII+PGR++LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLDS+LKVSGRVTYNGH+MDEFVP+RT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV 310
ARCQGVGTRY+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI 370
CADT+VGD MIRGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN +Q++
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVA 430
HI GTA+I+LLQPAPETY+LFDDI+LLS GQIVYQGPRE +LEFFE+MGFKCP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRA 490
DFLQEVTS+KDQ QYW ++ PYR+++V +F+E F+ FHVG+ + EL+ PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDS 550
ALTT YG + EL KAC SRE LLMKRNSFVYIFK++Q+ + + MT+F RTKMH+ S
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 VTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
V DG I+ GA+F V +FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 ISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTF 670
ISFLE AVW+ +TYYV+G DPN RFF+ Y LL+ +QMAS LFRL+AA GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTP--NS 728
GSFA L+L LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 IESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEES 788
++LGVQVLK RG F A W+W+G+GAL G+++LFN+ F L L +L+ L K +A+++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNEQDSTIGGTVQLSTHG-ESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSL 847
+ + G V+L T G +S N + N+ +T G+ +KRGMVLPF P S+
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEIT-----GADTRKRGMVLPFTPLSI 846
Query: 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
TFD + YSVDMPQ+MK +GV++D+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 847 TFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 906
Query: 908 RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDS 967
RKTGGYI G+I +SGYPKKQETFARI+GYCEQNDIHSP VTVYESLLYSAWLRLP E+DS
Sbjct: 907 RKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDS 966
Query: 968 ETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
E RKMF+ EVMELVEL L+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 967 EARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1026
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLG +
Sbjct: 1027 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHN 1086
Query: 1088 SCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLI 1147
SCHL++YFE I GV KIKDGYNPATWMLEV+ +QE LG++F+++Y+ S+LY+RNK+LI
Sbjct: 1087 SCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLI 1146
Query: 1148 EDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLG 1207
+LS P PGS DLHF Q+SQ FTQ +ACLWKQH SYWRNP+YTA R FFTT IAL+ G
Sbjct: 1147 SELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFG 1206
Query: 1208 SIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSG 1267
+IF +LG K KR DL N++GSM+ A++F+GIQ +VQPIV VERTVFYREKAAGMYS
Sbjct: 1207 TIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSA 1266
Query: 1268 IPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLT 1327
+P+A AQV+IEIP+IF+Q++VY IVY+++ FDWT KFFWY+FFM+ T ++FTFYGM+
Sbjct: 1267 LPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMA 1326
Query: 1328 VAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFG 1387
VA+TPN IAAIVST FY IWNIF+GF+IPRPRIP+WWRWY WA P+AWTLYGL+ASQ+G
Sbjct: 1327 VAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYG 1386
Query: 1388 DMEDK-MESGETVKHFL 1403
D+ + +E GE V+ ++
Sbjct: 1387 DITNSTLEDGEVVQDYI 1403
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1957 bits (5071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 953/1393 (68%), Positives = 1147/1393 (82%), Gaps = 12/1393 (0%)
Query: 13 SLPRSISRWRT-SSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEV 71
SL RS+S WR+ S+ F RSSREEDDEEALKWAA+EKLPTY+RL+KG++T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAY 131
D+ LG QER+ L+ KLV E DNE+FLLKL+NR+ERVGID P +EVR+EHLNI AEA+
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 IASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGK 191
+ ++ +P+ F+ + L+ LH++PS K+ ++IL DVSGIIKP R+TLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD++LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVGTRYEMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371
ADT+VGD MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN +Q++H
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVAD 431
I GTA+I+LLQPAPETY+LFDDI+LLS+GQIVYQGPRE VLEFFESMGFKCP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAA 491
FLQEVTS+KDQ+QYWV + PYRFV V EF+E F+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSV 551
LTT YG + ELLKACI RE LLMKRNSFVYIFK++Q+ +AL+ MT+FFRTK+ ++ +
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
D I+ GA+F V +FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIPI
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFG 671
SF+E VW+ +TYYVIG DPN R F+ Y LL+ +Q+AS LFRL+AA GR+MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 SFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIES 731
+FA LVL LGGF+++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + ++
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 LGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESN 791
LG + L++RG F W+W+G+GAL G+++LFN F L L +L+ L K + ++EE+
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 EQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDE 851
++ + G V+L+T G + S S+ E +K+GMVLPF P S+TFD
Sbjct: 797 KEANRTGANVELATRGSAAT------SDGGSV---EIRKDGNRKKGMVLPFTPLSITFDN 847
Query: 852 VVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
V YSVDMPQ+MK +GV++DKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 912 GYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
GYI G+I++SGYPK QETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP E+D + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
MF+ EVM+LVEL L+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHL 1091
RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGR S HL
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 1092 VSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLS 1151
+ YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F+++Y+ S+LY+RNK LI++LS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 1152 KPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFW 1211
P PGSKDL FA Q+SQS Q LACLWKQH SYWRNP+YTA R FFT IAL+ G+IFW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 1212 DLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWA 1271
DLG K DL+NAMGSM+ A++F+GIQ +VQPIV VERTVFYREKAAGMYS +P+A
Sbjct: 1208 DLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYA 1267
Query: 1272 LAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAIT 1331
AQV+IE+P+I VQ+L+Y +VY+M+ FDWTAAKF WY+FFM+ T L+FT+YGM+ VA+T
Sbjct: 1268 YAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMT 1327
Query: 1332 PNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMED 1391
PN IAAIV+ FY IWNIF+GFIIPRPRIP+WWRWYYWA P+AWTLYGL+ SQFG+ D
Sbjct: 1328 PNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTD 1387
Query: 1392 KM-ESGETVKHFL 1403
M + ETVK FL
Sbjct: 1388 TMSDVDETVKDFL 1400
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1955 bits (5065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1401 (68%), Positives = 1125/1401 (80%), Gaps = 18/1401 (1%)
Query: 19 SRWRTSSMGAFSRSSRE------EDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFE-- 70
S W ++ G FSRS EDDEEAL+WAA+EKLPTY+R+++ +L
Sbjct: 27 SMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGE 86
Query: 71 -----VDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLN 125
VDV +LGPQER+ L+ +LV V E DNE+FLLKLK RI+RVGID+P +EVR+EHL
Sbjct: 87 AGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLE 146
Query: 126 IEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLG 185
EAE + + LP+ T+ EG N L ILP++KQ + IL DVSGI+KP R+TLLLG
Sbjct: 147 AEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLG 206
Query: 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245
PP SGKTTLLLALAG+L +K SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTVRE
Sbjct: 207 PPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRE 266
Query: 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305
TL+FSARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY LK+
Sbjct: 267 TLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKI 326
Query: 306 LGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGLD+CADT+VGD+M+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 327 LGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKS 386
Query: 366 FKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPK 425
+Q IHI GTAVISLLQPAPETY+LFDDIILLS+GQIVYQGPRE VLEFFE MGFKCP+
Sbjct: 387 LRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPE 446
Query: 426 RKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKS 485
RKGVADFLQEVTS+KDQKQYW+ ++PYR+V V++F FQSFH G+ I++EL TPFDKS
Sbjct: 447 RKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKS 506
Query: 486 KSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTK 545
K+H AALTT YG ELLKA I RE LLMKRNSFVYIF+ Q+ V+ + MT+FFRTK
Sbjct: 507 KNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTK 566
Query: 546 MHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605
MH+DSVTDG I+ GALFF+ +M+MFNG SE+ +TI KLPVF+KQRD FFP W Y IPSW
Sbjct: 567 MHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSW 626
Query: 606 ILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMV 665
ILKIP+SF+EV +VF++YYVIG DP+AGRFFKQY L+LA NQMA+ALFR + RNM+
Sbjct: 627 ILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMI 686
Query: 666 VANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFT 725
VAN FGSF LL+ LGGF+L RE +KKWW W YW SP+ YAQNAI NEFLGHSW K
Sbjct: 687 VANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVL 746
Query: 726 PNSI--ESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAI 783
NS+ E+LGVQ L+SRG F A W+W+G GAL GF++LFN FTLALT+L K +
Sbjct: 747 NNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPS 806
Query: 784 LTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFE 843
++EE +Q + G + + T S N N+ + S A+ S P +RGMVLPF
Sbjct: 807 VSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEI---ADNSQPTQRGMVLPFA 863
Query: 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
P SLTFD + YSVDMPQ+MK G+ +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 864 PLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 923
Query: 904 VLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
VLAGRKTGGYI GNI +SGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP
Sbjct: 924 VLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPK 983
Query: 964 EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
++DS TRKMFI EVMELVELKPL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 984 DVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1043
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGP
Sbjct: 1044 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1103
Query: 1084 LGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRN 1143
LG S L+ YFE I GV +IKDGYNPATWMLEVS SQE ALGVDF DIY++SEL++RN
Sbjct: 1104 LGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRN 1163
Query: 1144 KSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIA 1203
K+LI++LS P PGS +L+F +YS S Q LACLWK H SYWRNP Y A+R FFTT IA
Sbjct: 1164 KALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIA 1223
Query: 1204 LLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAG 1263
LL G+IFWDLGGKT K QDL NAMGSM++A++F+G+ SVQP+VSVERTVFYRE+AAG
Sbjct: 1224 LLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAG 1283
Query: 1264 MYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFY 1323
MYS P+A QV IE PY VQS++Y IVY+M+ F WTAAKFFWY+FFM+ T L+FTFY
Sbjct: 1284 MYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFY 1343
Query: 1324 GMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIA 1383
GM+ V +TP++H+A+IVS+ FYGIWN+FSGFIIPRP++P+WWRWY W P+AWTLYGL+A
Sbjct: 1344 GMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVA 1403
Query: 1384 SQFGDMEDKMESGETVKHFLE 1404
SQFGD+ M+ G VK F+E
Sbjct: 1404 SQFGDIMTPMDDGTPVKIFVE 1424
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1941 bits (5027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1383 (67%), Positives = 1103/1383 (79%), Gaps = 17/1383 (1%)
Query: 35 EEDDEEALKWAAIEKLPTYNRLKKGLL-----------TTSRGEAFEVDVSNLGPQERQR 83
EEDDEEAL+WAA++KLPTY+R++ +L G VDV +LGP ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKF 143
L+ +LV V + DNE+FLLKLK RI RVGID+P +EVR+EHL +EAE + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD 203
T+ E N L ILP+RKQ L IL D+SGIIKP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL- 228
Query: 204 SSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
LK SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTVRETL+FSARCQGVG+R++ML
Sbjct: 229 KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323
TEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADT+VGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
ISGGQRKRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV +Q IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQK 443
PAPETY+LFDDIILLS+G IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTS+KDQK
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRE 503
QYW ++PYR+V ++EF FQSFH G+ I++EL TPFDKSKSH AALTT YG E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFF 563
LLKA I RELLL+KRNSFVYIF+ IQ+ +V+ + MT+FFRTKMH+DSV DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 ATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLT 623
A +M+M NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F++
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGG 683
YYVIG DPN GRFFKQY L+LA +QMA+ALFR + RN++VAN FGSF LL+ LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSI--ESLGVQVLKSRG 741
F+L+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K NS+ E+LGVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTV 801
F A W+W+G GAL GF++LFN+ FTLALT+L K + ++EE +Q + G +
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVL 828
Query: 802 QLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQ 861
+ T S N ++ + S A+ S P +RGMVLPF P SLTF+++ YSVDMPQ+
Sbjct: 829 DVDTMASSNNLAIVGSTGTGSEI---ADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQE 885
Query: 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVS 921
MK G+ +D+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI +S
Sbjct: 886 MKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISIS 945
Query: 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
GYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP ++DS TRKMFI EVMELV
Sbjct: 946 GYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELV 1005
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
ELKPL+ +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 1006 ELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGV 1101
RNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLG HS L+ YFE I GV
Sbjct: 1066 RNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGV 1125
Query: 1102 EKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLH 1161
KI DGYNPATWMLEV+ SQE AL VDF DIY++SEL++RNK+LI++LS P PGS +L+
Sbjct: 1126 SKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELY 1185
Query: 1162 FAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQ 1221
F QYSQS Q LACLWKQH SYWRNP Y A+R FFTT IAL+ G+IFWDLGGK + Q
Sbjct: 1186 FPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQ 1245
Query: 1222 DLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPY 1281
DL NAMGSM+ A++F+G+ SVQP+VSVERTVFYRE+AAGMYS +P+A QV IE PY
Sbjct: 1246 DLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPY 1305
Query: 1282 IFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVS 1341
VQS++YS IVY+M+ F WT AKFFWY+FFM+ TLL+FTFYGM+ V +TP++H+A+IVS
Sbjct: 1306 TLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVS 1365
Query: 1342 TLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKMESGETVKH 1401
+ FY IWN+F+GF+I RP PVWWRWY W P+AWTLYGLI SQ+GD+ M+ G V
Sbjct: 1366 SAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNV 1425
Query: 1402 FLE 1404
F+E
Sbjct: 1426 FVE 1428
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.966 | 0.969 | 0.741 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.969 | 0.731 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.963 | 0.968 | 0.727 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.967 | 0.723 | 0.0 | |
| 357455075 | 1427 | Pleiotropic drug resistance protein [Med | 0.965 | 0.969 | 0.721 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.956 | 0.834 | 0.721 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.954 | 0.948 | 0.732 | 0.0 | |
| 357455071 | 1492 | Pleiotropic drug resistance protein [Med | 0.967 | 0.929 | 0.715 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.972 | 0.964 | 0.731 | 0.0 | |
| 75326590 | 1434 | RecName: Full=Pleiotropic drug resistanc | 0.954 | 0.953 | 0.718 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2198 bits (5696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1042/1406 (74%), Positives = 1210/1406 (86%), Gaps = 21/1406 (1%)
Query: 1 MEGNNDIYMASTSLPRSISR-WRTSSMGAFSRSSR--EEDDEEALKWAAIEKLPTYNRLK 57
MEG ++Y+A SL R S WR+++M FS+SSR E+DDEEALKWAAIE+LPTY+RLK
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGLLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKV 117
KGLLTTS+GEA E+DV NLG E++ L+++LV V E DNE FLLKLKNRI+RVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKP 177
EVR+EHLN+E EA++ S+ALP+F F I EGFLN+LHILPS K+ L+IL+DVSGIIKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH 237
R+TLLLGPP+SGKTTLLLALAGKLD LK SGRVTYNGH M+EFVP+RTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCAD +VG+EM+RG+SGGQRKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFE 417
TT+QIVN KQ IHI GTAVISLLQP PETYNLFDDIILLS+GQIVYQGPRE VLEFFE
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDE 477
MGFKCP+RKGVADFLQEVTS+KDQ QYW K++PY FVTV+EF E FQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVY 537
L TPFDKSKSH AALTT+ YG G+ ELLKAC SRE+LLMKRNSFVYIFKL Q+ +A+V
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+MH+DSVT+GGIY GALFF+ V +MFNG SEIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLI 657
WA+++P WI KIPI+ ++VA+WVFLTYYVIG DPN GRFFKQY LL +QMAS LFR I
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFL 717
AA GRNM+VANTFGSFALL LF+LGGF+LSR++IKKWW W YW SPL Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRL 777
G+SW K P++ E+LG+QVL+SRGFF HAYW+W+G+GAL GF LL+N FTLALTFL L
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRG 837
+KP+A+++E+S SN T G +QLS+ +R T E +H K++G
Sbjct: 780 QKPQAVISEDSASNTSGKT-GEVIQLSS-------VR---------TELIVEENHQKQKG 822
Query: 838 MVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TF+++ YSVDMPQ+MK QG ++D+L LL GVSGAFRPGVLTALMGVSGAG
Sbjct: 823 MVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAG 882
Query: 898 KTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVLAGRKTGGYI G+I++SG+PKKQETFARISGYCEQNDIHSP VTVYESLLYS+
Sbjct: 883 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSS 942
Query: 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLPPE++SETRKMFI EVMELVEL PL+Q+LVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 943 WLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1002
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG
Sbjct: 1003 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1062
Query: 1078 EIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRS 1137
EIYVGPLGRHSC L+ YFEAI GV IKDGYNPATWMLEVS+ +QE+ LG+DF+ IYK S
Sbjct: 1063 EIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNS 1122
Query: 1138 ELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFF 1197
ELYRRNK+LIE+LS P GS DL+F QYSQS FTQ +ACLWKQHWSYWRNP YTAVRF
Sbjct: 1123 ELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFL 1182
Query: 1198 FTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFY 1257
FTT IAL+ G++FWDLG KT KRQDL NAMGSM+ AI+FLGIQ SSVQP+V+VERTVFY
Sbjct: 1183 FTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFY 1242
Query: 1258 REKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTL 1317
RE+AAGMYS +P+A AQV+IE+PYIF+Q+ VY IVYAM+ F+W+AAKFFWY+FFMY TL
Sbjct: 1243 RERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTL 1302
Query: 1318 LFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWT 1377
LF+T+YGM+ VA+TPN +A+IVS+ FY IWN+FSGFIIPRPRIPVWWRWY W P+A+T
Sbjct: 1303 LFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYT 1362
Query: 1378 LYGLIASQFGDMEDKMESGETVKHFL 1403
LYGL++SQFGD++ +ESGETV+ F+
Sbjct: 1363 LYGLVSSQFGDIKHTLESGETVEDFV 1388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2182 bits (5654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1029/1407 (73%), Positives = 1198/1407 (85%), Gaps = 23/1407 (1%)
Query: 1 MEGNNDIYMASTSL-PRSISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKG 59
MEG+ DIY AS SL RS + WR S + AFSRSSREEDDEEALKWAA+EKLPTYNRL+KG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 LLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEV 119
LLT S G A E+DVS+LG QERQ+L+ +LV V E DNE+FLLKLK RI+RVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGR 179
RYEHLNIEAEA++ S+ALPSF T++ EGF N LH+ S+K+H+TILKDVSGIIKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+TLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH ++EFVP+RTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADT+VGDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
FQIV+ + +HI GTAVISLLQPAPETY+LFDDIIL+S+GQ+VY GPRE VL+FFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQ 479
GF+CP+RKGVADFLQEVTSKKDQ QYWV +++PYRFVTV +F E FQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMT 539
PFD++KSH AALTT+ YG ++ELLKA SRE LLMKRNSFVY+FKL Q+ +ALV MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LF RT+MH +++ D G+YAGA+FF + VMFNG +EISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAA 659
YAIPSWILKIP++ +EVAVWVFLTYYVIG DPN GRFFKQY +LL +QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGH 719
GRNM+VANTFG+FA++ + +LGGF+LS+ DIK WW W YW SPL Y QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEK 779
SW N+ +LGV+ L+SR FF +YW+WLGLGAL GFV LFN+ F LAL FL +K
Sbjct: 720 SWH----NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMV 839
P+A +TE+ SNE GT+ DI S + E SH KK+GMV
Sbjct: 776 PQATITEDESSNE------GTLA---------DIELPGIESSGRGDSLVESSHGKKKGMV 820
Query: 840 LPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
LPFEPHS+TFDEVVYSVDMPQ+MK QGV +D+LVLL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 900 TLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVLAGRKTGGYI G+IK+SGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 960 RLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP +DS+TRKMFI EVMELVEL P++ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1080 YVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSEL 1139
YVGPLGRHS HL+ YFE+I GV KIKDGYNPATWMLEV+A +QE++LGVDF+D+YK S+L
Sbjct: 1061 YVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDL 1120
Query: 1140 YRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFT 1199
YRRNK LI++L +PAPGSKDLHF QYSQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 YRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1200 TFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYRE 1259
TFIAL+ G+IFWDLGGK R DLLNA+GSM+TA++FLG+Q SSVQP+V++ERTVFYRE
Sbjct: 1181 TFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYRE 1240
Query: 1260 KAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLF 1319
KAAGMYS +P+A AQ+++E+PY+FVQ++ Y IVYAM+ F+WTA KFFWY+FFMY TLL+
Sbjct: 1241 KAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLY 1300
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLY 1379
+TFYGM+TV +TPNHHIA+IV+ FY +WN+FSGF++ RP IPVWWRWYYWA P+AWT+Y
Sbjct: 1301 YTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIY 1360
Query: 1380 GLIASQFGDMEDKM--ESGETVKHFLE 1404
GL+ASQFGD+ + M E + VK FLE
Sbjct: 1361 GLVASQFGDLTEPMTSEGQKIVKDFLE 1387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2157 bits (5588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1023/1407 (72%), Positives = 1194/1407 (84%), Gaps = 26/1407 (1%)
Query: 1 MEGNNDIYMASTSL-PRSISRWRTSSMGAFSRSSR--EEDDEEALKWAAIEKLPTYNRLK 57
MEG+ DIY A SL S + WR S M AFSRSSR E++DEEALKWAA+EKLPTYNRL+
Sbjct: 1 MEGS-DIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLR 59
Query: 58 KGLLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKV 117
KGLLTTSRG A E+D++ LG QERQ+L+++L+ V E DNE LLKLK RI+RVGID+P +
Sbjct: 60 KGLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTI 119
Query: 118 EVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKP 177
EVRYEHLN+EAEAY+ S+ALP+F F T++ E F LHIL +K+H+TIL+DVSGIIKP
Sbjct: 120 EVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKP 179
Query: 178 GRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH 237
R+ LLLGPP+SGKTTLLLAL+GKLD +LKVSGRV YNGH M+EFVP+RTAAYISQHD H
Sbjct: 180 RRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAFSARCQGVGTRY++L+ELARREK A IKPDPDIDVYMKA AT GQEA++
Sbjct: 240 IGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASL 299
Query: 298 ITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLD+CADT++GDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 359
Query: 358 TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFE 417
TTFQIV +Q +HI GTAVISLLQPAPETY LFDDI+L+S+GQIVYQGPRE VLEFFE
Sbjct: 360 TTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDE 477
+GF+CP+RKGVADFLQEVTS+KDQ+QYW+H++ YRFVTV EF E FQSFHVG++I +E
Sbjct: 420 YVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEE 479
Query: 478 LQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVY 537
L TPFDKSKSH AALTT+ YG ++ELLKA SRE LLMKRNSFVYIFKL Q+ +A++
Sbjct: 480 LATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILT 539
Query: 538 MTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MT+F RT+MH++S+ DGG+Y GALFFA V++MFNG +EISMTI KLP+FYKQRD F+P
Sbjct: 540 MTMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPS 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLI 657
WAYAIPSWILKIPI+F+E AVWVFLTYYVIG DPN GR KQY +LL NQM+S LFR I
Sbjct: 600 WAYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAI 659
Query: 658 AATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFL 717
AA GRNM+VA+TFGSFALLVLF+LGGFVLSR DIK WW W YW SPL Y QNAIV NEFL
Sbjct: 660 AALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRL 777
G SW FTPNS ++LG+Q+L+SRGFF HAYW+W+G+GAL GF++LFN+ +TLALT+LN
Sbjct: 720 GDSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPY 779
Query: 778 EKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRG 837
+ P+ +TEESES N I E S+ ++ + + SH KKRG
Sbjct: 780 DTPQTTITEESESGMT-----------------NGIAE--SAGRAIAVMSS--SHKKKRG 818
Query: 838 MVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
M+LPFEP+S+TFD++VYSVDMP +MK QGV +D+LVLL GVSGAFRPGVLTALMGVSGAG
Sbjct: 819 MILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAG 878
Query: 898 KTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVLAGRKTGGYI GNIKVSGYPK+QETFARISGYCEQNDIHSP VTVYESL+YSA
Sbjct: 879 KTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSA 938
Query: 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLP E+++ TRKMFI EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 939 WLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANP 998
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG
Sbjct: 999 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1058
Query: 1078 EIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRS 1137
EIYVGPLGRHS ++ YFE+I GV KIKDGYNPATWMLEV+ P+QE+ LGVDF +IY+ S
Sbjct: 1059 EIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNS 1118
Query: 1138 ELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFF 1197
L RRNK LI +L PAPGSKDLHF QY QS Q LACLWKQHWSYWRNP YTAVRF
Sbjct: 1119 GLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFL 1178
Query: 1198 FTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFY 1257
TT A+L G++FWDLGGK RQDL NAMGSM+ A++F+G+Q +SVQP+V++ERTVFY
Sbjct: 1179 STTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFY 1238
Query: 1258 REKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTL 1317
RE+AAGMYS +P+ALAQV+IE+PY+FVQ+ YS IVYAMM F+WT KFFWY+FFMY TL
Sbjct: 1239 RERAAGMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTL 1298
Query: 1318 LFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWT 1377
+FTFYGM+TVA+TPNHH+A++V++ FYGIWN+FSGF+I RP IPVWWRWYYWA P+AWT
Sbjct: 1299 CYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWT 1358
Query: 1378 LYGLIASQFGDMEDKMESGE-TVKHFL 1403
+YGL+ASQFGD+ + M+S +V+ F+
Sbjct: 1359 IYGLVASQFGDITNVMKSENMSVQEFI 1385
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2152 bits (5577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1014/1401 (72%), Positives = 1185/1401 (84%), Gaps = 18/1401 (1%)
Query: 6 DIYMASTSLPRSISR-WRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTS 64
D Y AS SL R+ S WR+S FSRSSR+EDDEEALKWAA+EKLPTYNRL++GLL S
Sbjct: 5 DTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGS 64
Query: 65 RGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHL 124
GEA E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGID+P++EVR+EHL
Sbjct: 65 EGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHL 124
Query: 125 NIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLL 184
I+AEA++ S+ALPSF F + EG LN + ILPS+K+ TIL DVSGIIKP RLTLLL
Sbjct: 125 TIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLL 184
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
GPP+SGKTTLLLALAGKLD +LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMTVR
Sbjct: 185 GPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVR 244
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK
Sbjct: 245 ETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLK 304
Query: 305 VLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLD+CADT+VGDEMIRGISGGQRKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N
Sbjct: 305 ILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIIN 364
Query: 365 CFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCP 424
KQ IHI GTAVISLLQPAPETYNLFDDIILLS+ QIVYQGPRE VLEFFES+GFKCP
Sbjct: 365 SLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCP 424
Query: 425 KRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDK 484
+RKG ADFLQEVTS+KDQ QYW K+ PY FVTV+EF E FQSFH+G+K++DEL +PFD+
Sbjct: 425 ERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDR 484
Query: 485 SKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRT 544
+KSH AALTT+ YG ++ELL A +SRE LLMKRNSFVYIFKL Q+A VA++ MTLF RT
Sbjct: 485 AKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRT 544
Query: 545 KMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
+M+K+S DG IY GALFF VM+MFNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+
Sbjct: 545 EMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPT 604
Query: 605 WILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNM 664
W+LKIPI+F+EVAVWVF+TYYVIG DPN R F+QY LLL NQMAS LFR IAA GRNM
Sbjct: 605 WVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNM 664
Query: 665 VVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKF 724
+VA+TFG+FA+L+L +LGGF+LS +++KKWW W YW SPL YAQNAIV NEFLG SW K
Sbjct: 665 IVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKN 724
Query: 725 TPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAIL 784
NS ESLG+ VLKSRGFF A+W+W+G GAL GF+ +FN +TL L +LN EKP+A++
Sbjct: 725 VTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVI 784
Query: 785 TEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEP 844
TEES+ N + +T G E ++ + AEG+H KK+GMVLPF+P
Sbjct: 785 TEESD-NAKTATTGD---------------ETHTWGEHMVEAIAEGNHNKKKGMVLPFQP 828
Query: 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 904
HS+TFD++ YSVDMP++MK QG +D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 829 HSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 888
Query: 905 LAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 964
LAGRKTGGYI GNI +SGYPKKQETFARISGYCEQNDIHSP VTV+ESLLYSAWLRLP +
Sbjct: 889 LAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSD 948
Query: 965 IDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
++SETRKMFI EVMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 949 VNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1008
Query: 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG EIYVGPL
Sbjct: 1009 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPL 1068
Query: 1085 GRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNK 1144
GRHS HL++YFE I GV KIKDGYNPATWMLEV+ +QE LGVDF++IYK S+LYRRNK
Sbjct: 1069 GRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNK 1128
Query: 1145 SLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIAL 1204
LI++LS+PAPG+KDL+FA QYSQ FTQFLACLWKQ WSYWRNP YTAVRF FTTFIAL
Sbjct: 1129 DLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIAL 1188
Query: 1205 LLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGM 1264
+ G IFWDLG + ++QDLLNAMGSM+ A++FLG+Q SVQP++ VERTVFYRE+AAGM
Sbjct: 1189 MFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGM 1248
Query: 1265 YSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYG 1324
YS +P+A Q ++EIPY+F Q++VY IVY M+ F+WTA KFFWY+FFM+ TLL+FTFYG
Sbjct: 1249 YSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYG 1308
Query: 1325 MLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIAS 1384
M+ VA TPN HIA+I++ FY +WN+FSGFI+PR RIPVWWRWY W P+AWTLYGL+AS
Sbjct: 1309 MMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVAS 1368
Query: 1385 QFGDMEDK-MESGETVKHFLE 1404
QFGD++ +E+ +TVK FL+
Sbjct: 1369 QFGDIQSTLLENNQTVKQFLD 1389
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2152 bits (5577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1015/1407 (72%), Positives = 1188/1407 (84%), Gaps = 23/1407 (1%)
Query: 1 MEGNNDIYMASTSL-PRSISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKG 59
MEG DIY A+ SL RS + WR S + FS+SSREEDDEEALKWAA+EKLPTYNRL+KG
Sbjct: 1 MEGT-DIYRATNSLRARSSTVWRQSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 LLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEV 119
LLT S G A EVDV +L QE+Q+L+ +LV V E DNE+FLLK+K R++RVG+D+P +EV
Sbjct: 60 LLTASHGGAHEVDVGDLAFQEKQKLLERLVKVAEEDNERFLLKVKERVDRVGLDIPTIEV 119
Query: 120 RYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGR 179
RY++L I+AEA++ S+ALPSF T++ EG LN+LHI+P++K+H++ILKDVSGI+KP R
Sbjct: 120 RYQNLKIDAEAFVGSRALPSFINAATNVVEGVLNFLHIIPTKKRHVSILKDVSGIVKPRR 179
Query: 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+TLLLGPP SGKTTLLLAL+GKLD SL+++G VTYNGH ++EFVP+RTAAYISQHD HIG
Sbjct: 180 MTLLLGPPGSGKTTLLLALSGKLDPSLQLTGSVTYNGHGLNEFVPQRTAAYISQHDVHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPDIDVYMKAIATEGQE ++ T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDIDVYMKAIATEGQEYSIST 299
Query: 300 DYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADT+VGDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
FQIV+ +Q +HI GTAVISLLQPAPETY+LFDDIIL+S+GQ+VY GPRE VL+FFE+M
Sbjct: 360 FQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFETM 419
Query: 420 GFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQ 479
GFKCP+RKG ADFLQEVTSKKDQ QYWV +++PYRFVTV +F E FQSFH+G+K+++EL
Sbjct: 420 GFKCPERKGAADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLAEELS 479
Query: 480 TPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMT 539
PFDK+KSH AALTT+ YG + ELLKA SRE LLMKRNSFVYIFKL Q+ +AL+ MT
Sbjct: 480 VPFDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQLFIMALIAMT 539
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFFRT+MH++ D G+YAGALFF V +MFNG SEISMTIAKLPV+YKQRD F+P WA
Sbjct: 540 LFFRTEMHRNDQDDAGVYAGALFFTLVTMMFNGMSEISMTIAKLPVYYKQRDLLFYPSWA 599
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAA 659
YAIPSWILKIP+S +EV++WVFLTYYVIG DPN GR FKQ+ +L +QMAS LFR IA+
Sbjct: 600 YAIPSWILKIPVSLMEVSLWVFLTYYVIGFDPNVGRMFKQFVVLFFMSQMASGLFRAIAS 659
Query: 660 TGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGH 719
GRNM+VANTFGSFALL SLGGF+LSR+DIK WW W YW SPL Y QNA++ANEFLGH
Sbjct: 660 LGRNMIVANTFGSFALLTFLSLGGFILSRKDIKGWWIWGYWISPLMYGQNALMANEFLGH 719
Query: 720 SWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEK 779
SW N+ LG L +RGFF HAYW+W+G+G L GFV LFN+ F +AL L +K
Sbjct: 720 SWH----NATADLGKDYLDTRGFFPHAYWYWIGVGGLVGFVFLFNVAFGVALAVLGPFDK 775
Query: 780 PRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMV 839
P A +TE+S E DS+ V+L SG + S+T E SH KK+GMV
Sbjct: 776 PSATITEDS---EDDSSTVQEVELPRIESSGR--------ADSVT----ESSHGKKKGMV 820
Query: 840 LPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
LPFEPHS+TFD++VYSVDMP +MK QGV +D+LVLL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDDIVYSVDMPVEMKEQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 900 TLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVLAGRKTGGYI G+IKVSGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 960 RLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP +DS TRKMFI EVM+LVEL L+ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSGVDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1080 YVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSEL 1139
YVGPLGRHS HL+ YFE+I GV KIKDGYNPATWMLEV+ +QE+ LGVDF+D+YK S+L
Sbjct: 1061 YVGPLGRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDL 1120
Query: 1140 YRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFT 1199
YRRNK LI++LS PAPGSKDLHF Q+SQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 YRRNKQLIQELSVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1200 TFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYRE 1259
TFI L+ G++FWDLGGK RQDLLNA+GSM+TA++FLG+Q SSVQP+V+VERTVFYRE
Sbjct: 1181 TFIGLMFGTMFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYRE 1240
Query: 1260 KAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLF 1319
KAAGMYS +P+A +Q+++E+PY+F Q+++Y IVYAM+ FDWTA KF WY+FFMY TLL+
Sbjct: 1241 KAAGMYSALPYAFSQILVELPYVFAQAVIYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLY 1300
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLY 1379
FTFYGM+ VA+TPNHH+A+IV+ FY IWN+FSGF++PRP IP+WWRWYYWA P+AWT+Y
Sbjct: 1301 FTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIY 1360
Query: 1380 GLIASQFGDMEDKM--ESGETVKHFLE 1404
GL+ASQFGD+ M E G+ VK FL+
Sbjct: 1361 GLVASQFGDITTVMSTEGGKDVKTFLD 1387
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2150 bits (5570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1397 (72%), Positives = 1180/1397 (84%), Gaps = 26/1397 (1%)
Query: 10 ASTSLPRSISR-WRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEA 68
AS SL R+ S WR+S FSRSSR+EDDEEALKWAA+EKLPTYNRL++GLL S GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 FEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEA 128
E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGID+P++EVR+EHL I+A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPA 188
EA++ S+ALPSF F + EG LN + ILPS+K+ TIL DVSGIIKP RLTLLLGPP+
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLD +LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
D+CADT+VGDEMIRGISGGQRKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N KQ
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKG 428
IHI GTAVISLLQPAPETYNLFDDIILLS+ QIVYQGPRE VLEFFES+GFKCP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSH 488
ADFLQEVTS+KDQ QYW K+ PY FVTV+EF E FQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHK 548
AALTT+ YG ++ELL A +SRE LLMKRNSFVYIFKL Q+A VA++ MTLF RT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
+S DG IY GALFF VM+MFNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVAN 668
IPI+F+EVAVWVF+TYYVIG DPN R F+QY LLL NQMAS LFR IAA GRNM+VA+
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNS 728
TFG+FA+L+L +LGGF+LS +++KKWW W YW SPL YAQNAIV NEFLG SW K NS
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 IESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEES 788
ESLG+ VLKSRGFF A+W+W+G GAL GF+ +FN +TL L +LN EKP+A++TEES
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEES 1009
Query: 789 ESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLT 848
++ + +++ + AEG+H KK+GMVLPF+PHS+T
Sbjct: 1010 DN------------------------AKTATTEHMVEAIAEGNHNKKKGMVLPFQPHSIT 1045
Query: 849 FDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908
FD++ YSVDMP++MK QG +D+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 1046 FDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 1105
Query: 909 KTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSE 968
KTGGYI GNI +SGYPKKQETFARISGYCEQNDIHSP VTV+ESLLYSAWLRLP +++SE
Sbjct: 1106 KTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSE 1165
Query: 969 TRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
TRKMFI EVMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 1166 TRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1225
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHS 1088
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG EIYVGPLGRHS
Sbjct: 1226 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHS 1285
Query: 1089 CHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIE 1148
HL++YFE I GV KIKDGYNPATWMLEV+ +QE LGVDF++IYK S+LYRRNK LI+
Sbjct: 1286 SHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIK 1345
Query: 1149 DLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGS 1208
+LS+PAPG+KDL+FA QYSQ FTQFLACLWKQ WSYWRNP YTAVRF FTTFIAL+ G
Sbjct: 1346 ELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGL 1405
Query: 1209 IFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGI 1268
IFWDLG + ++QDLLNAMGSM+ A++FLG+Q SVQP++ VERTVFYRE+AAGMYS +
Sbjct: 1406 IFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSAL 1465
Query: 1269 PWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTV 1328
P+A Q ++EIPY+F Q++VY IVY M+ F+WTA KFFWY+FFM+ TLL+FTFYGM+ V
Sbjct: 1466 PYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAV 1525
Query: 1329 AITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGD 1388
A TPN HIA+I++ FY +WN+FSGFI+PR RIPVWWRWY W P+AWTLYGL+ASQFGD
Sbjct: 1526 AATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGD 1585
Query: 1389 MEDK-MESGETVKHFLE 1404
++ +E+ +TVK FL+
Sbjct: 1586 IQSTLLENNQTVKQFLD 1602
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2145 bits (5558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1010/1379 (73%), Positives = 1185/1379 (85%), Gaps = 11/1379 (0%)
Query: 29 FSRSSREEDDEEALKWAAIEKLPTYNRLKKGLL-TTSRGEAFEVDVSNLGPQERQRLINK 87
FS SSREEDDEEALKWAA+E+LPTY+RL+KG+L + SR A E+DV +LG ER+ L+ +
Sbjct: 31 FSMSSREEDDEEALKWAALERLPTYDRLRKGILFSASRNGANEIDVGSLGFHERKLLLER 90
Query: 88 LVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSI 147
L+ V E DNE+FLLKLKNRI+RVGI+LP +EVR+E+LNIEAEA++ S+ALP+F F ++
Sbjct: 91 LLRVVEEDNEEFLLKLKNRIDRVGIELPTIEVRFENLNIEAEAFVGSRALPTFVNFSINL 150
Query: 148 FEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLK 207
FEGFLN LHILPSRK+ LTILKDVSG+IKP R+TLLLGPP+SGKTTLLLALAGKLD +LK
Sbjct: 151 FEGFLNSLHILPSRKKQLTILKDVSGVIKPSRMTLLLGPPSSGKTTLLLALAGKLDPNLK 210
Query: 208 VSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
SG VTYNGH M+EF+P+ TAAYISQHD HIGEMTVRETL+FS RCQGVGTR +ML EL+
Sbjct: 211 FSGNVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQGVGTRNDMLVELS 270
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGG 327
RREKAA IKPDPDIDV+MKA+ATEGQE NV+TDY LK+LGL+VCADT+VGDEM+RGISGG
Sbjct: 271 RREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADTLVGDEMLRGISGG 330
Query: 328 QRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPE 387
QRKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN KQ IHI GTAVISLLQPAPE
Sbjct: 331 QRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILDGTAVISLLQPAPE 390
Query: 388 TYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWV 447
TY+LFDDIILLS+GQIVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTSK DQKQYWV
Sbjct: 391 TYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQEVTSKNDQKQYWV 450
Query: 448 HKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKA 507
K++PY FVTVQEF+E FQS+ VGQ I EL TPFDKSKSH AAL YG + ELLKA
Sbjct: 451 QKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAARKYGVDKMELLKA 510
Query: 508 CISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVM 567
C +RE LLMKRNSFVYIFKL Q+ +A++ MTLF RT+MH++ +TD G+Y GALFF+ +
Sbjct: 511 CFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDAGVYLGALFFSLIA 570
Query: 568 VMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVI 627
+MFNG SE+SMTIAKLPVFYKQRD +F+PPWAYA+P+WILKIPI+F EV VWVF+TYYVI
Sbjct: 571 IMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFFEVGVWVFITYYVI 630
Query: 628 GLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLS 687
G DPN R FKQYFLLL NQMAS LFR IAA GRNM+VANTFGSFALL +F+LGG VLS
Sbjct: 631 GFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFALLTVFALGGIVLS 690
Query: 688 REDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPN--SIESLGVQVLKSRGFFAH 745
R+DIKKWW W YW SP+ Y QNA+VANEFLG SW N S +SLGVQ +KSRGFF H
Sbjct: 691 RDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSLGVQFIKSRGFFPH 750
Query: 746 AYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLST 805
AYW+W+G+GAL GF +LFNL FTLALT LN EKP A++++E E +++ GG +QLS
Sbjct: 751 AYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDEPERSDR---TGGAIQLSQ 807
Query: 806 HGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQ 865
+G S I E + +T+ E + KK+GMVLPFEPHS+TF++V+YSVDMPQ+MK Q
Sbjct: 808 NGSSHRTITENGV---GIRMTD-EANQNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQ 863
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925
G++DDKLVLL GVSGAF+PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I++SGYPK
Sbjct: 864 GIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPK 923
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
KQ+TFARISGYCEQNDIHSP VTVYESL+YSAWLRL PE+D ETRKMF+ EVMELVEL P
Sbjct: 924 KQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNP 983
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
L+Q+LVGLPGV+GLSTEQRKRLTI+VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 984 LRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1043
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIK 1105
DTGRTVVCTIHQPSID+FEAFDELFLMKRGG EIYVGPLGRHSCH++ YFE I G K+K
Sbjct: 1044 DTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVK 1103
Query: 1106 DGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQ 1165
DGYNPATWMLEV++ +QE++LGVDF+ IYK SELYRRNK++I++LS PGSKDL+F Q
Sbjct: 1104 DGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQ 1163
Query: 1166 YSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLN 1225
YSQS TQ +ACLWKQ SYWRNP YTAVRF FTTFIAL+ G++FWDLG KT +QD+ N
Sbjct: 1164 YSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFN 1223
Query: 1226 AMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQ 1285
+ GSM+ A++FLG Q +SVQP+V++ERTVFYRE+AAGMYS +P+A AQV++EIPYIF Q
Sbjct: 1224 SAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQ 1283
Query: 1286 SLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFY 1345
++VY + Y+M+ F+WTAAKFFWYIFFMY TL++FT+YGM+ VA+TPNHHIA++VS+ FY
Sbjct: 1284 AVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFY 1343
Query: 1346 GIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKMESG-ETVKHFL 1403
GIWN+FSGFI+PR R+PVWWRWYYW P++WTLYGLI SQF D++D E G +TV+ F+
Sbjct: 1344 GIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFV 1402
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455071|ref|XP_003597816.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486864|gb|AES68067.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2143 bits (5552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1407 (71%), Positives = 1183/1407 (84%), Gaps = 20/1407 (1%)
Query: 1 MEGNNDIYMASTSL-PRSISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKG 59
MEG DIY A+ SL RS + WR S + FS+SSREEDDEEALKWAA+EKLPTYNRL+KG
Sbjct: 63 MEGT-DIYRATNSLRARSSTVWRQSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKG 121
Query: 60 LLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEV 119
LLT S G A EVDV +L +E+Q+L+ +LV V E DNE FLLK+K R++RVG+D+P +EV
Sbjct: 122 LLTASHGGAHEVDVGDLAFKEKQKLLERLVRVAEEDNEGFLLKVKERVDRVGLDIPTIEV 181
Query: 120 RYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGR 179
RY++L I+AEA++ S+ALPSF T++ EG N+LHI+P++K+H+ IL+DVSGIIKP R
Sbjct: 182 RYQNLKIDAEAFVGSRALPSFINAATNVVEGVFNFLHIIPTKKRHVAILRDVSGIIKPRR 241
Query: 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+TLLLGPP SGKTTLLLAL+GKLDSS ++SG VTYNGH ++EFVP+RTAAYISQHD HIG
Sbjct: 242 MTLLLGPPGSGKTTLLLALSGKLDSSFQLSGNVTYNGHGLNEFVPQRTAAYISQHDVHIG 301
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREK A IKPDPDIDVYMKAIATEGQE+++ T
Sbjct: 302 EMTVRETLAFSARCQGVGSRYDMLSELSRREKVANIKPDPDIDVYMKAIATEGQESSIST 361
Query: 300 DYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADT+VGDEM+RGISGGQRKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 362 DYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 421
Query: 360 FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
FQIV+ +Q +HI GTAVISLLQPAPETY+LFDDIIL+S+GQ+VY GPRE VL+FFESM
Sbjct: 422 FQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 481
Query: 420 GFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQ 479
GFKCP+RKGVADFLQEVTSKKDQ QYWV +++PYR+VTV +F E FQSFH+G K+++EL
Sbjct: 482 GFKCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRYVTVTQFAEAFQSFHIGGKLAEELS 541
Query: 480 TPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMT 539
PFDK+KSH AALTT+ YG + ELLKA SRE LLMKRNSFVYIFKL Q+ +AL+ MT
Sbjct: 542 IPFDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQLFIMALIAMT 601
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFFRT+MH+D D G+YAGALFF V +MFNG SEISMTIAKLPV+YKQRD F+P WA
Sbjct: 602 LFFRTEMHRDDQDDAGVYAGALFFTLVTMMFNGMSEISMTIAKLPVYYKQRDLLFYPSWA 661
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAA 659
YAIPSWILKIP+S +EV++WVFLTYYVIG DPN GR FKQ+ +L +QMAS LFR IA+
Sbjct: 662 YAIPSWILKIPVSLVEVSLWVFLTYYVIGFDPNVGRMFKQFVVLFFMSQMASGLFRAIAS 721
Query: 660 TGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGH 719
GRNM+VANTFGSFA+L LF+LGGF+LSR+DIK WW W YW SP+ Y QNA++ANEFL +
Sbjct: 722 LGRNMIVANTFGSFAVLTLFALGGFILSRKDIKSWWIWGYWISPMMYGQNALMANEFLAN 781
Query: 720 SWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEK 779
SW N+ LG L +RGFF HAYW+W+G+G L GFV LFN F +AL L +K
Sbjct: 782 SWH----NATSDLGKDYLDTRGFFPHAYWYWIGVGGLAGFVFLFNAAFGVALAVLGPFDK 837
Query: 780 PRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMV 839
P A +T+ SE + + V+L SG S+T++ SH KK+GMV
Sbjct: 838 PSATITDNSEDDSSNYMTAQEVELPRIESSGR--------GDSVTVS----SHGKKKGMV 885
Query: 840 LPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
LPFEPHS+TFD++VYSVDMP +MK QGV++D+LVLL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 886 LPFEPHSITFDDIVYSVDMPAEMKEQGVTEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 945
Query: 900 TLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVLAGRKTGGYI G+IKVSGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 946 TLMDVLAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 1005
Query: 960 RLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP +DS TRKMFI EVM+LVEL L+ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 1006 RLPSGVDSNTRKMFIEEVMDLVELNSLRDSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1065
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EI
Sbjct: 1066 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1125
Query: 1080 YVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSEL 1139
YVGPLGRHS HL+ YFE+I GV KIKDGYNPATWMLEV+ +QE+ LGVDF+D+YK S+L
Sbjct: 1126 YVGPLGRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDL 1185
Query: 1140 YRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFT 1199
YRRNK LI++L PAPGSKDLHF Q+SQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1186 YRRNKQLIQELGVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1245
Query: 1200 TFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYRE 1259
TFIAL+ G++FWDLGGK +RQDLLNA+GSM+TA++FLG+Q SSVQP+V+VERTVF RE
Sbjct: 1246 TFIALMFGTMFWDLGGKHSRRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFNRE 1305
Query: 1260 KAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLF 1319
KAAGMYS +P+A +Q+++E+PY+F Q++ Y IVYAM+ FDWTA KF WY+FFMY TLL+
Sbjct: 1306 KAAGMYSALPYAFSQILVELPYVFAQAVTYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLY 1365
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLY 1379
FTFYGM+ VA+TPNHH+A+IV+ FY IWN+FSGF++PRP IP+WWRWYYWA P+AWT+Y
Sbjct: 1366 FTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIY 1425
Query: 1380 GLIASQFGDMEDKM--ESGETVKHFLE 1404
GL+ASQFGD+ M E G+ VK FL+
Sbjct: 1426 GLVASQFGDITTVMTTEGGKDVKTFLD 1452
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2140 bits (5544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1027/1404 (73%), Positives = 1191/1404 (84%), Gaps = 10/1404 (0%)
Query: 6 DIYMASTSLPRSISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSR 65
+IY A+ SL R+ S WR+S FSRSSR+EDDEEALKWAA+EKLPTYNRL+KGLL S+
Sbjct: 5 EIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQ 64
Query: 66 GEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLN 125
G A EVDV NLG QE+Q L+ +LV + E DNEKFLL+L+NRIERVGI +P++EVR+EHL
Sbjct: 65 GAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLT 124
Query: 126 IEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLG 185
I+AEA+I S+ALPSF F + E L L ILPSR++ TIL DVSGIIKP R+TLLLG
Sbjct: 125 IDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLG 184
Query: 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245
PP+SGKTTLLLAL+GKLD +LKV+GRVTYNGH MDEFVP+RTAAYISQHD HIGEMTVRE
Sbjct: 185 PPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRE 244
Query: 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305
TLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+
Sbjct: 245 TLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKI 304
Query: 306 LGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGLD+CADT+VGDEMIRGISGGQRKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNC
Sbjct: 305 LGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNC 364
Query: 366 FKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPK 425
KQ IHI GTAVISLLQPAPETYNLFDDIILLS+G+I+YQGPRE VLEFFES GF+CP+
Sbjct: 365 LKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPE 424
Query: 426 RKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKS 485
RKGVADFLQEVTSKKDQ+QYW KE PYRFVTV+EF E FQSFH G+K+ DEL +P+DK+
Sbjct: 425 RKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKT 484
Query: 486 KSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTK 545
KSH AALTT+ YG ++ELL A +SRE LLMKRNSFVY+FKL Q+A +A++ MTLF RT+
Sbjct: 485 KSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTE 544
Query: 546 MHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605
MHK+SV DG IY GALFF VM+MFNG +E++M IAKLPVFYKQRD F+P WAYA+P+W
Sbjct: 545 MHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTW 604
Query: 606 ILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMV 665
ILKIPI+F+EV VWVF+TYYVIG DPN R F+QY LLL NQMAS LFRLIA+ GRNM+
Sbjct: 605 ILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMI 664
Query: 666 VANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFT 725
V+NTFG+F LL+L +LGGF+LS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWKK
Sbjct: 665 VSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNV 724
Query: 726 PNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILT 785
S ESLGV VL +RGFF AYW+W+G GALFGF+LLFN G+TL L FLN +KP+A++
Sbjct: 725 TGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIV 784
Query: 786 EESESNEQDSTIGGTVQLSTHGES----GNDIRERNSSSHSLTLTE--AEGSHPKKRGMV 839
EES++ E GG ++LS S G +I SS+ S E A +H KK+GMV
Sbjct: 785 EESDNAE----TGGQIELSQRNSSIDQRGEEIGRSISSTSSAVREEAVAGANHNKKKGMV 840
Query: 840 LPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
LPF+P+S+TFD++ YSVDMP++MK QGV +DKL LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 841 LPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKT 900
Query: 900 TLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 959
TLMDVLAGRKTGGYI GNI +SGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 901 TLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 960
Query: 960 RLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RLP ++ SETR+MFI EVMELVEL PL+ +LVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 961 RLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1020
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG EI
Sbjct: 1021 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEI 1080
Query: 1080 YVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSEL 1139
YVGPLGR+SCHL++YFE I GV KIKDGYNPATWMLE + +QE LGVDF++IYK S+L
Sbjct: 1081 YVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDL 1140
Query: 1140 YRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFT 1199
YRRNK LI++LS+P PG+KDL+F Q+SQ FTQFLACLWKQ WSYWRNP YTAVRF FT
Sbjct: 1141 YRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFT 1200
Query: 1200 TFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYRE 1259
TFIAL+ G++FWDLG K +QDL NAMGSM+ A++FLGIQ SVQP+V VERTVFYRE
Sbjct: 1201 TFIALMFGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVVERTVFYRE 1260
Query: 1260 KAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLF 1319
+AAGMYS + +A AQV IEIPYIF Q++VY IVYAM+ F WTAAKFFWY+FFM+ TL++
Sbjct: 1261 RAAGMYSPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLFFMFFTLMY 1320
Query: 1320 FTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLY 1379
FTFYGM+ VA TPN +IA+IV+ FYG+WN+FSGFI+PR RIPVWWRWYYW P++WTLY
Sbjct: 1321 FTFYGMMAVAATPNQNIASIVAAAFYGLWNLFSGFIVPRNRIPVWWRWYYWICPVSWTLY 1380
Query: 1380 GLIASQFGDMEDKMESGETVKHFL 1403
GL+ SQFGD+ +++ +G TVK +L
Sbjct: 1381 GLVTSQFGDITEELNTGVTVKDYL 1404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75326590|sp|Q76CU2.1|PDR1_TOBAC RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1 gi|41052472|dbj|BAD07483.1| PDR-type ABC transporter 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2139 bits (5543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1387 (71%), Positives = 1168/1387 (84%), Gaps = 19/1387 (1%)
Query: 17 SISRWRTSSMGAFSRSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNL 76
S S WR + + FSRSSR+EDDEEALKWAA+EKLPT++RL+KGLL S+G A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGIDLP +EVRYEHLNI+A+AY+ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLL 196
LP+F F T+ E LN LHIL SRK+ LTILKD+SGIIKP R+TLLLGPP+SGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLD +LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316
G+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+CADT+V
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGT 376
GD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLS+G IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEV 496
TSKKDQ+QYW + PYRF+T +EF E +QSFHVG+K+ DEL TPFDK+K H AALT E
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGI 556
YG G++ELLK C RELLLMKRNSFVY+FK Q+ +AL+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEV 616
YAGALFF +M+MFNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +EV
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALL 676
+WV LTYYVIG DPN RF KQ+ LL+ NQMAS +FR I A GR M VA+TFGSFALL
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQV 736
+ F+LGGFVLSR+D+K WW W YW SP+ Y+ N+I+ NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDST 796
+KSRGFF AYW+W+G+GAL GF ++FN ++LAL +LN +KP+A+L E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSV 856
G T + G+ I E S K+GMVLPFEPHS+TFD+VVYSV
Sbjct: 803 -GEVSSQITSTDGGDSISE---------------SQNNKKGMVLPFEPHSITFDDVVYSV 846
Query: 857 DMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 916
DMPQ+MK QG +D+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 847 DMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDG 906
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
IK+SGYPKKQETFARISGYCEQNDIHSP+VTVYESL+YSAWLRLP ++D +TRKMF+ E
Sbjct: 907 EIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDE 966
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 967 VMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1026
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFE 1096
VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG EIYVGPLGRHSCHL+ YFE
Sbjct: 1027 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFE 1086
Query: 1097 AIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPG 1156
+ PGV KIK+GYNPATWMLEV+A +QE+ LG+DF+++YK S+LYRRNK+LI +L P PG
Sbjct: 1087 SNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPG 1146
Query: 1157 SKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGK 1216
SKDLHF QYSQS +TQ +ACLWKQHWSYWRNPAYTAVRF FTTFIAL+ G++FWDLG K
Sbjct: 1147 SKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTK 1206
Query: 1217 TEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVM 1276
K QDLLNAMGSM+ A++FLG+Q SSVQP+V++ERTVFYRE+AAGMYS IP+A QV
Sbjct: 1207 VSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVS 1266
Query: 1277 IEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHI 1336
IEIPYIFVQS+ Y IVYAM+ F+W KFFWY+F M+ TLL+FTFYGM+ VA+TPN ++
Sbjct: 1267 IEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNV 1326
Query: 1337 AAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKMESG 1396
A+IV+ FYG+WN+FSGFIIPRPR+PVWWRWYYWANP+AWTLYGL+ASQFGD++ K+
Sbjct: 1327 ASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDN 1386
Query: 1397 ETVKHFL 1403
ETV+ FL
Sbjct: 1387 ETVEQFL 1393
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.968 | 0.975 | 0.645 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.926 | 0.913 | 0.582 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.969 | 0.946 | 0.552 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.942 | 0.950 | 0.548 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.535 | 0.527 | 0.517 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.528 | 0.524 | 0.533 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.397 | 0.402 | 0.652 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.398 | 0.400 | 0.616 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.586 | 0.579 | 0.456 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.601 | 0.610 | 0.432 | 0.0 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4863 (1716.9 bits), Expect = 0., P = 0.
Identities = 922/1428 (64%), Positives = 1111/1428 (77%)
Query: 1 MEGNNDIYMASTSLPRSISRWRTSS-MGAFXXXXXXXXXXXALKWAAIEKLPTYNRLKKG 59
MEG + + AS S+ R+ S W+ S F AL+WAA+EKLPT++RL+KG
Sbjct: 1 MEGTS-FHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKV 117
+LT S G E+D+ LG Q+ ++L+ +L+ V + ++EK L KLK RI+RVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKP 177
EVR++HL +EAE ++ +ALP+F F ++ + FLN LH++P+RK+ TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHNMDEFVPERTAAYISQHDNH 237
GR+ LLLGPP +GRVTYNGH M+EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADT+VGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFE 417
TT+QIVN + +HI GTA+ISLLQPAPET+NLFDDIIL++ G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTSKKDQ QYW ++ PYRF+ V+EF E FQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVY 537
L PFDK+KSH AALTT+ YG G +EL+K SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFFRT+M K + DG +Y GALFF +M+MFNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY LL+ NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLSYAQNAIVANEFL 717
AA GRNM+VANT R+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWXXXXXXXXXXXXXXXXXXXALTFLNRL 777
GHSW + NS E+LGV LKSRGF HAYW+W ALTFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRG 837
KP+A++ EE S+E + +Q S+ S + EA G++ KKRG
Sbjct: 780 GKPQAVIAEEPASDETE------LQ----------------SARSEGVVEA-GAN-KKRG 815
Query: 838 MVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TFD VVYSVDMPQ+M QG +D+LVLL GV+GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 898 KTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVLAGRKTGGYI GNI +SGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRLP E+D RK+FI EVMELVEL PL+Q+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1078 EIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRS 1137
EIYVGPLG S HL++YFE+I G+ KI +GYNPATWMLEVS SQE ALGVDF+ +YK S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1138 ELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFF 1197
ELY+RNK LI++LS+PAPGSKDL+F QYSQS TQ +A LWKQHWSYWRNP YTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1198 FTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFY 1257
FT IAL+ G++FWDLGGKT+ RQDL NAMGSM+TA++FLG+Q +SVQP+V+VERTVFY
Sbjct: 1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFY 1235
Query: 1258 REKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTL 1317
RE+AAGMYS +P+A AQV IEIPY+ VQ++VY IVYAM+ F+WTA KFFWY+FFMY +
Sbjct: 1236 REQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSF 1295
Query: 1318 LFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWT 1377
L FTFYGM+ VA+TPNHHIA++VS+ FYGIWN+FSGF+IPRP +PVWW WYYW P+AWT
Sbjct: 1296 LTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWT 1355
Query: 1378 LYGLIASQFGDMEDKM-ESGETVKHFLE-----------IISILNMIF 1413
LYGLIASQFGD+ + M +S +VK F+ +++ +N+IF
Sbjct: 1356 LYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIF 1403
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4183 (1477.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 791/1359 (58%), Positives = 991/1359 (72%)
Query: 42 LKWAAIEKLPTYNRLKKGLL--TTSRGEAF--EVDVSNLGPQERQRLINKLVTVPEVDNE 97
L+WAA+E+LPTY+RL+KG+L T G+ +VDV+NL P+E++ L+ ++ E DNE
Sbjct: 59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNE 118
Query: 98 KFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHI 157
KFL +L+ R +RVGI++PK+EVRYE+L++E + AS+ALP+ + E L H+
Sbjct: 119 KFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHL 178
Query: 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGH 217
LPS+K+ + ILKD+SGIIKP R+TLLLGPP +SGR+TY GH
Sbjct: 179 LPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 238
Query: 218 NMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
EFVP++T AYISQHD H GEMTVRE+L FS RC GVGTRY++LTEL+RRE+ AGIKP
Sbjct: 239 EFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKP 298
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
DP+ID +MK+IA GQE +++TDY LK+LGLD+CADT+VGD M RGISGGQRKR+TTGEM
Sbjct: 299 DPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEM 358
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +Q +HI T VISLLQPAPET+ LFDDIIL
Sbjct: 359 LVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIIL 418
Query: 398 LSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVT 457
LS GQIVYQG R+ VLEFFE MGFKCP+RKG+ADFLQEVTSKKDQ+QYW +E PY +V+
Sbjct: 419 LSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVS 478
Query: 458 VQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMK 517
V +F+ GF SFH GQ+++ E + P+DK+K+H AAL T+ YG ++L KAC RE LLMK
Sbjct: 479 VHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMK 538
Query: 518 RNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEIS 577
RNSFVY+FK +QI ++L+ MT++FRT+MH +V DG + GALFF+ + +MFNG +E++
Sbjct: 539 RNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELA 598
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFF 637
T+ +LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ LTYY IG P+A RFF
Sbjct: 599 FTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFF 658
Query: 638 KQYFLLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q NQMA +LFR + A GR V+AN+ ++DI W W
Sbjct: 659 RQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTW 718
Query: 698 AYWCSPLSYAQNAIVANEFLGHSWKKFTPNS-----IESLGVQVLKSRGFFAHAYWFWXX 752
Y+ SP+ Y Q A+V NEFL W +PN+ +++G +LKSRGFF YWFW
Sbjct: 719 CYYTSPMMYGQTALVINEFLDERWG--SPNNDTRINAKTVGEVLLKSRGFFTEPYWFWIC 776
Query: 753 XXXXXXXXXXXXXXXXXALTFLNRLEKPRAI-LTEESESNEQDSTIGGTVQLSTHGESGN 811
AL +LN L +A + EE + + S H +G
Sbjct: 777 IGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGS----------HSGTGG 826
Query: 812 DIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDK 871
+ E S+S SH K+GMVLPF+P SL F+ V Y VDMP +MK QGV D+
Sbjct: 827 SVVELTSTS----------SHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDR 876
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFA 931
L LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G+I +SGYPK Q TFA
Sbjct: 877 LQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFA 936
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R+SGYCEQNDIHSP VTVYESL+YSAWLRL +ID++TR+MF+ EVMELVELKPL+ S+V
Sbjct: 937 RVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIV 996
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
GLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV
Sbjct: 997 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1056
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPA 1111
VCTIHQPSIDIFE+FDEL LMKRGG IY G LG HS LV YFEAI GV KIKDGYNPA
Sbjct: 1057 VCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPA 1116
Query: 1112 TWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAF 1171
TWML+V+ PS E + VDF+ I+ S + RRN+ LI++LS P PGS DL+F +Y+Q
Sbjct: 1117 TWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFS 1176
Query: 1172 TQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMF 1231
TQ AC WK +WS WR P Y A+RF T I +L G +FW G K EK QDL N G+M+
Sbjct: 1177 TQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMY 1236
Query: 1232 TAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSS 1291
A++FLG ++VQP V++ERTVFYREKAAGMYS IP+A++QV +EI Y +Q+ VY+
Sbjct: 1237 AAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTL 1296
Query: 1292 IVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIF 1351
I+Y+M+ +DWT KFFW+ ++M ++FT YGM+ VA+TPN+ IA I + F WN+F
Sbjct: 1297 ILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLF 1356
Query: 1352 SGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDME 1390
SGF+IPRP+IP+WWRWYYWA+P+AWTLYG+I SQ GD +
Sbjct: 1357 SGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRD 1395
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4102 (1449.0 bits), Expect = 0., P = 0.
Identities = 780/1412 (55%), Positives = 1013/1412 (71%)
Query: 13 SLPRSISRWRTSSMGAFXXXXXXXXXXX----ALKWAAIEKLPTYNRLKKGLLTTS-RGE 67
S+ RS+SR + F ALKWAAIEKLPTY+RL+ L+ +
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 68 AF-------EVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVR 120
+ EVDV+ L ++RQ+ I+ + V E DNE+ L KL+NRI+RVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRL 180
YEHL I+A+ Y +++LP+ ++ E L + I ++K LTILKD+SG+IKPGR+
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240
TLLLGPP VSG +TYNG+ +DEFVP +T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVGTRY++L ELARREK AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+C DT+VGD+M+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMG 420
QIV C +Q +H+N T ++SLLQPAPET++LFDDIIL+S GQIVYQGPR+ +LEFFES G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480
FKCP+RKG ADFLQEVTSKKDQ+QYWV+ RPY ++ V EF ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTL 540
PFDKS+ H+AAL + Y +RELLK+C +E LLM+RN+F Y+FK +QI +A + TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
F RT+M+ + D +Y GAL F ++ MFNGF+E++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAAT 660
++P+++L IP S LE W+ +TYY IG P+A RFFKQ+ L+ QMA++LFRLIA+
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720
R M++ANT + I WW WAYW SPL+YA N +V NE
Sbjct: 680 CRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPR 739
Query: 721 W--KKFTPNSIESLGVQVLKSRGFFAHAYWFWXXXXXXXXXXXXXXXXXXXALTFLNRLE 778
W K + NS LG VL + + W+W ALT+LN L
Sbjct: 740 WMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLG 799
Query: 779 KPRAILTEESESNEQDSTIGGTVQLST-HGESGNDIRERNSSSHSLTLTEAEGSHPKKRG 837
K +L EE + LST G ++ S S EA G K+G
Sbjct: 800 KKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAA--EASGGAGNKKG 857
Query: 838 MVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPF P +++FD+V Y VDMP +M+ QGV++ +L LL GV+GAFRPGVLTALMGVSGAG
Sbjct: 858 MVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAG 917
Query: 898 KTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957
KTTLMDVLAGRKTGGYI G++++SG+PK QETFARISGYCEQ DIHSP VTV ESL++SA
Sbjct: 918 KTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSA 977
Query: 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
+LRLP E+ + + MF+ +VMELVEL L+ S+VGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 978 FLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANP 1037
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
SIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG
Sbjct: 1038 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQ 1097
Query: 1078 EIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRS 1137
IY GPLG++S +V YFE+ PGV KI + YNPATWMLE S+ + E+ L VDF+++Y +S
Sbjct: 1098 VIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQS 1157
Query: 1138 ELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFF 1197
L++RNK+L+++LS P G+ DL+FA Q+SQ+ + QF +CLWKQ W+YWR+P Y VRF
Sbjct: 1158 ALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFI 1217
Query: 1198 FTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFY 1257
FT +LL+G++FW +GG DL +G+++ AI+F+GI CS+VQP+V+VERTVFY
Sbjct: 1218 FTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFY 1277
Query: 1258 REKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTL 1317
RE+AAGMYS +P+A++QV E+PY+ +Q++ YS IVYAM+ F+W A KFFW++F Y +
Sbjct: 1278 RERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSF 1337
Query: 1318 LFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWT 1377
L++T+YGM+TV++TPN +A+I ++ FYGI+N+FSGF IPRP+IP WW WYYW P+AWT
Sbjct: 1338 LYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWT 1397
Query: 1378 LYGLIASQFGDMEDKME--SGE---TVKHFLE 1404
+YGLI SQ+GD+E +++ G TVK ++E
Sbjct: 1398 VYGLIVSQYGDVETRIQVLGGAPDLTVKQYIE 1429
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4038 (1426.5 bits), Expect = 0., P = 0.
Identities = 751/1369 (54%), Positives = 994/1369 (72%)
Query: 42 LKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLL 101
L+WAA+++LPTY+R+++G+ GE E+ + NL E++ L+++LV E D E+F
Sbjct: 25 LRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLLLDRLVNSVENDPEQFFA 84
Query: 102 KLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSR 161
+++ R + V + PK+EVR+++L +E+ ++ S+ALP+ F ++ EG L +H++ +
Sbjct: 85 RVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALPTIPNFIINMAEGLLRNIHVIGGK 144
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHNMDE 221
+ LTIL +SG+I+P RLTLLLGPP SG++TYNG+++ E
Sbjct: 145 RNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKE 204
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG +Y+ML ELARREK AGI PD D+
Sbjct: 205 IIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDL 264
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
D++MK++A G E +++ +Y +K+LGLD CADT+VGDEMI+GISGGQ+KR+TTGE++VGP
Sbjct: 265 DIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGP 324
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
A LFMDEIS GLDSSTT QI+ + + H GT VISLLQP+PETY LFDD+IL+S G
Sbjct: 325 ARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEG 384
Query: 402 QIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEF 461
QI+YQGPR+ VL+FF S+GF CP RK VADFLQEVTSKKDQ+QYW RPYR+V +F
Sbjct: 385 QIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKF 444
Query: 462 TEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSF 521
E F+S+ G+K++ +L+ PFDK +H AAL+T YG + ELLK + + LMK+N+F
Sbjct: 445 AEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAF 504
Query: 522 VYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIA 581
+Y+FK +Q+ VAL+ MT+F RT MH +++ DG IY G+L+F+ V+++FNGF+E+ M +A
Sbjct: 505 IYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVA 564
Query: 582 KLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYF 641
KLPV YK RD F+P WAY +PSW+L IP S +E A WV +TYY IG DP RF +Q+
Sbjct: 565 KLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFL 624
Query: 642 LLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWC 701
L + +QM+ LFR++ + GR+M+VANT R+ I WW W YW
Sbjct: 625 LYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWI 684
Query: 702 SPLSYAQNAIVANEFLGHSWKKFTPN-SIESLGVQVLKSRGFFAHAYWFWXXXXXXXXXX 760
SPL YAQNA NEFLGH+W+K N + +SLG+ +LK R F+ YW+W
Sbjct: 685 SPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYT 744
Query: 761 XXXXXXXXXALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSS 820
L LN K +A+++ E E +E++ G E ++RE S
Sbjct: 745 VLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKKRKGD-------EFVVELREYLQHS 796
Query: 821 HSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880
S+ G + K RGMVLPF+P SL+F + Y VD+P +K QG+ +D+L LL ++G
Sbjct: 797 GSI-----HGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITG 851
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQN 940
AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I G++ +SG+PK+QETFARISGYCEQN
Sbjct: 852 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQN 911
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000
D+HSP +TV ESLL+SA LRLP +IDSET++ F+ EVMELVEL L +LVGLPGV GLS
Sbjct: 912 DVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLS 971
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
TEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSI
Sbjct: 972 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1031
Query: 1061 DIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAP 1120
DIFE+FDEL MKRGG IY GPLG+ SC L+ YFE+I GV+KIK G+NPA WML+V+A
Sbjct: 1032 DIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTAS 1091
Query: 1121 SQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWK 1180
++E LGVDF++IY+ S L +RNK LIE LSKP+ +K++ F +YSQS ++QF+ACLWK
Sbjct: 1092 TEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWK 1151
Query: 1181 QHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQ 1240
Q+ SYWRNP YTAVRFF+T I+L+LG+I W G K + +Q L NAMGSM+ A++F+GI
Sbjct: 1152 QNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGIT 1211
Query: 1241 YCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFD 1300
++ QP+VS+ER V YRE+AAGMYS +P+A AQV IE PY+ QS +YS+I YAM F+
Sbjct: 1212 NATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFE 1271
Query: 1301 WTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPR 1360
W+A KF WY+FFMY ++++FTFYGM+T AITPNH++A+I++ FY +WN+FSGF+IP R
Sbjct: 1272 WSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKR 1331
Query: 1361 IPVWWRWYYWANPIAWTLYGLIASQFGDMED--KMESG---ETVKHFLE 1404
IP+WWRWYYWANP+AWTLYGL+ SQ+GD E K+ G VK LE
Sbjct: 1332 IPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLE 1380
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2160 (765.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 404/781 (51%), Positives = 542/781 (69%)
Query: 42 LKWAAIEKLPTYNRLKKGLL--TTSRG--EAFEVDVSNLGPQERQRLINKLVTVPEVDNE 97
L+WAAIE+LPT++RL+KG+L T++ G E ++D++ L P++++ L+ +++ E DNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 98 KFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHI 157
KFL L+ R +RVGI++PK+EVRYE++++E + AS+ALP+ + E L + H+
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGH 217
LPS+++ + ILKD+SGI+KP R+TLLLGPP +SGR+TY GH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 218 NMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
EFVP++T AYISQHD H GEMTVRE L FS RC GVG+RY++++EL+RREK GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
DP ID +MK+IA GQE +++TDY LK+LGLD+CAD + GD M RGISGGQ+KR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +Q +HI+ T +ISLLQPAPET+ LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 398 LSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVT 457
LS GQIVYQGPR+ VLEFFE GF+CP+RKGVADFLQEVTSKKDQ+QYW +E+PY +V+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 458 VQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMK 517
V +F+ GF +FH GQK++ E + P+DK+K+H AAL T+ YG EL KAC RE LLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 518 RNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEIS 577
RNSFVY+FK +QI ++L+ MT++ RT+MH +V DG + GA+FF+ + VMFNG +E++
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFF 637
T+ +LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ LTYY IG P+A RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 638 KQYFLLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q NQMA +LFR + A GR V++N+ ++DI+ W W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 698 AYWCSPLSYAQNAIVANEFLGHSWKKFTPN-----SIESLGVQVLKSRGFFAHAYWFWXX 752
AY+ SP+ Y Q AIV NEFL W +PN + +++G +LKSRGFF YWFW
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWS--SPNYDTRINAKTVGEVLLKSRGFFTEPYWFWIC 778
Query: 753 XXXXXXXXXXXXXXXXXALTFLNRLEKPRAILTEES---ESNEQDSTIGGTVQLSTHGES 809
AL +LN L +A + EE + E T G V+L++
Sbjct: 779 IVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSNK 838
Query: 810 G 810
G
Sbjct: 839 G 839
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2105 (746.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 409/767 (53%), Positives = 519/767 (67%)
Query: 41 ALKWAAIEKLPTYNRLKKGLLTT-SRGEAF-------EVDVSNLGPQERQRLINKLVTVP 92
ALKWA+IEKLPTYNRL+ L+ + + VDV+ L +ERQ+ I+ + V
Sbjct: 50 ALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKVA 109
Query: 93 EVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFL 152
E DNE+ L KL+NRI+RVGI LP VEVRY+HL ++A+ Y ++LPS ++ E L
Sbjct: 110 EQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLLNAVRNMGEAAL 169
Query: 153 NYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRV 212
+ I ++K LTILKDVSGI+KP R+TLLLGPP VSG V
Sbjct: 170 GMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEV 229
Query: 213 TYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
TYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L ELARREK
Sbjct: 230 TYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREKD 289
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
AGI P+ D+D++MKA A +G ++++ITDY LK+LGLD+C DT+VGD+M+RGISGGQ+KRV
Sbjct: 290 AGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKRV 349
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
TTGEM+VGP LFMDEISTGLDSSTTFQIV C +Q +H+ T +ISLLQPAPET++LF
Sbjct: 350 TTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDLF 409
Query: 393 DDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERP 452
DDIILLS GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEVTSKKDQ+QYWV RP
Sbjct: 410 DDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRP 469
Query: 453 YRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRE 512
YR++ V EF F+ FHVG K+S+EL P+DKSKSH+AAL + Y + ELLK+C +E
Sbjct: 470 YRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKE 529
Query: 513 LLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNG 572
+LMKRNSF Y+FK +QI +A + TL+ RT+MH + D IY G+L FA ++ MFNG
Sbjct: 530 WMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNG 589
Query: 573 FSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPN 632
+E++MTI +LPVFYKQRD F PPW Y +P+++L IPIS E W+ +TYY IG P+
Sbjct: 590 LAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAPD 649
Query: 633 AGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIK 692
A RFFKQ+ ++ QMA+ +FR IA+T R M +ANT R +I
Sbjct: 650 AERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIP 709
Query: 693 KWWKWAYWCSPLSYAQNAIVANEFLGHSW-KKFTPNSIESLGVQVLKSRGFFAHAYWFWX 751
WW+WAYW SPLSYA NAI NE W K + NS LG VL F W+W
Sbjct: 710 VWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWI 769
Query: 752 XXXXXXXXXXXXXXXXXXALTFLNRLEKPRAILTEESESNEQDSTIG 798
ALT+L+ L K +AIL +E E E G
Sbjct: 770 GVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKGKAG 815
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2036 (721.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 375/575 (65%), Positives = 468/575 (81%)
Query: 835 KRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVS 894
KRGMVLPF P +++FD V Y VDMP++MK QGVS DKL LL V+G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 895 GAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954
GAGKTTLMDVLAGRKTGGYI G+I++SG+PK+QETFARISGYCEQNDIHSP VTV ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 955 YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
YSA+LRLP E+ + F+ EVMELVEL+ LK ++VGLPG++GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 1075 GGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIY 1134
GG IY GPLG++S ++ YF+AI GV KIK+ YNPATWMLEVS+ + E L +DF++ Y
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 1135 KRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAV 1194
K S LY++NK+L+++LS P G+ DL+F+ ++SQS QF +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 1195 RFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERT 1254
RFFFT A++LGSIFW +G K E DL +G+M+ A++F+G+ SSVQP+++VER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 1255 VFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMY 1314
VFYRE+AA MYS +P+ALAQV+ EIPY+ +Q+ Y+ I+YAMM F+WT AKFFW+ F +
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1315 VTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPI 1374
++ L+FT+YGM+TVA+TPN +AA+ + FYG++N+FSGF+IPRPRIP WW WYYW P+
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1375 AWTLYGLIASQFGDMEDK-----MESGETVKHFLE 1404
AWT+YGLI SQ+GD+ED M + T+K ++E
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIE 1376
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1889 (670.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 354/574 (61%), Positives = 445/574 (77%)
Query: 834 KKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGV 893
+K+GM+LPF+P ++TF V Y VDMP++M+ QGV + +L LL+ VSG F PGVLTAL+G
Sbjct: 813 EKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGS 872
Query: 894 SGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESL 953
SGAGKTTLMDVLAGRKTGGY G+I++SG+PK+Q+TFARISGY EQNDIHSP VTV ESL
Sbjct: 873 SGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESL 932
Query: 954 LYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVEL 1013
+SA LRLP EI E +K F+ +VM LVEL L+ +LVGLPG +GLSTEQRKRLTIAVEL
Sbjct: 933 WFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVEL 992
Query: 1014 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMK
Sbjct: 993 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1052
Query: 1074 RGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDI 1133
RGG IY G LG HS LV YF+ I GV I GYNPATWMLEV+ P+ E ++F+D+
Sbjct: 1053 RGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADL 1112
Query: 1134 YKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTA 1193
YK+S+ +R ++ I+ LS P GS+ + F ++YSQ+ +QFL CLWKQ+ YWR+P Y
Sbjct: 1113 YKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNL 1172
Query: 1194 VRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVER 1253
VR FTT A +LG++FWD+G K QDL+ MG++++A +FLG+ SSVQPIVS+ER
Sbjct: 1173 VRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIER 1232
Query: 1254 TVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFM 1313
TVFYREKAAGMY+ IP+A AQ ++EIPYI Q+++Y I Y + F+ T +KF Y+ FM
Sbjct: 1233 TVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFM 1292
Query: 1314 YVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANP 1373
++T +FTFYGM+ V +TPN H+AA++S+ FY +WN+ SGF++ +P IPVWW W+Y+ P
Sbjct: 1293 FLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICP 1352
Query: 1374 IAWTLYGLIASQFGDMEDKMESG---ETVKHFLE 1404
+AWTL G+I SQ GD+E + TVK F+E
Sbjct: 1353 VAWTLQGVILSQLGDVESMINEPLFHGTVKEFIE 1386
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 399/875 (45%), Positives = 537/875 (61%)
Query: 41 ALKWAAIEKLPTYNRLKKGLLT------TSRGEAFEVDVSNLGPQERQRLINKLVTVPEV 94
AL+WA IE+LPT R++ LL T +G VDV+ LG ER +I KL+ E
Sbjct: 58 ALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRV-VDVTKLGAVERHLMIEKLIKHIEN 116
Query: 95 DNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIAS-KALPSFTKFYTSIFEGFLN 153
DN K L K++ RI+RVG++LP +EVRYE L + AE + KALP T + T+ + L+
Sbjct: 117 DNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALP--TLWNTA--KRVLS 172
Query: 154 YLHILPSRKQH---LTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSG 210
L L K H + I+ DV+GIIKPGRLTLLLGPP SG
Sbjct: 173 ELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSG 232
Query: 211 RVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
++YNGH +DEFVP++T+AYISQ+D HI EMTVRET+ FSARCQGVG+R +++ E+++RE
Sbjct: 233 EISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKRE 292
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRK 330
K GI PD ++D YMKAI+ EG + ++ TDY LK+LGLD+CA+ ++GD M RGISGGQ+K
Sbjct: 293 KEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKK 352
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390
R+TT EM+VGP ALFMDEI+ GLDSST FQIV +Q HI+ T ++SLLQPAPE+Y+
Sbjct: 353 RLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYD 412
Query: 391 LFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKE 450
LFDDI+L++ G+IVY GPR VL FFE GF+CP+RKGVADFLQEV SKKDQ QYW H++
Sbjct: 413 LFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHED 472
Query: 451 RPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACIS 510
PY FV+V+ ++ F+ +G+KI D L P+D+SKSH+ AL+ VY EL ACIS
Sbjct: 473 LPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACIS 532
Query: 511 RELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMF 570
RE LLMKRN FVYIFK Q+ A + MT+F RT+M D + G Y ALFFA ++++
Sbjct: 533 REYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID-IIHGNSYMSALFFALIILLV 591
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLD 630
+GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW L+YYVIG
Sbjct: 592 DGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYT 651
Query: 631 PNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXRED 690
P A RFFKQ+ LL A + + ++FR +AA + +V + T
Sbjct: 652 PEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPS 711
Query: 691 IKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFW 750
+ W KW +W +PLSY + + NEFL W + PN+ +LG +L++RG + Y +W
Sbjct: 712 MPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF-TLGRTILQTRGMDYNGYMYW 770
Query: 751 XXXXXXXXXXXXXXXXXXXALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESG 810
ALTFL RA+++++ S Q GT + ST S
Sbjct: 771 VSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQ-----GT-EKSTEDSS- 823
Query: 811 NDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMP-QQMKLQGVSD 869
+R++ + S T E + P K + + F+ + D V D Q KLQ +SD
Sbjct: 824 --VRKKTTDSPVKTEEEDKMVLPFKP-LTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSD 880
Query: 870 DK-------LVLLNGVSGAFRPGVLTALMGVSGAG 897
L L GVSGA + +L L G +G
Sbjct: 881 ITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSG 915
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1824 (647.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 386/892 (43%), Positives = 544/892 (60%)
Query: 41 ALKWAAIEKLPTYNRLKKGLLTTSRGEAFE-----VDVSNLGPQERQRLINKLVTVPEVD 95
AL+WA I++LPT+ RL+ L+ GE E VDV+ LG ER +I KL+ E D
Sbjct: 24 ALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGAMERHLMIEKLIKHIEND 82
Query: 96 NEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIAS-KALPSFTKFYTSIFEGFLNY 154
N K L K++ R+ERVG++ P +EVRYEHL +EA + KALP+ + S+ FL+
Sbjct: 83 NLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTL---WNSLKHVFLDL 139
Query: 155 LHI--LPSRKQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRV 212
L + + + + ++ IL DVSGII PGRLTLLLGPP G +
Sbjct: 140 LKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEI 199
Query: 213 TYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+YNGH ++E VP++T+AYISQHD HI EMT RET+ FSARCQGVG+R +++ E+++REK
Sbjct: 200 SYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKD 259
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
GI PDP+ID YMKAI+ +G + ++ TDY LK+LGLD+CA+T+VG+ M RGISGGQ+KR+
Sbjct: 260 GGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRL 319
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
TT EM+VGP ALFMDEI+ GLDSST FQI+ +Q HI T +SLLQPAPE+Y+LF
Sbjct: 320 TTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLF 379
Query: 393 DDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERP 452
DDI+L++ G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV SKKDQ QYW+H+ P
Sbjct: 380 DDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLP 439
Query: 453 YRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRE 512
+ FV+V ++ F+ +G+KI + L P+D SK+H+ AL+ VY + EL +ACISRE
Sbjct: 440 HSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISRE 499
Query: 513 LLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNG 572
LLMKRN FVY+FK Q+ A++ MT+F RT+M D + G Y LFFATV+++ +G
Sbjct: 500 FLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSYMSCLFFATVVLLVDG 558
Query: 573 FSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPN 632
E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW LTYYVIG P
Sbjct: 559 IPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPE 618
Query: 633 AGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTXXXXXXXXXXXXXXXXXXREDIK 692
RFF+Q+ +L A + + ++FR IAA + V A T D+
Sbjct: 619 PYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMP 678
Query: 693 KWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWXX 752
W KW +W +P+SYA+ + NEFL W+K P ++ +LG +L+SRG Y +W
Sbjct: 679 GWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNV-TLGRTILESRGLNYDDYMYWVS 737
Query: 753 XXXXXXXXXXXXXXXXXALTFLNRLEKPRAILTEESESNEQ---DSTIGGTVQLSTHGES 809
AL+FL R +++++ S Q DS++ L + ++
Sbjct: 738 LSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSSVKKNKPLDSSIKT 797
Query: 810 GNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGV-S 868
D + LT+T + ++ + +P E ++E + ++ G
Sbjct: 798 NEDPGKMILPFKPLTITFQDLNYY----VDVPVEMKGQGYNEKKLQL----LSEITGAFR 849
Query: 869 DDKLVLLNGVSGAFRPGVLTALMG--VSG--AGKTTLMDVLAGRKTGGYITG 916
L L G+SGA + +L L G SG G+ + L ++T ++G
Sbjct: 850 PGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSG 901
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5846 | 0.9574 | 0.9390 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7007 | 0.9672 | 0.9512 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6834 | 0.9685 | 0.9754 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6841 | 0.9637 | 0.9583 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7188 | 0.9546 | 0.9539 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7060 | 0.9525 | 0.9505 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7000 | 0.9672 | 0.9512 | N/A | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3181 | 0.8004 | 0.8637 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5326 | 0.9518 | 0.9426 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1433 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-99 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-71 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-47 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-42 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-37 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-28 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-24 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-21 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-11 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-07 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 9e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-06 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-06 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 7e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.001 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.001 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 0.001 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.001 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.002 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.002 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.002 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.002 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.002 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.002 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.003 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.003 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 0.003 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 0.003 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.003 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.003 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.003 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.004 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.004 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.004 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.004 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.004 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2047 bits (5305), Expect = 0.0
Identities = 860/1425 (60%), Positives = 1081/1425 (75%), Gaps = 34/1425 (2%)
Query: 11 STSLPRSISRWRTSSMGAFS-------RSSREEDDEEALKWAAIEKLPTYNRLKKGLLTT 63
S+ RS+SR + FS R+S ++DEEALKWAAIEKLPTY+RL+ ++ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLP 115
++ EVDV+ L +RQ+ I+ + V E DNEKFL K +NRI+RVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 KVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGII 175
VEVR+EHL +EA+ YI S+ALP+ +I E L L I ++K LTILKD SGII
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHD 235
KP R+TLLLGPP+SGKTTLLLALAGKLD SLKVSG +TYNG+ ++EFVP +T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
H+G MTV+ETL FSARCQGVGTRY++L+ELARREK AGI P+ ++D++MKA A EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLD+C DT+VGDEMIRGISGGQ+KRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEF 415
SSTT+QIV C +Q +H+ T ++SLLQPAPET++LFDDIILLS GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKIS 475
FES GFKCP+RKG ADFLQEVTSKKDQ+QYW + +PYR+++V EF E F+SFHVG ++
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVAL 535
+EL PFDKS+SH+AAL Y + ELLKAC +E LLMKRN+FVY+FK +QI VA
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFF 595
+ T+F RT+MH + DG +Y GAL F+ ++ MFNGF+E+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFR 655
PPW + +P+++L IPIS +E VWV +TYY IG P A RFFKQ L+ QMA+ +FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 LIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANE 715
LIA+ R M++ANT G+ LL++F LGGF+L + +I WW+WAYW SPLSY NA+ NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFL 774
W K ++ LG VL F W+W+G+GAL GF +LFN+ FTLALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 NRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSL----------T 824
N L K +AI++EE+ + LS+ GN+ RE S +
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSAD--GNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 825 LTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRP 884
L A G P KRGMVLPF P +++FD+V Y VDMP +MK QGV++D+L LL V+GAFRP
Sbjct: 847 LEAANGVAP-KRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHS 944
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I++SG+PKKQETFARISGYCEQNDIHS
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004
P VTV ESL+YSA+LRLP E+ E + MF+ EVMELVEL LK ++VGLPGV+GLSTEQR
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1064
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 1065 AFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEV 1124
AFDEL LMKRGG IY GPLGR+S ++ YFEAIPGV KIK+ YNPATWMLEVS+ + EV
Sbjct: 1086 AFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145
Query: 1125 ALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWS 1184
LG+DF++ YK S LY+RNK+L+++LS P PG+ DL+FA QYSQS + QF +CLWKQ W+
Sbjct: 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205
Query: 1185 YWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSS 1244
YWR+P Y VRFFFT AL++G+IFW +G K DL +G+M+ A++F+GI CS+
Sbjct: 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCST 1265
Query: 1245 VQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAA 1304
VQP+V+VERTVFYRE+AAGMYS +P+A+AQV+ EIPY+ +Q+ Y+ IVYAM+ F+WTAA
Sbjct: 1266 VQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAA 1325
Query: 1305 KFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVW 1364
KFFW+ F + + L+FT+YGM+TV++TPN +AAI + FYG++N+FSGF IPRP+IP W
Sbjct: 1326 KFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385
Query: 1365 WRWYYWANPIAWTLYGLIASQFGDMEDK-----MESGETVKHFLE 1404
W WYYW P+AWT+YGLI SQ+GD+ED T+K +++
Sbjct: 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQ 1430
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1167 bits (3022), Expect = 0.0
Identities = 401/1378 (29%), Positives = 645/1378 (46%), Gaps = 139/1378 (10%)
Query: 92 PEVDNEKFLLKLKNRIERVGIDLP--KVEVRYEHLNIEAEAYIASKALPSFT----KFYT 145
E + + ++ + I+ I K+ V Y++L+ A S P+F K T
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILT 59
Query: 146 SIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS 205
F + ILK + G+IKPG LT++LG P SG +TLL +A D
Sbjct: 60 RGFRKLKK-----FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF 114
Query: 206 LK-VSGRVTYNGHNMDEFVPERTA--AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEM 262
V G +TY+G +E Y ++ D H +TV ETL F+ARC+ R +
Sbjct: 115 HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDG 174
Query: 263 LTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322
++ + I D Y+ GL +T VG++ +R
Sbjct: 175 VSREEYAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVR 208
Query: 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL 382
G+SGG+RKRV+ E +G A D + GLDS+T + + K + +I T ++++
Sbjct: 209 GVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIY 268
Query: 383 QPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
Q + + Y LFD +I+L G +Y GP + ++FE MGFKCP R+ ADFL +TS +
Sbjct: 269 QCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-E 327
Query: 443 KQYWVHKERP-YRFVTVQEFTEGFQSFHVGQKISDELQTPFDK---------------SK 486
+Q E+ R T QEF +++ ++ E+ D+ +K
Sbjct: 328 RQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK 385
Query: 487 SHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKM 546
+ + Y +K C++R L MK N +F + +AL+ ++F+
Sbjct: 386 QSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK 445
Query: 547 HKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606
+ +D GALFFA + F+ EI+ P+ K R + + P A AI S I
Sbjct: 446 ---NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASII 502
Query: 607 LKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVV 666
+IP +E V+ + Y+++ AGRFF +L S LFR I A + +
Sbjct: 503 SEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSE 562
Query: 667 ANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSW--KKF 724
A T + LL L GF + R + W KW Y+ +PL+YA +++ NEF G + ++
Sbjct: 563 AMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQY 622
Query: 725 TPNS--IESLGV--QVLKSRG------------FFAHAY-----WFWLGLGALFGFVLLF 763
P+ ++LGV +V G + ++ W G + GF + F
Sbjct: 623 VPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFF 682
Query: 764 NLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSL 823
+ L F ++ IL + + + G T + NDI
Sbjct: 683 FFVYILLTEFNKGAKQKGEILVFR-RGSLKRAKKAGE----TSASNKNDI---------- 727
Query: 824 TLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKL-----------QGVSDDKL 872
+ G VL + D+V DM ++ + +K
Sbjct: 728 -----------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKR 776
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG ++ +F R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
GY +Q D+H P TV ESL +SA+LR P + + ++ EV++L+E++ ++VG
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 993 LPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ +
Sbjct: 897 VPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPA 1111
+CTIHQPS +FE FD L L+++GG +Y G LG +S +++YFE G K + NPA
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPA 1014
Query: 1112 TWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFA---AQYSQ 1168
WMLEV + D+ ++++ S Y+ K+ ++ L ++D + ++Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1169 SAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMG 1228
S + QF LW+ YWR P Y +FF T F AL +G F+ +G Q L N M
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMF 1131
Query: 1229 SMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLV 1288
++F A + + P V+ RE+ + +S + + AQ+ +EIPY V +
Sbjct: 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191
Query: 1289 YSSIVYAMMEFDWTAAK-------FFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVS 1341
+ I Y + F W A+K + + L+F+ G + ++ PN AA+++
Sbjct: 1192 FFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLA 1251
Query: 1342 TLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKMESGETV 1399
+L + + F G + P R+P +W + Y +P + + L+++ D+ + E +
Sbjct: 1252 SLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELL 1309
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 8e-99
Identities = 111/239 (46%), Positives = 140/239 (58%), Gaps = 47/239 (19%)
Query: 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 904 VLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
VLAGRKT G ITG I ++G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 964 EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 325 bits (836), Expect = 3e-97
Identities = 162/535 (30%), Positives = 265/535 (49%), Gaps = 34/535 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKVSGYPKKQETFAR 932
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
IS Y +Q+D+ P +TV E L++ A LR+P + + ++ + EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 993 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPA 1111
+CTIHQPS ++FE FD++ LM G Y+G V +F + + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDLG--HPCPENYNPA 272
Query: 1112 TWMLEVSA--PSQEVALGVDFSDIY----------KRSELYRRNKSLIEDLSKPAPGSKD 1159
+ ++V A P E I L K + +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332
Query: 1160 LHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEK 1219
+ Y+ S +TQF A L + S R+P VR T A+L+G I+ G +
Sbjct: 333 IG----YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388
Query: 1220 RQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEI 1279
Q++ G++F + + Q V + + E VF RE +G+Y + LA+ + E+
Sbjct: 389 VQNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAEL 445
Query: 1280 PYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAI 1339
P + +++SI Y M+ A F ++F + + T +G L + +A
Sbjct: 446 PLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505
Query: 1340 VSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLY---GLIASQFGDMED 1391
V F + +F GF I IPV+++W + ++W Y GL+ +Q+ D+++
Sbjct: 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (616), Expect = 5e-73
Identities = 96/237 (40%), Positives = 138/237 (58%), Gaps = 45/237 (18%)
Query: 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 905
+L+F + +V S LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 906 AGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEI 965
AGR+TG ++G + ++G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 966 DSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ +G IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV-IYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 3e-71
Identities = 161/634 (25%), Positives = 280/634 (44%), Gaps = 65/634 (10%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 220
+ +LK+VSG+ KPG L ++G +GKTTL+ ALA + +K SG V NG +D
Sbjct: 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+AY+ Q D I +TVRE L F A M + ++EK +
Sbjct: 94 AKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPRRVTKKEKRERVD---- 142
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE-MIRGISGGQRKRVTTG-EMM 338
V+ LGL CA+T +G ++G+SGG+RKR+ E++
Sbjct: 143 ---------------EVLQA-----LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL 182
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398
P L LF DE ++GLDS + +V K + T + ++ QP+ E + LFD IIL+
Sbjct: 183 TDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIHQPSSELFELFDKIILM 240
Query: 399 SNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTV 458
+ G++ Y G + + FF +G CP+ ADF +V + + ++ R +
Sbjct: 241 AEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE---NESR----ERI 293
Query: 459 QEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKR 518
++ + F +G+ + K+ L + + ++ L+KR
Sbjct: 294 EKICDSFAVSDIGRDMLVNTNLWSGKAGG----LVKDSENMEGIGYNASWWTQFYALLKR 349
Query: 519 NSFVYIFK--------LIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALF-FATVMVM 569
S++ + + LIQ A++ ++ + + V + GALF F T M
Sbjct: 350 -SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTF 405
Query: 570 FNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGL 629
N F I++ A+LPVF ++ + AY + I ++P+ + A++ +TY++IGL
Sbjct: 406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGL 465
Query: 630 DPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSRE 689
A F FL+ +A++ LI+ + +A T G ++ GGF ++ +
Sbjct: 466 RSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSD 525
Query: 690 DIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIE----SLGVQVLKSRGFFAH 745
I ++KW + S Y ++ N++ + T + S G +L++ F
Sbjct: 526 SIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585
Query: 746 AYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEK 779
+L L L + F L AL R ++
Sbjct: 586 DL--YLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 1e-54
Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 6/215 (2%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNIKVSGYPKKQ 927
+ +LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
+ F + Y Q+DI P +TV E+L Y+A LRLP + RK +E V L+ L
Sbjct: 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDLA 132
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ +G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
R V+ TIHQP D+F FD + L+ G +Y G
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-54
Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 7/216 (3%)
Query: 1172 TQFLACLWKQHWSYWRNPAYT-AVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSM 1230
TQ A L ++ WR+P+ R +AL+ G++F +L LN G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS----LGGLNRPGLL 56
Query: 1231 FTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYS 1290
F +I+F + + P+ ER V RE A+ +YS + LA++++E+P +Q++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1291 SIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNI 1350
IVY M+ + +FF ++ + +T L + G+ A+ P+ A+ + L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1351 FSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQF 1386
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-47
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 8/216 (3%)
Query: 503 ELLKACISRELLLMKRNSFV-YIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGAL 561
LKA + RE L R+ + +++LIQ +ALV+ T+F D+ G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFATVMVMFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWV 620
FF+ + F+ + IS I + V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFS 680
+ Y+++GL + RFF +LL AS L IAA + A+ G LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEF 716
L GF + + + W +W Y+ +PL+YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 4e-44
Identities = 117/445 (26%), Positives = 224/445 (50%), Gaps = 41/445 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+LNGV+G PG + A++G SG+GK+TL++ LAGR G TG I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL 993
G+ Q+DI P +TV E+L++ + LRLP + + + + V+ + L + +++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1053
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1054 TIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATW 1113
++HQPS +++ FD + ++ G ++ G G + ++YFE++ NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRC-LFFGK-GSDA---MAYFESVGFSPSFP--MNPADF 314
Query: 1114 MLEVS---------------------APSQEVALGVDFSDIYKRSELYRRNKSLIEDLSK 1152
+L+++ S L + S + N + S
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1153 PAPGSKD-LHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFW 1211
S D + + ++Q F+ L K+ ++ ++ +R F ALL G ++W
Sbjct: 375 KEHRSSDRISISTWFNQ--FSILLQRSLKER----KHESFNTLRVFQVIAAALLAGLMWW 428
Query: 1212 DLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWA 1271
+D+ + +G +F +F G+ + + ER +F +E+A+GMY+ +
Sbjct: 429 H-----SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYF 483
Query: 1272 LAQVMIEIPYIFVQSLVYSSIVYAM 1296
+A+++ ++P + ++ ++ Y M
Sbjct: 484 MARIVGDLPMELILPTIFLTVTYWM 508
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-43
Identities = 70/245 (28%), Positives = 106/245 (43%), Gaps = 17/245 (6%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP--KK 926
L+GVS PG + L+G +GAGKTTL+ +LAG +G I V GY K+
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKE 72
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
R GY Q P +TV E+L + A L + ++E R I E++EL L+
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDK 129
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 130 ANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKD 1106
G + + E D + ++ G I G L F +E +
Sbjct: 185 EGGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTPEE----LKEKFGGKGVIELEPE 239
Query: 1107 GYNPA 1111
A
Sbjct: 240 RLELA 244
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 38/242 (15%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
IL DVS ++ G++ +LG SGKTTLL A++G+++ SG++ +NG ++
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AY+ Q D + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG-EMMVGPALAL 345
A T +G +++GISGG+R+RV+ +++ P + L
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405
+DE ++GLDS T +V+ Q N ++++ QP + + LFD I+LLS+G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 406 QG 407
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 8e-38
Identities = 137/538 (25%), Positives = 246/538 (45%), Gaps = 66/538 (12%)
Query: 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 222
Q TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N +
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ 137
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ +RT +++Q D +TVRETL F + L L +
Sbjct: 138 ILKRTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK-------------- 171
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG-EMMVGP 341
+ QE ++ + + LGL C +T++G+ IRGISGG+RKRV+ EM++ P
Sbjct: 172 ------SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 225
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
+L L +DE ++GLD++ +++V T V S+ QP+ Y +FD +++LS G
Sbjct: 226 SL-LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
Query: 402 QIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEF 461
+ ++ G + +FES+GF ADFL ++ + Q +E+P Q
Sbjct: 284 RCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSL 340
Query: 462 TEGFQSFHVGQ-KISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKR-- 518
+ + + K + E+ + + +T+ + + R + ++ +L++R
Sbjct: 341 VASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSL 400
Query: 519 -----NSF--VYIFKLIQIASVA-LVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMF 570
SF + +F++I A +A L++ FR V D G LFF + +F
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWWHSDFR------DVQD---RLGLLFF---ISIF 448
Query: 571 NGFSEISMTIAKLP----VFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYV 626
G ++ P +F K+R + +Y + + +P+ + +++ +TY++
Sbjct: 449 WGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWM 508
Query: 627 IGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGF 684
GL P G F +LL ++ L + A + A+T + +L GGF
Sbjct: 509 AGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-37
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGT 376
G+E +RGISGG+RKRV+ E +V A L D + GLDSST +I+ C + + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
+SL Q + E Y+LFD +++L G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-34
Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 51/291 (17%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 221
T L VS ++PG + LLGP +GKTTLL LAG L + SG + G+++ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ R Y+ Q + E+TVRE L F AR G+
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---------------------- 109
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
+EA + L++ GL+ ++ +R +SGG ++R++ ++
Sbjct: 110 ------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALALL 152
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVIS--LLQPAPETYNLFDDIIL 397
L +DE ++GLD + +I ++ T ++S +L+ E L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 398 LSNGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSKKDQKQYW 446
L++G+I+ +G E + E F G P+R +A+ L+ + K +++
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-34
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 157 ILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ + ILKD SG++KPG + L+LG P SG +TLL ALA + + ++ V G + YNG
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 217 HNMDEF--VPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255
EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKVSGYPKKQ 927
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K+
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKE 76
Query: 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
E + Y + D+H P +TV E+L ++ + G
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------GNEF------- 115
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 116 ----------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1046 D-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
D T +++Q S +I++ FD++ ++ G +IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA- 931
++ +S G + L+G +GAGKTT + +L G R T +G ++GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 932 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
+ GYC Q D +TV E L + A L+ P+ K + ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1051 VVCTIHQPSIDIFEAF-DELFLMKRG 1075
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-29
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 152 LNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
L K +LK+VSG KPG LT ++GP +GK+TLL ALAG+ + L VSG
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGE 67
Query: 212 VTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
V NG +D+ + Y+ Q D +TVRETL F+A+ +G+
Sbjct: 68 VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP--KKQ 927
K L+GVS PG+ L+G +GAGKTTLM +LA G I++ G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
+ R GY Q P TV E L Y AWL+ I S+ K + EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET---F 930
L+ +S + G ++G +G+GK+TL+ +L G G +G + V G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 931 ARISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
R G QN P F TV E + + PE + E R + E +ELV L+
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
L+ LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKP 780
W K S E+LG VLKSRG F AYW+W+G+GAL GF +LFN+ FTLALT+LN L K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAIL 784
+AI+
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 27/217 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQET 929
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + ++ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 930 FARISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEIDSETRKMFIGEVMELVELK 984
A+ Y Q+ +TVYE +L + P + D E + E +EL+ L+
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1043
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGY 1077
+ G TVV +H D+ A D L L+K G
Sbjct: 185 NREKGLTVVMVLH----DLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L VS +PG A++G +GAGK+TL+ + G + T +G+I+V G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 933 ISGYCEQN---DIHSPFVTVYESLLYSAWLRLPP-EIDSETRKMFIGEVMELVELKPLKQ 988
I GY Q D P ++V + +L + S+ K + E +E V L L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRG 1075
T++ H + + E FD + L+ R
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 6e-23
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 53/205 (25%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP--KKQETF 930
L+ +S G + L+G +GAGKTTL+ ++ G + G IKV G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 8e-23
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 49/215 (22%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSG 922
V +L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
Query: 923 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
K+ AR Y Q +EL+
Sbjct: 66 LSPKE--LARKIAYVPQ-------------------------------------ALELLG 86
Query: 983 LKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
L L + LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 87 LAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1043 NTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
G+TVV +H ++ D + L+K G
Sbjct: 142 RLARERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 8e-23
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925
VS +L +S + G +TAL+G +GAGK+TL+ + G +G IK+ G P
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68
Query: 926 KQETFARISGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEIDSETRKMFIG 975
++ GY Q S +TV + Y W R + D E +
Sbjct: 69 RKRRKRLRIGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VD 121
Query: 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
E +E V ++ L+ +G LS Q++R+ +A L NP ++ +DEP +G+D
Sbjct: 122 EALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++ G+TV+ H + + FD + + R
Sbjct: 177 EIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 9e-23
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 863 KLQGVS------DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 914
+L+ +S +K+ L GVS + G A++G SG+GK+TL+++L G R T G +
Sbjct: 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61
Query: 915 T-GNIKVSGYPKKQETFAR---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSE 968
+S +K+ R I G+ Q+ + P +T E++ LP +
Sbjct: 62 RVDGTDISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGV 112
Query: 969 TRKMFIGEVMELVELKPLKQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+K EL+E VGL S LS Q++R+ IA L +P II D
Sbjct: 113 PKKERRERAEELLER-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD 165
Query: 1024 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
EPT LD+ VM +R + G T+V H P ++ E D + ++ G
Sbjct: 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVIS 380
+RG+SGG+RKRV+ +V LF+DE ++GLDSS+ Q+++ ++ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYNLFDDIILLSNGQIVYQG 407
+ QP+ E + LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 25/223 (11%)
Query: 862 MKLQGVSDD--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 916
++L+G+S + L+ +S PG AL+G SG GKTTL+ ++AG R G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
V+G P ++ R G Q+ P +TV E++ + LR P+ + R E
Sbjct: 61 GRDVTGVPPER----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVR---E 113
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
++ELV L+ L LS Q++R+ +A L PS++ +DEP S LDA+
Sbjct: 114 LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1037 VMRTVRNT-VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ ++ + G T + H D EA D + +M G
Sbjct: 169 LREELKELQRELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 4e-21
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 55/223 (24%)
Query: 862 MKLQGVSDD--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 916
++L+ VS + +LN VS G + AL+G SG+GK+TL+ +AG G I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
++ + R G Q+ P +TV E++
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--------------------- 99
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
GLS Q++R+ +A L +P ++ +DEPTS LD
Sbjct: 100 ---------------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1037 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
V +++ G TVV H D+ EA D + +++ G
Sbjct: 139 VRALLKSLQAQLGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 5e-21
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G ++ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
++ +E I + L++LGL+ AD V + +SGG+R+RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
LA L +DE ++ LD + +++ + ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSNGQIVYQGPRELVL 413
L +G+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-21
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA 931
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 932 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK---PLK 987
+ GY Q+ D +V E LL L+ + + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPLS 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 127 -----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
G+ V+ H + + D + L+ G
Sbjct: 176 GKAVIVITHDYEF-LAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 152 LNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
LNY +P + +L ++SG +KPG LT L+G +GKTTLL LAG+ + + ++G
Sbjct: 9 LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGE 65
Query: 212 VTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
+ NG +D+ R+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 66 ILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 7e-20
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 19/222 (8%)
Query: 863 KLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIK 919
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 920 VSGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIG 975
++ +K+ + + G+ QN + P +TV E++ LP I ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKR 120
Query: 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
EL+E+ L+ L+ S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 121 AAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1036 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 17/207 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET----F 930
L VS G L+G +G+GK+TL+ +L G +G + V G E
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 931 ARISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
+ G QN F TV + + + L E + + E +ELV L+ L
Sbjct: 78 RQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVGLEELLDR 134
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++ + G
Sbjct: 135 PP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGG 189
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+T++ H + E D + ++ G
Sbjct: 190 KTIIIVTHDLE-LVLEYADRVVVLDDG 215
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1056 HQPSIDIFEAFDELFLMKRG 1075
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 4e-19
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
L D+S IK G L++GP SGK+TLL L G L SG V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV-GP 341
+E + L+++GL+ D +SGGQ++RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI------SLLQPAPETYNLFDDI 395
+ L +DE + GLD + +++ K+ + G +I LL L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSNGQ 402
I+L +G+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 5e-19
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G++ A G + AL+G +GAGK+TL+ L G R G + + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 933 IS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEIDSETRKMFIGEVMELVELKPLK 987
G Q+ + + V + + + L L + E R + E + V L+
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA-EVERR---VREALTAVGASGLR 121
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1048 GRTVVCTIH 1056
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 62/256 (24%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+ D+S + G + LLG +GKTT L L G+L + SG NG+++ +
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTD 69
Query: 226 RTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS--------------------- 108
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
E + L+VLGL A+ +SGG +++++ ++G
Sbjct: 109 -------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNLFDDII 396
L +DE ++GLD ++ I + + G ++I S+ E L D I
Sbjct: 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEALCDRIA 203
Query: 397 LLSNGQIVYQG-PREL 411
++S+G++ G P+EL
Sbjct: 204 IMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 6e-19
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK-- 925
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I+V+G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 926 -KQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
E + + + QN P++ T+ E++L + P+ E I ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQA 434
Query: 982 ELKPLKQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGN-IKVSGYPKKQETFA 931
L VS + PG AL+G SGAGK+TL+ L G T G + + ++ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 932 RI-SGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEIDSETRKMFIGEVMELV 981
R G Q ++V E++L + + L P+ + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ------------R 124
Query: 982 ELKPLKQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L L++ VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 125 ALAALER--VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQPSI 1060
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP--K 925
++GV+ R G + +G +GAGKTT + +L R T G V+GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR----VAGYDVVR 59
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
+ R G Q +T E+L L P+ ++E R E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1046 DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1075
+ G T++ T H + EA D + ++ G
Sbjct: 172 EEGVTILLTTH----YMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 8e-18
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKVSGYPKKQE 928
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 929 TFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
R G Q + + TV+E++ + LR E ++ E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 984 KPLKQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-L--EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1039 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 8e-18
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 32/215 (14%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKVSGYPKKQ---E 928
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEIDSET--RKMFIGEVMELV 981
+ R GY Q+ L+S +R PE E + E +
Sbjct: 544 SLRRQVGYVLQDP-----------FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 982 ELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
E P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++
Sbjct: 593 ENLPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + GRTV+ H+ S + D + ++ +G
Sbjct: 652 LL-QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ- 927
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + ++G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 928 ------ETFARISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEIDSETRK 971
TF Q F +TV E+++ L + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1032 RAAAIVMRTVRNTVDTGRTVV 1052
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 47/246 (19%)
Query: 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 904
+ F V +S + ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 905 LAGRKTGGYI--TGNIKVSGYPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAW 958
LAG Y +G++ + G +Q + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGL----YKPTSGSVLLDGTDIRQLDPADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA- 102
Query: 959 LRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP---------GVSGLSTEQRKRLTI 1009
P D E ++ EL + + P GLS QR+ + +
Sbjct: 103 ----PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151
Query: 1010 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069
A L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D +
Sbjct: 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRI 208
Query: 1070 FLMKRG 1075
+M G
Sbjct: 209 IVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 33/252 (13%)
Query: 858 MPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 912
++++ VS D + + +S + G L+G SG GKTTL+ ++AG + + G
Sbjct: 2 PKPALEIRNVSKSFGDFTAV-DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 913 YIT-GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
I ++ P R G Q+ P +TV E++ + L++ ++ K
Sbjct: 61 EILLDGEDITDVP----PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIK 114
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+ E +ELV L+ LS Q++R+ +A LV P ++ +DEP S LDA
Sbjct: 115 ARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 1032 RAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GYEIY 1080
+ + + ++ + G T V H D EA D + +M G EIY
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225
Query: 1081 VGPLGRHSCHLV 1092
P R +
Sbjct: 226 ERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
I E + P +T E+L A L + I EV+++V LK + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1053 CTIHQ 1057
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-17
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 853 VYSVDMPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-- 907
+ P ++L+ +S +L+GVS PG A++G SG+GK+TL+ LAG
Sbjct: 327 AVGLGKPT-LELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385
Query: 908 -RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEID 966
G + VS Q+ R C Q D H TV E+L + P+
Sbjct: 386 DPLQGEVTLDGVPVSSLD--QDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDAT 437
Query: 967 SETRKMFIGEVMELVELKPLKQSLV-GL-----PGVSGLSTEQRKRLTIAVELVANPSII 1020
E + +E V L ++L GL G + LS +R+RL +A L+A+ I+
Sbjct: 438 DEE----LWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 493
Query: 1021 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
+DEPT LDA A ++ + +GRTVV H
Sbjct: 494 LLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 4e-17
Identities = 74/280 (26%), Positives = 115/280 (41%), Gaps = 42/280 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L V+ G L+G SG GK+TL+ ++AG T G I V+ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R QN P +TVYE++ + L+L +E K + EV +L+ L+ L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRKP 131
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1049
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1050 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------YEIYVGPLGRHSCHL-VSYFEAI 1098
T + H D EA D + +M G E+Y +L V+ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 1099 PGVEKIKDGYNPATWMLEVSAPS----QEVALGVDFSDIY 1134
P + +K L + ++V LG+ I
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGIRPEHIS 276
|
Length = 338 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNIKVSGYPKKQE---T 929
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I V+G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
AR+ +Q + ++V ++L Y A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-IKVSGYPKKQETFA 931
L+G++ + G L+G SGAGK+TL+ ++ + T G I N VS + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R G Q+ P VYE++ E+ + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1051 VVCTIHQPSI 1060
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 14/209 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N +V R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEIDSETRKMFIGEVMELVELKPLKQSL 990
G+ Q+ P +TV +++ + +R P E + R + E++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADR- 133
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1049
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 134 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078
T V H + E D + ++ +G E
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP--KKQETF 930
+ GVS R G + L+G +GAGKTT + +L + T G T V+G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT----VAGHDVVREPREV 71
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R G Q+ +T +E+L A L P R+ I E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVP---GAERRERIDELLDFVGLLEAADRL 128
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1049
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1050 TVVCTIHQPSIDIFEA---FDELFLMKRG 1075
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETF 930
++GVS +PG +T L+G +GAGKTT + +LAG G+ T V G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPA 74
Query: 931 A--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R G+ + +T E+L Y A L + + + E+ + + ++ L
Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLD 131
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G
Sbjct: 132 RRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186
Query: 1049 RTVVCTIH 1056
+ ++ + H
Sbjct: 187 KCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 1e-16
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 64/224 (28%)
Query: 862 MKLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 915
++ + VS +L VS +PG A++G SG+GK+TL+ +L T G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 916 -GNIKVSGYPKKQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRK 971
+ + E+ + Y Q+ PF+ T+ E++L
Sbjct: 61 IDGVDLRDLD--LESLRKNIAYVPQD----PFLFSGTIRENIL----------------- 97
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
SG QR+R+ IA L+ +P I+ +DE TS LD
Sbjct: 98 -------------------------SGG---QRQRIAIARALLRDPPILILDEATSALDP 129
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
A+++ +R + G+TV+ H+ S D + ++ G
Sbjct: 130 ETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-16
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 34/231 (14%)
Query: 839 VLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
V SL F V + + L VS PG AL+G SGAGK
Sbjct: 314 VTAAPAPSLEFSGVSVA------------YPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 899 TTLMDVLAGRKTGGYITGNIKVSGYPK---KQETFARISGYCEQNDIHSPFVTVYESLLY 955
+TL+++L G G+I V+G P +++ + Q+ PF+ ++
Sbjct: 362 STLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQH----PFL-FAGTIAE 414
Query: 956 SAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL-VGL-----PGVSGLSTEQRKRLTI 1009
+ L P D+E R E +E L +L GL G +GLS Q +RL +
Sbjct: 415 NIRLARPDASDAEIR-----EALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 1010 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
A + + ++ +DEPT+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSG 922
S ++++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G
Sbjct: 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG 67
Query: 923 YPKKQETFARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEIDSETRKMFIGE 976
++ AR EQ+ + +TV + + S W P + +
Sbjct: 68 LSRRAR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA---- 121
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ EL L +S LS +R+R+ +A L P ++ +DEPT+ LD RA
Sbjct: 122 -LARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175
Query: 1037 VMRTVRNTVDTGRTVVCTIH 1056
+ VR TG TVV +H
Sbjct: 176 TLALVRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 33/206 (16%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--------GNIKVSGYPKKQETFARI 933
+T + G SGAGK+TL+ +AG + GG I K++ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL 993
G Q P + V E+L + L + + E ++ + E+++L+ L L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR---- 127
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1053 CTIHQPSIDIFEAF---DELFLMKRG 1075
H S EA D + +M+ G
Sbjct: 187 FVTHDLS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 35/203 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIKVSGYPKKQET 929
L ++ PG A++G SGAGK+TL+ + + G I +I K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 930 FARISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEIDSETRKMFIGEVMEL 980
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-------RALSA 129
Query: 981 VELKPLKQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+E VGL LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 1036 IVMRTVRN-TVDTGRTVVCTIHQ 1057
VM ++ + G TV+ +HQ
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 72/249 (28%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 862 MKLQGVS------DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 913
++++ VS + L +S + G AL+G SG GK+TL+ ++AG R T G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG- 59
Query: 914 ITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
+ V G P R GY Q D P++TV +++ L L +E R+
Sbjct: 60 ---EVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARE-- 110
Query: 974 IGEVMELVELKPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
EL+EL VGL G LS R+R+ +A L +P ++ +DEP S
Sbjct: 111 --RAEELLEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161
Query: 1029 LDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087
LDA + + + +TG+TV+ H DI EA +FL R + V L
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTH----DIDEA---VFLADR----VVV--LSAR 208
Query: 1088 SCHLVSYFE 1096
+V+ E
Sbjct: 209 PGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L S SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
+ EA L+ +G+ D + D I +SGGQ++RV +
Sbjct: 119 -------KVDEA-------LERVGM---ED--LRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL-LQPAPETYNLFDDIILLSNGQ 402
L +DE TG+D + +I + K+ +++ L FD +I L N
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA---YFDRVICL-NRH 215
Query: 403 IVYQGPRELVLE 414
++ GP E VL
Sbjct: 216 LIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 9e-16
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 18/181 (9%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGY 923
V L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 8 VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK 67
Query: 924 PKKQETFARIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEIDSETRKMFIGEV 977
+ G Q +PF ++Y+++ Y L E + E
Sbjct: 68 DIYDLDVDVLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEA 123
Query: 978 MELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ L +K L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 124 LRKAALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 1037 V 1037
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 48/263 (18%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTYNGHN 218
LKDVS I+ G LL+GP SGK+TLL L G L + + V G T + +
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 219 MDEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ E + + Q+ D+ + TV + +AF G+ RE+
Sbjct: 74 LLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE------ 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGE 336
++ E L+++GL+ D +SGGQ++RV G
Sbjct: 115 -------IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGV 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
+ +GP + L +DE + GLD +++ K+ + G +I + D ++
Sbjct: 153 LAMGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVV 210
Query: 397 LLSNGQIVYQGPRELVLEFFESM 419
+L +G+I+ G + E +
Sbjct: 211 VLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETFA 931
L V+ G + A++G SGAGK+TL+ L G T G I N ++ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 932 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEIDSETRKMFIGEVMELV 981
R G Q P ++V E++L Y++ R L + E + + + +E V
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQAL-DALERV 135
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
+ L ++ S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 136 GI--LDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1042 R--NTVDTGRTVVCTIHQPSIDI-FEAFDELFLMKRG 1075
+ N D G TV+ +HQ +D+ + D + +K G
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAG 224
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 68/329 (20%), Positives = 112/329 (34%), Gaps = 86/329 (26%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
L D+S IK G L LLGP +GK+TLL +AG +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
L + + D +SGGQR+RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ---NIHINCGTAVISLLQPAPETY 389
+ ALA L +DE LD ++ ++ +H G + + E
Sbjct: 148 -LARALAVEPKVLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202
Query: 390 NLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT--SKKDQKQYWV 447
L D +++L+ G+I GP + V + P + VA FL EV +
Sbjct: 203 ELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEVNVLPGEVILGQLQ 254
Query: 448 HKERPYRFVTVQEFTEGFQSFHVGQKISD 476
+ + + D
Sbjct: 255 VGAHDIG---LPLQPLPDGKADLYVRPHD 280
|
Length = 345 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNIKVSGYPKKQ 927
V+L+GV G + A++G SG+GK+TL+ ++ G R G I +I +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 928 ETFARISGYCEQNDIHSPFVTVYES--LLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
E R+ G Q +TV+E+ +LP + ELV +K
Sbjct: 82 EIRKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPES-----------LIRELVLMK- 128
Query: 986 LKQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
L+ LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++
Sbjct: 129 LE--LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE 186
Query: 1040 TVRNTVDT-GRTVVCTIHQ 1057
+R D G TV+ H
Sbjct: 187 LIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETF 930
VL +G+S G L G +G+GKTTL+ ++AG G I + P E
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
+ +N + P +TV E+L + A E+D I +E V L PL
Sbjct: 76 HYLG---HRNAMK-PALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1051 VVCTIHQPSIDIFEA 1065
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ- 927
L +N VS RPG + L+G +GAGKTTL +++ G + + G + ++G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 928 ------ETFARISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEIDSETRKMF 973
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 974 I-GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1033 AAAIVMRTVRNTVDT-GRTVV 1052
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKVSGYPKKQE 928
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 929 TFARIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
F R GY QN F TV E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 983 L-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L LKQ + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1042 RNTVDTGRTVVCTIHQPSI 1060
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 61/221 (27%)
Query: 864 LQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGN 917
++ VS + +L VS + PG A++G SG+GK+TL ++ G R T G +
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV--- 59
Query: 918 IKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEV 977
R+ G DI D +G +
Sbjct: 60 --------------RLDGA----DISQ--------------------WDPNELGDHVGYL 81
Query: 978 MELVELKPLKQSLVGLPG-VSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ EL G ++ LS QR+RL +A L NP I+ +DEP S LD
Sbjct: 82 PQDDEL---------FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + + G T + H+P + D + +++ G
Sbjct: 133 RALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 863 KLQGVS--DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI 918
+++GVS + +L ++ + G A++G SG GK+TL+ ++AG + T G +
Sbjct: 5 EIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS----GEV 60
Query: 919 KVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
+ G P GY Q D P++TV +++ L E+ +++
Sbjct: 61 LLDGRPVTGPGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAK 112
Query: 979 ELVELKPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
EL+E LVGL G LS R+R+ IA L P ++ +DEP LDA
Sbjct: 113 ELLE-------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1034 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ + +T +TV+ H D+ EA D + ++
Sbjct: 166 REELQDELLRLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP-KKQETFAR-- 932
VS G +T L+G +GAGKTTL+ ++A G +T + G + +F R
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT----IDGVDTVRDPSFVRRK 76
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
I + +++ +T E+L Y A L + + R I E+ + ++L VG
Sbjct: 77 IGVLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG 132
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+
Sbjct: 133 -----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVI 187
Query: 1053 CTIH 1056
+ H
Sbjct: 188 FSSH 191
|
Length = 245 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-15
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE 928
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I + G P
Sbjct: 18 GDKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSR 74
Query: 929 T-FARIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
AR G Q D P TV E+LL + + L + R + V L+E
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAK 127
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
L+ V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 128 LENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185
Query: 1046 DTGRTVVCTIH 1056
G+T++ T H
Sbjct: 186 ARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-15
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 156 HILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
+ + LK VS I+ G ++GP SGK+T LL + G LD SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGLDRP--TSGEVRVD 64
Query: 216 GHNMDEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268
G ++ + + AA ++ Q N + ++T E + GV + R
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ER 117
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328
RE+A + L+ +GL + E+ SGGQ
Sbjct: 118 RERAEEL---------------------------LERVGLGDRLNHYPS-EL----SGGQ 145
Query: 329 RKRVTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINCGTAVISLLQPAP 386
++RV + P + + DE TG LDS T +++ ++ ++ GT ++ ++ P
Sbjct: 146 QQRVAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDP 201
Query: 387 ETYNLFDDIILLSNGQI 403
E D II L +G+I
Sbjct: 202 ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 7e-15
Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 23/242 (9%)
Query: 825 LTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQM---KLQGVSD---DKLVLLNGV 878
LT A +R + P E E S+ L GVS DK V+ NG+
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP-KKQETFARIS-GY 936
S G L+G +GAGK+T+ ++ G + G I V G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 937 CEQNDIHSPFVTVYESLL-YSAWLRLPPEIDSETRKMFIGEVM-ELVELKPLKQSLVGLP 994
Q D TV E+LL + + + TR+ I V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1055 IH 1056
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 71/276 (25%), Positives = 113/276 (40%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
+LKDV+ I+ G +LLGP GK+TLL +AG + + SG + +G ++ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+R A + Q H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMM 338
K+LGL+ + +SGGQR+RV +
Sbjct: 118 ------------------------AKLLGLEHLLNRK-----PLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398
V +DE + LD+ + + K +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIK-KLHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
++G+I G P EL ++ P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETF 930
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 931 ARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEIDSETRK--MFIGEVMELVELKPLK 987
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1041
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 932 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
R Q+ S P +TV + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNIKVSGYPKKQETF 930
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEIDSETRKMFIGEVMELVELKPLKQS 989
RI GY + P + V + L+Y A L+ L E E R+ I E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1050 TVVCTIHQPSIDIFEAF-DELFLMKRG 1075
TV+ + HQ +++ E D + L+ +G
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 59/274 (21%), Positives = 99/274 (36%), Gaps = 76/274 (27%)
Query: 156 HILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
P+ + L DVS IK G L+G SGK+TL A+ G L SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFD 65
Query: 216 GHNMDEFVPE------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGTRYEMLT 264
G ++ + + + Q D N MT+ E +A R G ++ E
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR- 121
Query: 265 ELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324
+ A G+ + V + +
Sbjct: 122 KEAVLLLLVGVGLPEE-----------------------------------VLNRYPHEL 146
Query: 325 SGGQRKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI 379
SGGQR+RV + ALA L DE ++ LD S QI++ K+ + G ++
Sbjct: 147 SGGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLL 200
Query: 380 ------SLLQPAPETYNLFDDIILLSNGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 201 FITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 71/257 (27%), Positives = 100/257 (38%), Gaps = 62/257 (24%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L SG+VT +G + T
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD--------T 66
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
S IG +T RE L + AR L L+R+E A I
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
A + K L L D VG S G +++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
+V L +DE ++GLD T + + KQ N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSNGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGY 923
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 9 SCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPI 66
Query: 924 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
+E++ + Y +T E+L + W R ++ T I E + V L
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGL 120
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
L+ LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 121 AGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
Query: 1044 TVDTGRTVVCTIHQP 1058
G V+ T HQP
Sbjct: 176 HAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R G+ Q+ +TV++++ + LR+ P + +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 992 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
L + + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1047 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078
T V H + E D + +M +G E
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKGRIE 216
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 9e-14
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNIKVSGYPKKQETF 930
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 931 ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP--L 986
+ Q+ + S P +T+ E + + E RK + ++ V L L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G++ + G +TA++G +GAGK+TL L G + + G I + K Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 933 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
S G Q+ + F +VY+ + + A L+LP + E RK + ++ ++ LK
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1049 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L D+S ++PG LLGP GKTTLL +AG SG + +G ++ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV-GPAL 343
L+++GL+ + + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L +DE + LD+ ++ K+ + G I + E L D I +++ G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 70/261 (26%)
Query: 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 219
+ + LKDV+ I+ G ++GP SGK+T LL L G LD SG V NG ++
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDK--PTSGEVLINGKDL 69
Query: 220 DEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ + A ++ Q+ N + ++TV E + G RR++A
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG--------RRKRA 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
A + L+VLGL+ E+ SGGQ++RV
Sbjct: 122 A--------------------------EELLEVLGLEDRLLKKKPSEL----SGGQQQRV 151
Query: 333 TTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCFKQNIHINCGTAVI----SLL 382
+ AL + DE TG LDS T +++ ++ ++ G +I
Sbjct: 152 -----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD-- 202
Query: 383 QPAPETYNLFDDIILLSNGQI 403
PE D +I L +G+I
Sbjct: 203 ---PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
+NGVS + + G + L+G +GAGKTT ++ G + G I ++ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 932 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R+ GY Q S F +TV E++L A L + + R+ + E++E + L++
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEELLEEFHITHLRK 128
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1049 RTVVCTIH 1056
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFV 223
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G ++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPD 278
R I Q N I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-M 337
P + K A L+ +GL A D++ SGGQ++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCG-TAVISLLQPAPETYNL----F 392
M P L L DE LD +++ Q+++ K+ I+ G T ++SL Q +L
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSNGQIVYQGPRE 410
D I+ L +G+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 861 QMKLQGVS-------DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 911
++L+ VS + L+ VS G + ++G SGAGK+TL+ ++ R T
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 912 GYIT-GNIKVSGYPKKQ-ETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEIDS 967
G + ++ + + + G Q N + S TV+E++ + P E+
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAG 112
Query: 968 ETRKMFIGEVMELVELKPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFM 1022
+ V EL+EL VGL + LS Q++R+ IA L NP I+
Sbjct: 113 VPKAEIKQRVAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165
Query: 1023 DEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
DE TS LD +I+ + G T+V H+ +++ + D + ++ +G
Sbjct: 166 DEATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSG---YPKKQET 929
L G+S G + +G +GAGKTT + +L+G + T G ++V+G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 930 FARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LK 987
RI Q + V +S L +A LPP + E+ EL++L+ L
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLD----ELSELLDLEELLD 148
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1046
V LS QR R IA L+ P I+F+DEPT GLD A + ++ +
Sbjct: 149 TP------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 1047 TGRTVVCTIH 1056
G TV+ T H
Sbjct: 203 RGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETFA 931
L GVS G + AL+G +GAGKTTL+ + G G I + + ++G P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHE 71
Query: 932 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLK 987
R GY + P +TV E+LL A+ R + + + V EL LK +
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERR 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1048 GRTVV 1052
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 31/260 (11%)
Query: 862 MKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 918
++++GV+ DK + + +S PG + L+G +GAGKTT ++ G G I
Sbjct: 3 LEIEGVTKSFGDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEI 59
Query: 919 KVSGYPKKQETFARISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEV 977
+G P QE RI GY E+ ++ P +TV + L Y A L+ P+ + + + +
Sbjct: 60 TWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAW 114
Query: 978 MELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+E +E+ K + LS ++++ ++ P ++ +DEP SGLD ++
Sbjct: 115 LERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL-------GR---- 1086
+ + G T++ + H+ + E D L ++K+G +Y G + G+
Sbjct: 170 KDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLV 227
Query: 1087 -HSCHLVSYFEAIPGVEKIK 1105
S + IPG+ KI
Sbjct: 228 IESDLSLEELANIPGILKIT 247
|
Length = 300 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 4e-13
Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 69/275 (25%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHNMDEFVP- 224
ILK V+ +K G + ++GP SGK+TL + G +V G + ++G ++ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
ER A I LAF GV A + P+
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFI 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR-----GISGGQRKRVTTGEM 337
+K A ++LGLD +E + G SGG++KR ++
Sbjct: 121 KELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINCGTAVISLLQPAPETYNLFD 393
++ P LA+ +DE +GLD + +N ++ G +I+ Q L D
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ------RLLD 208
Query: 394 DII-----LLSNGQIVYQGPRELVLEFFESMGFKC 423
I +L +G+IV G EL E E G+
Sbjct: 209 YIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 5e-13
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 62/203 (30%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I V G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1053 CTIHQPSIDIFEAFDELFLMKRG 1075
H+ ++FE D + +++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 23/186 (12%)
Query: 858 MPQQMKLQG--VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG- 912
P + L G VS LN +S + PG L L+G +GAGKTTLMDV+ G R G
Sbjct: 2 NPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61
Query: 913 -YITGNIKVSGYPKKQETFARISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPP 963
G+ ++ P+ + AR G + + F +TV E+L S + L
Sbjct: 62 VLFDGDTDLTKLPEHR--IARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA 118
Query: 964 EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ +E R+ I E++ + L + L L LS Q++ L I + L +P ++ +D
Sbjct: 119 RLRAEERRR-IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLD 172
Query: 1024 EPTSGL 1029
EP +G+
Sbjct: 173 EPVAGM 178
|
Length = 249 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-13
Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L D++ IK G+LT L+G +GK+TLL L G L + G + NG ++ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ +++SQ+ ++ T+RE + + + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
GL DTV+G+ G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNI-HINCGTAVISLLQPAPETYNLFDDIILLSNG 401
L +DE + LD+ T QI+ Q + + V+ ++ E D I++L NG
Sbjct: 476 SLLLLDEPTAHLDAETE-QII---LQALQELAKQKTVL-VITHRLEDAADADRIVVLDNG 530
Query: 402 QIVYQG-PREL 411
++V QG EL
Sbjct: 531 RLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 8e-13
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 18/204 (8%)
Query: 859 PQQMKLQGVSD---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 915
+ L GVS DK V++N +S G L+G +GAGK+T+ +L G +
Sbjct: 2 NVAIDLVGVSKSYGDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--R 58
Query: 916 GNIKVSGYPK-KQETFARIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEIDSETRKM 972
G I V G P + AR++ G Q D P TV E+LL + + + + +
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEA 114
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
I ++E L +S + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD
Sbjct: 115 VIPSLLEFARL----ESKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 169
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIH 1056
A ++ +R+ + G+T++ T H
Sbjct: 170 ARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 58/263 (22%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
ILK V+ +K G + ++GP SGK+TL +AG S SG + + G ++ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 227 TAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +++ Q+ I ++ E L + ARR + + +D
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPLD 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR-----GISGGQRKRVTTGEM 337
+ + L +LG+D +E + G SGG++KR +M
Sbjct: 116 --LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
+ P LA+ +DEI +GLD + + + +I+ Q L + I
Sbjct: 159 ALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ------RLLNYIK 211
Query: 397 -----LLSNGQIVYQGPRELVLE 414
+L +G+IV G EL E
Sbjct: 212 PDYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-12
Identities = 56/200 (28%), Positives = 84/200 (42%), Gaps = 41/200 (20%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LD G VT +G ++D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + +Q D H+ + TVRE L + T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR--- 455
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
L DTV+G E +SGG+R+R+ ++ A
Sbjct: 456 -----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIV 363
L +DE + LD+ T +++
Sbjct: 492 ILLLDEPTEHLDAETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 51/257 (19%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L SG VT NG ++ + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMM------V 339
+A+A + GL R +SGG+++RV ++ V
Sbjct: 118 QALAATD------------LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
LF+DE ++ LD + T ++ + G AV+++L D I+
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-----GGAVLAVLHDLNLAAQYADRIV 212
Query: 397 LLSNGQIVYQGPRELVL 413
LL G+++ G + VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 1e-12
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKVSGYPKKQ--- 927
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G ++++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 928 ETFARISGYCEQNDIHS----PFVTVYE--SLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
AR Q HS PF TV E ++ + E D+ + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDALVA-----AALAQV 122
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1035
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1036 IVMRTVRN-TVDTGRTVVCTIH 1056
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L ++ + +PG A++G +GAGKTTL+++L G I I + +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 932 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
+ G Q F+ T+ E++ P E EV+E +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLGR-----PNATDE-------EVIEAAKEAGAHD 120
Query: 989 SLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 1040 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + GRT + H+ S I A D++ ++ G
Sbjct: 181 ALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI- 379
+RG+S QRKR+T G + LF+DE ++GLDS + IV F + + + G A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKL-ADSGQAILC 163
Query: 380 SLLQPAPETYNLFDDIILL-SNGQIVYQG 407
++ QP+ + FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-12
Identities = 57/263 (21%), Positives = 91/263 (34%), Gaps = 67/263 (25%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
IL VS + G + LLG +GKTTLL + G L SG + ++G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR-----YEMLTELARREKAA 273
A Y+ + E+TV E L AR + YE+ L R K
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT 333
G +SGG+++ +
Sbjct: 130 A-----------------GT------------------------------LSGGEQQMLA 142
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINC-GTAVISLLQPAPETYNL 391
+M P L L +DE S GL +I ++ + G ++ + Q A +
Sbjct: 143 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALEI 198
Query: 392 FDDIILLSNGQIVYQGPRELVLE 414
D +L G++V +G +L
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 53/260 (20%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
L DV+ + G L LLGP SGK+TLL +AG L+ SGR+ NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQR+RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI- 403
L +DE LD+ ++ + ++ +H + + E + D I+++SNG+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRK-LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210
Query: 404 -------VYQGP-RELVLEF 415
VY P V+ F
Sbjct: 211 QIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSG--YPKKQET 929
LN VS G ++G SG+GK+TL +LAG + + +G+I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 930 --FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
F R Q+ S P TV L P + ++ I E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQR--IAELLDQVGLPP 132
Query: 986 --LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYP--- 924
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + V G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME----- 979
R G Q E++L++ +R I M + V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 980 -----LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQPS 1059
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGYPKKQETFARIS 934
VS G + L+G +GAGKTT ++ G R G I + +S P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994
GY Q ++VY++L+ A L++ ++ +E R+ E+ME ++ L+ S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1055 IH--QPSIDIFE 1064
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 862 MKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 918
+ ++ VS K+VL + VS G +T+++G +GAGK+TL+ + R +G I
Sbjct: 2 ITIENVSKSYGTKVVL-DDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEI 58
Query: 919 KVSGYP----KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP---PEIDSETRK 971
+ G +E ++S ++N I+S TV + + + R P + E R+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRR 114
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+ I E +E + L+ L + LS QR+R IA+ L + + +DEP + LD
Sbjct: 115 I-INEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 1032 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA---FDELFLMKRG 1075
+ + +M+ +R D G+T+V +H DI A D + +K G
Sbjct: 169 KHSVQIMKILRRLADELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 65/260 (25%), Positives = 101/260 (38%), Gaps = 61/260 (23%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHN---MDE 221
LKD+S I G +T L+GP GK+TLL L L G V +G + +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-MM 338
L+ L D V G+SGGQ++R+ +
Sbjct: 124 -----------------------LRKAALW---DEVKDRLHALGLSGGQQQRLCLARALA 157
Query: 339 VGPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINCGTAVI---SLLQPAPETYNLF 392
P + L +DE ++ LD +T +I + K+ T VI ++ Q A +
Sbjct: 158 NEPEV-LLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAA----RVA 207
Query: 393 DDIILLSNGQIVYQGPRELV 412
D L NG++V GP E +
Sbjct: 208 DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP 924
S + +L G+S G + G +G GKTTL+ +LAG R G + N
Sbjct: 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--A 65
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
++++ R Y P ++ E+L + W + I + + V L
Sbjct: 66 EQRDEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLT 118
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ LS Q++RL +A ++ + +DEPT+ LD A++ +R
Sbjct: 119 GFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
Query: 1045 VDTGRTVVCTIHQP 1058
+ G V+ T HQ
Sbjct: 174 LARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
LKD++ + G L ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R EK IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE----ERYEKV--IKACALEPD 109
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI--SGGQRKRVTTGEMM 338
+++ TE +G+ +GI SGGQ++R+
Sbjct: 110 LEILPDGDLTE------------------------IGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCFKQNIHINCGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC + +N T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYNLFDDIILLSNGQ 402
A D I++L NG+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETFARISGYCEQNDIHSP 945
++G +G+GK+ L++ +AG + G I N K ++ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM---ELVELKPLKQSLVGLPGVSGLSTE 1002
+TVY+++ Y R + + E + + I E++ L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1062
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1063 FEAFDELFLMKRG 1075
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG-----YPKKQET 929
L+ VS R G L G SGAGKTTL+ +L G T G ++++G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 930 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R G Q+ P TVYE++ +R E + + R +G + V L+
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKAD 132
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+ P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 133 AF---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1049 RTVVCTIHQPSI 1060
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 3e-12
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 23/203 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS------GY 936
RPG L+GV+GAGKTT +L G T +G+ V+G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996
C Q D +T E L A LR P + E + ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANW--------SIQSLGLSLYADRLA 2068
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1057 QPSIDIFEAF-DELFLMKRGGYE 1078
S++ EA L +M +G ++
Sbjct: 2129 --SMEECEALCTRLAIMVKGAFQ 2149
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 4e-12
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+GVS RPG + AL+G +GAGK+TLM +L+G G I + G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL----IDGKP------VA 73
Query: 933 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEIDSETRKMFI--GEVME 979
S + +H P ++V E++ ID + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 980 LVEL-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ L V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 14/227 (6%)
Query: 861 QMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNI 918
++K V + +L +S PG A++G +GAGKTTL+ +L G + G +T
Sbjct: 33 ELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG 92
Query: 919 KVSGYPKKQETFARISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEIDSETRKMFI 974
+ G + + G E ++ TV + +L + A + + E +
Sbjct: 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAA 152
Query: 975 GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
++EL+ K L G LS +++R+ IA LV +P ++ +DEP GLD A
Sbjct: 153 QWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 1035 AIVMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
++ + ++ H +I F L+K G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253
|
Length = 257 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 5e-12
Identities = 64/279 (22%), Positives = 100/279 (35%), Gaps = 81/279 (29%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL V + G + +LG SGK+TLL + G L G + +G ++ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ Q +TV E +AF L E + P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
I V MK L+++GL D +SGG RKRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINC--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I + +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYNLFDDIILLSNGQIVYQGPRE--------LVLEFFE 417
+ D + +L++G+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 63/216 (29%), Positives = 89/216 (41%), Gaps = 54/216 (25%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYNG 216
RKQ +L D++ I PG + +L GP SGKTT LL L G L S SLKV G+ Y
Sbjct: 17 RKQ---VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGA 72
Query: 217 HNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ R YI Q N +G +T R Q V E+ L+ +E
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE--- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM---IRGISGGQRKRVT 333
+A A L+ +GL GD + +SGGQ++RV
Sbjct: 121 ---------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVA 151
Query: 334 TGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQ 368
+V P L + DE + LDS + +V ++
Sbjct: 152 IARALVHRPKL-VLADEPTAALDSKSGRDVVELMQK 186
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 49/253 (19%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
LK+++ I PG ++GP +GK+TLL + ++ S SG + G ++ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R I QH N I +TV E + R T +L + +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-MM 338
+A+ L+ +GL A D++ SGGQ++RV +
Sbjct: 124 -----ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCG-TAVISL--LQPAPETYNLFDDI 395
P L L DE LD T+ Q+++ K I+ G T +I+L + A + D I
Sbjct: 162 QQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQVDLAKK---YADRI 216
Query: 396 ILLSNGQIVYQGP 408
+ L G+IV+ G
Sbjct: 217 VGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKV-----SGYPKKQET 929
L ++ PG + L G SG+GKTTL+ ++ G ++ G++KV G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 930 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1047
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 7e-12
Identities = 57/219 (26%), Positives = 83/219 (37%), Gaps = 53/219 (24%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNIKVSG---- 922
+ K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPP 963
YP I G VT L +A R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 964 EIDSETRKMFIGEVMELVELKP--LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
I E K + E EL+ L L++ + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R G Q+ P TVYE++ LP + + + V E+++L LK
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1051 VVCTIH 1056
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-12
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPK 925
K +L +S + PG A++G SG+GK+TL+ +L T G I I +
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398
Query: 926 KQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
RI G Q+ + F T+ E++ EI+ + E +
Sbjct: 399 D-SLRKRI-GIVSQDPLL--FSGTIRENIALGRPDATDEEIEEALKLANA---HEFIANL 451
Query: 985 PLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P ++VG GV LS QR+RL IA L+ NP I+ +DE TS LD A++ ++
Sbjct: 452 PDGYDTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ GRT + H+ S + D + ++ G
Sbjct: 511 LLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 8e-12
Identities = 58/256 (22%), Positives = 95/256 (37%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + SGR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
P A AY+ + +TV E L L R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENL---------------LLGAYARRDKEAQERDL 116
Query: 280 DIDVYMKAIATEGQEANVITDYY--LKVLGLDVCADTVVGDEMIRG----ISGGQRKRVT 333
+ +VY + + LK E +SGG+++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
+M P L L +DE S GL +I K+ + G ++ + Q A +
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSNGQIVYQGP 408
D +L NG+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 63/255 (24%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
L DVS ++PGR LLGP +GK+TL L + G+++ GH++ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG R+RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF------DDIIL 397
L +DE + GLD ++ I ++ +S+L +L D +++
Sbjct: 154 -LLLDEPTVGLDPASRAAIT----AHVRALARDQGLSVLW----ATHLVDEIEADDRLVV 204
Query: 398 LSNGQIVYQG-PREL 411
L G+++ G EL
Sbjct: 205 LHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-12
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 20/211 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK-QETFARI 933
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I + G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 934 -SG----YCEQNDIH-SPFVTVYESLLYSAWL-RLPPEIDSETRKMFIGEVMELVELKPL 986
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
GR ++ H+ +IF D + + K G Y
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDGRY 218
|
Length = 501 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 863 KLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922
K G + +L +L GV + G A++G SG+GK+TL+ VLAG +G +++ G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 923 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSE-TRKMFI 974
P ++ A + G+ Q+ P +T E++ LP E+ E +
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRA 125
Query: 975 GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD---- 1030
G L + L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVG-LGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+ A ++ R + G T+V H P +
Sbjct: 183 DKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 9e-12
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIKVSGYPKKQETFARI 933
L+ V G + AL+G SG+GK+TL+ L+G TG G +I++ G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 934 SGYCEQNDIHSPFV----------TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
+ ++ ++ ++ +V E++L A P T + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF---WRTCFSWFTREQKQRAL 134
Query: 984 KPLKQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1039 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
T+R+ G TVV T+HQ +D + E + R G+ Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-11
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
L L DVS ++PG + L+GP +GKTTL ++G L + SG V ++G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 -ERTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
E I Q E+TV E + +A+ + T +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVN 364
+ P L L +DE + GL+ T ++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAE 184
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFA-RI 933
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I+++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL 993
G+ Q+ +TV +++ + +R P K + E++ELV+L+ L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDR---Y 127
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1052
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1053 CTIHQPSIDIFEAFDELFLMKRGGYE 1078
H + E D + +M G E
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIE 210
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKK 926
D L G++ G + AL+G +GAGK+TL G + T G + + Y KK
Sbjct: 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK 71
Query: 927 QETFARIS-GYCEQN---DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
R + G QN + +P TV E + + + +G E VE
Sbjct: 72 SLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP--------------LNLGLSKEEVE 115
Query: 983 LKPLKQSL--VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
K +K++L VG+ G LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 116 -KRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
+M+ + + G T++ + H +D+ + D++++M G
Sbjct: 175 QIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
T L D++ I G +LLGP GKTT L +AG + + SGR+ G ++ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
++ +A ++L ++ + D + +SGGQR+RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404
MDE + LD+ Q+ K + GT I + E + D I ++++GQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ--- 927
K L G+S + + G A++G SG+GK+TL ++ G +G++++ G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
ETF + GY Q D+ TV E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENI-----ARFGENADPE-------KIIEAAKLAGVH 434
Query: 988 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
++ G TVV H+PS + D++ +++ G
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+LK V ++ G + ++GP SGK+TLL + G L SG V +G ++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R + Q +TV E +AF R T L+ E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
++ I E L+ +GL D + +SGG +KRV
Sbjct: 113 -----IREIVLEK----------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390
ALA L DE + GLD + I + +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSNGQIVYQGPRELVLEFFES 418
+ D I +L +G+IV +G E E S
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
+LKDVS IKPG ++GP SGK+TLL L D + SG + +G ++ + E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 42/259 (16%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
LKDV+ I G + ++GP +GK+TLL +L G +D + SG + +NG + + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R I Q N + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLF 120
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
+ +A+ + ++ Y + A T +SGGQ++RV +V
Sbjct: 121 SKEDKAQALDAL-ERVGILDKAYQR-------AST---------LSGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399
+ DE LD + ++++ K I+ G VI L D II L
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLK 222
Query: 400 NGQIVYQGP-RELVLEFFE 417
G+IV+ GP EL E +
Sbjct: 223 AGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 17/172 (9%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP- 924
G + +L +L GV + G AL+G SG+GK+TL+ +LAG G +G + + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74
Query: 925 ------KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
+ + A+ G+ Q+ + P + E++ A LR E ++R
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRN----GAK 128
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
L VS G L ++G SG GKTTL++++AG T G+I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL 993
G QN+ P++ V +++ + LR I+ R+ +++ LV L+ + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
LS R+R+ IA L P ++ +DEP LDA
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 61/251 (24%), Positives = 92/251 (36%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGG+R+RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE + LD + + ++ G V++ L + D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 74/298 (24%), Positives = 123/298 (41%), Gaps = 64/298 (21%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL------DSSLKVSGRVTYNGHNMD 220
L D+S I G T L+G SGK+T+ + G L +S + V G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + E+ DN TV + +AF + V R EM+ I D
Sbjct: 81 D-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVL 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGEMMV 339
DV M DY D +SGGQ++RV G + V
Sbjct: 129 ADVGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399
P + + +DE ++ LD + QI+ ++ + VIS+ E N+ D +++L
Sbjct: 161 EPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLD 217
Query: 400 NGQIVYQG-PRELV--LEFFESMGFKCP---------KRKGVADFLQEVTSKKDQKQY 445
+G+++ QG P E+ +E + +G P K KG++ QE+ +++ QY
Sbjct: 218 DGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 29/163 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL-----KPLK 987
I E ++ +T E+L L P DS I EV+ +V+L K K
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTNTGKKKAK 123
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
Q +G+ ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 QFSLGM----------KQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 32/251 (12%)
Query: 833 PKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMG 892
M LP P E + + Q+ +L G+S A + G ++G
Sbjct: 321 AAAERMPLP-APQGALSVERLTAAPPGQKK----------PILKGISFALQAGEALGIIG 369
Query: 893 VSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTV 949
SG+GK+TL +L G +G++++ G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 950 YESLLYSAWLRLPPEIDSETRKMF----IGEVMELVELKPLK-QSLVGLPGVSGLSTEQR 1004
E++ R E D E K+ + V EL+ P + +G G + LS QR
Sbjct: 427 AENIA-----RFGEEADPE--KVIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQR 478
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1064
+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+PS
Sbjct: 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALA 536
Query: 1065 AFDELFLMKRG 1075
+ D++ +++ G
Sbjct: 537 SVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
+N VS G + L+G +GAGKTT ++ G R G I + ++ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 932 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEIDSET--RKMFIGEVMELVELKPL 986
R+ GY Q S F +TV ++++ +R E D + RK + ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHL 132
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1047 TGRTVVCTIH 1056
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQET 929
+V + VS + + G + AL+G +GAGK+TLM +L G + G I+V G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 930 FARISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEID-SETRKMFIG 975
RI D +H F+ TV E+++ ID + R I
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 976 EVMEL--VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
E+ E + + P + V+ LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 1034 AAIVMRTVRNTVDTGRTVV 1052
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVS 921
D +L VS G A++G SG+GK+T++ DV +G I G +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIR 66
Query: 922 GYPKKQETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
++ R G Q ND T+ ++ Y E+ + I +
Sbjct: 67 EV--TLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 119 --KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +R V GRT + H+ S I A D++ ++K G
Sbjct: 176 IQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L+DVS +KPG ++GP +GK+TLL A+ G L + SG + G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + + + D
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVL-----------------MGLYGHKGLFRRLSKAD- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
KA E L+ +GL + + D I +SGGQ++RV +V
Sbjct: 110 --KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL--LQPAPETYNLFDDIILLSNG 401
L +DE G+D T I ++ T ++ L E FD ++LL N
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGM-TILVVTHDLGLVLE---YFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 24/164 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNIKVSGYPKKQETFA 931
L+ VS + G + +G +GAGK+T M ++ G Y+ +G+++V G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 932 --RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEI---DSETRKMFIGEVMELVELKPL 986
R GY + H+P +Y + +L+ I + K + E++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKVSG-----YPKKQ 927
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
R G Q+ + P ++V ++LL++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 18/213 (8%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETF 930
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 931 ARISGYCEQNDIHSPFVTVYESLL--YSAW--LRLPPEIDSETRKMFIGEVMELVELKPL 986
+ + + F+ + LL ++A + +P I ++ K E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1043
+ + P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 884 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNIKVSGYPKKQ-ETFARISGYC 937
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997
Q P ++V +L Y P E R++ V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHLLGRLPG----- 130
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 41/212 (19%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926
VS +L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 8 VSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---- 63
Query: 927 QETFARISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
DI + E ++ A+ PPEI F+ V E
Sbjct: 64 -------------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---- 103
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
G S ++KR I L+ P + +DEP SGLD A +V +
Sbjct: 104 --------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ G++V+ H + + D + ++ G
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDG 181
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQND-IH 943
G + AL+GV+G+GK+TL L G +G I + G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 944 SPFVTVYESLL------YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997
F + E ++ + WLR + D + + + V++ + +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-11
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-ETFA 931
+L+ +S G L AL+G SG GKTTL+ +AG +TG I ++
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R QN P + V +++ + + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1049
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG 1075
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 40/217 (18%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGY-P-KKQETFARISGYCEQ 939
G + +G +GAGK+T + +L G T G + +V+G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 940 NDIHSPFVTVYESLLYSAW----------LRLPPEIDSETRKMFIGEVMELVELKP-LKQ 988
+ L W L+L EI + + + E+++L+ LK
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1047
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 P------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084
TV+ T H DI D + L+ + G ++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNIKVSGYPKKQET 929
+LN +S + G +TAL+G +G GK+TL+ A R ++G G+ +S +Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 930 FARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEIDSETRKMFIGEVMELVEL 983
AR Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRI 128
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 129 NHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 1044 TVDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1076
G+TVV +H D+ +A D L ++ G
Sbjct: 184 LNTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 5e-11
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T L D+S ++ G + LLGP +GKTTL+ + G L SG + G ++ + E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFS 250
R Y+ + + +TVRE L S
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+ +S + G +L GP SGKTTLL +AG L +G + +G ++D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQG 255
Y+ + +TV E L F A G
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGY 923
VS D LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G
Sbjct: 10 VSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL 69
Query: 924 PKKQETFARISGYCE--QNDIHSPFVTVYESLL------YSAWLRLPPEIDSETRKMFIG 975
P+ Q AR +G Q +TV+E+L S + L + +E K I
Sbjct: 70 PEHQ--IAR-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE-EKDRIE 125
Query: 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-11
Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S I PG ++G SGK+TLL L G GR+ +G ++++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A E + E A+ AG
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF----- 591
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
+ L + DT VG E +SGGQR+R+ ++
Sbjct: 592 ---------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIH-INCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE ++ LD T I QN+ I G VI ++ T D II+L G+
Sbjct: 630 ILLLDEATSALDPETEAII----LQNLLQILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA 931
+L G++ F +T L+G +G GK+TL L+G R G + K Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R Q+ F T +S + + L TR+ + E + LV+ + +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1051 VVCTIHQPSID-IFEAFDELFLMKRG 1075
V+ + H ID I+E D ++++++G
Sbjct: 189 VIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNIKVSGYP--KKQ 927
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+I + +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 928 ETFARI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
+ R G+ QN P TV E+++ P + E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 984 KPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1039 RTVRNTVDTGRTVVCTIHQPS 1059
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 68/207 (32%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNIKVSG---YPK 925
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 926 KQETF---ARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
+ +T I +Q + PF +++YE+++Y LRL D K + E +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 982 ELKPLKQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
K LK + + GLS Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 127 --KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 1035 AIVMRTVRNTVD--TGRTVVCTIHQPS 1059
+ T+ D T V ++ Q S
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-11
Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T + D+S IK G LLGP GKTTLL +AG S SG + +G ++ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R + Q H MTV E +AF + + ++ K A I
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI--- 113
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMM 338
KA E L+++GL+ D +SGGQ++RV +
Sbjct: 114 -------KARVEE----------ALELVGLE-----GFADRKPHQLSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398
V L +DE + LD+ Q+ K+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
++G+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG----H 217
K+ + + VS +KPG +T LLGP +GKTT L LAG L+ +G T +G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 218 NMDE------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
E FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLY--------DRLTARENLEYFAGLYGL--------------- 108
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKR 331
+G E + LG++ D VG G S G R++
Sbjct: 109 -------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144
Query: 332 VTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVISLLQPAPET 388
V +V L +DE +TGLD + + + + G ++ E
Sbjct: 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-----GKCILFSTHIMQEV 199
Query: 389 YNLFDDIILLSNGQIVYQG 407
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 8e-11
Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 65/269 (24%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G S SG V + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQG-----VGTRYEMLTELARREKAAGI 275
R A I+ Q +TV E +A A + +G E RE+A +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
L+ +GL AD G+ +S GQ++R+
Sbjct: 134 ---------------------------LEFVGLGELADRPAGN-----LSYGQQRRL--- 158
Query: 336 E----MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAV------ISLLQPA 385
E + P L L +DE + GL+ T ++ + + G + + L+
Sbjct: 159 EIARALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV--- 213
Query: 386 PETYNLFDDIILLSNGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 214 ---MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 9e-11
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 52/195 (26%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
+T L+D+S ++ G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV----TT 334
L+++GL + +SGG R+RV
Sbjct: 115 -----------------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A++ QH + T+ E + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAGL--------- 437
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
+ +A Q GL DT +G+ G+SGGQ +R+ + A
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 70/258 (27%), Positives = 101/258 (39%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-DEFVPER 226
L DVS I G L LLGP SGKTTLL +AG L+ SG + + G + D V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQR+RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI--- 403
+DE LD+ ++ ++ +H + + E + D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 65/277 (23%), Positives = 100/277 (36%), Gaps = 92/277 (33%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
V M E + + L + L A +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----GRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCFKQNIHINCGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 L----QPAPETYNLF-DDIILLSNGQIVYQGPRELVL 413
L A + D I+LL G++V G VL
Sbjct: 198 LHDLNLAA-----RYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-10
Identities = 69/260 (26%), Positives = 109/260 (41%), Gaps = 65/260 (25%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS I+PG ++G SGK+TLL L G + G V +G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG----IKPDPD 280
R Y+ Q D + T+R+ +A A E + A AG ++ PD
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD 589
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
GLD +G E R +SGGQR+ V ++
Sbjct: 590 --------------------------GLD----MQIG-ERGRSLSGGQRQAVALARALLR 618
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI-----SLLQPAPETYNLFDD 394
P + L +DE ++ +D+ + + + K+ + T V+ SLL L D
Sbjct: 619 DPPI-LLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLVTHRTSLLD-------LVDR 668
Query: 395 IILLSNGQIVYQGPRELVLE 414
II++ NG+IV GP++ VLE
Sbjct: 669 IIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA---RISGYCE 938
G+ TAL G SG+GKT+L++++AG R G I N +V +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 939 QNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998
Q+ P TV +L Y W + + D +++ L+ ++ L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMWKSMRAQFD---------QLVALLGIEHL---LDRYPGT-- 128
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 863 KLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GN 917
+L+ VS V L+GVS + G L+G SG GKTTL+ ++AG T G I
Sbjct: 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61
Query: 918 IKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEV 977
++ P R QN P +TV+E++ + LRL ++ K + E
Sbjct: 62 KDITNLP----PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEA 114
Query: 978 MELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
++LV+L+ S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 115 LDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 16/213 (7%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE 928
D +L +S G AL+G SG+GK+TL++++ + +G I + G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 929 TFA---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF-IGEVMELVELK 984
T A R G Q D+ TV E++ Y P E + E +
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR----PGATREEVEEAARAANAHEFIMEL 124
Query: 985 PLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P +++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 125 PEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
+ RT H+ S I A D + +++ G
Sbjct: 184 LMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 53/200 (26%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH--- 217
K+ L VS + PG + LLGP +GKTTL+ LA S SG + +G
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 218 -NMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ R Y+ Q TVRE L + A +G+
Sbjct: 65 KQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-------------------- 102
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE 336
P ++ + D L+++ L + I +SGG R+RV +
Sbjct: 103 PSKEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQ 143
Query: 337 MMVG-PALALFMDEISTGLD 355
+VG P++ L +DE + GLD
Sbjct: 144 ALVGDPSI-LIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L +S + + G L+G SG GKTTL+ ++AG R+T G I G ++ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSL 990
G Q+ P +TV +++ Y + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 991 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 863 KLQGVS------DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 916
+L+ VS K+ L VS + G + ++G SGAGK+TL+ + G + +G
Sbjct: 3 ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSG 60
Query: 917 NIKVSGY------PKKQETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEIDSE 968
++ V G K+ R G Q N + S TV+E++ P EI
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGV 112
Query: 969 TRKMFIGEVMELVELKPLKQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ V+EL+EL VGL + LS Q++R+ IA L NP ++ D
Sbjct: 113 PKAEIEERVLELLEL-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD 165
Query: 1024 EPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1057
E TS LD ++ +R+ + G T+V H+
Sbjct: 166 EATSALDPETTQSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKVSGY-------PKKQE 928
VS PG + ++G SG+GKTTL+ ++GR G +T ++ ++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 929 TFARIS-GYCEQNDIH------SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
R G+ QN S + E L+ + R I +E + +E V
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEA-----QDWLEEV 138
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
E+ + + LP S ++RL IA LV P ++FMDEPT GLD A ++ +
Sbjct: 139 EIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 1042 RNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
R V + G VV H ++ A D L +MK+G
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 48/236 (20%)
Query: 177 PGRLTLLLGPPASGKTTLLLALAG--KLDS-SLKVSGRVTYNGH-NMDEFVPERTAAYIS 232
+T + G +GK+TLL +AG K D ++ ++G V ++ ++ +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG-PALALFMDEIS 351
L +LGLD + + +SGG+++RV + P L L +DE
Sbjct: 116 ----------LDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPF 159
Query: 352 TGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
+ LD + Q++ KQ I N VI + E L D I+++ +G++ Y G
Sbjct: 160 SALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + SG++ NG ++ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK---------------VL 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
IA ++LG+D + + +SGG+++RV +V L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQ 406
+DE + LD T ++ K+ I G V+ + E + L D + ++ NG+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 23/179 (12%)
Query: 862 MKLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIT 915
++L+ V+ + L+ ++ G L+G SG GKTT + ++AG T G YI
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 916 GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEIDSETRKMF 973
G V+ P K A + QN P +TVY+++ + LR EID R
Sbjct: 61 GR-DVTDLPPKDRDIAMVF----QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVR--- 112
Query: 974 IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
EV EL++++ L LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 113 --EVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 899 TTLMDVLAG--RKTGGYITGN-IKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY 955
+TL+ ++ G + T G I + +G ++ RI G Q+ P +TV E+L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRI-GVVFQDPQLFPELTVRENLFF 59
Query: 956 SAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
+ E +E V L V LS Q++R+ IA L+
Sbjct: 60 GL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALLK 107
Query: 1016 NPSIIFMDEPTS 1027
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 62/224 (27%), Positives = 90/224 (40%), Gaps = 49/224 (21%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKVSGYPKKQET- 929
+N ++ G L+G SG+GKTT M + I G I + G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 930 --FARISGYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
R GY Q P +TV E LL W + E + E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 982 ELKPLKQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
L P P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 1041 ------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
R + G+T+V H DI EAF D + +MK G
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L V+ PG + AL+G +GAGK+TLM VL+G T G IT I Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT--INNINYNKLDHKLAA 78
Query: 933 ISG----YCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
G Y E + I +TV E+L R T+K+ +++ E++
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 989 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1037
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSS 223
|
Length = 510 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 44/220 (20%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA 931
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 932 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPE-----------IDSETRKMFIGEV 977
++ +Q DI TV ++L + W P+ I G
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 978 MELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1038 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1075
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-10
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ EL + VG G LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 576 ISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1040 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R + GRTV+ H+ + A D + ++++G
Sbjct: 635 NMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 74/275 (26%), Positives = 117/275 (42%), Gaps = 53/275 (19%)
Query: 156 HILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS-----LKVSG 210
L ++H IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G
Sbjct: 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 211 RVTYNGHNMDEFVPERTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
VT NG + R A A + Q + AFSAR + RY A
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----A 112
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGG 327
RR A + D ++ +A+A G A ++G DV +SGG
Sbjct: 113 RRAGALTHR---DGEIAWQALALAGATA---------LVGRDVTT-----------LSGG 149
Query: 328 QRKRVTTGEMM---------VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAV 378
+ RV ++ P L +DE + LD + ++++ ++ + + V
Sbjct: 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGV 208
Query: 379 ISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
++++ D I +L++G IV G VL
Sbjct: 209 LAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-10
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 26/211 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L GVS G + AL+G +GAGKTTL+ + G R G I ++G P
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP----PHE 74
Query: 932 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLK 987
R Y + P +TV E+LL A+ R D E ++ + EV EL LK +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARR----DKEAQERDLEEVYELFPRLKERR 130
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 131 NQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 1048 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G + + Q + A D ++++ G
Sbjct: 186 GGMTILLVEQ---NARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-10
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 859 PQQMKLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 914
Q ++L+ VS + L + G A++G SG+GK+TL+ +LAG
Sbjct: 334 GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQ 391
Query: 915 TGNIKVSGYP----KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETR 970
G+I ++G +Q IS ++ + S T+ ++L + P+ E
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE- 443
Query: 971 KMFIGEVMELVELKPLKQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ ++ V L+ L +S +G G LS +R+RL +A L+ + + +D
Sbjct: 444 ---LWAALQQVGLEKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLD 499
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
EPT GLD V+ + + G+T++ H
Sbjct: 500 EPTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-10
Identities = 62/288 (21%), Positives = 99/288 (34%), Gaps = 91/288 (31%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 NMDEFVPE-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGTR 259
++ + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------H 121
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319
+ AR+ L+ +GL D D
Sbjct: 122 GKGSRAEARKR----------------------------AVELLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGQRKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ-NIHIN 373
+SGG R+RV M+ ALA L DE +T LD +T QI++ K +
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 374 CG-------TAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
V++ L D ++++ G+IV GP E +L
Sbjct: 206 MAVLFITHDLGVVA---------ELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 46/197 (23%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L+DVS I G L ++LGP GKTTLL +AG + S G + NG ++ ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-MMVGPALAL 345
L ++GL + I +SGG R+RV + V P L L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQI 362
+DE LD+ T Q+
Sbjct: 155 LLDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 26/208 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L ++ G L ++G SG GKTTL++++AG Y G+I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994
G QN+ P+ V +++ + L ++ R ++++ V L+ ++ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1050
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1051 VVCTIHQPSIDIFEAF---DELFLMKRG 1075
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 9e-10
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 890 LMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPF 946
L+G SG GKTTL+ +LAG + G + V+ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006
+TV E++ + +R ++ K + E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDAR 1032
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 49/192 (25%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERR 70
Query: 226 RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
++ Y+ Q D + +VRE EL K
Sbjct: 71 KSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD---------- 101
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG-EMMVGPAL 343
N + LK L L + +SGGQ++R+ ++ G L
Sbjct: 102 ---------AGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDL 147
Query: 344 ALFMDEISTGLD 355
L DE ++GLD
Sbjct: 148 -LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 220
R T L +VS +K G + L+GP SGK+TLL A+AG L + SG + +G ++
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 221 EFVPE---RTAAYISQ 233
+ E R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 54/257 (21%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
Y + T+ E I + ++ L L + D + +SGGQR+R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
LA + +DE LD + QI+ ++ G ++ +L D I+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD-ELGKTIVVVLHDINFASCYSDHIVA 208
Query: 398 LSNGQIVYQGPRELVLE 414
L NG++V QG + +++
Sbjct: 209 LKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ET 929
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEIDSETRKMFIGEVMELVELK 984
FAR Y Q + +TV E + A R P + R+ + E + LV LK
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGLK 138
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1043
PL LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1044 TVDTGRTVVCTIH 1056
+ + G TV+ +H
Sbjct: 194 SQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK-- 926
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 927 -QETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
+ R G QN + S +++E++ A L + E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTLD-----------EAWEAARMA 565
Query: 985 PLKQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1036 IVM 1038
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKKQ 927
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 928 ---ETFARISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEIDSETRKMFIGE-VMEL 980
G Q P T+ E++ Y E++ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 981 VELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1040 TVRNTVDTGRTVVCTIH 1056
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
++ V+ G L+G SG+GKTT + ++ T G I +S
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEI---DSETRKMFIGEVMELVELKPLK 987
R GY Q P +TV E++ P++ D E K E+++LV L P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1044
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1045 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G+T+V H DI EA D + +M G
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 65/253 (25%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP--- 224
L +VS I+ G ++G SGK+TLL LAG + SG V +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L A AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL-RAAEL---AGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
GL D +G E RG+SGGQR+ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI------SLLQPAPETYNLFDD 394
L +DE ++ +D ++ ++ +Q + +I SLL L D
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQLL---GDKTLIIITHRPSLLD-------LVDR 207
Query: 395 IILLSNGQIVYQG 407
II++ +G+IV G
Sbjct: 208 IIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP-KKQETFARI 933
L GVS G +T ++G +G GKTTL+ L G +G+I++ G K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITKLPPHERA 73
Query: 934 S---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
Y Q P +TV E+LL R I + E+ EL P+ + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLKEM 124
Query: 991 VGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R G
Sbjct: 125 LGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG 182
Query: 1050 TVVCTIHQPSIDI-FEAFDELFLMKRGG 1076
+ + Q +D E D ++M+RG
Sbjct: 183 MAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 63/289 (21%), Positives = 110/289 (38%), Gaps = 81/289 (28%)
Query: 155 LHI-LPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGR 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHNMDEFVPERTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGTR 259
+ ++G ++ + A I Q D N + MT+ + +A R G G
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLRLHGKGLS 123
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD- 318
+ E A L+++G+ + +
Sbjct: 124 KKEAKERAIE--------------------------------LLELVGIPD-PERRLKSY 150
Query: 319 --EMIRGISGGQRKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIH 371
E+ SGG R+RV M+ ALA L DE +T LD + QI++ K+ +
Sbjct: 151 PHEL----SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQ 200
Query: 372 INCGTAVI------SLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
GTA+I ++ + D + ++ G+IV +GP E + +
Sbjct: 201 REKGTALILITHDLGVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 49/182 (26%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 925 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 979 ELVELKPLKQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
E+VE LK+ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1029 LD 1030
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNIKVSGYPKKQETFARISGYCEQN 940
G L L+G +GAGKTTL+ R G I G +KV+G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 941 DIHS-----PFVTVYESLLYS-----AWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1051 VVCTIHQPSIDIFEAFD 1067
++ T H D+ +A
Sbjct: 166 ILMTTH----DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 70/269 (26%), Positives = 104/269 (38%), Gaps = 76/269 (28%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L S SG + ++G ++D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 P-ERTAAYISQH-----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
L+++GL D +SGGQR+RV
Sbjct: 413 -------------------------LELVGLP----PEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ-NIHINCGTAVIS-----LLQPAP 386
+ ALA L +DE + LD S Q++N K + IS + A
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA- 497
Query: 387 ETYNLFDDIILLSNGQIVYQGPRELVLEF 415
D + ++ +G+IV +GP E V E
Sbjct: 498 ------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 49/252 (19%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHNMDEFVP 224
IL ++S IKPG + ++G SGK+TL KL V +GRV +GH++ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 225 E---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
R + Q +N + ++R+ +A + DP +
Sbjct: 72 AWLRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGM 103
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
+ EA + + + L DT+VG++ G+SGGQR+R+ ++
Sbjct: 104 SME------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHN 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
L DE ++ LD + I+ +N+H C + ++ T D II++ G
Sbjct: 157 PRILIFDEATSALDYESEHAIM----RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKG 212
Query: 402 QIVYQGPRELVL 413
+IV QG + +L
Sbjct: 213 RIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 61/265 (23%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
PSR ILK +S I PG+ L+G GK+T++ L D + SG + +G +
Sbjct: 11 PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVD 66
Query: 219 MDEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
+ + +SQ + + + T+ E + +
Sbjct: 67 IRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------------------- 100
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG--ISGGQRKRVT 333
KPD + +A +AN I D+ ++ L DT+VG+ RG +SGGQ++R+
Sbjct: 101 KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---RGSQLSGGQKQRIA 149
Query: 334 TGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPET 388
++ P + L +DE ++ LD+ + + T VI S ++ A
Sbjct: 150 IARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNA--- 204
Query: 389 YNLFDDIILLSNGQIVYQG-PRELV 412
D I +L NGQ+V QG EL+
Sbjct: 205 ----DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 18/195 (9%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGY 923
D L +G+S G + G +G+GKTTL+ +LAG G + N
Sbjct: 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN--GGPL 64
Query: 924 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
++++ AR Y ++V E+L + + E + E + V L
Sbjct: 65 DFQRDSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGL 115
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 116 NGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
Query: 1044 TVDTGRTVVCTIHQP 1058
G VV T HQ
Sbjct: 171 HCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 35/223 (15%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYP 924
+S D L ++ G AL+G SGAGKT+L++ L G ++ G++K++G
Sbjct: 358 LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIE 412
Query: 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
++ E++ + + QN P T+ +++L P+ E ++ + +
Sbjct: 413 LRELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDE-------QLQQAL 459
Query: 982 ELKPLKQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
E + + L LP +GLS Q +RL +A L+ ++ +DEPT+ LDA
Sbjct: 460 ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +VM+ + N +T + HQ ++ +D++++M+ G
Sbjct: 520 SEQLVMQAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 27/225 (12%)
Query: 860 QQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 919
M+L V++ L +SG R G + L+G +GAGK+TL+ +AG +G +G+I+
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 920 VSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+G P + AR Y Q +P W L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 977 VMELVEL-KPLKQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1030
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + R + G +V + H + + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFVPE 225
++ VS ++ G + LLGP +GKTT + L L + SGR T GH++ +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R + Q + E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALAL 345
D L +GL D +++ SGG R+R+ +V L
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405
F+DE + GLD T + ++ + G ++ E L D + ++ +G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 55/215 (25%)
Query: 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG- 216
+ + L+ILK V ++K G ++GP SGK+TLL LAG D S SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 217 --HNMDE----FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
H +DE + R ++ Q + I +T E +A +G + A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI---RGISGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
+++RV G LF DE + LD +T +I
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 43/184 (23%)
Query: 859 PQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GG 912
++ + VS D +LL +S G A++G +GAGK+TL+ +LAG G
Sbjct: 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378
Query: 913 YITG-NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
G +K+ + + ++ D +++L P + E R
Sbjct: 379 VKVGETVKIGYFDQHRDEL--------DPD---------KTVLEELSEGFPDGDEQEVRA 421
Query: 972 M-----FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
F GE E KP V LS ++ RL +A L+ P+++ +DEPT
Sbjct: 422 YLGRFGFTGEDQE----KP----------VGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
Query: 1027 SGLD 1030
+ LD
Sbjct: 468 NHLD 471
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
LL VS PG L+G +GAGK+TL+ +LAG +G + K
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVT----RPKGLRV-- 68
Query: 933 ISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
GY Q P TV + ++ + L E++ + + L EL+ L + L
Sbjct: 69 --GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 991 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1032 RA 1033
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+L D+S I+ G + +LGP +GK+TLL LAG L S SG + +G ++ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQ---ET 929
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSET--RKMFIGEVMELVELKPLK 987
R GY Q D + T+ +++ A P D E R + V E V P
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEEILRAAELAGVTEFVRRHPDG 590
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++ +
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-A 649
Query: 1048 GRTVVCTIHQPSI 1060
G+T+V H+ S+
Sbjct: 650 GKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 5e-09
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 41/227 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSG---YPKKQ 927
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 928 ETFARISG----YCEQNDIHS--PFVTV----YESLLYSAWLRLPPEIDSETRKMFIGEV 977
+ +I G Q+ + S P +T+ E L ++K
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 978 MELVELKPLKQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1030 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 46/246 (18%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV 223
HL + D++ + G + +LGP +GK+TLL +AG SG + NG +
Sbjct: 13 HLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASP 67
Query: 224 P-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P ER + + Q +N +TV + + G+ P
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+K A + ++ +GL + +SGGQR+RV +V
Sbjct: 100 --LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE + LD + +++ Q + ++ + + + D ++ L NG+
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 403 IVYQGP 408
I QG
Sbjct: 208 IAAQGS 213
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ 927
+L G+ + G + ++G SG+GK+TL+ + G I +K++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEIDSETRKMFIGEVMELVELKPL 986
+ G Q P +TV E++ + ++ + ++E R + E++E V L
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL---ELLEKVGLADK 128
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ P + LS Q++R+ IA L NP ++ DEPTS LD V+ +++ +
Sbjct: 129 ADAY---P--AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 1047 TGRTVVCTIHQ 1057
G T+V H+
Sbjct: 184 EGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S I G L+GP SGK+TL+ + D SGR+ +GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ G E+ +AA
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAAN--------- 116
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI--SGGQRKRVTTGEMMVGP 341
A E I + L DTV+G+ RG+ SGGQR+R+ ++
Sbjct: 117 -----AHE-----FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNLFDDIIL 397
L +DE ++ LD+ + + + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSNGQIVYQG 407
L +G+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 63/257 (24%), Positives = 92/257 (35%), Gaps = 56/257 (21%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG SG + +G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG-PRELVLEFFESM 419
Q+ K I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 6e-09
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 16/200 (8%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKVSGYPKKQET--FARISGYC 937
+ G TAL+G +G+GK+TL+ L G + T G + G+I VS K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPE--IDSETRKMFIGEVMELVELKPLKQSLVGLPG 995
Q P ++E + P I E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP- 142
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 -FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1056 HQPSIDIFEAFDELFLMKRG 1075
H D+ + D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 48/217 (22%), Positives = 70/217 (32%), Gaps = 51/217 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
Y+ E+T E L F R G G + E + AG+
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL------- 123
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
D + +S GQ++RV + + PA
Sbjct: 124 ----------------------------------EDLPVGQLSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI 379
+DE T LD + H G V+
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 45/245 (18%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG-YPKKQE 928
++LV LN +S F + ++G SG+GK+TL+ G Y G I+V Y ++
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKK 94
Query: 929 TFARISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEIDSET 969
+ I + V T+ + +++ + +++
Sbjct: 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK 154
Query: 970 RKMFIGEVMEL----VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
F M L +E P GLS Q++R+ IA L P I+ DEP
Sbjct: 155 LAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEP 203
Query: 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------YE 1078
T+GLD + +M+ + + +TV H + E DE+ +M +G YE
Sbjct: 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYE 262
Query: 1079 IYVGP 1083
I+
Sbjct: 263 IFTDQ 267
|
Length = 320 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 877 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSG---YPKKQETF 930
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 931 A--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
A R G Q P ++V+++++ A L+L D + +ME+ E
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAERSLRGA 132
Query: 989 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MR 1039
+L + P +GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 133 ALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 1040 TVRNTVDTGRTVVCTIHQPS 1059
T V T V +HQ +
Sbjct: 192 TDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 9e-09
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYITGNIK-VSGYPK 925
+ VS PG + ++G SG+GK+T LM +L GR T G + + + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 926 KQET--FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
++ + Q+ + S P +T+ + + + L +E RK + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS-RAEARKRAV-ELLEQV 140
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L P + P LS R+R+ IA+ L P ++ DEPT+ LD A ++ +
Sbjct: 141 GL-PDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 1042 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
++ + G V+ H + + E D + +M +G
Sbjct: 198 KDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 48/256 (18%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV 223
+LKDVS I G+ ++GP SGK+T+L L D S SG + +G ++ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIRE-- 67
Query: 224 PERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ IG + ++T+ F+ G RY R A D
Sbjct: 68 -------VTLDSLRRAIG-VVPQDTVLFNDTI-GYNIRYG-------RPDAT------DE 105
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG--ISGGQRKRVTTGEMMV 339
+V A A + I D K++ DT+VG+ RG +SGG+++RV ++
Sbjct: 106 EVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAIL 153
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399
L +DE ++ LD+ T +I + G I + N D II+L
Sbjct: 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK---GRTTIVIAHRLSTIVNA-DKIIVLK 209
Query: 400 NGQIVYQG-PRELVLE 414
+G+IV +G EL+ +
Sbjct: 210 DGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 62/274 (22%), Positives = 98/274 (35%), Gaps = 62/274 (22%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
L VS IK G LLGP GKTTLL +AG + SG + +G ++ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
+ + EG + +SGGQ++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLD----SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
L +DE LD ++ + + G + + E + D I +++
Sbjct: 152 LLLDEPLGALDLKLRKDMQLEL-----KRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G+I G P E+ E P + VADF+
Sbjct: 207 GKIQQIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 876 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISG 935
VS PG + ++G SG+GK+TL+ LAGR G Y + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTA---TYIMRSGAELELYQ 74
Query: 936 YCEQND---IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIG------------EVMEL 980
E + + + V+++ +R+ + R M IG + +E
Sbjct: 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
VE+ P + + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 135 VEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 1041 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R V D G V+ H + A L +M++G
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 69/294 (23%), Positives = 106/294 (36%), Gaps = 77/294 (26%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 220
+T L DVS I G + ++G +GK+TLL + L+ SG V +G ++
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDLT 71
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVG--TRYEMLTELARREKA 272
+ I QH N + TV E +AF GV + + EL
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--- 128
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
+ + KA Q +SGGQ++RV
Sbjct: 129 --------VGLSDKADRYPAQ------------------------------LSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINC--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ K IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
E + D + +L G++V +G V E F + PK +F+ E
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 44/215 (20%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA 931
L ++ G L A++G G+GK++L+ L G K G ++ ++
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 932 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LK 987
Y Q P++ T+ E++L+ D E + +V++ L+P L+
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEERYE----KVIKACALEPDLE 111
Query: 988 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1040
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS---GYCEQN---DI 942
A++G +GAGK+TL G +G++ + G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002
SP TV + + A+ + +D ET + + ++ L+ L+ + P LS
Sbjct: 92 FSP--TVEQDI---AFGPINLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1061
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1062 IFEAFDELFLMKRG 1075
+ E D +++M +G
Sbjct: 201 VPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP----KKQET 929
+L+GV + R G L L+G +GAGKTTL+ + G T G + V+G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 930 FARISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
R++ + + F V E R +++ + ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGV---- 129
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1048 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1076
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 51/220 (23%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
L ++ I G L+GP +GK+TLL + + L SG + NG ++ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVIS 380
L DE + LD TT++I+N K+ I+ T V++
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 45/219 (20%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926
VS + +L GV+ + G + A+MG +G+GK+TL +AG + +G I G
Sbjct: 8 VSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG---- 63
Query: 927 QETFARISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEIDSETRKMFI--------- 974
Q+ + E L+ A+ + P EI + F+
Sbjct: 64 QDLLE---------------LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRS 107
Query: 975 --GE----VMELVELKPLKQSLVGLPGV-------SGLSTEQRKRLTIAVELVANPSIIF 1021
GE +++ ++L K +L+G+ G S ++KR I + P +
Sbjct: 108 ARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI 167
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+DE SGLD A IV + + R+ + H +
Sbjct: 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 66/249 (26%), Positives = 99/249 (39%), Gaps = 45/249 (18%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--DEFV 223
IL D+S + PG ++GP +GKTTLL L G+ S SG VT G E +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 224 PE--RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
E + +S H+ TVR+ + S +G E LT A +
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTA-EDLAAAQWL---- 155
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
L++LG AD G +S G+++RV +V
Sbjct: 156 -----------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARALV 187
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398
P L L +DE + GLD Q++N ++ A++ + A E F +LL
Sbjct: 188 KDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 399 SNGQIVYQG 407
G++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 63/276 (22%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
T+L D+S I+ G L L+G GKTTLL A+AG + ++ ++GR+ ++ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R A++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQ------NIHINCGTAVISLLQPAPETYNLFDDIILL 398
L +DE + LD++ + + I C T + L D ++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVT------HDQDDALTLADKAGIM 212
Query: 399 SNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+G++ G P+ L + P A+FL
Sbjct: 213 KDGRLAAHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 42/184 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 925 KKQETFA---RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL 980
KK + R+ G Q +PF +++Y+++ Y P + K + E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 981 VELKPLKQSLVGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+ LK+ L V GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 ---ESLKK--AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177
Query: 1032 RAAA 1035
A
Sbjct: 178 IATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 33/207 (15%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSGYPKKQETFARISGYC 937
F G +TA++G SG+GK+TL++++AG +T G + + V+ P +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP---VSMLF 76
Query: 938 EQNDIHSPFVTVYES--LLYSAWLRLPPE----IDSETRKMFIGEVMELVELKPLKQSLV 991
++N++ +TV ++ L S L+L E I+ ++ + + +
Sbjct: 77 QENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR----------- 124
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTG 1048
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 -LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETK 179
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRG 1075
TV+ HQP D + + G
Sbjct: 180 MTVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT-GNIKVSGY 923
+ + LNG+S G ++G +GAGK+TL++ +AG T G I + V+
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 924 PKKQ--ETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEIDSETRK 971
+ AR+ +G P +T+ E+L A R L ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 972 MFIGEVMELVE-LKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
F + L L+ +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1031 ARAAAIVM 1038
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 65/267 (24%), Positives = 107/267 (40%), Gaps = 45/267 (16%)
Query: 147 IFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL 206
G + + ++ S +LKD+S I+PG ++GP SGK+TL+ L D +
Sbjct: 324 DTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT- 382
Query: 207 KVSGRVTYNGHN---MDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
SG + +G + + + +SQ D + T+RE +A G
Sbjct: 383 --SGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATD 432
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323
E+ K A + L DT+VG E
Sbjct: 433 EEIEEALKLANAHEF--------------------------IANLPDGYDTIVG-ERGVN 465
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQR+R+ ++ L +DE ++ LD+ T I + K+ + T +I +
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR--TTLIIAHR 523
Query: 384 PAPETYNLFDDIILLSNGQIVYQGPRE 410
+ T D II+L NG+IV +G E
Sbjct: 524 LS--TIKNADRIIVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 64/272 (23%), Positives = 99/272 (36%), Gaps = 65/272 (23%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---NMD 220
+ + DV+ I+ G +L+GP SGKTT L + ++ + SG + +G ++D
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLD 69
Query: 221 EFVPERTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R Y+ Q IG +TV E +A + G
Sbjct: 70 PVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDK------------------- 107
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
+ D L ++GLD D +SGGQ++RV
Sbjct: 108 ---------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG---- 145
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
V ALA L MDE LD T Q+ K + G ++ + E L
Sbjct: 146 -VARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLA 203
Query: 393 DDIILLSNGQIVYQG-PRELVL----EFFESM 419
D I ++ G+IV P E++ +F E
Sbjct: 204 DRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L G+S + G TAL+G +GAGK+TL+ L G G +KV G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 935 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEIDSETRKMFIGEVMELVELKPLKQ 988
G Q+ F TV++ + + + L E++ E ++ V + +
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1049 RTVVCTIH 1056
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQ 927
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 928 ETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEIDSETRKMFIGEVMELV----- 981
IS Y E +HS V E +L++ L+ I + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHA 129
Query: 982 -----ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1037 VMRTVRNTVDTGRTVVCTIHQ 1057
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G++T L+GP GK+TLL A L SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A ++ QH +TVRE +A+ R L+ R
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRL------------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
E N + ++ ++ AD + D +SGGQR+R ++
Sbjct: 112 ---------SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
+ +DE +T LD + +++ ++ G V+++L + D +++L+NG
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP-------KK 926
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
E + G+ Q P T E++ +P I + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G+S + G + ++G SG+GK+TL+ L G G IT + + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEV----MELVELKPLKQ 988
G Q P +TV E++ L P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 989 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 1044 TVDTGRTVVCTIHQ 1057
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T L D+S ++ G + LLGP +GKTT + + G + SG V ++G +D
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGEMMVGPALA 344
D +L+ L L A+ V +E+ S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
L +DE +GLD ++ + G VI L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSG---YPKKQE 928
L G+ F +TAL+G SG GK+T + L G ITGN+ + G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 929 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
+ G Q PF ++YE+++Y LRL D K + E +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 987 KQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
KQ+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 56/186 (30%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKKQ 927
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 928 ETFARISGYCEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEIDSETRKMF 973
+ Y D++ PF +++Y+++ Y P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 974 IGEVMELV--------ELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
+ E++E E+K LK+S +GL G Q++RL IA L P ++ MDE
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDE 172
Query: 1025 PTSGLD 1030
PTS LD
Sbjct: 173 PTSALD 178
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 8e-08
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETF 930
L+ VS + G + AL+G +G+GK+TL+ +AG + T G I + K +E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR 72
Query: 931 ARISGYCEQ 939
RI GY Q
Sbjct: 73 RRI-GYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-08
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 52/254 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
L +S +I+PG L+G SGK+TL+ + + SG++ +GH++ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q A E+A
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL----------- 443
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
A D+ V L + DT +G+ + +SGGQR+R+ ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNLFDDIILLSN 400
L +DE ++ LD+ + + + + T VI S ++ A D I+++ +
Sbjct: 491 LILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDD 542
Query: 401 GQIVYQGPRELVLE 414
G+IV +G +L
Sbjct: 543 GRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP------KKQ 927
+L VS + G L+G SG GK+TL +L G + G + G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 928 ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
F R Q+ + P +TV + + LR +D +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 54/271 (19%)
Query: 156 HILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
H +++ + ++D+S I G + LG +GK+T L L G L L SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVN 84
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
G P R + + M + L + E+L +
Sbjct: 85 G-----KDPFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE------- 127
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
PD D + + + D+ ++L L + + + R +S GQR R
Sbjct: 128 IPD---DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELA 168
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395
++ P LF+DE + GLD + I F + + V LL T ++FDDI
Sbjct: 169 AALLHPPKVLFLDEPTVGLDVNAQANIRE-FLKEYNEERQATV--LL-----TTHIFDDI 220
Query: 396 -------ILLSNGQIVYQGPRELVLEFFESM 419
+L+ GQ+V+ G + E F
Sbjct: 221 ATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 55/260 (21%)
Query: 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM--- 219
Q LK+ + + G +LG SGK+TLL LAG D G +T NG +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
DE T + ++Q H+ T+R+ L + PD
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDA 439
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
D + A + ++ +T +G E R +SGG+R+R+ ++
Sbjct: 440 S-DEELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALL 490
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL-----FDD 394
A +DE + GLD T Q++ + + + ++ T+ L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVL----ALLFEHAEGKTLLMV-----THRLRGLERMDR 541
Query: 395 IILLSNGQIVYQGPRELVLE 414
II+L NG+I+ +G +L
Sbjct: 542 IIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 61/212 (28%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLL--LALAGKLDSSLKVSGRVTYNGHN-----M 219
LKD++ I ++T L+GP GK+TLL L L +V G V +G N +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIKPD 278
D R + Q N M++ + +A+ R G+ + + L E+ K A
Sbjct: 82 DVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKA----- 133
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR---GISGGQRKRVTTG 335
A+ E V D + + G+SGGQ++R+
Sbjct: 134 --------ALWDE------------------------VKDRLHKSALGLSGGQQQRLC-- 159
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 160 ---IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 70/248 (28%), Positives = 98/248 (39%), Gaps = 66/248 (26%)
Query: 177 PGRLTLLLGPPASGKTTLL---LALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
G L LLGP +GKTTLL L L ++KV+G G +VP+R
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGGQR+RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404
L +DE TGLD T + F + GTA++ + D ++LL NG+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 157 ILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
I+P + L+ +S ++ G ++GP SGK+TL + G SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDG 379
Query: 217 HNMDEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
++ ++ E + Y+ Q D + TV E +A R+
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF------------- 415
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT 333
G DP+ K I EA + + +L L DTV+G +SGGQR+R+
Sbjct: 416 GENADPE-----KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393
+ G + +DE ++ LD + N K VI+ P D
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT---HRPSLLGCVD 521
Query: 394 DIILLSNGQIVYQGPRELVL 413
I++L +G+I G R+ VL
Sbjct: 522 KILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 44/196 (22%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L+D++ ++ G L ++LGP GKTTLL +AG + G +T +G ++ ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV R E A + +K
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIAHQM---------LK 114
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
+ EG E I +SGGQR+RV + L
Sbjct: 115 KVGLEGAEKRYIWQ-----------------------LSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQI 362
+DE LD+ T Q+
Sbjct: 152 LDEPFGALDAFTREQM 167
|
Length = 255 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNIKVSG---YPKKQ 927
L+G+S F LTAL+G SG GK+T + L R ITG IK G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 928 ETFA--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL-K 984
+ + G Q PF +VY+++ Y L++ D E + E ++ + K
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWK 135
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
K +L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 136 ETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 36/228 (15%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITG-NIKVSGYP 924
+LNG+S G A++G SGAGK+T++ DV +G T I G +I+
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV--- 330
Query: 925 KKQETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
Q++ R G Q ND T+ ++ Y E+ + I + ++
Sbjct: 331 -TQQSLRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ 383
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
L + VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 384 --SLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440
Query: 1040 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087
+R V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 441 ALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYP--- 924
L ++ + +TAL+G SG GK+TL+ D++ G + ITG+I +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 925 KKQETFA--RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
+ A R G Q +PF ++YE++ Y P I E K + ++E
Sbjct: 78 SGADVVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE-- 127
Query: 982 ELKPLKQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
K LK + + LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1035 A 1035
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 66/275 (24%), Positives = 104/275 (37%), Gaps = 58/275 (21%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMDEFV 223
++ ++ I G LLGP GKTT+L +AG D SGR+ +G ++
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 224 PE-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
E R + Q MTV E +AF R Q E+ R A
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE + LD Q+ N K + G + + E + D I+++ +G+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
I G PRE+ ++ PK VA F+ E+
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEI 248
|
Length = 375 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 49/240 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L SG V G ++ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
MK + + +I ++ + I +S G R+RV + ++
Sbjct: 105 MKGQLLKQRVEEMI----------ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404
L +DE +TGLD + +I N K I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIKVSGYPKKQE 928
LL +S G L L G +GAGKTTL+ ++AG G I +IK K
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK-----KDLC 70
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
T+ + + +P++T+ E+ LY +I + I E+ L L+ L
Sbjct: 71 TYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLID 122
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 123 YPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKG 177
Query: 1049 RTVVCTIHQ 1057
V+ T HQ
Sbjct: 178 GAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF- 222
+L D+S I G++ LLGP SGKTTLL +AG L+ + SG + ++G ++
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK--AAGIK 276
+R ++ QH MTV + +AF LT L RRE+ AA IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETF 930
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + VS +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R G+ Q+ +TV++++ + L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 37/218 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NIKVSGYPKK 926
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
+E + G Q P +T+ ++ L + RK + +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERKE---KALELLKL--- 116
Query: 987 KQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1042 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 50/234 (21%)
Query: 178 GRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN 236
G + ++GP +GK+TLL +AG ++ SG + N + P +R + + Q +N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 297 VITDYYLKVLGLDVCADTVVGDEMIR---GISGGQRKRVTTGEMMVGPALALFMDEISTG 353
D + D + R +SGGQR+RV +V P L +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 354 LDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
LD +++ KQ T ++ + + + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 48/203 (23%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + Q D+ + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
L +G + +SGG++KRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIV 363
L +DE + GLD + Q++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQML 167
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ Y+ Q D + +TV + +A +G RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------ 111
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
L+++GL D +SGG R+RV A+A
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922
V+ +L +S PG +TAL+G +GAGK+TL+ LAG TGG +V+G
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
|
Length = 272 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 863 KLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIK 919
K+ + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 920 VSGYPKKQETFARIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
++ + T AR G Q N + S TV+ ++ LP E+D+ + +
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRK 120
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V EL+ L L P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 121 VTELLALVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM----DE-- 221
+ V+ ++ G + LGP +GKTT + L L + SG G+++ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
VP+ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
L++ L D + SGG R+R+
Sbjct: 109 -------------------------LELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394
++ LF+DE +TGLD T + + K+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-----GVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSNGQIVYQG-PREL 411
I ++ +G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 56/222 (25%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L DVS I+ G L GP +GKTTLL L G L S G+V G +++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCFKQ-NIHINCGTAVI 379
P L L DE + LD + +I++ K+ N GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKRLNKR---GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 69/225 (30%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L + + VL + GVSG+GK+TL+ G Y +G ++ + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK----PLKQSL 990
S + +FI ++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP-LGRHSCHLV 1092
TV+ H + + + I GP G+ +V
Sbjct: 140 NTVILIEHNLDV-----------LSSADWIIDFGPGSGKSGGKVV 173
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 49/253 (19%)
Query: 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
FD+V +S D QGV D VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 908 RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 961
++ +G I + G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 962 PPEIDSETRKMF-IGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
P D E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFEA------- 1065
+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1066 -FDELFLMKRGGY 1077
FDE L+ RGG
Sbjct: 552 SFDE--LVARGGR 562
|
Length = 588 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ--ET 929
+N S G + +MG+SG+GK+TL+ +L T G I ++ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
+ Q+ P TV E++ + ++ P+ + E R + E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETF 930
+LN +S + R G A+ G SG GK+TL+ ++A T G + + VS K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--KPEAY 75
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
+ YC Q TV ++L++ +R R + +L+ L S+
Sbjct: 76 RQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAAL----DLLARFALPDSI 126
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNTVD 1046
+ ++ LS +++R+ + L P I+ +DE TS LD ++ R VR +
Sbjct: 127 LTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR---E 182
Query: 1047 TGRTVVCTIHQP 1058
V+ H
Sbjct: 183 QNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-07
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 40/194 (20%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI-KVSGYPKKQETFARISGYCEQND 941
RPG + ++G +G GK+T + +LAG + N+ + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 942 IHSPFVTVYESLLYSAWLR----------LPPEIDSETRKM--------FIGEVMELVEL 983
Y LY LR +P + + ++ EV+E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 984 KP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ L + VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDRD------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIR 257
Query: 1043 NTVDTGRTVVCTIH 1056
+ G+ V+ H
Sbjct: 258 ELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP------KK 926
LN VS + + G AL+G SG GK+TL +L G + G N+ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 927 QETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
++ F R Q+ I + P TV E + LR +D R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN---MD 220
T+L DVS I+ G + LLGP SGK+TLL +AG L+ SG + +G + ++
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDLE 68
Query: 221 EFVP--ERTAAYISQHDNHIGEMTVRETLAF 249
+ +P R + Q +TV E +A
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKVSGYPKKQ-- 927
V +N VS R G + +MG+SG+GK+TL+ + T G + ++ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
E + Q+ P TV E++ + ++ P + E R E +ELV L+ +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1043
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 70/280 (25%), Positives = 108/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
+ +++ I G +L+GP SGKTT + + ++ + SG + +G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
ALA L MDE LD T Q+ FK + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ NG+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 36/189 (19%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNIK-VSGYPKKQETFARISGYCEQND 941
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 942 IHSPFVTVYESLLYSAWLRLPP----------EIDSETRKMFIGEVMELVELKPLKQSLV 991
+TV +++ L L P ++ +++ I + ++
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR----------- 124
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1050
LP LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT
Sbjct: 125 -LPE--QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT 181
Query: 1051 VVCTIHQPS 1059
++ H S
Sbjct: 182 LLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIK- 919
M+L V+ L +S R G + L+G +GAGK+TL+ +AG G G I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQP 58
Query: 920 VSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
+ + AR Y Q + V++ L L P + +E + EV E
Sbjct: 59 LEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAE 112
Query: 980 LVELKPLKQSLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDA 1031
+ L +G V+ LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 113 ALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDV 166
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIH 1056
A + R + G VV + H
Sbjct: 167 AQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 890 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-IKVSGYPKKQETFA--RISGYCEQNDI 942
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002
P +TV E+L+ A R+ + +L++ LK P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YP 924
L G+S + A +G SG GK+T + D++ + + G I++ G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 925 KKQET--FARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
K + + G Q +PF +++E++ Y LR+ D+ + + E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 982 EL-----KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L LK+S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 1037 V 1037
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 33/214 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L VS + G A++G +G+GK+TL +L G G I V G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 933 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
+ G QN P FV TV + + + E R+ + V + +
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQV 128
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
++ L P LS Q++R+ IA L P II +DE TS LD R V+ TVR
Sbjct: 129 GMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 1045 VDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1075
+ TV+ H D+ EA D + +M +G
Sbjct: 187 KEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-07
Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 51/327 (15%)
Query: 99 FLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIA-SKALPSFTKFYTSIFEGFLNYLHI 157
FL L+N I + L V LN E Y+ S+ + + + G + +
Sbjct: 424 FLTPLENIIN-LQPKLQAARVANNRLN---EVYLVDSEFINKKKRTELNNLNGDIVINDV 479
Query: 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217
S IL D+S IK T ++G SGK+TL L G + SG + NG
Sbjct: 480 SYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGF 536
Query: 218 NMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
++ + +R + Q N++ + E FS G+ E L G K
Sbjct: 537 SLKDI--DRHT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKE 574
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
+ D A A + D LG T + +E ISGGQ++R+
Sbjct: 575 NVSQDEIWAACEI----AEIKDDIENMPLGY----QTELSEEG-SSISGGQKQRIALARA 625
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA--VISLLQPAPETYNLFDDI 395
++ + L +DE ++ LD+ T +IVN +++ T V L A ++ D I
Sbjct: 626 LLTDSKVLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKI 678
Query: 396 ILLSNGQIVYQGP-RELVLE--FFESM 419
I+L +G+I+ QG EL+ F+ S+
Sbjct: 679 IVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGQRKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAV 378
+ +SGGQR+RV ++ P L L +DE ++GLD ++ +++ ++ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 379 ISLLQPAPETYNLFDDIILLSNGQ 402
I + D +I+L +G+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 51/259 (19%), Positives = 103/259 (39%), Gaps = 61/259 (23%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFV 223
+LKD++ IKPG ++GP +GKTTL+ L D G++ +G ++
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 YMKAIATEGQEANVITDYYLKVL--GLDVCADTVVGDEMIRG--ISGGQRKRVTTGEMMV 339
++A G ++ L G DTV+G+ G +S G+R+ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNLFDDI 395
L +DE ++ +D+ T +++ + + + +I S ++ A D I
Sbjct: 156 RDPKILILDEATSNIDTETE-KLIQEALEKLMKGRTSIIIAHRLSTIKNA-------DKI 207
Query: 396 ILLSNGQIVYQGPRELVLE 414
++L +G+I+ +G + +L
Sbjct: 208 LVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 59/273 (21%), Positives = 95/273 (34%), Gaps = 62/273 (22%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
K L +VS I+ G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 219 MDEFVPERTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ--- 127
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
G+ P + ++ G GQR+R+
Sbjct: 128 VGLPPS------------------FLDRRPHELSG-------------------GQRQRI 150
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI-HINCGTAVIS----LLQPAP 386
++ P L L +DE ++ LD S QI+N + IS L+
Sbjct: 151 AIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV---- 205
Query: 387 ETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
++ D I ++ NGQIV GP E +L
Sbjct: 206 --EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 50/193 (25%), Positives = 73/193 (37%), Gaps = 27/193 (13%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G E+L EL D +
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ EA L LG D + +SGG R+RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFP------DEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLD 355
L +DE + LD
Sbjct: 173 DLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + G V + G ++ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
A GE +AF GV ++ + T L G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV-GPA 342
+++ + K+ L + D + + G SGG++KR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YP 924
L V +TA +G SG GK+T + D + G + +TG I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 925 KKQ---ETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL 980
+ E AR+ G Q +PF ++YE++ Y P I R E+ E+
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSK--AELDEI 139
Query: 981 VELKPLKQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
VE L+++ GL PG +GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 140 VE-TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 1031 ARAAAIV 1037
A A V
Sbjct: 196 PIATAKV 202
|
Length = 267 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 44/186 (23%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L+GV+ +TALMG SG+GK+TL+ V N + YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 934 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEIDSETRK 971
SG Y + DI P ++++E++ L+L + S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 972 MF--IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1030 DARAAA 1035
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
+ Q + P T+ E+L Y P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 993 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YPKKQETFARIS-G 935
+TAL+G SG GK+TL+ D++ G K ITG + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 936 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994
Q +PF +++YE++ Y LR D + + + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L GV+ + G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL-----KPLKQS 989
+ QN P++TV E+ + A R+ P++ R+ + E + LV L K Q
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ- 114
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 115 ---------LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKR 1074
TV+ H D+ EA L L R
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGNIKVSGYPKKQET 929
++ VS + G + ++G SGAGKTTL ++AG T G + G+ V +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 930 FARISGYC----EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
R Y ++ D++ P TV ++L + L LP E+ K I M + +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
++ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1046 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083
+ +T + H + + D LM R G + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNIKVSGYPKK 926
+L V +PG + G +G+GK++L +D+ G+ + I +S P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPEIDSETRKMFIGEVMELVELK 984
+R+S + + + +L+S +R L PE +++ E +E+ +LK
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 985 PLKQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 48/204 (23%), Positives = 69/204 (33%), Gaps = 68/204 (33%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYNGHNMDEF 222
++ +S ++ G LLGP +GKTT +LL L S+ + G E
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EP 70
Query: 223 VPERT------AAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREK 271
VP R + Q DN + TVRE L R G+ L E A+ E
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKR 331
A D + +SGG ++R
Sbjct: 131 KA--------------------------------------------DAKVGELSGGMKRR 146
Query: 332 VTTGEMMVGPALALFMDEISTGLD 355
+T +V L +DE +TGLD
Sbjct: 147 LTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q ++V + L F+ A +K
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------PATLK-------- 107
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
G + L+ GLD +SGGQR RV ++ A
Sbjct: 108 -------GNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 34/192 (17%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSGYPKKQETFARISGYC 937
G + A++G SGAGK+TL++++AG +T G + + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 938 EQNDIHSPFVTVYES--LLYSAWLRLPPE----IDSETRKMFIGEVMELVELKPLKQSLV 991
E N +TV ++ L S L+L E +++ ++ + ++
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR----------- 125
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DT 1047
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 -LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDER 179
Query: 1048 GRTVVCTIHQPS 1059
T++ H P
Sbjct: 180 KMTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 220
+K+V+ ++ G + L+GP GKTT L A+ L +V+GR+ +G ++ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
R + Q N M+V + + + G+ R + L E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
+ +K AT G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
L MDE ++ LD ++T +I + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 935 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEIDSET--RKMFIGEVMELVELKPLK-QS 989
D+ T+ ++ Y + D R + + V+ PL +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--- 1046
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 462 PIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLM 516
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
GRT + H+ S E D + +M G
Sbjct: 517 QGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 2e-06
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNIKVSGYPK 925
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G + Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
E F R G Q P + L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+K L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1046 DTGRTVVCT 1054
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 35/197 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNIKVSGYPKKQ--E 928
L +S + +PG ++G +G+GK++L+ L R + G I + +S
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL---PPEIDSETRKMFIGEVMELVELKP 985
+ I Q + +L+S +R P S+ + + +E V LK
Sbjct: 79 RISIIP----Q-----------DPVLFSGTIRSNLDPFGEYSDEE---LWQALERVGLKE 120
Query: 986 L-KQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ GL V LS QR+ L +A L+ I+ +DE T+ +D A++ +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1040 TVRNTVDTGRTVVCTIH 1056
T+R TV+ H
Sbjct: 181 TIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 861 QMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI 918
M+ G L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I
Sbjct: 12 MMRFGG-----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 919 K-VSGYPKKQ-------ETFARISGYCEQNDIHSPFVTVYESLL-----------YSAWL 959
+ + G P Q TF + + E +TV E+LL +S L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLL 118
Query: 960 RLPPEIDSETRKM-FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018
+ P +E+ + +E V L G L+ Q++RL IA +V P
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPE 173
Query: 1019 IIFMDEPTSGLD 1030
I+ +DEP +GL+
Sbjct: 174 ILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+ ++++ I G T ++GP GK+TLL L+ + G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
KA+ G IT + D+ + +SGGQR+R ++
Sbjct: 123 AVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
+ +DE +T LD S ++ + ++ G + ++L + +I L G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNIKVSG---YPKKQETF 930
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 931 A--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
A R G Q P +++ ++++ A L+L + K ++ ELVE +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKL----NGVRNK---KDLDELVE-----K 127
Query: 989 SLVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
SL G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 128 SLRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 47/217 (21%), Positives = 72/217 (33%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG--HNMDEF 222
+ + +S + G + GP GKTTLL LAG L SG V +NG
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P R Y+ E++ E L F A G G + + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+GL D +S GQ++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI 379
+DE +T LD + + + H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 36/217 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 933 ISGYCEQNDI---HSPFVTVYE-SLLYSAWL-RLPPE---ID-----SETRKMFIGEVME 979
S +N I H V + S++ + WL R P + +D +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 980 L-VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L +++ P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R + G +V H+ +IF+ DE+ +++ G
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISG 935
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 936 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994
+ + N +P + + + LRL +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 1062
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H D+
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH----DL 212
Query: 1063 FEA---FDELFLMKRG 1075
A L +MK+G
Sbjct: 213 AVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKKQ 927
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 928 ETF-----ARISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
F R G Q +PF+ ++Y+++ Y P+I K + E++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVE-- 128
Query: 982 ELKPLKQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ LK+S + LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 129 --QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 1035 AIVMRTVRNTVDTGRTVVCT 1054
+ + N ++ ++ T
Sbjct: 187 GKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 35/186 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE------------ 982
E+ I +++ L L E+ S +F+G E+
Sbjct: 78 D-TERAGI----AIIHQELA------LVKEL-SVLENIFLGN--EITPGGIMDYDAMYLR 123
Query: 983 ----LKPLKQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L LK + P V L Q++ + IA L ++ +DEPT+ L A++
Sbjct: 124 AQKLLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182
Query: 1038 MRTVRN 1043
+ +R+
Sbjct: 183 LDIIRD 188
|
Length = 506 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 36/167 (21%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGY----PKKQETFARIS- 934
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV--- 991
G Q P +++Y+++ + P I K + ++E + LK++ +
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVE----ESLKKAALWDE 135
Query: 992 -----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 136 VKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-06
Identities = 69/254 (27%), Positives = 102/254 (40%), Gaps = 52/254 (20%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
ILK +S ++ G ++GP SGK+TL L G SG V +G ++ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPDPDIDVYM 285
Q HIG + Q V EL A I + + D
Sbjct: 407 ------QLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPE- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG-PALA 344
K I EA + + +L L DT +G+ +SGGQR+R+ + G P L
Sbjct: 441 KVI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL- 493
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI-----SLLQPAPETYNLFDDIILLS 399
+ +DE ++ LDS + GT V+ S L D I++L
Sbjct: 494 VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQ 545
Query: 400 NGQIVYQGPRELVL 413
+G+I GPRE VL
Sbjct: 546 DGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 53/266 (19%), Positives = 96/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----- 222
+ D I G + +++G SGK+T + L ++ + +G++ +G N+ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
V + + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
L MDE + LD + + K+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 39/232 (16%)
Query: 862 MKLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IT 915
+ L VS D +L G+S + G AL+G +G GK+TL+ +L T +
Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQ 394
Query: 916 GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEIDSE 968
G I ++G P I+ Y E + V + + L+SA LR P D
Sbjct: 395 GEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA 445
Query: 969 TRKMFIGEVMELVELKPLKQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMD 1023
+ EV++ V L+ L + GL G G LS +++RL IA L+ + ++ +D
Sbjct: 446 -----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
EPT GLDA ++ + +TV+ H+ + E FD + +M G
Sbjct: 501 EPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 32/162 (19%)
Query: 887 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNIKVSG---YPKKQETFA--RISGYCE 938
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 939 QNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV--------ELK-PLKQ 988
Q +PF +++Y+++ Y P I K + +++E E+K LK+
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
L L +++ I G+LT+++G GK++LLLA+ G++ + G+V ++ N E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI--SGGQRKRVTTG 335
D D+ L T +G+ RGI SGGQR+R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 888 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------IKVSGYPKKQETFARISGYC 937
TA+ G SGAGKT+L++ ++G R G I N + P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997
Q+ P V +L Y + + D ++ L+ ++PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDK---------IVALLGIEPL---LDRYP--G 127
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHNMDEFVPE 225
ILK V+ IK G + L+GP SGK+TL + G +V G + + G ++ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNIKVSGYPKKQET 929
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 930 F-ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
++ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------YEIYVGPLGRHSCHLVS 1093
G ++ H + + DE+ +M G EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 77/285 (27%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 220
LK+++ I ++T L+GP GK+TLL +L L +++ G+V ++G ++ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
R + Q N M++ + +A+ R G+ + E L E+ K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAAL-WDE 133
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
D L L G+SGGQ++R+ +
Sbjct: 134 VKD-------------------RLHDSAL--------------GLSGGQQQRLC-----I 155
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI---VNCFKQNIHINCGTAVI---SLLQPAPET 388
ALA L +DE ++ LD T +I + K+ T VI ++ Q A
Sbjct: 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAA--- 207
Query: 389 YNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ D +G++V GP E + F + PK K D++
Sbjct: 208 -RISDRTAFFYDGELVEYGPTE---QIFTN-----PKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 39/216 (18%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---- 922
VS + +L G++ RPG + A+MG +G+GK+TL LAGR+ G ++ G
Sbjct: 9 VSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEI 965
YP I G Q + + V R +
Sbjct: 69 ELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPL 115
Query: 966 DSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
D + + E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 116 DRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
SGLD A IV V + D R+ + H I
Sbjct: 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 13/173 (7%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIH 943
G + G +GAGKTTL+ VLAG +G I++ G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 944 SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003
++ E+L + L K G + +V L + +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 58/288 (20%)
Query: 154 YLHILPSRKQ--HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
YL I RK+ T LKD+S +K G LLGP GKTTLL +AG L+ + +G
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGT 60
Query: 212 VTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ G ++ P+ R + Q +TV + +A+ + +G+G E
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-------EVAE 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRK 330
+ A L ++GL + +SGGQ++
Sbjct: 114 RVA---------------------------ELLDLVGL-----PGSERKYPGQLSGGQQQ 141
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETY 389
RV + P L L +DE + LD+ + +Q + G I + E
Sbjct: 142 RVALARALATSPGL-LLLDEPLSALDARVREHLRTEIRQ-LQRRLGVTTIMVTHDQEEAL 199
Query: 390 NLFDDIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
++ D I+++++G I G P+E+ ++ P VADF+ EV
Sbjct: 200 SMADRIVVMNHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 175 IKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S GQ+KR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LD 355
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQ 927
+L+ + G + ++G SG+GK+TL+ + L +G I +KV+ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 928 ETFARI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
E R +G Q P +T E++++ LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1047 TGRTVVCTIHQ 1057
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 862 MKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 916
++L+ VS D L ++ + G ++G +G+GK+TL L G R G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEIDSETRKMF 973
+ +G K + ++ G QN + FV TV E L + L LPP E RK
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRV 117
Query: 974 IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
L E+ L++ P LS Q + + +A L P + DE TS LD +
Sbjct: 118 D---RALAEIG-LEKYRHRSP--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
V+ ++ + G+T+V H +++ D + +M RG
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 44/231 (19%)
Query: 178 GRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN 236
G +T ++GP SGK+TLL +AG SGRV NG ++ P +R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV + + G+ ++ E R+ + K + E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 297 VITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDS 356
+SGG+R+RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 357 STTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
+ ++++ +H V+ + + L ++ L NG+I QG
Sbjct: 162 ALRAEMLDLVLD-LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 9e-06
Identities = 66/277 (23%), Positives = 104/277 (37%), Gaps = 74/277 (26%)
Query: 157 ILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 217 HNMDEFVP------ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
++ R I QH N + TV E +A E+A
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAGVP 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRK 330
KA E V L+++GL D D +SGGQ++
Sbjct: 114 KAE-------------------IEERV--LELLELVGL---EDK--ADAYPAQLSGGQKQ 147
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPA 385
RV + ALA L DE ++ LD TT I+ + IN + +L
Sbjct: 148 RVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI-- 197
Query: 386 PETY------NLFDDIILLSNGQIVYQGPRELVLEFF 416
T+ + D + ++ G++V +G V E F
Sbjct: 198 --THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 57/247 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--V 223
+L D+S +K G + LGP +GKTT + + G + SG +T++G + +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R A I + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG-PA 342
L V+GL + ++G S G ++R+ ++G P
Sbjct: 110 ------------------VLDVVGLK-----DSAKKKVKGFSLGMKQRLGIALALLGNPD 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVIS--LLQPAPETYNLFDDIILLSN 400
L L +DE + GLD ++ ++ T +IS LL E + D I +++
Sbjct: 147 L-LILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLS---EIQKVADRIGIINK 201
Query: 401 GQIVYQG 407
G+++ +G
Sbjct: 202 GKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 220
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGHN+ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + Q N M++ E + + R +G+ ++K
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGI------------KDKQ-------- 119
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
V +A+ + A++ + D D+ + G+SGGQ++RV ++
Sbjct: 120 --VLDEAVEKSLKGASIWDEVK------DRLHDSAL------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 864 LQGVS---DDKLVL----LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGY 913
L+G+S D K V+ L +G F LT L+G SG GKTT++ ++AG +T G
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 914 ITGNIKVSGYPKKQETFARISGYCEQNDIHS--------PFVTVYESLLYSAWLRLPPEI 965
+ ++ P E +++ P +TV+E++ + ++ P
Sbjct: 72 MLDGQDITHVPA------------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA 119
Query: 966 DSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
+ R M E + +V+L+ Q LS Q++R+ IA +V P ++ +DE
Sbjct: 120 EITPRVM---EALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 1026 TSGLDAR 1032
S LD +
Sbjct: 172 LSALDYK 178
|
Length = 375 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 38/240 (15%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNIKVS--- 921
D K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 922 GYPKKQETFARISGYC------EQNDIHSPFVTVYESL-------------LYSA----- 957
GY ++ C E+ D + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 958 -WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
L EI E ++ +G ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 39/231 (16%)
Query: 863 KLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 916
K++ VS + + L VS G A++G +G+GK+T+ +L G + G
Sbjct: 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG---- 64
Query: 917 NIKVSGYPKKQETFARIS---GYCEQN-DIHSPFV--TVYESLLYSAWLRLPPEIDSETR 970
IK+ G +E I G QN D + F+ TV + + + + + +
Sbjct: 65 EIKIDGITISKENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKM 119
Query: 971 KMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
K I ++ + V ++ L + P LS Q++R+ IA L NP II DE TS L
Sbjct: 120 KDIIDDLAKKVGMEDYLDKE----P--QNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 1030 DARAAAIV---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRG 1075
D + + M +R T +T++ H D+ EA D++ + G
Sbjct: 174 DPKGKREIKKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFSEG 218
|
Length = 271 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 886 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSG---YPKKQETFA--RISGYC 937
+ ALMG SG GK+TL+ + L + G +++ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE--LKP------LKQS 989
Q P +T+Y+++ + ++L + S+ E+ E VE LK +K
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1050 TVVCTIHQPS 1059
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNIKVSGYPKKQE 928
V++ +S RPG L+G SG+GK+T L+ ++ + G I G P
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHN- 351
Query: 929 TFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEIDSETRKMFIGEVME 979
R ++ I F SL + LR+ P + + R+ + VME
Sbjct: 352 -LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V L P ++ P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 411 EVGLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 45/268 (16%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
ILK ++ I G + ++GP SGK+TL +AG + + G + + G ++ + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA--RREKAAGIKPDPDIDVY 284
A H+G LAF + G LA + K G P+ D +
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLEF 126
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM-MVGPAL 343
++ I + LK++G+D + + + G SGG++KR +M ++ L
Sbjct: 127 LEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSEL 172
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII-----LL 398
A+ +DE +GLD I + + +I+ Q L D I ++
Sbjct: 173 AI-LDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ------RLLDYIKPDYVHVM 225
Query: 399 SNGQIVYQGPRELVLEFFESMGFKCPKR 426
NG+I+ G EL E E G+ K+
Sbjct: 226 QNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK----QETF 930
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
Q P ++V E++ + LP M++ L EL+ L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGR-MAYNAMYLRAKNLLRELQ-LDADN 134
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
V P V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 135 VTRP-VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 887 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNIKVSGYPKKQETFARISGY 936
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 937 CEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP- 994
++ + PF ++Y+++ Y P+I K + E++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 995 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 24/200 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL---------AGRKTGGYIT------GNI 918
+L GVS G + +++G SG+GK+T + + + G I G +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 919 KVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEV 977
KV+ + + R++ + ++ S +TV E+++ + L + ++ R +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQEARERAVKYLAK 138
Query: 978 MELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+ + E K LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 139 VGIDERAQGKYP-------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191
Query: 1038 MRTVRNTVDTGRTVVCTIHQ 1057
+R ++ + G+T+V H+
Sbjct: 192 LRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 58/254 (22%)
Query: 846 SLTFDEV--VYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 904 VLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 963
+G I ++GY ET G + V++ P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF----------P 94
Query: 964 EIDSETRKMFIGEVMELVELKPL----------KQSLVGLPGVSGLSTE----------- 1002
E ++F V++ VE P +++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1003 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1061
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1062 IFEAFDELFLMKRG 1075
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 47/249 (18%)
Query: 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 905
++ FD V Y+ + Q + D V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHD--------VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 906 AG--RKTGGYIT-GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLLYSAWL 959
+ T G +T +I ++ K ++ + R + V+ ES L+
Sbjct: 54 NALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFE--- 100
Query: 960 RLPPEIDSETRKMFIGEV---MELVELKPLKQSLVGLPGVS---------GLSTEQRKRL 1007
D+ R++ G M L E+K L+ G S +S Q +++
Sbjct: 101 ------DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154
Query: 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF 1066
I L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++
Sbjct: 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYA 213
Query: 1067 DELFLMKRG 1075
DE+ +MK G
Sbjct: 214 DEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-05
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 23/183 (12%)
Query: 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET---FARIS-GYC 937
F +TA +G +GAGKTT + +L G +G + V G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997
Q++I +TV E +L+ A L+ E ++ + ++E L +
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 1054
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 1055 IHQ 1057
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N N ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
M+ A L +GL V D V + +S ++ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399
+ MDE ++ L + F I+N ++ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-----GTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 NGQIVYQG 407
+G V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-05
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL+ VS + G +T +LG GKTTLL L G L SG + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 68/259 (26%)
Query: 171 VSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG + + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+SQ M V ++ LT ++
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI---SGG--QRKRVTTGEMMVGPA 342
A+ + +V + D++ R + SGG QR R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394
+ L +DE LD + ++++ Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-----GIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSNGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 841 PFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 900
P EPH +V+ + + V + ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 901 LMDVLAGRKTGGYITGNIKVSGYP-----KKQETFARISGYCEQNDIHS--PFVTVYESL 953
L+ L G G + GN+ ++G P Q A I+ E H P + V +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 954 LYSAWLRLP--PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAV 1011
S ID+ IG ++ +++K L + LS +++ +A
Sbjct: 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL----PIGRLSGGNQQKAVLAK 416
Query: 1012 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 54/256 (21%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
P+R L ++ ++PG L+GP +GK+TL L D SGR+ +G +
Sbjct: 348 PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVD 403
Query: 219 MDEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + P R + D + +V E + + +
Sbjct: 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------------------R 438
Query: 277 PDP-DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
PD D +V A A E + L DT +G+ + +SGGQR+R+
Sbjct: 439 PDATDEEVEAAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIA 488
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNL 391
++ A L +DE ++ LD+ + Q+V + + T +I + + A
Sbjct: 489 RAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA------ 541
Query: 392 FDDIILLSNGQIVYQG 407
D I+++ G+IV QG
Sbjct: 542 -DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 28/204 (13%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG--------- 922
L +L+G++ + G AL+G SG+GK+T++ +L + G I+V G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 923 ----YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFI 974
P ++ ++ G Q+ P TV +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 975 GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1035 AIVMRTVRN-TVDTGRTVVCTIHQ 1057
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 852 VVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 912 GYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 963
G I++ G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 964 EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1075
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNIKVSGYPKKQETF 930
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 931 ARISGYCEQNDIHSPFVTVYESL----LYSAWLRLPPEI----DSETRKMFIGEVMELVE 982
R I F Y SL L P I + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142
Query: 983 LKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 143 LRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGNIKV 920
+L +L VS G AL G SGAGK+TL+ L +GR + G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 921 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEIDSETRKM 972
S +++ GY Q P V+ V E LL P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
EL+ + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 33/170 (19%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGY 923
VS + +L+ VS +PG + L+G +GAGK+TL+ V+ G G I
Sbjct: 11 SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------- 61
Query: 924 PKKQETFARISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL 980
K+ RI GY Q D P L + +LRL P T+K I ++
Sbjct: 62 --KRNGKLRI-GYVPQKLYLDTTLP-------LTVNRFLRLRP----GTKKEDILPALKR 107
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V+ L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 108 VQ----AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 55/206 (26%)
Query: 860 QQMKLQGVSDDKLVLLNGVS---GAFRP----------GVLTALMGVSGAGKTTLM---- 902
+ +S + ++ L V+ G F G +TAL+G SG GK+T++
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60
Query: 903 ---DVLAGRKTGGYITGNIKVSG---YPKK---QETFARISGYCEQNDIHSPF-VTVYES 952
D++ G + G + G Y + E RI +Q + PF ++YE+
Sbjct: 61 RMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN---PFPKSIYEN 113
Query: 953 LLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV--------GLPGVSGLSTEQR 1004
+ + A I+ + G++ ELVE + L+++ V G S LS Q+
Sbjct: 114 IAFGA------RING-----YTGDMDELVE-RSLRKAAVWDECKDKLNESGYS-LSGGQQ 160
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLD 1030
+RL IA + P +I MDEP S LD
Sbjct: 161 QRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 16/199 (8%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG------ 922
+DK +L + ++ + +MG SG+GK+TL+ VL R Y IKV G
Sbjct: 21 NDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFG 77
Query: 923 ---YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
+ + G Q P +++Y+++ Y L+ + K + E +
Sbjct: 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLR 135
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
V L + P S LS Q++RLTIA L P ++ MDEPTS +D + + +
Sbjct: 136 KVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194
Query: 1040 TVRNTVDTGRTVVCTIHQP 1058
+ + +V H P
Sbjct: 195 LI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 49/202 (24%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
IL ++S ++ G + GP GK+TLL +A L S SG + + G ++ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-- 112
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGEMMVGPA 342
A+ L L D+++ + I +SGG+++R+ + P
Sbjct: 113 ---ALD------------LLARFALP---DSIL-TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
+ L +DEI++ LD S I
Sbjct: 154 I-LLLDEITSALDESNKRNIEE 174
|
Length = 223 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-05
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 34/214 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL----LDGVPLVQ----- 547
Query: 933 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
+ + +H V E +L+S +R I E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 992 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1043 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 39/241 (16%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSGYPKKQETFARIS 934
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 935 GYCEQNDIHSPFVTVYESLLYS-AWLRLPP-EIDSETRKMF-IGEVMELVELKPLKQSLV 991
Q+ P +TV +++ + +LP EI S +M + + E + KP +
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ---- 149
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1050
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T
Sbjct: 150 -------LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202
Query: 1051 VVCTIHQPSIDIFEAFD---ELFLMKRGGY-------EIYVGPLGRHSCHL---VSYFEA 1097
V H D EA + +M RG + EIY P R+S V+ FE
Sbjct: 203 CVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEG 258
Query: 1098 I 1098
+
Sbjct: 259 V 259
|
Length = 377 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 48/204 (23%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
+L +S + G AL+G SG+GK+TL+ +TG++K
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLL---------QLLTGDLKPQ----------- 55
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
G + + V+ E L S L +F + + G
Sbjct: 56 -QGEITLDGVP---VSDLEKALSSLISVLNQRP-----YLFDTTLRNNL----------G 96
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T++
Sbjct: 97 RR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLI 151
Query: 1053 -CTIHQPSIDIFEAFDELFLMKRG 1075
T H I E D++ ++ G
Sbjct: 152 WITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNIKVSG---YPKKQE--T 929
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 930 FARISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEIDSETRKMFIGEVMELVELKP-L 986
R G Q P +++Y++++ Y R+ E + + V E+K L
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
K + + L G Q++RL IA + P +I MDEP S LD
Sbjct: 143 KSNAMELSG------GQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI 942
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 943 HSPFVTVYESLLYSAWL-----RLPPEIDSETRKM--------FIGEVMELVELKPLKQS 989
+ F + E + +P + + ++ + E+++ +EL+ +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1050 TVVCTIHQPSI 1060
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 30/158 (18%)
Query: 892 GVSGAGKTTLMDVLAGRK---TGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948
G SG GK+TL+ ++AG + +G G +++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 949 VYESLLYSAWLRLP----PEIDSETRKMFIGEVMELVEL---KPLKQSLVGLPGVSGLST 1001
V E++ S L+L EI+ R + EV++L L KP LS
Sbjct: 92 VAENM--SFGLKLAGAKKEEINQ--RVNQVAEVLQLAHLLDRKP-----------KALSG 136
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
QR+R+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
++ D+S I G LLGP +GK+T+ L G + G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ T RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----------REIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
L+ L+ AD V +SGG ++R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 221
+ L+IL V ++K G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQ 76
Query: 222 FVPERTAAYISQH 234
E A ++H
Sbjct: 77 MDEEARAKLRAKH 89
|
Length = 228 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 323 GISGGQRKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL 381
G SGG++KR ++++ P LA+ DE +GLD + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYNLFDDII-----LLSNGQIVYQGPRELVLEFFE 417
Q L D I +L +G+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHNMDEFVP 224
L D+ +K G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE + GLD +++ F ++IH G V+ + + + D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLF-ESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 49/160 (30%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
++GVS + + G L+G SG GK+TL ++ G T G I + K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-------FEGKDITKLS 81
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
E R+ V+EL+E L + +
Sbjct: 82 ---------------------------------KEERRE----RVLELLEKVGLPEEFLY 104
Query: 993 -LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
P LS QR+R+ IA L NP +I DEP S LD
Sbjct: 105 RYP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 36/201 (17%)
Query: 856 VDMPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVL 905
+ P +M+ +G+S D L + +S F +TAL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQAL-HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 906 AGRKTGGYIT-GNIKVSGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPP 963
G + G I + R G Q +PF +++E++ Y LR
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP--NPFPKSIFENVAYG--LR--- 112
Query: 964 EIDSETRKMFIGEVMELV--------ELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
++ K ++ E +E E+K L +S +GL G Q++RL IA L
Sbjct: 113 -VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG------GQQQRLCIARALA 165
Query: 1015 ANPSIIFMDEPTSGLDARAAA 1035
P ++ MDEP S LD A
Sbjct: 166 VEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 46/217 (21%), Positives = 72/217 (33%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
+ +S + G + GP SGKTTLL LAG S ++GRV NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R Y+ ++V E L F + ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI 379
+DE +T LD + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D L ++G+S R G L+G SG+GK+TL G I G I+ G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 928 ETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEIDSETRKMFIGEV 977
+ + + + F Y SL + LR+ P +E + I E
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI-EA 409
Query: 978 MELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+E V L P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LEEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 49/250 (19%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL---DSSLKVSGRVTYNGHN---MD 220
ILKD++ I + ++GP SGK+TLL L + DS +KV G+V Y G + +D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + Q N +++ + +A+ + G+ + E+ + + G+
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK--- 141
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
+VY + + Q +SGGQ++R+T +
Sbjct: 142 -EVYDRLNSPASQ------------------------------LSGGQQQRLTIARALAL 170
Query: 341 PALALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
L MDE ++ +D S +++ K I A++ + + + D +
Sbjct: 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI------AIVIVSHNPQQVARVADYVAF 224
Query: 398 LSNGQIVYQG 407
L NG++V G
Sbjct: 225 LYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNIKVSGYPKKQET 929
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ + +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 930 FARISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLPPEIDSETRKMFIGEVME 979
A I IH P +T+ E++ + + R ID +KM+ E +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGR----ID--WKKMY-AEADK 124
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
L L L V LS +++ + IA L +I MDEPT L + R
Sbjct: 125 L--LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 1040 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077
+R GR +V H+ +IFE D++ + + G +
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQF 219
|
Length = 501 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 129 EAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQH-LTILKDVSGIIKPGRLTLLLGPP 187
+ SK + + S+ + RK LKD+S I G ++G
Sbjct: 5 KVSNVSKKFRIYHEKSYSLKKRLKGL--AKGGRKVAEFWALKDISFEIYKGERVGIIGHN 62
Query: 188 ASGKTTLLLALAG--KLDS-SLKVSGRVTY 214
+GK+TLL +AG K S +KV+G+V
Sbjct: 63 GAGKSTLLKLIAGIYKPTSGKVKVTGKVAP 92
|
Length = 249 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 26/217 (11%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK--KQ 927
D +L GVS +TA++G SG GK+T + L + ++V G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 928 ETFAR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEIDSETRKMF-IG 975
+ R ++ Q + P ++VY+++ Y + R EID
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDA 134
Query: 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
++ + ++ K K +L LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 135 DLWDEIKHKIHKSAL-------DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
Query: 1036 IVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1070
V +++ + + T+V H + F F
Sbjct: 188 KVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-DEFVP-- 224
L +V+ I+ G L+G SGK+TL+ L G L + SG++ +G ++ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --ERTAAYISQHDNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
+ ++GLD D+ +SGGQ++RV ++
Sbjct: 127 ---------------------MNIVGLDY---EDYKDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
L +DE + GLD +I+N K +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1057 QPSI 1060
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 25/176 (14%), Positives = 66/176 (37%), Gaps = 8/176 (4%)
Query: 1216 KTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERT--VFYREKAAGMYSGIPWALA 1273
+ + + L + + + E+ + R +G+ S + + L
Sbjct: 86 LFNPNSGYAYYLLGLL--LFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLG 142
Query: 1274 QVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPN 1333
+++ ++ +Q L+ +++ + + L + G L ++ N
Sbjct: 143 KILGDLLVGLIQLLIILLLLFG---LGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKN 199
Query: 1334 HHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDM 1389
A +V ++ + + F G + P P +P + +W + P + GL+ +GD+
Sbjct: 200 SEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 70/264 (26%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ IK G +T +LG +GK+TL L G L S SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
Y + G M +RE+ VG ++ DPD ++
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTV---VGDEMIR-GI-----------SGGQRKRV 332
A+V D + L + D V V + + R GI S GQ+KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
++V L +DE + GLD +I+ + T +I+ + L+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--IDIVPLY 208
Query: 393 -DDIILLSNGQIVYQG-PRELVLE 414
D++ ++ G+++ QG P+E+ E
Sbjct: 209 CDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPASGKTTLLLALAG--KLDSS-LKVSGRVTYNGHNMDEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG + D + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+++RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
++I+ + + +H G ++ + E L D +++L +G++ GP V
Sbjct: 165 PRKYEILP-YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-05
Identities = 63/277 (22%), Positives = 103/277 (37%), Gaps = 61/277 (22%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 220
R Q +LK ++ +T L+G GK+TL + L+G L G V + G +D
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLD 66
Query: 221 E------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ ++ A + I + +AFS R GV E+ RR
Sbjct: 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----- 116
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTT 334
+D + + + + I+ +S GQ+KRV
Sbjct: 117 ------VDEALTLVDAQH-----------------------FRHQPIQCLSHGQKKRVAI 147
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCFK----QNIHINCGTAVISLLQPAPETYN 390
+V A L +DE + GLD + Q++ + Q H+ + I L+ Y
Sbjct: 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YE 201
Query: 391 LFDDIILLSNGQIVYQG-PRELVL--EFFESMGFKCP 424
+ D + +L GQI+ G P E+ E E G P
Sbjct: 202 ISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG ++RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
DE LD+ T + Q I V+ + E L D +++L+NG
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
Q +LK++S +K G LLG SGK+TLL L G L G +T +G
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---YPKKQETFA 931
L ++ + +TA++G SG GK+T + L + N+K++G Y
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTL---NLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 932 RISGYCEQNDIH------SPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV--- 981
++ + +I +PF ++++++ Y P I K + E++E
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKD 138
Query: 982 -----ELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E+K L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 139 VALWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 49/200 (24%), Positives = 71/200 (35%), Gaps = 62/200 (31%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
++ +S + G LLGP +GK+T+ + G +G++T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTR-----YEMLTELARREKAAGI 275
+ Q DN E TVRE L R G+ TR L E AR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK--- 165
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
AD V D +SGG ++R+T
Sbjct: 166 ------------------------------------ADARVSD-----LSGGMKRRLTLA 184
Query: 336 EMMVGPALALFMDEISTGLD 355
++ L +DE +TGLD
Sbjct: 185 RALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 55/264 (20%)
Query: 156 HILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
L KQ +L +VS I+ G LLG GK+TL L G L+ + G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFR 71
Query: 216 GHNMDEFVPE------RTAAYISQHDNHIG----EMTVRETLAFSARCQGVGTRYEMLTE 265
G ++ + + R + Q + MTVR+ + R L E
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDE 123
Query: 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325
++ + A + L ++GL + D++ R +S
Sbjct: 124 SEQKARIAEL---------------------------LDMVGL----RSEDADKLPRQLS 152
Query: 326 GGQRKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQP 384
GGQ +R+ + V P L + +DE + LD I+ ++ + GTA + +
Sbjct: 153 GGQLQRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHD 210
Query: 385 APETYNLFDDIILLSNGQIVYQGP 408
+ + ++ GQIV +
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 50/284 (17%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTL---LLALAGKLDSSLKVSGRVTYNGH 217
R LT+L ++ + G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 218 NMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+P R + + H+ +M +G ++ + +
Sbjct: 67 -----MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTE 110
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE- 336
P V + +A E + L ++GL AD D M +SGGQ++RV
Sbjct: 111 AP---VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARA 160
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPE---TYNLFD 393
+ + P + LF DE+++ LD +++N ++ +++L E D
Sbjct: 161 LAMRPKVMLF-DEVTSALDPELVGEVLNVIRR----LASEHDLTMLLVTHEMGFAREFAD 215
Query: 394 DIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ G+IV QG P E+ F+ PK + +FL +V
Sbjct: 216 RVCFFDKGRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 59/255 (23%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL---DSSLKVSGR-VTYNGHNMDEFV 223
LK ++ + G + LLGP +GK+TL L G L + + G + Y+ ++ E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGGQ+KRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCF----KQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
+ + +DE ++GLD QI+ K+ I I T + L P Y D + +
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYV 209
Query: 398 LSNGQIVYQG-PREL 411
+S+G+I+ +G P+E+
Sbjct: 210 MSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 169 KDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHNMDEF-VP 224
+DVS + PG + ++G SGK+TLL LAG+L G TY +G ++ + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 225 E-------RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
E RT ++ Q+ M V R +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE 336
Y AT D+ +V ++ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395
+V P L +FMDE + GLD S ++++ + + + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSNGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 59/279 (21%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG--KLDS-SLKVSGRVTYNGHNMD 220
+LK +S ++ G + +++GP SGK+TLL L G + DS S+ V G + ++
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 221 EFVPERTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ R + Q N +TV E TLA ++ + KA +
Sbjct: 74 KL--RRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLSKAEARE-- 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-M 337
KA+ L+ +GL AD D +SGGQ++RV +
Sbjct: 116 -------KALE------------LLEKVGL---AD--KADAYPAQLSGGQQQRVAIARAL 151
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397
+ P + LF DE ++ LD ++++ K G +I + + D +I
Sbjct: 152 AMDPKVMLF-DEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIF 208
Query: 398 LSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ G+I+ +GP E EFF++ PK + FL ++
Sbjct: 209 MDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 220
L D++ I ++T L+GP GK+T L L L S++K+ G V +G N+ D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + E+ + K A + +
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
D+ A+ +SGGQ++R+ +
Sbjct: 139 DDLKKSAL----------------------------------KLSGGQQQRLCIARTIAV 164
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 165 KPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI 942
G LT ++G G GK++L+ + G + G + + K P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 943 HSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL---VELKPL-KQSLVGLPG 995
P++ TV E++ + + + + K + L ++L P Q+ +G G
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVT-DACSLQPDIDLLPFGDQTEIGERG 138
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVC 1053
++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 139 IN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197
Query: 1054 TIHQ 1057
H+
Sbjct: 198 VTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---YPKKQETF 930
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 931 ARISGYCE-QNDIHSPFVT-------VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
A + + Q I P V+ Y S L PE+D I E ++LV
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKLVG 138
Query: 983 LKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ P S + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 139 MDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1043 NTVDTGRTVVCTIH 1056
+ + +++ H
Sbjct: 196 KLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-04
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 964 EIDSETRKMFIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
E+ ++K+ I + V P K ++LVG S LS Q++R++IA ++ NP I+ +
Sbjct: 548 EVVDVSKKVLI---HDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILIL 603
Query: 1023 DEPTSGLDARAAAIVMRTVRN 1043
DE TS LD ++ +V +T+ N
Sbjct: 604 DEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 48/170 (28%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNIKVSGYPKKQETFA 931
+TAL+G SG GK+T + D++ G + G+I + V KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 932 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL---------- 980
G Q +PF ++++++ Y LR+ E D + FI E +E
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDED----FIEERVEESLKAAALWDE 135
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V+ K K +L GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 136 VKDKLDKSAL-------GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 996 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1052 VCTIHQPSIDIFEAFDELFLMKR 1074
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 41/207 (19%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI-- 942
G + L+G SG GKTT++ ++AG + G I + G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 943 --HS----PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996
S P +++ E++ Y L++ + E RK + E +ELV+L + V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1051
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1052 VCTIHQPSIDIFEAF---DELFLMKRG 1075
+ H S EAF D + +M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 37/204 (18%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIH 943
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 944 SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003
E + + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1004 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1055
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1056 HQPSI----DIFEAFDELFLMKRG 1075
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 40/185 (21%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSG---YP 924
L +S +TA +G SG GK+TL+ D++ + I G I++ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 925 KKQE--TFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
KK + R G Q +PF ++YE+++Y + + + E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG------LRLQGINNRRVLDEAVERS 148
Query: 982 --------ELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
E+K L ++ GL G Q++RL IA + P ++ +DEPTS LD
Sbjct: 149 LRGAALWDEVKDRLHENAFGLSG------GQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 1033 AAAIV 1037
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 25/185 (13%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925
S +L +S F G + ++G SGAGK+TL+ ++ + G+I + G
Sbjct: 10 SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDI 67
Query: 926 KQ----ETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
K + +I +Q P + TV +++ Y L+ +D E +G
Sbjct: 68 KTIDVIDLRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK 122
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
E V LS + +R++IA L NP ++ +DEPTS LD + I+
Sbjct: 123 EYATRD-----------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 1039 RTVRN 1043
+
Sbjct: 172 ELIVK 176
|
Length = 241 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEFV 223
ILKD+S + G + ++GP +GK+TL+ + +D + G + +G +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T ++ +SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L +DE ++ LD ++T +I+ + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1057
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1058 PSIDIFEAF--DELFLMKRG 1075
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQ 927
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I + K ++ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-L 986
++ E + S +TV E+L + R F + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1047 TGRTVVCTI 1055
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 48/202 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + + SG + + G ++ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGG+++R++ +
Sbjct: 115 ---AIFLDD-----------LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
L +DEI++ LD S VN
Sbjct: 157 KVLLLDEITSALDESNK-HNVN 177
|
Length = 225 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 858 MPQQMKLQGVSDD--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 915
P + + +S + +L G+ G + AL+G +GAGK+TLM ++AG +
Sbjct: 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--S 65
Query: 916 GNIKVSGYPKKQETFARISGY----CEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
G +++ G P + T A+ Q + P ++V E++L+ LP S +
Sbjct: 66 GTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK- 120
Query: 972 MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ +L L L L L R+ + I L+ + I+ +DEPT+ L
Sbjct: 121 -----MKQL--LAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 175 IKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE--RTAAYIS 232
++PG LLG +GKTT L G D+++ SG T G ++ + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 QEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG +++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/162 (19%), Positives = 47/162 (29%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L SG + +G + + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDE 349
L D + SGGQ++RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 31/202 (15%)
Query: 858 MPQQMKLQGVS-DDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 910
MPQQ++L+ ++ L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 911 GGYITGN-IKVSGYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 964
G + + V+ + A I S + N +H+ E+ L
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALGKPADDAT 117
Query: 965 IDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
+ + + + +++L P + +S +R+ IA+ L+ I DE
Sbjct: 118 LTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFIIADE 166
Query: 1025 PTSGLDARAAA----IVMRTVR 1042
PT+ LD A A ++ V+
Sbjct: 167 PTTDLDVVAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 887 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKVSGYPKKQETFA----RISGYCEQND 941
+TAL+G SG GK+T + I G +++ G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 942 IHSPFV-TVYESLLYSAWLR-LPPEIDSETRKMFIGEVMELVEL-----KPLKQSLVGLP 994
+ FV ++YE++ Y+ L + D E + + + ++ V L LKQ+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 3/197 (1%)
Query: 1188 NPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQP 1247
A + LL G G L+ + + ++ + + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1248 IVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAM---MEFDWTAA 1304
++ R + + S + + +PY+ V SL+ ++ + + + +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1305 KFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVW 1364
+ + + L +L+ A+ V L SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1365 WRWYYWANPIAWTLYGL 1381
+ + NP+ + + L
Sbjct: 228 LQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIKVSGYPKKQE--- 928
L GVS +TAL+G SG GK+T + L R I G++++ G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 929 --TFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIG-----EVMEL 980
+ G Q+ +PF ++ E++ Y R +I++ +G EL
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGP--RKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 981 VELKPLKQSLVGLPGVS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
VE + L+Q+ + V+ GLS Q++RL IA L +P +I MDEP S LD
Sbjct: 177 VE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 1033 AAA 1035
A +
Sbjct: 235 ATS 237
|
Length = 305 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 58/261 (22%), Positives = 89/261 (34%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG SG + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGG--QRKRVTTGEMMVG 340
K + L LD D + +SGG QR R+ + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
P L +DE LD S ++++ Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-----GLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSNGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 68/260 (26%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L +S I G ++G +GK+TLL A+AG L + SG++ +G ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDP 279
+ A +++ E+T+ E LA + R + G +
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR------------ 124
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
+ + +A G LGL+ +G +SGGQR+ ++ +
Sbjct: 125 --SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATL 164
Query: 340 GPALALFMDEISTGLDSST-------TFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
P L +DE + LD T T +IV K T ++ T+N+
Sbjct: 165 HPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL-------TTLMV-------THNME 210
Query: 393 DDI------ILLSNGQIVYQ 406
D + I+L +G+IV
Sbjct: 211 DALDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHN---MDE 221
+L V+ I +T L+GP SGK+TLL +L +VSG V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
R + Q N I +++ E +A + L L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
++ + Q + + D LD A +SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGK---------LSGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
L DE + LD T +I + F + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG-----YPKKQETFARISGYCEQ 939
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 940 NDIHSPFVTVYESL---------LYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
N +TV E + L++ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 47/246 (19%)
Query: 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA--- 344
+ E EA +GL + V + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEE--VLKKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L DE +T LD +++ ++ + GT ++ + + D++ ++ +G+
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
Query: 403 IVYQGP 408
IV +G
Sbjct: 204 IVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGYPKKQETFA 931
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ + KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 932 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP--L 986
R+ G Q + F E + + L +K + E+++LV+L +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLVQLPEDYV 144
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTV 1045
K+S L G Q++R+ +A + + + + +DEPT GLD + + R
Sbjct: 145 KRSPFELSG------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK 198
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + ++ H + DE+ +M G
Sbjct: 199 EYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 49/261 (18%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN-GHNMDEF 222
L L +VS I G ++G SGKTT + L L L +G + + ++
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREKAAGIKP 277
+ + I + ++ + VG Y++ + EK
Sbjct: 76 KTKEKEKVLE--KLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTI--EK------ 125
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR---GISGGQRKRVT- 333
DI ++ +EA Y++++GLD + R +SGGQ++RV
Sbjct: 126 --DIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVAL 176
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393
G + + P L DE + GLD +I+ F N++ T ++ T++L D
Sbjct: 177 AGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLNKQGKTIILV-------THDL-D 226
Query: 394 DI-------ILLSNGQIVYQG 407
++ I +G+I+ G
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 42/212 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNIKVSGYPKKQETF 930
L VS G L+G +GAGK+TL+ +LAG I +G + V G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWL--RLPPEIDSETRKMFIGEVMELVEL----- 983
R+S +P +T E++ + L EID I E++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFID 137
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P+K S+ + RL A+ P I+ +DE + DA R +R
Sbjct: 138 LPVKT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE 187
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ G+TV+ H PS I D ++++G
Sbjct: 188 LLKQGKTVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKVSGYPKKQETFA 931
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I ++ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 932 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R G Q+ H + TVY+++ + L + + R+ + ++ L K
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNV--AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+ L G +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 134 FPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1049 RTVVCTIH 1056
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 47/194 (24%), Positives = 72/194 (37%), Gaps = 60/194 (30%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L +SG V G +
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV-GETVK---- 386
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y QH + + T E L+E PD D
Sbjct: 387 ---IGYFDQHRDELDPDK---------------TVLEELSEGF-----------PDGD-- 415
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM---IRGISGGQRKRVTTGEMMVGP 341
E V YL G G++ + +SGG++ R+ ++++ P
Sbjct: 416 ---------EQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 342 ALALFMDEISTGLD 355
L +DE + LD
Sbjct: 458 PNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+
Sbjct: 467 DTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMK 524
Query: 1048 GRTVVCTIHQ 1057
GRT + H+
Sbjct: 525 GRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 28/213 (13%), Positives = 72/213 (33%), Gaps = 8/213 (3%)
Query: 504 LLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFF 563
L+ + ++L+ + + I L + +++ S A +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYL-IIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPG 93
Query: 564 ATVMVMFNGFSEISMTIAKLPVFYKQRDFRF---FPPWAYAIPSWILKIPISFLEVAVWV 620
+M + + + + + + + ++ L + +
Sbjct: 94 VILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVL 153
Query: 621 FLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAAT--GRNMVVANTFGSFALLVL 678
+ +++G+ LLL +A+ L+ +T + A+ G+ +L L
Sbjct: 154 LVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPL 211
Query: 679 FSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAI 711
L G E + W + + +PL+YA +A+
Sbjct: 212 GFLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 989 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1043 NTVDTGRTVVCTIH 1056
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP-KKQ-E 928
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 929 TFARISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
+ + Y Q I +T E+L + RL D E + E + V
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----LWEALAQV------ 117
Query: 988 QSLVG---LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L G +P V LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 118 -GLAGFEDVP-VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
Query: 1045 VDTGRTVVCTIHQP 1058
+ G V+ T HQ
Sbjct: 176 AEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 36/163 (22%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT---GNIKVSGYPKKQETFARISGY 936
+TA +G SG GK+T++ D++ G + G +T N+ E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV-DPVEVRRRI-GM 95
Query: 937 CEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV---- 991
Q +PF ++Y+++ Y I+ + G++ ELVE + L+Q+ +
Sbjct: 96 VFQKP--NPFPKSIYDNIAYG------ARING-----YKGDMDELVE-RSLRQAALWDEV 141
Query: 992 ----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 142 KDKLKQSGLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-04
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
+L+DVS + G+LT++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF 249
+ AY+ Q I TVR + F
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILF 743
|
Length = 1560 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-04
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 50/238 (21%)
Query: 175 IKPGRLTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFVPE---RTAA 229
+ G+ L+GP +GKT+LL AL G L SLK+ NG + E PE + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ Q + + T+R+ + PD + +A+
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL- 459
Query: 290 TEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDE 349
+ A V L GLD T +GD+ G+S GQ +R+ ++ P L +DE
Sbjct: 460 ---ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 350 ISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
+ LD+ + ++ V L+ + +D I ++ +GQIV QG
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1059 SIDIF 1063
S+ F
Sbjct: 149 SLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---------YPK 925
+ G+S +TA++G SG GK+T + L + G +KV G Y
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 926 KQET--FARISGYCEQNDIHSPF-VTVYESLLYSAWL--RLPP-EIDSETRKMFIGEVM- 978
+ R G Q +PF +++YE++ Y + +LP ++D G +
Sbjct: 80 RININRLRRQIGMVFQRP--NPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALW 137
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+ V+ K K +L GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 138 QEVKDKLNKSAL-------GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGQRKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINC 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ K +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYNLFDDIILLSNGQ 402
G V+ + E L D +++L +G+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 149 EGFLNYLHILPSRK-QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLK 207
G + L L RK + + LK +S I+ G + +GP +GKTT L L+G L +
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 208 VSGRVTYNG----HNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GT 258
SG V G +F+ R Q ++ V ++ A +
Sbjct: 75 -SGEVRVAGLVPWKRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK 132
Query: 259 RYEMLTEL 266
R + L+EL
Sbjct: 133 RLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 59/259 (22%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HNMDEF 222
T+L V ++ G L L+GP +GKTTLL A+ G L + +G V G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + E VR+ + R + + D
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEMG--------RTPHRSRFDTWTET-------DRA 118
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+A+ G D + +SGG+R+RV ++ A
Sbjct: 119 AVERAMERTGVAQFA--------------------DRPVTSLSGGERQRV-----LLARA 153
Query: 343 LA-----LFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394
LA L +DE + LD T ++V + G ++ + D+
Sbjct: 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-----GKTAVAAIHDLDLAARYCDE 208
Query: 395 IILLSNGQIVYQGPRELVL 413
++LL++G++ GP VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 175 IKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM----DEFVPERTAAY 230
+ G L + GP +GKT+LL LAG +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ H I E+T E L F R G G + LA+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 72/268 (26%)
Query: 152 LNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
+ +L+ HL + D++ ++ G +LGP +GK+TLL +AG L + SG
Sbjct: 7 ITWLY------HHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGS 55
Query: 212 VTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+T NG + P R + + Q +N +TV + + G+G
Sbjct: 56 LTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI-------GLGL------------ 96
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRK 330
G+K + + AIA + +G++ + G +SGGQR+
Sbjct: 97 -NPGLKLNAAQREKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQ 136
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL-------- 382
RV +V L +DE + LD + +++ Q C ++LL
Sbjct: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ----VCQERQLTLLMVSHSLED 192
Query: 383 --QPAPETYNLFDDIILLSNGQIVYQGP 408
+ AP + +++++G+I + GP
Sbjct: 193 AARIAPRS-------LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 29/229 (12%)
Query: 839 VLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
VL T EVV V+ L + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 899 TTLMDVLAG-RKTGGYITGNIKVSGYPKKQETFARIS-----GYCEQNDIH---SPFVTV 949
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 950 YESLLYSAWLRLPPEIDSETRKMFI--GEVMELVELKPLKQSLVGLPG----VSGLSTEQ 1003
E+L+ P +R F+ + + + +++ V P LS
Sbjct: 355 AENLVLG-RHDKKPF----SRGGFLDRRAIRKFAR-ELIEEFDVRAPSPDAPARSLSGGN 408
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-04
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 879 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKVSGYPKKQETFARISG 935
G G V+ + G +G GKTT +LAG G + +K+S Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 936 YCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPG 995
TV + LL S ++ S + E+++ ++L+ L V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNIKVSGYPKKQETFARISGY 936
G+ + ++G +G GKTT + +LAG G VS Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y-KPQYIKADYEG- 76
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996
TV + LL S D T F E+ + ++++ + V
Sbjct: 77 -----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 63/253 (24%), Positives = 95/253 (37%), Gaps = 54/253 (21%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG---KLDSSLKVSGRVTYNGHNMDEFVP 224
LK +S I G T LLGP +GK+TLLL L G +KV GR N N V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKW-VR 78
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ D+ + TV + +AF G+ E+ RR + A +K V
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA-LKA-----VR 127
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT-TGEMMVGPAL 343
M + Y+L S GQ+KRV G + + P +
Sbjct: 128 MWDFRDK-------PPYHL---------------------SYGQKKRVAIAGVLAMDPDV 159
Query: 344 ALFMDEISTGLDSS---TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
+ +DE LD T +I++ G VI D +I+L
Sbjct: 160 -IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVATHDVDLAAEWADQVIVLKE 213
Query: 401 GQIVYQGPRELVL 413
G+++ +G + L+
Sbjct: 214 GRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 54/185 (29%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIKVSGYPKKQETFA 931
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 932 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EIDSETRKMFIGE 976
DI+ + VYE + + R P E K + E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 977 VMELVELKPLKQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
++E LKQ+ + L LS Q++RL IA + P I+ MDEP
Sbjct: 139 IVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEP 190
Query: 1026 TSGLD 1030
S LD
Sbjct: 191 ASALD 195
|
Length = 267 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 1059 SIDIFEAFDELFLMKRG 1075
D+ D ++++++G
Sbjct: 206 D-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-04
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 19/190 (10%)
Query: 876 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKV---SGYPKKQET 929
+S + G + G+ G+G+T LM+ L G R G + S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 930 FARISGYCEQNDIHSPF-----VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
A I+ N F + + SL + + EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 985 --PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1043 NTVDTGRTVV 1052
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNM-----D 220
+K+V I G++T L+GP GK+T+L +L L + GRV ++G ++ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
R + Q N + ++ E +AF AR G + L E + R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 51/215 (23%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD- 220
IL D++ I+ G++ ++G SGK+TLL + G L+ SG+V NG
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETPP 64
Query: 221 -------EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+F E Y+ Q+ I TV E L +L
Sbjct: 65 LNSKKASKFRRE-KLGYLFQNFALIENETVEENL-----------------DLGL----- 101
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVT 333
Y K E +E L+ +GL++ I +SGG+++RV
Sbjct: 102 ---------KYKKLSKKEKREKKK---EALEKVGLNLKLKQ-----KIYELSGGEQQRVA 144
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
++ P + DE + LD ++++ +
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+L++VS I+PG ++GP SGK+TL + G L SGRV +G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDG 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 57/247 (23%), Positives = 90/247 (36%), Gaps = 59/247 (23%)
Query: 177 PGR-LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM-----DEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG GR+ NG + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + K+ D + +
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG------------------MWKSMR----AQFD---QLV 113
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE-MMVGPALALFM 347
A G E + D +SGG+++RV G ++ P L L M
Sbjct: 114 ALLGIEHLL--------------------DRYPGTLSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
DE LD +I+ + + + ++ + E L D +++L NG++ G
Sbjct: 153 DEPLASLDLPRKREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 408 PRELVLE 414
P E V
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 69/258 (26%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
++++ S ++PG+ L+G SGK+T+ +AG SG + ++G +E E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIG--EMTVRE-------TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
A ++ D I E TVR+ T+ + +L R K A I
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDA--------------DLVRACKDAAIH- 595
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
DV G +A + E +SGGQR+R+
Sbjct: 596 ----DVITSR--PGGYDAELA--------------------EGGANLSGGQRQRLEIARA 629
Query: 338 MVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----SLLQPAPETYNLF 392
+V P++ L +DE ++ LD T I + ++ C ++ S ++
Sbjct: 630 LVRNPSI-LILDEATSALDPETEKIIDDNLRRR---GCTCIIVAHRLSTIRDC------- 678
Query: 393 DDIILLSNGQIVYQGPRE 410
D+II+L G++V +G E
Sbjct: 679 DEIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGY 936
G G + ++G +G GKTT + +LAG + G ++KVS Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996
TV + L + S F E+++ + L+ L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 888 TALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHS 944
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 945 PFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP------- 994
P++ ++ E+LL A + E+ E+ +K + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 995 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGH----NMDE 221
LK ++ I ++T L+GP GK+TLL L L +K++G++T +G N+D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ Q N M++ E +A+ R QG+ + + + R + A + ++
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW--DEV 135
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
+K+ A G+SGGQ++R+ +
Sbjct: 136 KDRLKSHAF--------------------------------GLSGGQQQRLCIARTIAME 163
Query: 342 ALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD T +I
Sbjct: 164 PDVILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 44/232 (18%)
Query: 865 QGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924
QGV D VS + G A++G +GAGKTTL+++L ++ G I + G
Sbjct: 349 QGVFD--------VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGID 398
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEIDSETRKMFIGEVMELVE- 982
T + + TV++ L++ +R + E EV E +
Sbjct: 399 INTVT---------RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKA 447
Query: 983 -------LKPLK--QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
LK +LVG G + LS +R+RL IA ++ N I+ +DE TS LD
Sbjct: 448 AAAHDFILKRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506
Query: 1034 AAIVMRTVRNTVDT---GRTVVCTIHQPSI----DIFEAFDELFLMKRGGYE 1078
A V+N +D RT H+ S D+ D+ L+++G ++
Sbjct: 507 EA----RVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 42/207 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ N+ + V + T
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLI----------------------NLLQRVYDPT 388
Query: 228 AAYISQHDNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
I I +T RE+L + + Q G + R G + D +VY
Sbjct: 389 VGQILIDGIDINTVT-RESLRKSIATVFQDAG----LFNRSIRENIRLGREGATDEEVY- 442
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALAL 345
E +A D+ LK DT+VG+ R +SGG+R+R+ ++ A L
Sbjct: 443 -----EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPIL 493
Query: 346 FMDEISTGLDSSTTFQI---VNCFKQN 369
+DE ++ LD T ++ ++ ++N
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 52/202 (25%)
Query: 858 MPQQMKLQGVS--DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR 908
M ++K++GV+ K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 909 KTGGYI--------TGNIKVSGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWL 959
+ G + + N+ V K R+ +Q + PF ++++++ +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRK------RVGMVFQQPN---PFPKSIFDNVAFG--- 108
Query: 960 RLPPEIDSETRKMFIGEVMELVELKPLKQSLV-----------GLPGVSGLSTEQRKRLT 1008
P + T + + EV+E K L+Q+ + GL LS Q++RL
Sbjct: 109 ---PRMLGTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLC 157
Query: 1009 IAVELVANPSIIFMDEPTSGLD 1030
IA L P +I MDEP S LD
Sbjct: 158 IARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L+G+S P ++G +GAGK+++++ L + G I + +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 934 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLV 991
D+ + +S +L+S +R + SE + E +E +K + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 992 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 32/210 (15%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNIKVS 921
D K LN +S + G TAL+G +G+GK+T+ ++ G + I V
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVD 70
Query: 922 GYPKKQETFARIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEIDSETRKMFIGE 976
G +T I G QN + FV TV + + + R P E K+ + +
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRD 126
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
V+ V + S + LS Q++R+ IA L P II +DE TS LD
Sbjct: 127 VLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEA 1065
+++ +R TV+ H DI EA
Sbjct: 182 ILKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN---MDEF 222
L D+S + PG L +++GP +GKTT++ + GK G V + G + + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 62/254 (24%), Positives = 97/254 (38%), Gaps = 53/254 (20%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHNMDEFVP 224
+L +++ IKPG ++GP SGK+TL KL L G+V +G ++ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 225 ---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
R + Q +N + ++R+ +A +P
Sbjct: 527 AWLRRQMGVVLQ-ENVLFSRSIRDNIALC---------------------------NPGA 558
Query: 282 DV-YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
++ A + I L +T VG E +SGGQR+R+ +VG
Sbjct: 559 PFEHVIHAAKLAGAHDFI-------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVG 610
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIH-INCGTAVISLLQPAPETYNLFDDIILLS 399
L DE ++ LD + I+ N+ I G VI + T D II+L
Sbjct: 611 NPRILIFDEATSALDYESEALIMR----NMREICRGRTVIIIAHRL-STVRACDRIIVLE 665
Query: 400 NGQIVYQGPRELVL 413
GQI G E +L
Sbjct: 666 KGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T+L +S G++T L+G SGK+TLL L S G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
G + + ++GL A +V +SGG+R+R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE ++ LD + ++ + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 221
+L +VS I G + ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL 381
R +SGG+++RV + DE + LD T + N ++ + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 382 LQPAPETY-NLFDDIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSK 439
PE +L D I L NG+I +G P E+V F E G +++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 440 KDQKQYWVHKER 451
++ + ++ +R
Sbjct: 283 RNVSKRYISVDR 294
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 68/259 (26%)
Query: 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 222
Q +LK +S IK G LLG GK+TLL L D G + NG + ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY 407
Query: 223 VPE---RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
E R A + +SQ H+ T+R+ L LA P+
Sbjct: 408 -SEAALRQAISVVSQR-VHLFSATLRDNLL-----------------LA--------APN 440
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG-----DEMIRGISGGQRKRVT 333
A++ V L+ +GL+ + G E R +SGG+++R+
Sbjct: 441 ----------ASDEALIEV-----LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL-- 391
++ A L +DE + GLD+ T QI+ + H V+ + T+ L
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HA-QNKTVLMI------THRLTG 536
Query: 392 ---FDDIILLSNGQIVYQG 407
FD I ++ NGQI+ QG
Sbjct: 537 LEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 55/293 (18%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYNGH 217
LK+VS I G +LG SGK+T +L L +K+ G +T +
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKE 76
Query: 218 NMDEFVPERTAAYISQH-DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
N+ E + I Q+ DN IG TV + +AF G + + +K
Sbjct: 77 NLKEI--RKKIGIIFQNPDNQFIG-ATVEDDIAF-------GLENKKVP----PKK---- 118
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
MK I I D KV D D+ + +SGGQ++RV
Sbjct: 119 ---------MKDI---------IDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIA 154
Query: 336 EMM-VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394
++ + P + +F DE ++ LD +I + +IS+ E D
Sbjct: 155 SVLALNPEIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISITHDMDEAILA-DK 211
Query: 395 IILLSNGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQEVTSKKDQKQ 444
+I+ S G+++ QG + +L E E P ++ L+ + ++++
Sbjct: 212 VIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 979 ELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
E +E P K + VG G S LS Q++R+ IA L+ P I+ +DE TS LD+ + ++
Sbjct: 1339 EFIESLPNKYDTNVGPYGKS-LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
Query: 1038 MRTVRNTVDTG-RTVVCTIHQ 1057
+T+ + D +T++ H+
Sbjct: 1398 EKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 69/282 (24%), Positives = 106/282 (37%), Gaps = 68/282 (24%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL----DSSLKVSGRVTYNGHNMDEFV 223
L D++ I G L ++G GKT+L+ A+ G+L SS+ + G V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP-DPDID 282
P+ + I TVRE + F G+ +E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ TE E V ISGGQ++RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 343 LALFMDEISTGLDSSTTFQIVN-CFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401
D+ + LD+ Q+ + C K + V + L P L D IIL+S G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEG 815
Query: 402 QIVYQGPRELVLEFFESMGF--KCPKRKGVADFLQEVTSKKD 441
I +G E +S K + G D QEV + +
Sbjct: 816 MIKEEGTFA---ELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1057
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1058 PSIDIFEAFDELFLMKRGGYE 1078
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 171 VSGIIKPGRLTLLLGPPASGKTTLLLALAGKL 202
V G++ G LTLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNIKVSGYPKKQETFAR 932
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 933 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
+ QN +H T+ ++ Y+ + E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 990 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET---FA 931
LNGVS + G +++G +G+GK+T ++ G G +K+ G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 932 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R G QN D TV + + + + P + R + E + V + K
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 30/218 (13%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKVSGYPK 925
DD LVL N ++ + AL+G +G+GK+TL +L G Y G I++ G P
Sbjct: 352 DDNLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGEIRLDGRPL 405
Query: 926 KQETFA--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
+ + R Q D P V + ++ L A + L +I E + + +E V+L
Sbjct: 406 SSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQ----VWQALETVQL 455
Query: 984 KPLKQSLV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L +SL GL G LS Q++ L +A LV P I+ +DE T+ +D+ +
Sbjct: 456 AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + V T+V H+ S I EA D + ++ RG
Sbjct: 516 QQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 27/221 (12%)
Query: 851 EVVYSVDMPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
E V +V PQ +K++ ++ +K L N VS +TAL+G SG GK+T + L
Sbjct: 3 EGVQNVAQPQ-IKVENLNLWYGEKQALKN-VSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60
Query: 908 RK---TGGYITGNIKVSG---YPKKQET--FARISGYCEQNDIHSPF-VTVYESLLYSAW 958
I G + + G Y + + G Q +PF +++Y+++ Y
Sbjct: 61 MNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP--NPFPMSIYDNVAYG-- 116
Query: 959 LRLPPEIDSETRKMFIGEVMELVELKPLKQSL---VGLPGVSGLSTEQRKRLTIAVELVA 1015
P I +K G V + L + P +S LS Q++RL IA L
Sbjct: 117 ----PRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAV 171
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
P II DEPTS LD + A + + N + T+V H
Sbjct: 172 KPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
Query: 303 LKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGG+R+RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL----FDDIILLSNGQIVYQG 407
+++ ++ T V+ L NL D +ILL +G+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 68/259 (26%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L+DVS I G L GP +GK+TLL + G+ + G++ NGH++ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
++ + D + + TV E +A R G R E+ RR
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR---GISGGQRKRVTTGE 336
L ++GL + +SGG+++RV
Sbjct: 122 -----------------------LDLVGL--------KHKARALPSQLSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN-CGTAVISLLQPAPETYNLFDD- 394
+V L DE + LD +++I+ F++ IN GT V+ A L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRM 203
Query: 395 ---IILLSNGQIVYQGPRE 410
++ L +G++V R
Sbjct: 204 RHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 219
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG ++
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 56/201 (27%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHNMDEF 222
+LK + +K G + +++GP SGK+TLL + + D SG + +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLKLTDD 67
Query: 223 VPE-----RTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGI 275
+ + Q N +TV E TLA ++ KA
Sbjct: 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLA--------------PIKVKGMSKA--- 110
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
EA L+ +GL A D +SGGQ++RV
Sbjct: 111 ------------------EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIA 147
Query: 336 E-MMVGPALALFMDEISTGLD 355
+ + P + LF DE ++ LD
Sbjct: 148 RALAMNPKVMLF-DEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 46/220 (20%), Positives = 79/220 (35%), Gaps = 47/220 (21%)
Query: 157 ILPSRKQHL-----TILKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVS 209
I+ S HL LK + +T L+GP GK+T L L L + ++
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 210 GRVTYNGHN-----MDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT 264
G V+ G N D + + Q N ++ E + + R GV
Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV-------- 115
Query: 265 ELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324
D V +A+ T ++A + + + E +
Sbjct: 116 --------------KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALSL 149
Query: 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
SGGQ++RV ++ + +DE ++ LD ++ QI N
Sbjct: 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 325 SGGQRKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFK--QNIH------INCG 375
SGGQR+R+ ++ P L L +DE ++ LD S Q+++ + Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
AV+ L +I++ +G+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLL--LALAGKLDSSLKVSGRVTYNGHNM-----D 220
LK+++ I +T ++GP GK+T + L L ++ ++K++G + YNG N+ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + Q N + ++ + +A+ R G + + L E+ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKK-LQEIV--EKS-------- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
+K +A + + + L +SGGQ++R+ +
Sbjct: 136 ----LKDVALWDEVKDRLHTQAL-------------------SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 37/179 (20%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSG 922
G +LN +S + R G + G SG GK+TL+ ++A +G + +S
Sbjct: 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIST 73
Query: 923 YPKKQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
E + + YC Q +P + TVY++L++ P +I ++
Sbjct: 74 LKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQ---------- 111
Query: 980 LVELKPLKQSLV--GLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ L LP ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 112 -PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL 202
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 14/175 (8%)
Query: 890 LMGVSGAGKTTLMDVL---AGRKTGGY-ITGN---IKVSGYPKKQETFARISGYCEQNDI 942
L+G SGAGK++L+ VL ++G I GN + K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002
P +TV ++L+ + P + ++ + +L+E LK P LS
Sbjct: 93 LWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLSGG 145
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYN 215
P+R L +L+DVS + PG +T L+GP SGK+T LL G+V +
Sbjct: 22 PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLD 74
Query: 216 GHNMDEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-RYEMLTELARREK 271
G + ++ + + + Q ++++ +A+ G+ + +E + E A++
Sbjct: 75 GKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAH 128
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKR 331
A I TE E G ++ SGGQ++R
Sbjct: 129 AHSF-----ISELASGYDTEVGEK---------------------GSQL----SGGQKQR 158
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
V ++ L +DE ++ LD+ + Q+
Sbjct: 159 VAIARALIRNPQVLILDEATSALDAESEQQV 189
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L D++ I R+T L+GP GK+TLL L +++G + YNG N+ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD---- 77
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
+ A + IG M + F + YE +A + G K +D
Sbjct: 78 -SGADVVALRRKIG-MVFQRPNPFPK------SIYE---NVAYGPRIHGEKNKKTLD--- 123
Query: 286 KAIATEGQEANVITDYYLKVLGL-DVCADTVVGDEMIRGISGGQRKRVTTGEMM-VGPAL 343
I + LK L D D + + +SGGQ++R+ + V P +
Sbjct: 124 -----------TIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEV 170
Query: 344 ALFMDEISTGLDSSTTFQIVN 364
L MDE + LD T +I +
Sbjct: 171 IL-MDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
+ D S ++ G + +++G SGK+TL+ L ++ + G + +G ++ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERA-------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
L MDE + LD ++ + + + ++ + E + D I ++ +
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEFVPE 225
+KDVS +T ++GP GK+T+L ++ D S +V+G++ + ++
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI------ 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP--DIDV 283
+D + +++R RR KP+P + +
Sbjct: 74 --------YDRGVDPVSIR-----------------------RRVGMVFQKPNPFPAMSI 102
Query: 284 YMKAIA-------TEGQEANVITDYYLKVLGL-DVCADTVVGDEMIRGISGGQRKRVTTG 335
Y IA EA+ I + LK + L D D + + M +SGGQ++R+
Sbjct: 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIA 160
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 177 PGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAF 249
GE+ +R LA
Sbjct: 61 GSGELRLRLALAL 73
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.004
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNIKVSGYPKKQETFARISGYC 937
+TA +G SG GK+T + D++ G G Y G S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 938 EQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL--- 993
++ +PF +++++++ Y P RK ++E + K LK + +
Sbjct: 170 QKP---TPFEMSIFDNVAYG-----PRNNGINDRK-----ILEKIVEKSLKSAALWDEVK 216
Query: 994 ----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYC 937
+S R G A++G +G+GK+TL +LAG +G + + +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 938 EQNDIHSPFVTVYESL--------LYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
Q I F SL + LRL +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNIKVSGYPKKQETFARIS 934
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 935 GYCEQNDIHSPF-VTVYESLLYSAWLR-------LPPEIDSETRKMFIGEVMELVELKPL 986
++ + PF +++E++ Y +R L +++ R + + E+K
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDR 154
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 155 LGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1433 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-248 Score=2287.45 Aligned_cols=1323 Identities=52% Similarity=0.908 Sum_probs=1232.5
Q ss_pred cchHHhhhHHHHhhCCChhhhhhcccccCCCCccccccCCCChHHHHHHHHhhhcCCCCChHHHHHHHHHHHHhcCCCCC
Q 000540 36 EDDEEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLP 115 (1433)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1433)
+||||+|||||+|||||++| +++.+... .++|+.++++.+++...++..+..++|+++++.++++|++++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 44999999999999999999 55543211 179999999999999999999999999999999999999987 899
Q ss_pred cceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccccceeecceeEEEeCCeEEEEEcCCCCcHHHHH
Q 000540 116 KVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLL 195 (1433)
Q Consensus 116 ~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL 195 (1433)
.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+..||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999988766 999999999888777666544 45567899999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCC
Q 000540 196 LALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1433)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1433)
++|+|.++..++..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|++++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999988777789999999999999989999999999999999999999999999999998876 455555431
Q ss_pred CCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCC
Q 000540 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLD 355 (1433)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLD 355 (1433)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHH
Q 000540 356 SSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1433)
Q Consensus 356 s~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~e 435 (1433)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHH
Q 000540 436 VTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLL 515 (1433)
Q Consensus 436 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~ 515 (1433)
+++++++.++|..+..|+.+.++.|+.+.|..++.+.++..+++.++++.+.++.++..++|..+.|+|+++|+.|++.+
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCcc
Q 000540 516 MKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFF 595 (1433)
Q Consensus 516 ~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y 595 (1433)
++||.++++++.++.+++|+++|++|+++.+ ++..++..+.|++||++++.++++++++.++++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999874 55667888999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 000540 596 PPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFAL 675 (1433)
Q Consensus 596 ~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~ 675 (1433)
++|++.++.+++++|++++++++|.+|+||++|+.+++++||.|++++++.+++++++|++++++++++.+|+++|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCccccc------------CCC---cccchhhhhhccc
Q 000540 676 LVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKF------------TPN---SIESLGVQVLKSR 740 (1433)
Q Consensus 676 ~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~------------~~~---~~~~~G~~~L~~~ 740 (1433)
+++.+++||+|++.+||+||+|++|++|++|+++++++|||++++|.|. ... ....+|.+++..+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 9999999999999999999999999999999999999999999999997 111 1356789999998
Q ss_pred Ccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCccccccCCCCCCcccc
Q 000540 741 GFF-----AHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRE 815 (1433)
Q Consensus 741 ~~~-----~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1433)
++. ...+|+|+++|+++||.++|+++.++++.|+++..+.+.++..+...++....... ...
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~-------------~~~ 757 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG-------------SSS 757 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc-------------ccc
Confidence 887 77889999999999999999999999999999988887776544332221100000 000
Q ss_pred cccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCC
Q 000540 816 RNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSG 895 (1433)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nG 895 (1433)
..+ ...+....++.++..|+.|..++++||.|.++++-+++.++ +++++|+|||+.++||.+|||||+||
T Consensus 758 ~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SG 827 (1391)
T KOG0065|consen 758 EIE-------KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESG 827 (1391)
T ss_pred ccc-------ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCC
Confidence 000 00001111345777888899999999999999998887776 67889999999999999999999999
Q ss_pred CChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 000540 896 AGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIG 975 (1433)
Q Consensus 896 aGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~ 975 (1433)
||||||||+|+||.++|.++|+|.+||+|.++++++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|.+++.+++.++|+
T Consensus 828 AGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe 907 (1391)
T KOG0065|consen 828 AGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVE 907 (1391)
T ss_pred CchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000540 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054 (1433)
Q Consensus 976 ~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p-~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 1054 (1433)
++++.+||++++|.+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||
T Consensus 908 ~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCT 986 (1391)
T KOG0065|consen 908 EVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCT 986 (1391)
T ss_pred HHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999 999999999999999999999 8999999999999999999999999999999999999
Q ss_pred ecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcccCCCCCCCccceeeecCccchhhccCCHHHHH
Q 000540 1055 IHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIY 1134 (1433)
Q Consensus 1055 ~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~ 1134 (1433)
+||||.++|+.||++++|++||++||+||+|++++++++||++++|++ |++..||||||||+++.+.+...+.||+++|
T Consensus 987 IHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w 1065 (1391)
T KOG0065|consen 987 IHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIW 1065 (1391)
T ss_pred ecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHH
Confidence 999999999999999999999999999999999999999999999885 6666699999999999988888889999999
Q ss_pred HhcHHHHHHHHHHHhhcCCCCC-CCCccccccCCccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccC
Q 000540 1135 KRSELYRRNKSLIEDLSKPAPG-SKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDL 1213 (1433)
Q Consensus 1135 ~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~ 1213 (1433)
++|+++++++++++++++|+++ +.+..++++|++|+|.|++.|+||++++|||+|.|+++|++++++.||+||++||++
T Consensus 1066 ~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~ 1145 (1391)
T KOG0065|consen 1066 KNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKV 1145 (1391)
T ss_pred hccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeec
Confidence 9999999999999999999988 788889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000540 1214 GGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIV 1293 (1433)
Q Consensus 1214 ~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~ 1293 (1433)
|+ ++||++|.+|++|+++++.+..++..++|.+..||.++||||++||||+.+|++||+++|+||+++++++|.+|+
T Consensus 1146 g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~ 1222 (1391)
T KOG0065|consen 1146 GH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLIT 1222 (1391)
T ss_pred CC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 84 689999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcH
Q 000540 1294 YAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANP 1373 (1433)
Q Consensus 1294 Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp 1373 (1433)
|+|+||.+++.+|+||++++++..+|++++|||+++++||.++|+++++++++++++||||++|++.||.||+||||+||
T Consensus 1223 Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP 1302 (1391)
T KOG0065|consen 1223 YYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSP 1302 (1391)
T ss_pred eeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCccccC----------CCCCHHHHHHHHHh----cccchhHHHHHHHhhcccc
Q 000540 1374 IAWTLYGLIASQFGDMEDKME----------SGETVKHFLEIISI----LNMIFWQQLRVSLLAFQGS 1427 (1433)
Q Consensus 1374 ~~y~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1427 (1433)
++|.++|++..++||.+..|+ .|+||++|+++|++ +.++.....-|.+.+|+..
T Consensus 1303 ~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~ 1370 (1391)
T KOG0065|consen 1303 VTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVA 1370 (1391)
T ss_pred HHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehH
Confidence 999999999999999999994 36899999999999 8888777766666666654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-228 Score=2264.39 Aligned_cols=1404 Identities=61% Similarity=1.054 Sum_probs=1244.3
Q ss_pred ccccccCCCcccCC---C----CccchHHhhhHHHHhhCCChhhhhhcccccC-----CCC---ccccccCCCChHHHHH
Q 000540 19 SRWRTSSMGAFSRS---S----REEDDEEALKWAAIEKLPTYNRLKKGLLTTS-----RGE---AFEVDVSNLGPQERQR 83 (1433)
Q Consensus 19 ~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~ 83 (1433)
++|.. +++|++. + ..|||||+|+|||+||||||+|+|++++.+. .|+ .+|+|+++|+.++++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 44643 6888542 1 2578999999999999999999999999652 122 2369999999999999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHhcCCCCCcceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccc
Q 000540 84 LINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQ 163 (1433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1433)
++|+++++.++|+++++.++++|.+++|+++|+++|+|+||+|++++.++++.+||++|...+.++.+.+..+...+++.
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~ 176 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKT 176 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988877665554445556
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1433)
+++||+|+||.++||++++|+||||||||||||+|+|+++++.+++|+|++||+++++..+++.++||+|+|.|++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 68899999999999999999999999999999999999988777899999999998877667889999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+|||.|+++|++.+.++++..+..+++++.++.|+.+++.+|++...++.+.+..++++|+.+||++|+||.||++++++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999999998776666555566677777777888888889999888888888899999999999999999999999999
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+++++|||.++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcCCcc
Q 000540 404 VYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFD 483 (1433)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1433)
+|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++.+.++++.|.+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 496 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD 496 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988888887777788888999999999999998888887777766
Q ss_pred ccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHHHHH
Q 000540 484 KSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFF 563 (1433)
Q Consensus 484 ~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~ 563 (1433)
+...++.....++|..++++|+++|++|++++++||+..+++|+++.+++|+++|++||+++.+..+..++..+.|++||
T Consensus 497 ~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff 576 (1470)
T PLN03140 497 KSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576 (1470)
T ss_pred hhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Confidence 65556666666789999999999999999999999999999999999999999999999987665555667788999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHH
Q 000540 564 ATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLL 643 (1433)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~l~l 643 (1433)
++++.++++++++..++.++|+|+|||+.+||++|+|++++++.++|+.++++++|++|+|||+|+++++++||.|++++
T Consensus 577 ~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~ 656 (1470)
T PLN03140 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCcccc
Q 000540 644 LAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKK 723 (1433)
Q Consensus 644 ~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~ 723 (1433)
++.+++++++|++++++++++.+|+.+++++++++++++||++++++||+||+|++|+||++|+++++++|||.+.+|.+
T Consensus 657 ~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~ 736 (1470)
T PLN03140 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN 736 (1470)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred cC-CCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccc-cC-Cc
Q 000540 724 FT-PNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDST-IG-GT 800 (1433)
Q Consensus 724 ~~-~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 800 (1433)
.. .+.....|.++|..+++.....|+|++++++++|+++|++++++++++.++..+.......+......... .. ..
T Consensus 737 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1470)
T PLN03140 737 KMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816 (1470)
T ss_pred cccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc
Confidence 32 23345789999999999988899999999999999999999999999998766554443221111000000 00 00
Q ss_pred cccccCCC--CCC----cccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEE
Q 000540 801 VQLSTHGE--SGN----DIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVL 874 (1433)
Q Consensus 801 ~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~i 874 (1433)
........ ... ........... ...........++++.+|+.|..++|+||+|.++++...+..+..++++.+
T Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~i 895 (1470)
T PLN03140 817 LSSADGNNTREVAIQRMSNPEGLSKNRD-SSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQL 895 (1470)
T ss_pred cccccccccccccccccccccccccccc-cccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceE
Confidence 00000000 000 00000000000 000000112234556678889999999999999987665555555566789
Q ss_pred eeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHH
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954 (1433)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 954 (1433)
|+|||++++||+++||+|||||||||||++|+|+.++|..+|+|.+||.+.++..+++.+|||+|+|.+++.+||+|+|.
T Consensus 896 L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 99999999999999999999999999999999998777789999999988765556678999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000540 955 YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1433)
Q Consensus 955 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~ 1034 (1433)
|++.++.+.+.+.+++++.++++++.++|.++.|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++
T Consensus 976 ~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a 1055 (1470)
T PLN03140 976 YSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 (1470)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 99988877666666777889999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcccCCCCCCCccce
Q 000540 1035 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWM 1114 (1433)
Q Consensus 1035 ~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~ 1114 (1433)
..+++.|++++++|+||||++|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||
T Consensus 1056 ~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~ 1135 (1470)
T PLN03140 1056 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWM 1135 (1470)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhh
Confidence 99999999999889999999999997789999999999988999999999988899999999998888899999999999
Q ss_pred eeecCccchhhccCCHHHHHHhcHHHHHHHHHHHhhcCCCCCCCCccccccCCccHHHHHHHHHHHHHHHhhcChhHHHH
Q 000540 1115 LEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAV 1194 (1433)
Q Consensus 1115 l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~ 1194 (1433)
+|+++.+.+...+.||++.|++|++++++++.++++..+.++.++..++++|++|+++|+++|+||+++++||||.|+++
T Consensus 1136 l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~ 1215 (1470)
T PLN03140 1136 LEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLV 1215 (1470)
T ss_pred hhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 99998766655667999999999999998888887777666666666678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhhhhhhHHHhhhcCCCCChHHHHHHH
Q 000540 1195 RFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQ 1274 (1433)
Q Consensus 1195 r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~~a~ 1274 (1433)
|+++++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|++..||+||+|||++|+|++++|++|+
T Consensus 1216 r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~ 1295 (1470)
T PLN03140 1216 RFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ 1295 (1470)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccc
Q 000540 1275 VMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGF 1354 (1433)
Q Consensus 1275 ~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf 1354 (1433)
+++|+||.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+.++++++++|++||||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCccccC-C----CCCHHHHHHHHHhcccchhHHHHHHHhhcc
Q 000540 1355 IIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKME-S----GETVKHFLEIISILNMIFWQQLRVSLLAFQ 1425 (1433)
Q Consensus 1355 ~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1425 (1433)
++|+++||+||+|+||+||++|+++|+++|||+|.+..|. + ++||++|+.++||+++++.+.-.+.+++|=
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~ 1451 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFT 1451 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHH
Confidence 9999999999999999999999999999999999988764 2 479999999999999998654455555543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-182 Score=1834.36 Aligned_cols=1259 Identities=32% Similarity=0.548 Sum_probs=1034.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCC--cceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccccceeecce
Q 000540 94 VDNEKFLLKLKNRIERVGIDLP--KVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDV 171 (1433)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1433)
.|++++++.+.++.++.+...| +++|+|+||+|++ ...+...+||+.|...+.......... ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566676655554455555555 9999999999998 344566789999988776653332221 12334567899999
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-CCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCCHHHHHH
Q 000540 172 SGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTVRETLA 248 (1433)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1433)
|+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++++||+||+.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997421 124999999999875432 2356999999999999999999999
Q ss_pred HhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhh
Q 000540 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328 (1433)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1433)
|+++++.+..+.... .+. +..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998776421110000 000 001223567899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 000540 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408 (1433)
Q Consensus 329 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 408 (1433)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+++++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999998876678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcCCcccc---
Q 000540 409 RELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKS--- 485 (1433)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 485 (1433)
++++.+||+++||+||++.++|||++++++++++ +++...+. ....+.+++++.|+.++.++++..+++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987543 22211111 123578899999999887766655543321110
Q ss_pred ------------ccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCcccc
Q 000540 486 ------------KSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTD 553 (1433)
Q Consensus 486 ------------~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~ 553 (1433)
+..+.......|..++|.|+++|++|+++.++||+..++.++++.+++|+++|++||+.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000112234568899999999999999999999999999999999999999999999765432 34
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCH
Q 000540 554 GGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNA 633 (1433)
Q Consensus 554 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~ 633 (1433)
.+.+.|++||++++.++.++.++..++.+|++|+|||..++|++++|++|+++.++|+.++.+++|++|+|||+|+++++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56778999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHH
Q 000540 634 GRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVA 713 (1433)
Q Consensus 634 ~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 713 (1433)
++||.+++++++...++++++++++++++++.+|+.+++++++++++++||++++++||+||+|++|+||++|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccC--C----------------------CcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 000540 714 NEFLGHSWKKFT--P----------------------NSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTL 769 (1433)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~ 769 (1433)
|||.+..+.|.. | +.....|.++|.. ++.....|.|.+++++++|+++|.++..+
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999888741 1 0113467888874 33445678999999999999999999999
Q ss_pred HHHhccccCCCcccccccccccccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeE
Q 000540 770 ALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTF 849 (1433)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 849 (1433)
++++.++.......+..+........ +.....+......++...+..................+.......++|
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 762 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAK------KAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHW 762 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchh------hcccccccccccccccccCCCCccccccccccccccccccCCCceEEE
Confidence 99998754433222211110000000 000000000001111110000000000000000000000011235899
Q ss_pred eceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCccCccc
Q 000540 850 DEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYPKKQE 928 (1433)
Q Consensus 850 ~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~ 928 (1433)
+|++|.++.+ .+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+...
T Consensus 763 ~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~- 832 (1394)
T TIGR00956 763 RNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS- 832 (1394)
T ss_pred EeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-
Confidence 9999987532 23467999999999999999999999999999999999987644 456999999998753
Q ss_pred cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 000540 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLT 1008 (1433)
Q Consensus 929 ~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ 1008 (1433)
.+++.+|||+|+|.+++.+||+|++.|++.++.+...+++++++.++++++.++|.++.|+.+|.++ .+|||||||||+
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~ 911 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLT 911 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHH
Confidence 4677899999999999999999999999988877666667777889999999999999999998764 389999999999
Q ss_pred HHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcc
Q 000540 1009 IAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRH 1087 (1433)
Q Consensus 1009 iA~aL~~~p~-iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~ 1087 (1433)
||+||+.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.++.
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~ 991 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGEN 991 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccc
Confidence 9999999997 999999999999999999999999998889999999999997678899999999998899999999988
Q ss_pred cchHHHHHhhCCCcccCCCCCCCccceeeecCccchhhccCCHHHHHHhcHHHHHHHHHHHhhcCCCCCCC---Cccccc
Q 000540 1088 SCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSK---DLHFAA 1164 (1433)
Q Consensus 1088 ~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1164 (1433)
++++++||+++ |.++||+++|||||+||+++.+.+.....||.+.|+.|++++...+.++++..+..... +....+
T Consensus 992 ~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1394)
T TIGR00956 992 SHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALS 1070 (1394)
T ss_pred cchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccccc
Confidence 88999999986 66689999999999999987654443456899999999998877666555433221111 111224
Q ss_pred cCCccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhc
Q 000540 1165 QYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSS 1244 (1433)
Q Consensus 1165 ~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 1244 (1433)
+|+.|+++|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ ..
T Consensus 1071 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~ 1146 (1394)
T TIGR00956 1071 KYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQ 1146 (1394)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 689999999999999999999999999999999999999999999999986 47899999999999988877764 45
Q ss_pred ccchhhhhhhHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHH-------HHHHHHHHHHH
Q 000540 1245 VQPIVSVERTVF-YREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAK-------FFWYIFFMYVT 1316 (1433)
Q Consensus 1245 ~~~~~~~er~vf-~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~~ 1316 (1433)
++|.+..||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+ ||+|++++++.
T Consensus 1147 ~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~ 1226 (1394)
T TIGR00956 1147 YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF 1226 (1394)
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHH
Confidence 567787888875 9999999999999999999999999999999999999999999988876 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCccccC--
Q 000540 1317 LLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKME-- 1394 (1433)
Q Consensus 1317 ~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-- 1394 (1433)
.++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.
T Consensus 1227 ~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~ 1306 (1394)
T TIGR00956 1227 FLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVK 1306 (1394)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998884
Q ss_pred --------CCCCHHHHHHHHHh
Q 000540 1395 --------SGETVKHFLEIISI 1408 (1433)
Q Consensus 1395 --------~~~~~~~~~~~~~~ 1408 (1433)
+|+||++|+.+|..
T Consensus 1307 e~~~f~pp~~~tC~~y~~~~~~ 1328 (1394)
T TIGR00956 1307 ELLTFNPPSGQTCGEYMKPYLE 1328 (1394)
T ss_pred ccceecCCCCCCHHHHHHHHHh
Confidence 37999998877664
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-90 Score=873.87 Aligned_cols=566 Identities=25% Similarity=0.415 Sum_probs=468.6
Q ss_pred CCceeeEeceEeEeecccc----------------hhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhc
Q 000540 843 EPHSLTFDEVVYSVDMPQQ----------------MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 906 (1433)
.+..+.|.|++|.++.... .+....+++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999875421 011112334578999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000540 907 GRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986 (1433)
Q Consensus 907 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 986 (1433)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999886432 345689999999999999999999999887766555566667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhc
Q 000540 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1066 (1433)
Q Consensus 987 ~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~ 1066 (1433)
.|+.+|....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcccCCCCCCCccceeeecCccchhh-----c----cCCHHHHHHhc
Q 000540 1067 DELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVA-----L----GVDFSDIYKRS 1137 (1433)
Q Consensus 1067 D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~-----~----~~~~~~~~~~s 1137 (1433)
|++++|++ |+++|.|+. +++++||++++ . +||+++|||||++|+++...+.. . ..+..+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999986 799999997 58999999995 3 69999999999999987532100 0 01123345321
Q ss_pred HHHHHHHHHHHh--hcC-CCC-----CCCCcc-ccccCCccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 000540 1138 ELYRRNKSLIED--LSK-PAP-----GSKDLH-FAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGS 1208 (1433)
Q Consensus 1138 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1208 (1433)
. .+...+.++. ... +.. ..+... ....+..+|++|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000 000 001000 11235578999999999999988 99999999999999999999999
Q ss_pred HhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000540 1209 IFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLV 1288 (1433)
Q Consensus 1209 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~ 1288 (1433)
+||+++ ..+++++.|++|+++++.++.+++.+++.++.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 000540 1289 YSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWY 1368 (1433)
Q Consensus 1289 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1368 (1433)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhcHHHHHHHHHHHHhhCCCcc-----ccCC-----CCCHHHHHHHHHhcccchhHHHHHHHhhcccc
Q 000540 1369 YWANPIAWTLYGLIASQFGDMED-----KMES-----GETVKHFLEIISILNMIFWQQLRVSLLAFQGS 1427 (1433)
Q Consensus 1369 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1427 (1433)
+|+||++|++++++.|||++.+. .|.. +..|. ++.+....+.+.|.++.+ |+++-+.
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~-~~~~~~~~~~~~~~~~~~-l~~~~~~ 645 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK-FVEEDVAGQISPATSVSV-LIFMFVG 645 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc-cchhhhhcccchHHHHHH-HHHHHHH
Confidence 99999999999999999987643 4531 12343 555555556778887554 3333333
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-90 Score=864.95 Aligned_cols=556 Identities=33% Similarity=0.588 Sum_probs=485.3
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEc
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVS 921 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 921 (1433)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3467899999998764321 3468999999999999999999999999999999999998764 789999999
Q ss_pred CccCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 922 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
|++...+.+++.+|||.|+|.++|++||+|++.|+|.+|+|...+.++++++|+++++.+||.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98887788899999999999999999999999999999999988999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
||||||+||.+|+++|+||||||||||||+.++.+++++|++++++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred CCCCcccchHHHHHhhCCCcccCCCCCCCccceeeecCcc-chhhccCCHHHHHHh------cHHHHHHHH-HHHhhcCC
Q 000540 1082 GPLGRHSCHLVSYFEAIPGVEKIKDGYNPATWMLEVSAPS-QEVALGVDFSDIYKR------SELYRRNKS-LIEDLSKP 1153 (1433)
Q Consensus 1082 G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~-~~~~~~~~~~~~~~~------s~~~~~~~~-~~~~~~~~ 1153 (1433)
|+. +++.+||+++ |. +||+++|||||.+|+.+.. ..... .+..+.++. .+...+... ..+.+..
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLST- 324 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhccc-
Confidence 997 6899999998 44 5999999999999988742 11000 011111111 110111100 0011111
Q ss_pred CCCCCCccccccCCccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHH
Q 000540 1154 APGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTA 1233 (1433)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~ 1233 (1433)
.+. .+.....+||.|+..+++|.+++.+|+|.+...|.++.+++|+++|++||+++. +..+++++.|++|+.
T Consensus 325 ---~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 325 ---SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred ---ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 111 111127899999999999999999999999999999999999999999999975 456677999999999
Q ss_pred HHHHHHhhhhcccchhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHH
Q 000540 1234 IMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFM 1313 (1433)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~ 1313 (1433)
+.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCcccc
Q 000540 1314 YVTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKM 1393 (1433)
Q Consensus 1314 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~ 1393 (1433)
++..+.++++|++++++.||...|+.+++++...+++|+||+++.++||+||+|++|+|+++|++||++.|||++....|
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999744444
Q ss_pred C------CCCCHHHHHHHHHhcccchhHHHHHHHhh
Q 000540 1394 E------SGETVKHFLEIISILNMIFWQQLRVSLLA 1423 (1433)
Q Consensus 1394 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1423 (1433)
. -..+..++++..-..+.++|.++.+++..
T Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 592 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAF 592 (613)
T ss_pred ccCcCCcccccHHHHHHhcCCcccccchhHHHHHHH
Confidence 2 12456788777766688899997776654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=862.69 Aligned_cols=546 Identities=30% Similarity=0.486 Sum_probs=473.7
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCccCccccccceEEEeecCCCCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 948 (1433)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986543 358999999998765566788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTs 1027 (1433)
|+||+.|++.++.+.+...+++++.++++++.+||.++.|+.+|.++ .++||||||||++||+||+.+|++|||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999887777777788889999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcccCCCC
Q 000540 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDG 1107 (1433)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~ 1107 (1433)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.||. +++.+||++++ .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 99999999999999999888999999999998889999999999985 799999997 58899999984 369999
Q ss_pred CCCccceeeecCccchhh-----ccCCHHHHHHhcHHHHHHHHHHHhhcCCCC---CCCCccccccCCccHHHHHHHHHH
Q 000540 1108 YNPATWMLEVSAPSQEVA-----LGVDFSDIYKRSELYRRNKSLIEDLSKPAP---GSKDLHFAAQYSQSAFTQFLACLW 1179 (1433)
Q Consensus 1108 ~npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~ll~ 1179 (1433)
.|||||++|+++.+.+.. ...++.+.|++|+.+++..+.......+.+ ........++|..+++.|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999986543211 112456677777766655443332111111 111111234678999999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhhhhhhHHHhh
Q 000540 1180 KQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTVFYRE 1259 (1433)
Q Consensus 1180 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~vf~rE 1259 (1433)
|+++++||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.++..+.+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46789999999999999998888778888999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000540 1260 KAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHHIAAI 1339 (1433)
Q Consensus 1260 ~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1339 (1433)
+++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCcc-ccCC---CCCH---HHHHHHHHhcc-c
Q 000540 1340 VSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMED-KMES---GETV---KHFLEIISILN-M 1411 (1433)
Q Consensus 1340 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~---~~~~---~~~~~~~~~~~-~ 1411 (1433)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. .|.+ +..| ++++.+.+|++ .
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998774 5641 1224 35555567776 4
Q ss_pred chhHHHHHHHhhccc
Q 000540 1412 IFWQQLRVSLLAFQG 1426 (1433)
Q Consensus 1412 ~~~~~~~~~~~~~~~ 1426 (1433)
++|.++.+ |++|-+
T Consensus 586 ~~~~~~~i-l~~~~~ 599 (617)
T TIGR00955 586 DLYLDLIG-LVILIF 599 (617)
T ss_pred cHHHHHHH-HHHHHH
Confidence 56777554 444433
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-86 Score=893.84 Aligned_cols=539 Identities=25% Similarity=0.439 Sum_probs=466.6
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--ceEEEEEEEcCccCcc--ccccceEEEeecCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKVSGYPKKQ--ETFARISGYCEQNDIHSP 945 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 945 (1433)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ ...+|+|.+||.+... ..+++.++|++|+|.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 446799999999999999999999999999999999998532 2468999999987643 234566999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeE
Q 000540 946 FVTVYESLLYSAWLRLPP----EIDSETRKM-FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1433)
Q Consensus 946 ~lTv~E~l~f~a~lr~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iL 1020 (1433)
.+||+|++.|++.++.+. ....+++++ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998887643 233444333 356789999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCC
Q 000540 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIP 1099 (1433)
Q Consensus 1021 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~ 1099 (1433)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|+. .++.+||++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999864 999999999998789999999999996 789999997 58999999994
Q ss_pred CcccCCCCCCCccceeeecCccchh----------hccCCHHHHHHhcHHHHHHHHHHHhhcCCC---------------
Q 000540 1100 GVEKIKDGYNPATWMLEVSAPSQEV----------ALGVDFSDIYKRSELYRRNKSLIEDLSKPA--------------- 1154 (1433)
Q Consensus 1100 ~~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1154 (1433)
. +||+++|||||++|+++++... ....+|++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4 6999999999999998764311 122479999999998877666554321110
Q ss_pred CCCCCccccccCCccHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHH
Q 000540 1155 PGSKDLHFAAQYSQSAFTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAI 1234 (1433)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1234 (1433)
..++.....+.|..|+++|+++|++|+++++||||.++.+|+++.+++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122234688999999999999999999999999999999999999999999999985 4678999999999999
Q ss_pred HHHHHhhhhcccchhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHH
Q 000540 1235 MFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMY 1314 (1433)
Q Consensus 1235 ~~~~~~~~~~~~~~~~~er~vf~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1314 (1433)
+++++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 44567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCccccC
Q 000540 1315 VTLLFFTFYGMLTVAITPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKME 1394 (1433)
Q Consensus 1315 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1394 (1433)
++.++++++++++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777663
Q ss_pred ---C-----------CC--------------CHHHHHHHHHhcc-cchhHHHHH
Q 000540 1395 ---S-----------GE--------------TVKHFLEIISILN-MIFWQQLRV 1419 (1433)
Q Consensus 1395 ---~-----------~~--------------~~~~~~~~~~~~~-~~~~~~~~~ 1419 (1433)
+ ++ +-.+|++..|+++ .+.|.++.+
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gi 674 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGI 674 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHH
Confidence 0 11 2258999766666 445666444
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-85 Score=878.45 Aligned_cols=569 Identities=22% Similarity=0.372 Sum_probs=472.3
Q ss_pred CCCceeeEeceEeEeec-------ccc----------hh-hcc---ccCCceEEeeeeEEEEeCCcEEEEEccCCCChhH
Q 000540 842 FEPHSLTFDEVVYSVDM-------PQQ----------MK-LQG---VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 900 (1433)
Q Consensus 842 ~~~~~i~~~~v~~~~~~-------~~~----------~~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKST 900 (1433)
.+...+.|+|+++.... |.. +. ..+ .++.++.+|+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34567999999887652 110 00 001 1123567999999999999999999999999999
Q ss_pred HHhhhcCCCCC-ceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH--
Q 000540 901 LMDVLAGRKTG-GYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------IDSETR-- 970 (1433)
Q Consensus 901 Ll~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~-- 970 (1433)
||++|+|+.++ ...+|+|.+||.+......++.++||+|+|.|++.+||+|++.|++.++.+.. ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 99999998653 24689999999987544446779999999999999999999999988764211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 971 ----------------------KMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 971 ----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcccCCCC
Q 000540 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDG 1107 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~ 1107 (1433)
||+.++..+++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+++|+||. +++.+||++++ . +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCCC
Confidence 999999999999999976 4899999999998889999999999986 799999997 68999999994 4 69999
Q ss_pred CCCccceeeecCccch-h-----------hccCCHHHHHHhcHHHHHHHHHHHhhcCCCCCCCCccccccCCccHHHHHH
Q 000540 1108 YNPATWMLEVSAPSQE-V-----------ALGVDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSAFTQFL 1175 (1433)
Q Consensus 1108 ~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~ 1175 (1433)
+|||||++|++++... . ....+|++.|++|+.+++..+.++.........+.....++|..|++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999886332 1 012368999999988876655443211111111111123468899999999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhhhhhhH
Q 000540 1176 ACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVSVERTV 1255 (1433)
Q Consensus 1176 ~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 1255 (1433)
.|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+..+|++|++++++++.++.. ++.+..||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccch
Confidence 999999999999999999999999999999999999998654444566778999999998888776655 4677889999
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 000540 1256 FYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAITPNHH 1335 (1433)
Q Consensus 1256 f~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~ 1335 (1433)
|+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCccc---cC-CCC-CHHHHHHHHHhcc
Q 000540 1336 IAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDK---ME-SGE-TVKHFLEIISILN 1410 (1433)
Q Consensus 1336 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~ 1410 (1433)
+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|++.|||.+.... |. ... +-.+|| +.+++.
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcC
Confidence 999999999999999999999999999999999999999999999999999765422 21 122 335566 566665
Q ss_pred c---chhHHHHH
Q 000540 1411 M---IFWQQLRV 1419 (1433)
Q Consensus 1411 ~---~~~~~~~~ 1419 (1433)
. .+|.++.+
T Consensus 758 ~~~~~~w~~~~i 769 (1470)
T PLN03140 758 TDKNWYWIGVGA 769 (1470)
T ss_pred ccccchhhhHHH
Confidence 2 23555433
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=769.66 Aligned_cols=582 Identities=30% Similarity=0.503 Sum_probs=490.2
Q ss_pred CcceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccccceeecceeEEEeCCeEEEEEcCCCCcHHHH
Q 000540 115 PKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTL 194 (1433)
Q Consensus 115 ~~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTL 194 (1433)
..++++|+|+++++... .+ ..+++|+||||+++|||++||+||+|||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 45789999999886531 11 34679999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcC
Q 000540 195 LLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (1433)
Q Consensus 195 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1433)
|++|+|+.....+++|+|++||++.+....++.+|||.|+|.+++++||+|++.|+++++-+..
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~---------------- 136 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS---------------- 136 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC----------------
Confidence 9999999987667899999999887766667899999999999999999999999998875321
Q ss_pred CCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCC
Q 000540 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGL 354 (1433)
Q Consensus 275 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgL 354 (1433)
...++.+++++++++.|||.+|+||+||+...||+||||||||+||..|+.+|+|||||||||||
T Consensus 137 ---------------~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 137 ---------------LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred ---------------CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 11234567899999999999999999999989999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHH
Q 000540 355 DSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1433)
Q Consensus 355 Ds~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 434 (1433)
|+.++.++++.|+++++. |+|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChh--hhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHH
Q 000540 435 EVTSKK--DQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRE 512 (1433)
Q Consensus 435 ev~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~ 512 (1433)
++.+.+ .+..... .......+.++..+...+.......... + ..........++|.|+..+.+|.
T Consensus 281 ~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLS----T-SKKVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhcc----c-ccccccccCCcHHHHHHHHHHHH
Confidence 987742 1110000 0000011111100000000000000000 0 00001111678999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHhhc
Q 000540 513 LLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFS-EISMTIAKLPVFYKQRD 591 (1433)
Q Consensus 513 ~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~~~~~~~~~vf~ker~ 591 (1433)
+..++|++..+..|.++.+.+++++|++||+.+.... ......|++|+.+....+..+. .++.+..++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999997743332 2335678888888888666655 68889999999999999
Q ss_pred CCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 000540 592 FRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFG 671 (1433)
Q Consensus 592 ~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~ 671 (1433)
++.|+.++|++++.+.++|+.++.+++|++++|||+|++++..+|+.+.++.++..+++.+++.+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCcccccCC--CcccchhhhhhcccCccccchhH
Q 000540 672 SFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTP--NSIESLGVQVLKSRGFFAHAYWF 749 (1433)
Q Consensus 672 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~ 749 (1433)
+++++.+++++||+++.++||.||+|+.|+|+.+|++++++.|||.+....|... ..+...|.++++..++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999999744444332 3456778889988887654 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000540 750 WLGLGALFGFVLLFNLGFTLALTFLN 775 (1433)
Q Consensus 750 w~~~g~l~g~~l~f~~~~~~~l~~~~ 775 (1433)
|.++.+++++.++|.++.++++++..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68889999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-79 Score=775.56 Aligned_cols=569 Identities=27% Similarity=0.420 Sum_probs=479.3
Q ss_pred cccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000540 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1433)
+.++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875456899999999886544567899999999999999
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc-
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM- 320 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~- 320 (1433)
||+|||.|+++++.+... ..++.+.+++++++.+||++++||.||+++
T Consensus 115 TV~e~l~f~~~~~~~~~~-------------------------------~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------------------------------TKKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------------------------------CHHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999877532110 011223467889999999999999999864
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
.++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .+.|+++++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999875 4788999999999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|+++|+|+++++.+||+++|++||++.+++||+.++++.....+. . .....+++.+.|+.++..++.......
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998765322110 0 011234555666655444433322221
Q ss_pred Cccccc---cccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccch
Q 000540 481 PFDKSK---SHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIY 557 (1433)
Q Consensus 481 ~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 557 (1433)
...+.. ..........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00011123457788999999999999999999999999999999999999999999765432 334556
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHH
Q 000540 558 AGALFFATVMVMFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRF 636 (1433)
Q Consensus 558 ~g~lf~~~~~~~~~~~-~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~f 636 (1433)
.|++|+.++...+.++ ..+..+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889998888777754 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhh
Q 000540 637 FKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEF 716 (1433)
Q Consensus 637 f~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 716 (1433)
|.+++++++...++.+++.++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCC---cccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000540 717 LGHSW-KKFTPN---SIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFL 774 (1433)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~ 774 (1433)
.+..+ .|...+ .+...|.+++..+|+... +.|.++++++++.++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 443211 133458899998888654 458899999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-78 Score=766.98 Aligned_cols=609 Identities=21% Similarity=0.342 Sum_probs=468.7
Q ss_pred CCcceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccccceeecceeEEEeCCeEEEEEcCCCCcHHH
Q 000540 114 LPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTT 193 (1433)
Q Consensus 114 ~~~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKST 193 (1433)
.+.++++|.|+++.+.......+... ....+.......+...+ ...+.+|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQ-IQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccccc-CCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35789999999998754210111100 01110000000011111 12457999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhc
Q 000540 194 LLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1433)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1433)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.....
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------------- 173 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------------- 173 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC--------------
Confidence 999999998874 3589999999987542 235699999999999999999999998765421100
Q ss_pred CCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000540 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTG 353 (1433)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsg 353 (1433)
..++...+++++++.+||++++||.||++..++|||||||||+||++|+.+|++|+|||||+|
T Consensus 174 -----------------~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 174 -----------------TKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 001123457889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHH
Q 000540 354 LDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1433)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1433)
||+.++.++++.|+++++ .++|+++++||+..+++++||+|++|++|+++|+|+++++.+||+++||+||.+.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999875 5778888888887789999999999999999999999999999999999999999999999
Q ss_pred HHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC---Cccccc-----c-ccccccccccCCcHHHH
Q 000540 434 QEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT---PFDKSK-----S-HRAALTTEVYGAGRREL 504 (1433)
Q Consensus 434 ~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~-~~~~~~~~~y~~~~~~~ 504 (1433)
.++++...+.......+.+ ...+.+.+.|++... ......... +....+ . .........+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 112233344432111 111111000 000000 0 00000112345689999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHHHHHHHHHHHH-HHHHHHHHHhhhh
Q 000540 505 LKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMF-NGFSEISMTIAKL 583 (1433)
Q Consensus 505 ~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~~ 583 (1433)
+.++++|.++. +|++.....|+++.+++|+++|++||+.+ ..+.+...|++||.+++.++ ..+..+..+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999653 23456678999998777554 5667888888999
Q ss_pred hHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000540 584 PVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRN 663 (1433)
Q Consensus 584 ~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~ 663 (1433)
++|+|||..++|++++|++|+++.++|+.++.+++|++++|||+|+++++++||.+++++++...++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCcc-----cccCCCcccchhhhhhc
Q 000540 664 MVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSW-----KKFTPNSIESLGVQVLK 738 (1433)
Q Consensus 664 ~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~G~~~L~ 738 (1433)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976542 34321110001111222
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000540 739 SRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLN 775 (1433)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~ 775 (1433)
...+. ....|.++++|++++++|+++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234678889999999999999999997643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=754.10 Aligned_cols=515 Identities=26% Similarity=0.464 Sum_probs=459.4
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCccCccccccceEEEeecCCCCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 948 (1433)
.+..+|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+....++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999965432 235799999999776544788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000540 949 VYESLLYSAWLRLPPE----IDSETRK-MFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLD 1023 (1433)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|++||+..++|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999988732 2222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhhCCCcc
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVE 1102 (1433)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~ 1102 (1433)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. .++++||++++ .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999864 899999999999999999999999997 799999998 48999999985 3
Q ss_pred cCCCCCCCccceeeecCccchh-----------hcc-CCHHHHHHhcHHHHHHHHHHHhhcCCCCCCCCccccccCCccH
Q 000540 1103 KIKDGYNPATWMLEVSAPSQEV-----------ALG-VDFSDIYKRSELYRRNKSLIEDLSKPAPGSKDLHFAAQYSQSA 1170 (1433)
Q Consensus 1103 ~~~~~~npad~~l~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1433)
+||++.++|||+.++++...+. ... .+|++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999998832111 111 4799999999999887754433222222333344456899999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHhHHHHHhHHHHHHHHHHHhhhhcccchhh
Q 000540 1171 FTQFLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLGGKTEKRQDLLNAMGSMFTAIMFLGIQYCSSVQPIVS 1250 (1433)
Q Consensus 1171 ~~Q~~~ll~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1250 (1433)
|.|++.|+.|.++.+.||..|+..++++.+++|+++|++|++... .+..+.+.+.|++||++++..+++...+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999972 5677899999999999999998887776 5566
Q ss_pred hhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000540 1251 VERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYSSIVYAMMEFDWTAAKFFWYIFFMYVTLLFFTFYGMLTVAI 1330 (1433)
Q Consensus 1251 ~er~vf~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1330 (1433)
+.|+||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||.|+++++++..|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCCccccC
Q 000540 1331 TPNHHIAAIVSTLFYGIWNIFSGFIIPRPRIPVWWRWYYWANPIAWTLYGLIASQFGDMEDKME 1394 (1433)
Q Consensus 1331 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1394 (1433)
+|+...|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+-.|.
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~ 659 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCS 659 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999887774
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-75 Score=737.07 Aligned_cols=835 Identities=21% Similarity=0.260 Sum_probs=444.3
Q ss_pred HHHHHHHhhhcCCCCChHHHHHHHHHHHHhcCCCCCcceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccC
Q 000540 80 ERQRLINKLVTVPEVDNEKFLLKLKNRIERVGIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILP 159 (1433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1433)
....+.|.+...+..|... ... .-.+-...+++|+|++.+ +|
T Consensus 320 aa~~I~~~i~~~~~i~~~~-~~~-------~~~~~~~g~ief~nV~Fs------------------------------YP 361 (1228)
T KOG0055|consen 320 AAYRIFETIDRKPSIDPYS-KGG-------RVLSSIKGEIEFRNVCFS------------------------------YP 361 (1228)
T ss_pred chHHHHHHhcCCCCCCccc-ccC-------CcccccccceEEEEEEec------------------------------CC
Confidence 4566677777766665432 100 011223456788886543 45
Q ss_pred CccccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC
Q 000540 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN 236 (1433)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1433)
+|+ +..||+|+|+.|++|+.+||+|||||||||++++|.++++|+ +|+|.++|.++++++. +.++|.|+|+|.
T Consensus 362 sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 362 SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechh
Confidence 554 567999999999999999999999999999999999999998 9999999999988765 468999999985
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
++..||+|||.|+..- ...+.+.++++... ..--+..|++.+||.|
T Consensus 438 -lF~~tI~eNI~~G~~d----at~~~i~~a~k~an-----------------------------a~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 438 -LFATTIRENIRYGKPD----ATREEIEEAAKAAN-----------------------------AHDFILKLPDGYDTLV 483 (1228)
T ss_pred -hhcccHHHHHhcCCCc----ccHHHHHHHHHHcc-----------------------------HHHHHHhhHHhhcccc
Confidence 5568999999998521 12233333332211 1112456888999999
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
|++++. |||||||||+|||||+.+|+||+||||||+||+.+...+.+.|.+.. .++|+++ +.|..+.+ +.+|+|+
T Consensus 484 ge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStI-rnaD~I~ 558 (1228)
T KOG0055|consen 484 GERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTI-RNADKIA 558 (1228)
T ss_pred cCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhh-hccCEEE
Confidence 998874 99999999999999999999999999999999999999999998753 4555555 55555555 5599999
Q ss_pred EEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHH--HHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccc----c
Q 000540 397 LLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL--QEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFH----V 470 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l--~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 470 (1433)
+|++|+||+.|+++|+++. ..-.++.. |+....++. ..+ .+.. .++.....+.+. .
T Consensus 559 v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~--~~~~-----~~~~~~s~~~s~~~~~~ 620 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEE--EESL-----KEERSRSLKSSSSSPSL 620 (1228)
T ss_pred EEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-ccc--ccch-----hhhhhhccccccccccc
Confidence 9999999999999999862 11111211 222221110 000 0000 000000000000 0
Q ss_pred chh-hhhhh--cCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHH-------HHHHHHHHHHhh
Q 000540 471 GQK-ISDEL--QTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLI-------QIASVALVYMTL 540 (1433)
Q Consensus 471 ~~~-~~~~~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~-------~~~~~ali~g~~ 540 (1433)
... ..... ..+.+ ++.... ...+....+++..+ ...+.++...+.-.+ ...+.+.+++.+
T Consensus 621 ~~~~~~~~~~~~~~~~-e~~~~~-~~~~~~~~s~~~i~--------k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~ 690 (1228)
T KOG0055|consen 621 SRGSNRSNLLSVKPEG-EDPEEP-VSEEDEKVSFWRIF--------KLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQV 690 (1228)
T ss_pred cCCccccccccccccc-cccccc-cccccccccHHHHH--------HhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 00000 00000 000000 01111233344433 333344443333322 233334444333
Q ss_pred heecc-CCCCccccccchhHHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHH
Q 000540 541 FFRTK-MHKDSVTDGGIYAGALFFATVMVMFNG--FSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVA 617 (1433)
Q Consensus 541 f~~~~-~~~~~~~~~~~~~g~lf~~~~~~~~~~--~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~ 617 (1433)
+--.. .+.+........+.++|..+....+.. +......+..-..-.|-|... -+.++..+..+++-
T Consensus 691 ~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~---------F~~ll~qd~~wFD~- 760 (1228)
T KOG0055|consen 691 LEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMM---------FRALLRQEVGWFDD- 760 (1228)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHcCCCcccCC-
Confidence 21111 111111111222444444433222111 111111111000001111000 01122222222210
Q ss_pred HHHhhhhhhcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH------HHHHhhccc
Q 000540 618 VWVFLTYYVIGLDPNAGRFFKQYF-----LLLAANQMASALFRLIAATGRNMVVANTFGSFALLV------LFSLGGFVL 686 (1433)
Q Consensus 618 i~~~i~Y~~igl~~~~~~ff~~~l-----~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~------~~l~~Gf~i 686 (1433)
-..+ ++....+. +--++..-...+...++++.-.+.+|..+++-+.++ ++.++++..
T Consensus 761 -----------~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~ 828 (1228)
T KOG0055|consen 761 -----------PENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQ 828 (1228)
T ss_pred -----------Cccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 22222111 000111111222233333333344444444433222 222222221
Q ss_pred cccchhhHHHHHHHHcH---HHHHHHHHHHHhhcCCcccc--cCCC-cccchhhhhhcccCccccchhHHHHHHHHHHHH
Q 000540 687 SREDIKKWWKWAYWCSP---LSYAQNAIVANEFLGHSWKK--FTPN-SIESLGVQVLKSRGFFAHAYWFWLGLGALFGFV 760 (1433)
Q Consensus 687 ~~~~ip~~~~W~~~isp---~~y~~~al~~nef~~~~~~~--~~~~-~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~ 760 (1433)
. +++.-.+. -.|...+.+++|-..+-.+. .+.. .....-.+.++...-.......|.+++.-+...
T Consensus 829 ~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs 900 (1228)
T KOG0055|consen 829 K--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQS 900 (1228)
T ss_pred H--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 01111122222211110000 0000 000000000000000000111222322222222
Q ss_pred HHHHHHHHHHHHhccccCCCccccccccccc----cc-ccccCCccccccCCCCCCcccccccCCcccccccccCCCCCC
Q 000540 761 LLFNLGFTLALTFLNRLEKPRAILTEESESN----EQ-DSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKK 835 (1433)
Q Consensus 761 l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1433)
+.|. .+++++.|-..+-............. .. .........+.|+...+...+...... ....+..+....
T Consensus 901 ~~~~-~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i---~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 901 LLFF-VYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI---LDRKPTIDPDST 976 (1228)
T ss_pred HHHH-HHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH---hcCCCCCCCCCC
Confidence 2221 11222222111111000000000000 00 000000000111111000000000000 000000000111
Q ss_pred CCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEE
Q 000540 836 RGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 915 (1433)
Q Consensus 836 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~ 915 (1433)
.+...+.....|+|+||+++||.. +..+||+|+|+++++|+.+||+|||||||||.+.+|-+..+ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 222234445679999999999864 45679999999999999999999999999999999987665 458
Q ss_pred EEEEEcCccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCcc
Q 000540 916 GNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL-------VELKP 985 (1433)
Q Consensus 916 G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~ 985 (1433)
|.|.|||.+++. ..+|+++|.|.|+|.++. -|++||+.|+. .+.+.++ +.++++. .+|.+
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHHHHHHhhhHHHHhcCcC
Confidence 999999998765 346788999999999874 79999999971 1133332 3344443 25666
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh
Q 000540 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1065 (1433)
Q Consensus 986 ~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~ 1065 (1433)
-.|+.+|..| .+||||||||++||||+++||+||||||.||.||+++.+.|+++|++.. .|+|.|+++|++| ..+.
T Consensus 1115 GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqn 1190 (1228)
T KOG0055|consen 1115 GYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQN 1190 (1228)
T ss_pred cccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhc
Confidence 7888999765 4799999999999999999999999999999999999999999999875 6999999999987 5688
Q ss_pred cCEEEEEecCcEEEEECCC
Q 000540 1066 FDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1066 ~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+|.|.|+++ |++++.|.-
T Consensus 1191 aD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1191 ADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred CCEEEEEEC-CEEEecccH
Confidence 999999996 799999974
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=738.74 Aligned_cols=773 Identities=21% Similarity=0.275 Sum_probs=439.8
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
.+.|+|||++|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|++ |+.+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-WI~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-WIQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-HhhCCcHH
Confidence 34799999999999999999999999999999999999876 99999999 599999976 67789999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
|||.||..+. .+||+.+.++|..++|.++.|++| .|.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CC
Confidence 9999998775 479999999999999999998888 499999988 59
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~-~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||+++|||++++++|++||+|.|++|+++..+|++ |++.+. ++++++.++| ..+..+.+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L---~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL---RGKTVILVTH-QLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh---cCCEEEEEeC-chhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999995 775543 3445555666 5678899999999999999
Q ss_pred EEecCHHHHHH---HHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 404 VYQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 404 v~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
+..|+++|+.+ .|+++ ...++.....+ ...++. ..+..... .+. +..+.. .. .++...
T Consensus 721 ~~~Gty~el~~~~~~~~~l-~~~~~~~~~~~-----~~~~~~-------~~~~~~~~-~~~-~~~~~~---~~-~~~~~~ 781 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-AHEEESEQEEE-----ASEKDL-------ESGESSRE-SES-RSLESL---SS-EEEKSK 781 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-hhccchhhccc-----cccccc-------cccccccc-hhh-hhhhhh---cc-cccccc
Confidence 99999999984 33332 00000000000 000000 00000000 000 000000 00 000000
Q ss_pred Cccccccccc-cccccccCCcH---HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCC------Cc
Q 000540 481 PFDKSKSHRA-ALTTEVYGAGR---RELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHK------DS 550 (1433)
Q Consensus 481 ~~~~~~~~~~-~~~~~~y~~~~---~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~------~~ 550 (1433)
..+..+.... ....+.-.+++ +.+++++..--... ..++.+-..+...++.-++.-||-..... +.
T Consensus 782 ~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~----~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~ 857 (1381)
T KOG0054|consen 782 DEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVL----LILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVST 857 (1381)
T ss_pred cccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 0000000000 00001111111 22222211000000 00111112222223333344444222111 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccC
Q 000540 551 VTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLD 630 (1433)
Q Consensus 551 ~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~ 630 (1433)
.....+|..+.+...+..++.++......+.....++.+ +-+.+.+.|++|+++
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~------------ml~~Ilrapm~FFdt-------------- 911 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDK------------LLNSILRAPMSFFDT-------------- 911 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhCcchhcCC--------------
Confidence 112233444444444444444444433333332223222 345567777777775
Q ss_pred CCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 000540 631 PNAGRFFKQY---------FLLLAANQMASALFRLIAATG----RNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKW 697 (1433)
Q Consensus 631 ~~~~~ff~~~---------l~l~~~~~~~~~l~~~iaa~~----~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W 697 (1433)
.+.||.+.++ .+.+....+...+..+++.+. .++.......++.++..++-.-|.-..+++++.-
T Consensus 912 TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe-- 989 (1381)
T KOG0054|consen 912 TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE-- 989 (1381)
T ss_pred CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--
Confidence 2455555544 111222222222222222221 1111111111111111111111111111111100
Q ss_pred HHHHcHHHHHHHHHHHHhhcCCcccccCCCcccchhhh------hhcccCcc--------ccchhHHHHHHHHHHHHHHH
Q 000540 698 AYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQ------VLKSRGFF--------AHAYWFWLGLGALFGFVLLF 763 (1433)
Q Consensus 698 ~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~------~L~~~~~~--------~~~~~~w~~~g~l~g~~l~f 763 (1433)
..--||+.-.+..-.. | ...+.+.|.+ .....+.. ....|+.+-+-.+-..++.+
T Consensus 990 sitRSPi~sh~~Etl~----G-------lsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQ----G-------LSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred hcccchHHHhHHHHhc----C-------cceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012343322221110 0 0001111110 00000000 11112221111111111111
Q ss_pred HHHHHHHHHhccccCCCcccccccccccccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCC-CCcccCC
Q 000540 764 NLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKK-RGMVLPF 842 (1433)
Q Consensus 764 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 842 (1433)
. .....+.. .....+..+....+++-+-.......++..++.+..+.+.+|..++...+.+ .+...+.. .+..+|
T Consensus 1059 ~-al~~vl~~-~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP- 1134 (1381)
T KOG0054|consen 1059 A-ALFAVLLP-SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWP- 1134 (1381)
T ss_pred H-HHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCC-
Confidence 1 11111111 0000011110000111110111112223333344444455555544433322 11111111 112222
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcC
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1433)
..+.|+|+|++.+|.. +-..||||||++|+|||++||+|++|||||||+++|.+...+ .+|+|.|||
T Consensus 1135 ~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDg 1201 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDG 1201 (1381)
T ss_pred CCCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcC
Confidence 3467999999877642 234799999999999999999999999999999999997763 579999999
Q ss_pred ccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------C
Q 000540 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG------L 993 (1433)
Q Consensus 923 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~ 993 (1433)
.++.+ ..+|++++.+||||.++. -|+|.|| |+..+..++.++++||..+|++...++.+ .
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceec
Confidence 99765 456788999999999875 4777776 45566667789999999999876544332 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+++.++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+..+ ++|||++.|+.+ ....+|||+||+
T Consensus 1271 egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~DrVlVld 1347 (1381)
T KOG0054|consen 1271 EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSDRVLVLD 1347 (1381)
T ss_pred CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcCeEEEee
Confidence 35678999999999999999999999999999999999999999999999764 799999999987 344589999999
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++++|++
T Consensus 1348 ~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1348 A-GRVVEFDSP 1357 (1381)
T ss_pred C-CeEeecCCh
Confidence 7 789999987
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=725.66 Aligned_cols=224 Identities=27% Similarity=0.398 Sum_probs=191.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++..++. +++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4888999877631 125699999999999999999999999999999999998764 479999999886
Q ss_pred cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2235679999999999999999999998776653 233444567889999999999888875 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++..+|||+++|++ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999987 67889999999996 78999998
Q ss_pred CCcccchHHHHHh
Q 000540 1084 LGRHSCHLVSYFE 1096 (1433)
Q Consensus 1084 ~~~~~~~~~~yf~ 1096 (1433)
. +++.+-|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 6 35554443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-68 Score=726.25 Aligned_cols=211 Identities=22% Similarity=0.293 Sum_probs=177.8
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..|+|+||+++|+. +..++|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999998842 123699999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
+++ ..+|+.++||||++.++.. |++|||.+.. .. .++.++++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999998865 9999996531 11 23457788888887543 34455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999885 4899999999986 4566999999997
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=723.52 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=177.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..|+|+||+++|+. +.+++|+|||++|+|||++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 46999999999842 224699999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-------QSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1433)
+++ ..+++.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 4567889999999998875 9999996421 122 34577888888876533 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4899999999985 4566999999996
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 789999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=610.07 Aligned_cols=474 Identities=26% Similarity=0.331 Sum_probs=362.8
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-CCceeEEEECCeeCCCCCc-------cceEEEecCCC-
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1433)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.|+||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999886 4568999999997654432 26799999985
Q ss_pred -CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
.+-|-+||.+.|.-..+.++... ..+...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 45566888888875554432111 22344567889999999987654
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
+++++.|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.+ ..++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCe
Confidence 678999999999999999999999999999999999999999999999999875 5678888999999999999999
Q ss_pred EEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhh
Q 000540 395 IILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKI 474 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1433)
|+||.+|++|+.|+.++++.- |.+ ||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~h-------------------------pYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQH-------------------------PYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cCC-------------------------cccH-----------------HH
Confidence 999999999999999988641 111 1100 00
Q ss_pred hhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccc
Q 000540 475 SDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDG 554 (1433)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 554 (1433)
... .|. .... ..
T Consensus 255 l~a--~p~---------------------------------------------------------------~~~~---~~ 266 (539)
T COG1123 255 LAA--VPR---------------------------------------------------------------LGDE---KI 266 (539)
T ss_pred Hhh--CCC---------------------------------------------------------------cccc---cc
Confidence 000 000 0000 00
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHH
Q 000540 555 GIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAG 634 (1433)
Q Consensus 555 ~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~ 634 (1433)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHH
Q 000540 635 RFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVAN 714 (1433)
Q Consensus 635 ~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 714 (1433)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 000540 715 EFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQD 794 (1433)
Q Consensus 715 ef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 794 (1433)
.+.
T Consensus 267 -----~~~------------------------------------------------------------------------ 269 (539)
T COG1123 267 -----IRL------------------------------------------------------------------------ 269 (539)
T ss_pred -----ccc------------------------------------------------------------------------
Confidence 000
Q ss_pred cccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEE
Q 000540 795 STIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVL 874 (1433)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~i 874 (1433)
.. .. . .+ ...-++.+|++-.+..+..+. .-..+...+
T Consensus 270 ------------------~~------------~~-~---------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~A 306 (539)
T COG1123 270 ------------------PR------------RG-P---------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKA 306 (539)
T ss_pred ------------------cc------------cc-c---------cc-cCceeEeeeeeeeeccccccc--cccccceee
Confidence 00 00 0 00 001234444443333221110 000134579
Q ss_pred eeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC--c---cccccceEEEeecCC--CCCCCC
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK--K---QETFARISGYCEQND--IHSPFV 947 (1433)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~l 947 (1433)
++||||.+++||++||+|+||||||||.++|+|+..+ ..|.|.++|.+. + ....++.+-+++|++ .+.|.+
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 9999999999999999999999999999999998764 479999999762 1 122345677777776 567999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000540 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 948 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPT 1026 (1433)
||++.+.-........ ...++++++.++++.++|.. ..++. +.+||||||||++|||||+.+|++|++||||
T Consensus 385 tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 385 TVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred cHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 9999998765444322 25566778999999999986 45555 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|.||+..+..|.++|+++.++ |.|.|++|||.. -+.+.||||.+|++ |+++..||.
T Consensus 458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999999999999765 999999999987 47788999999996 799999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=692.84 Aligned_cols=217 Identities=18% Similarity=0.278 Sum_probs=178.7
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc------------
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 912 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------------ 912 (1433)
..|+|+||+|+|+.. ++.++|+|+|++|+||+.+||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999998631 1246999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eEEEEEEEcCccCcc---ccccceEEEeecCCCCCCCCCH
Q 000540 913 ----------------------------------------YITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 913 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
+.+|+|.+||.++++ ..+++.+|||+|++.++ ..|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 147999999998754 45678899999999887 5899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-------LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlL 1022 (1433)
+|||.|+. .+.+. +.++++++..++.+ -.|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998852 12233 33667777766544 346777754 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEecC---cE-EEEECCC
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GY-EIYVGPL 1084 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G---g~-~~y~G~~ 1084 (1433)
|||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.||+|++|++| |+ ++..|+-
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 56789999999983 55 5578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=700.83 Aligned_cols=211 Identities=18% Similarity=0.208 Sum_probs=177.8
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 469999999998531 23599999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
+++ ..+++.++||||++.+++. |++|||.... +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 3567889999999999875 9999995210 122 3447888888888653 34555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 5899999999975 4667999999996
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=680.62 Aligned_cols=211 Identities=24% Similarity=0.263 Sum_probs=178.0
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..|+|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 46999999998852 224599999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
+.. ..+++.+|||||++.++.. |++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4567889999999998864 999999531 1222 3458889999888654 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 995 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~-p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999875 4799999999975 567899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=676.06 Aligned_cols=210 Identities=19% Similarity=0.245 Sum_probs=177.6
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..|+|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999852 23469999999999999999999999999999999999864 37999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
+.. ..+++.++||||++.+++. |++|||.... +..++.++++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 3467889999999999875 9999995311 1124458889999988653 3445554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 346799999999999999999999999999999999999999999999875 4799999999975 5567999999987
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 788998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-63 Score=628.03 Aligned_cols=488 Identities=21% Similarity=0.235 Sum_probs=353.8
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCC----------CCC------c-cce
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----------EFV------P-ERT 227 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 227 (1433)
.++|+||||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999987441 111 1 236
Q ss_pred EEEecCCC--CCCCCCCHHHHHHHhhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHH
Q 000540 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1433)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1433)
++||+|++ .+++.+||+||+.++.+.. +.. ..+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------------------------------REEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 99999986 5778899999999976432 110 0112235677899
Q ss_pred HcCCcc---cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000540 305 VLGLDV---CADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL 381 (1433)
Q Consensus 305 ~lgL~~---~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i 381 (1433)
.+||++ ..+ +.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+. .+++|+++
T Consensus 152 ~~gL~~~~~~~~-----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILS-----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFI 225 (623)
T ss_pred HCCCCChhhHHh-----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 999964 234 445679999999999999999999999999999999999999999999987653 35667889
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHH
Q 000540 382 LQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEF 461 (1433)
Q Consensus 382 ~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1433)
+|+...+.++||+|++|++|++++.|+++++.+ .|.+....+++.
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~--------------------------- 270 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLA--------------------------- 270 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhh---------------------------
Confidence 999999999999999999999999998876521 000000000000
Q ss_pred HHHHhccccchhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Q 000540 462 TEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLF 541 (1433)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f 541 (1433)
. . +
T Consensus 271 --~-------------~--~------------------------------------------------------------ 273 (623)
T PRK10261 271 --A-------------V--P------------------------------------------------------------ 273 (623)
T ss_pred --c-------------c--C------------------------------------------------------------
Confidence 0 0 0
Q ss_pred eeccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHh
Q 000540 542 FRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621 (1433)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1433)
.... .. +
T Consensus 274 ---~~~~--~~-~------------------------------------------------------------------- 280 (623)
T PRK10261 274 ---QLGA--MK-G------------------------------------------------------------------- 280 (623)
T ss_pred ---cccc--cc-c-------------------------------------------------------------------
Confidence 0000 00 0
Q ss_pred hhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 000540 622 LTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWC 701 (1433)
Q Consensus 622 i~Y~~igl~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 701 (1433)
T Consensus 281 -------------------------------------------------------------------------------- 280 (623)
T PRK10261 281 -------------------------------------------------------------------------------- 280 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 000540 702 SPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPR 781 (1433)
Q Consensus 702 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~ 781 (1433)
..... .. ....
T Consensus 281 -----------------~~~~~----~~------------------------------------------------~~~~ 291 (623)
T PRK10261 281 -----------------LDYPR----RF------------------------------------------------PLIS 291 (623)
T ss_pred -----------------ccCCc----cc------------------------------------------------cccc
Confidence 00000 00 0000
Q ss_pred ccccccccccccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccc
Q 000540 782 AILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQ 861 (1433)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 861 (1433)
. . .. .. .. ... . . ..... ....++++|+++.++....
T Consensus 292 ~----~-~~----~~-~~-------------~~~-----------~--~-~~~~~------~~~~L~~~~l~~~y~~~~~ 328 (623)
T PRK10261 292 L----E-HP----AK-QE-------------PPI-----------E--Q-DTVVD------GEPILQVRNLVTRFPLRSG 328 (623)
T ss_pred c----c-cc----cc-cC-------------ccc-----------c--c-ccccC------CCceEEEeeeEEEEcCCCc
Confidence 0 0 00 00 00 000 0 0 00000 0113788888877642100
Q ss_pred hhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc------cccceEE
Q 000540 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE------TFARISG 935 (1433)
Q Consensus 862 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~g 935 (1433)
. ... ..+.+.+|+||||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++... .+++.++
T Consensus 329 ~-~~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~ 404 (623)
T PRK10261 329 L-LNR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQ 404 (623)
T ss_pred c-ccc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeE
Confidence 0 000 00124699999999999999999999999999999999998653 479999999865321 2345799
Q ss_pred EeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHH
Q 000540 936 YCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVE 1012 (1433)
Q Consensus 936 yv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~a 1012 (1433)
|++|++ .+++.+||.|++.+....+. .....+.++.+.++++.+||. +..++.+ ..|||||||||+||||
T Consensus 405 ~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAra 477 (623)
T PRK10261 405 FIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARA 477 (623)
T ss_pred EEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHH
Confidence 999997 57889999999987644321 112334456788999999996 4566653 5799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1013 L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+.||++++|++ |++++.|+..
T Consensus 478 L~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 478 LALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999999765 899999999987 57788999999987 6889999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=619.08 Aligned_cols=459 Identities=21% Similarity=0.278 Sum_probs=347.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ ..+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 35999999999999999999999999999999999999861 128999999998865432 3569999999888899
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++......+.. + ..+...+++++++.+||++..+..+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIM--------------------D-----------YDAMYLRAQKLLAQLKLDINPATPV---- 141 (506)
T ss_pred CcHHHHhhhcccccccCCc--------------------C-----------HHHHHHHHHHHHHHcCCCCCcccch----
Confidence 9999999987532100000 0 0011234677899999987776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +.++++++|+..++.++||+|++|++
T Consensus 142 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 142 -GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 3 56777789999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|++++.|+.+++.. .+..
T Consensus 219 G~i~~~~~~~~~~~--------------------------------------------~~~~------------------ 236 (506)
T PRK13549 219 GRHIGTRPAAGMTE--------------------------------------------DDII------------------ 236 (506)
T ss_pred CEEeeecccccCCH--------------------------------------------HHHH------------------
Confidence 99998876442200 0000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
+. +. + ..
T Consensus 237 ------------------------------~~----------------------------~~--~--~~----------- 243 (506)
T PRK13549 237 ------------------------------TM----------------------------MV--G--RE----------- 243 (506)
T ss_pred ------------------------------HH----------------------------hh--C--cC-----------
Confidence 00 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
. . . .. +
T Consensus 244 --~--~-------------------~--------------------------~~-~------------------------ 249 (506)
T PRK13549 244 --L--T-------------------A--------------------------LY-P------------------------ 249 (506)
T ss_pred --c--c-------------------c--------------------------cc-c------------------------
Confidence 0 0 0 00 0
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
.. . . .. ....++++|+++.++. .+++.+|+|||+
T Consensus 250 ------------~~------------~--~--~~--------~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl 283 (506)
T PRK13549 250 ------------RE------------P--H--TI--------GEVILEVRNLTAWDPV----------NPHIKRVDDVSF 283 (506)
T ss_pred ------------cc------------c--c--CC--------CCceEEEecCcccccc----------ccccccccceee
Confidence 00 0 0 00 0012556666654320 012358999999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l 953 (1433)
+|++||+++|+||||||||||+++|+|..++ +.+|+|.++|.+.... ..++.+||++|++ .+++.+||.||+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 9999999999999999999999999997541 1379999999765321 1234689999985 467889999999
Q ss_pred HHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000540 954 LYSAWLRLPP--EIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1433)
Q Consensus 954 ~f~a~lr~~~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD 1030 (1433)
.+........ ..+....++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 8753211110 012233445688999999996 4666664 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 99999999999999888999999999986 57789999999997 6788888764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=619.65 Aligned_cols=458 Identities=21% Similarity=0.281 Sum_probs=346.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35999999999999999999999999999999999999987 9999999998865432 2469999999888899
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++...... .+.. +.. ...+...+++++++.+||.+..++.+
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~--------------~~~-----------~~~~~~~~~~~~l~~~gl~~~~~~~~---- 143 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV--------------NII-----------DWREMRVRAAMMLLRVGLKVDLDEKV---- 143 (510)
T ss_pred CcHHHHhhhccccccc--cccc--------------ccc-----------CHHHHHHHHHHHHHHcCCCCCcccch----
Confidence 9999999875421000 0000 000 00112235677899999987777555
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|++++|+..++.++||+|++|++
T Consensus 144 -~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 144 -ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 3 56677789999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|++++.|+++++.. . +..+.
T Consensus 221 G~i~~~g~~~~~~~----------------------------~----------------~~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN----------------------------D----------------DIVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH----------------------------H----------------HHHHH----------------
Confidence 99999887654310 0 00000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
+. + .. ..
T Consensus 241 ------------------------------------------------------------~~--~--~~-~~-------- 247 (510)
T PRK09700 241 ------------------------------------------------------------MV--G--RE-LQ-------- 247 (510)
T ss_pred ------------------------------------------------------------hc--C--CC-cc--------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
.. . ...
T Consensus 251 -~~-----------------------------------------------------~-~~~------------------- 256 (510)
T PRK09700 251 -NA-----------------------------------------------------M-KEN------------------- 256 (510)
T ss_pred -cc-----------------------------------------------------c-ccc-------------------
Confidence 00 0 000
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
. . . .. .+..++++|++..+ ..+|+|+|+
T Consensus 257 ------------~-------------~--~--~~--------~~~~l~~~~l~~~~---------------~~~l~~isl 284 (510)
T PRK09700 257 ------------V-------------S--N--LA--------HETVFEVRNVTSRD---------------RKKVRDISF 284 (510)
T ss_pred ------------c-------------c--c--CC--------CCcEEEEeCccccC---------------CCcccceeE
Confidence 0 0 0 00 00135666665321 137999999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecC---CCCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~lTv~E~l 953 (1433)
++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|+ ..+++.+||+|++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHh
Confidence 9999999999999999999999999997653 479999999765321 224568999998 4578889999999
Q ss_pred HHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000540 954 LYSAWLR---LPP--E-IDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 954 ~f~a~lr---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPT 1026 (1433)
.+....+ ... . ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 363 AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred ccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 8753211 000 0 11222335578999999996 6677664 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+|||+.++..+++.|++++++|.|||++|||+. .+.+.||++++|++ |+++..++.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999999999877999999999986 57789999999997 577887764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=615.45 Aligned_cols=449 Identities=20% Similarity=0.309 Sum_probs=344.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 35999999999999999999999999999999999999988 9999999998754321 3469999999888999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.|+.......... + ..+.+.+++++++.+||++..+..+
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 139 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI-------------------D-----------WKKMYAEADKLLARLNLRFSSDKLV---- 139 (501)
T ss_pred CcHHHHhhhccccccccCcc-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCch----
Confidence 99999999864321000000 0 0011234677899999988777554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . ++++++++|+..++.++||+|++|++
T Consensus 140 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 140 -GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998753 3 56677889999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|+++..|+.+++.. ++..+.
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 236 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEM---------------- 236 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHH----------------
Confidence 99998775432100 000000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
++ . ..
T Consensus 237 ------------------------------------------------------------~~--~--~~----------- 241 (501)
T PRK10762 237 ------------------------------------------------------------MV--G--RK----------- 241 (501)
T ss_pred ------------------------------------------------------------hc--C--CC-----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
.
T Consensus 242 --------------------------------------------------~----------------------------- 242 (501)
T PRK10762 242 --------------------------------------------------L----------------------------- 242 (501)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
.. . .+
T Consensus 243 -~~----------------------------------------------------~--~~-------------------- 247 (501)
T PRK10762 243 -ED----------------------------------------------------Q--YP-------------------- 247 (501)
T ss_pred -cc----------------------------------------------------c--cc--------------------
Confidence 00 0 00
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
.. .. . + .+..++++|++. .+|+|+|+
T Consensus 248 ------------~~------------~~----~-------~-~~~~l~~~~l~~------------------~~l~~vsl 273 (501)
T PRK10762 248 ------------RL------------DK----A-------P-GEVRLKVDNLSG------------------PGVNDVSF 273 (501)
T ss_pred ------------cc------------cc----C-------C-CCcEEEEeCccc------------------CCcccceE
Confidence 00 00 0 0 001245555541 26999999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l 953 (1433)
++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+||++|++ .+++.+||.|++
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 351 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM 351 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence 9999999999999999999999999998653 479999999775321 1245689999995 467889999999
Q ss_pred HHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 954 LYSAWLRLP---PEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 954 ~f~a~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
.+....... ......+.++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 875321100 0012233345688999999995 5667664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++ |++++.|+..
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999878999999999987 57789999999986 6888888764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=615.54 Aligned_cols=463 Identities=22% Similarity=0.293 Sum_probs=346.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCCCc-------cceEEEecCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 0138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-
Q 000540 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC- 311 (1433)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 311 (1433)
. +.+.+||+|++.+..... +.. ..+...+++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 3 566789999988653211 110 01123456788999999752
Q ss_pred --ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHH
Q 000540 312 --ADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETY 389 (1433)
Q Consensus 312 --~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~ 389 (1433)
.+. .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.+|++++|+...+.
T Consensus 148 ~~~~~-----~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTD-----YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhh-----CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 343 44579999999999999999999999999999999999999999999987643 3566777899999999
Q ss_pred hhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccc
Q 000540 390 NLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFH 469 (1433)
Q Consensus 390 ~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1433)
++||+|++|++|++++.|+++++.+. |.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------------------------- 249 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------------------------- 249 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC--------------------------------------------
Confidence 99999999999999999987654210 00
Q ss_pred cchhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCC
Q 000540 470 VGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKD 549 (1433)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~ 549 (1433)
+. + . +.+ + .. .
T Consensus 250 ------------------~~-------~-------~-----~~~----------------------------~--~~--~ 260 (529)
T PRK15134 250 ------------------HP-------Y-------T-----QKL----------------------------L--NS--E 260 (529)
T ss_pred ------------------CH-------H-------H-----HHH----------------------------H--Hh--C
Confidence 00 0 0 000 0 00 0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 000540 550 SVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGL 629 (1433)
Q Consensus 550 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl 629 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHH
Q 000540 630 DPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQN 709 (1433)
Q Consensus 630 ~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 709 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccc
Q 000540 710 AIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESE 789 (1433)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 789 (1433)
+. . .+
T Consensus 261 ----------------~~-----~-----------------------------------------~~------------- 265 (529)
T PRK15134 261 ----------------PS-----G-----------------------------------------DP------------- 265 (529)
T ss_pred ----------------cc-----c-----------------------------------------cc-------------
Confidence 00 0 00
Q ss_pred ccccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccc-hhhcccc
Q 000540 790 SNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQ-MKLQGVS 868 (1433)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~-~~~~~~~ 868 (1433)
.. . ... .+..++++|+++.++.... .+ + .
T Consensus 266 -----------------------~~------------~------~~~------~~~~l~~~~l~~~~~~~~~~~~--~-~ 295 (529)
T PRK15134 266 -----------------------VP------------L------PEP------ASPLLDVEQLQVAFPIRKGILK--R-T 295 (529)
T ss_pred -----------------------cc------------c------CCC------CCCcccccCcEEEeecCccccc--c-c
Confidence 00 0 000 0002455666655531000 00 0 0
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc------cccceEEEeecCC-
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE------TFARISGYCEQND- 941 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~- 941 (1433)
.+.+.+|+|||+++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|++
T Consensus 296 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~ 372 (529)
T PRK15134 296 VDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN 372 (529)
T ss_pred cccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCch
Confidence 012469999999999999999999999999999999999763 379999999765321 1245689999996
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCe
Q 000540 942 -IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019 (1433)
Q Consensus 942 -~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~i 1019 (1433)
.+++.+||.|++.+....+.. .....+.++.+.++++.++|. +..++.+ ..|||||||||+||++|+.+|++
T Consensus 373 ~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 446 (529)
T PRK15134 373 SSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSL 446 (529)
T ss_pred hhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCE
Confidence 477889999999886543211 122334456688999999997 4566653 56999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1020 LlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++ |+++..|+.
T Consensus 447 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred EEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999865 899999999986 57788999999997 688888875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=610.13 Aligned_cols=453 Identities=19% Similarity=0.241 Sum_probs=342.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999988 9999999998765432 2469999999889999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.|+.... + +...+++++++.+||++..+..+
T Consensus 101 ~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~---- 138 (510)
T PRK15439 101 LSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSA---- 138 (510)
T ss_pred CcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCCh----
Confidence 99999998853100 0 01123567889999987777554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +.+|++++|+..++.++||+|++|++
T Consensus 139 -~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 139 -GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 3 56778889999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|++++.|+++++... + ..+.+.
T Consensus 216 G~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~-------------- 237 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------D-----------------------------IIQAIT-------------- 237 (510)
T ss_pred CEEEEecChHHcCHH---------------H-----------------------------HHHHHh--------------
Confidence 999999987654210 0 000000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
...... ..
T Consensus 238 ----------------------------------------------------------------~~~~~~--~~------ 245 (510)
T PRK15439 238 ----------------------------------------------------------------PAAREK--SL------ 245 (510)
T ss_pred ----------------------------------------------------------------Cccccc--cc------
Confidence 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK15439 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
.. .. .
T Consensus 246 ----------------------------------------------~~--~~---------------------------~ 250 (510)
T PRK15439 246 ----------------------------------------------SA--SQ---------------------------K 250 (510)
T ss_pred ----------------------------------------------cc--cc---------------------------c
Confidence 00 00 0
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
.. ..+ +
T Consensus 251 ~~-----------------~~~---------------------------------~------------------------ 256 (510)
T PRK15439 251 LW-----------------LEL---------------------------------P------------------------ 256 (510)
T ss_pred cc-----------------ccc---------------------------------c------------------------
Confidence 00 000 0
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
.. .. . ... .+.-++++|++. .+|+|||+
T Consensus 257 ------------~~------------~~-~-~~~--------~~~~l~~~~l~~------------------~~l~~isl 284 (510)
T PRK15439 257 ------------GN------------RR-Q-QAA--------GAPVLTVEDLTG------------------EGFRNISL 284 (510)
T ss_pred ------------cc------------cc-c-cCC--------CCceEEEeCCCC------------------CCccceeE
Confidence 00 00 0 000 011255566541 15899999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l 953 (1433)
++++|+++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 9999999999999999999999999997653 379999999865321 1234689999984 477889999998
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 000540 954 LYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1433)
Q Consensus 954 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~ 1032 (1433)
......+..........++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 363 CALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 6421111111011222345678999999997 6667664 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1033 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
+++.+++.|++++++|.|||++||++. .+.+.||++++|++ |++++.|..+
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999878999999999987 57889999999986 6888877654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-62 Score=610.36 Aligned_cols=445 Identities=23% Similarity=0.322 Sum_probs=341.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEECC-----------------------eeC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNG-----------------------HNM 219 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~ 219 (1433)
+.+|+|+|+++.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999996 576 89999972 221
Q ss_pred C-------CC------CccceEEEecCC-CCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHH
Q 000540 220 D-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285 (1433)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 285 (1433)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~---------------------------- 141 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE---------------------------- 141 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------------------------
Confidence 1 00 013469999997 57788899999999865432210
Q ss_pred HHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH
Q 000540 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1433)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~ 365 (1433)
..+...+++++++.+||++..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.
T Consensus 142 ------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 142 ------GKEAVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ------HHHHHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 001223467789999998766644 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhh
Q 000540 366 FKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQY 445 (1433)
Q Consensus 366 l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~ 445 (1433)
|+++++.. +.+|++++|+...+.++||+|++|++|++++.|+++++.+.+..
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------------------- 262 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------------------- 262 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------------------
Confidence 99876533 56678889999999999999999999999988766543110000
Q ss_pred hhccCCCCccCCHHHHHHHHhccccchhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHH
Q 000540 446 WVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIF 525 (1433)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~ 525 (1433)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhheeccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHH
Q 000540 526 KLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605 (1433)
Q Consensus 526 ~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~ 605 (1433)
... .
T Consensus 263 -------------------~~~-~-------------------------------------------------------- 266 (520)
T TIGR03269 263 -------------------GVS-E-------------------------------------------------------- 266 (520)
T ss_pred -------------------hch-h--------------------------------------------------------
Confidence 000 0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhcc
Q 000540 606 ILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFV 685 (1433)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~ 685 (1433)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHH
Q 000540 686 LSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNL 765 (1433)
Q Consensus 686 i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~ 765 (1433)
+
T Consensus 267 -----~-------------------------------------------------------------------------- 267 (520)
T TIGR03269 267 -----V-------------------------------------------------------------------------- 267 (520)
T ss_pred -----h--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhccccCCCcccccccccccccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCc
Q 000540 766 GFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPH 845 (1433)
Q Consensus 766 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1433)
.+.. . . . . ...
T Consensus 268 ------------~~~~-----------------~-------------~-------------~------~--------~~~ 278 (520)
T TIGR03269 268 ------------EKEC-----------------E-------------V-------------E------V--------GEP 278 (520)
T ss_pred ------------cccc-----------------c-------------c-------------C------C--------CCc
Confidence 0000 0 0 0 0 001
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEc-Ccc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVS-GYP 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~ 924 (1433)
.++++|+++.++.. ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCc
Confidence 25677777665310 01224699999999999999999999999999999999998653 47999996 532
Q ss_pred ---Ccc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccc
Q 000540 925 ---KKQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-----LKQSL 990 (1433)
Q Consensus 925 ---~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~ 990 (1433)
... ...++.+||++|++.+++.+||.|++.+...+. ......++.+.++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 112456899999988889999999998754321 122333456788999999975 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v 1069 (1433)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++. .+.+.||++
T Consensus 425 -----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 -----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999987 577889999
Q ss_pred EEEecCcEEEEECCC
Q 000540 1070 FLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1070 ~~L~~Gg~~~y~G~~ 1084 (1433)
++|++ |+++..|+.
T Consensus 499 ~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMRD-GKIVKIGDP 512 (520)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 678888874
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=606.19 Aligned_cols=460 Identities=19% Similarity=0.263 Sum_probs=343.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 35999999999999999999999999999999999998761 128999999998865432 2469999999888999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++......+... ...+...+++.+++.+||.+..+ +..
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~l~~~~~----~~~ 138 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRM------------------------------AYNAMYLRAKNLLRELQLDADNV----TRP 138 (500)
T ss_pred CcHHHHHHhhcccccccccc------------------------------CHHHHHHHHHHHHHHcCCCCCcc----cCc
Confidence 99999998864321000000 00011234677899999976542 123
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.. . +++|++++|+..++.++||+|++|++
T Consensus 139 ~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l~~ 216 (500)
T TIGR02633 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVIRD 216 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 457999999999999999999999999999999999999999999998753 3 56778889999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|++++.|+.+++.. ...
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~------------------- 233 (500)
T TIGR02633 217 GQHVATKDMSTMSE--------------------------------------------DDI------------------- 233 (500)
T ss_pred CeEeeecCcccCCH--------------------------------------------HHH-------------------
Confidence 99987654321000 000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
. .. +. + ..
T Consensus 234 ------------------------~-----~~----------------------------~~--~--~~----------- 241 (500)
T TIGR02633 234 ------------------------I-----TM----------------------------MV--G--RE----------- 241 (500)
T ss_pred ------------------------H-----HH----------------------------Hh--C--cc-----------
Confidence 0 00 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
.+
T Consensus 242 --------------------------------------------------~~---------------------------- 243 (500)
T TIGR02633 242 --------------------------------------------------IT---------------------------- 243 (500)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
. . . +
T Consensus 244 --~------------------~-------------------------------~-~------------------------ 247 (500)
T TIGR02633 244 --S------------------L-------------------------------Y-P------------------------ 247 (500)
T ss_pred --c------------------c-------------------------------c-c------------------------
Confidence 0 0 0 0
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
.. .. +. .+..++++|+++.+.. .+++.+|+|+|+
T Consensus 248 ------------~~------------~~----~~--------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~ 281 (500)
T TIGR02633 248 ------------HE------------PH----EI--------GDVILEARNLTCWDVI----------NPHRKRVDDVSF 281 (500)
T ss_pred ------------cc------------cc----CC--------CCceEEEeCCcccccc----------ccccccccccee
Confidence 00 00 00 0012556666544310 012358999999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc----ccccceEEEeecCC---CCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l 953 (1433)
++++||+++|+|||||||||||++|+|..++ ..+|+|.++|.+... ...++.+||++|+. .+++.+||+|++
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 9999999999999999999999999998642 137999999987532 12345689999995 578899999999
Q ss_pred HHHHH--hcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000540 954 LYSAW--LRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1433)
Q Consensus 954 ~f~a~--lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD 1030 (1433)
.+... ............++.++++++.+++.+ ..++.+ ..||||||||++||++|+.+|++|||||||+|||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 87532 110001122334456889999999964 456654 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++.
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 99999999999999888999999999987 57789999999987 577776654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=604.84 Aligned_cols=451 Identities=21% Similarity=0.303 Sum_probs=341.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999987 9999999998754321 3579999999888899
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++......+. . + ..+...+++.+++.+||++..+..
T Consensus 94 ~tv~~~l~~~~~~~~~~~----~----------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~----- 137 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI----V----------------N-----------RRLLNYEAREQLEHLGVDIDPDTP----- 137 (501)
T ss_pred CCHHHHHHhcccccccCC----C----------------C-----------HHHHHHHHHHHHHHcCCCCCcCCc-----
Confidence 999999998632100000 0 0 001123466789999998666644
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.++||+|++|++
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 446999999999999999999999999999999999999999999998753 3 56777889999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhcC
Q 000540 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQT 480 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1433)
|+++..++..+. .+.++.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~------------------- 233 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQL------------------- 233 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHH-------------------
Confidence 999854421000 000000
Q ss_pred CccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhHH
Q 000540 481 PFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1433)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1433)
. .. +. . .. .
T Consensus 234 ------------------------~-----~~----------------------------~~--~--~~-~--------- 242 (501)
T PRK11288 234 ------------------------V-----QA----------------------------MV--G--RE-I--------- 242 (501)
T ss_pred ------------------------H-----HH----------------------------hc--C--CC-c---------
Confidence 0 00 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHHH
Q 000540 561 LFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQY 640 (1433)
Q Consensus 561 lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~~ 640 (1433)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCCc
Q 000540 641 FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHS 720 (1433)
Q Consensus 641 l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 720 (1433)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCCc
Q 000540 721 WKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGT 800 (1433)
Q Consensus 721 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1433)
.. . ..
T Consensus 243 -~~----------------------~----------------------------~~------------------------ 247 (501)
T PRK11288 243 -GD----------------------I----------------------------YG------------------------ 247 (501)
T ss_pred -cc----------------------c----------------------------cc------------------------
Confidence 00 0 00
Q ss_pred cccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEE
Q 000540 801 VQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880 (1433)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 880 (1433)
.. .. . ..+..++++|+++ ..+++|+|+
T Consensus 248 ------------~~------------~~----~--------~~~~~l~~~~~~~-----------------~~~l~~isl 274 (501)
T PRK11288 248 ------------YR------------PR----P--------LGEVRLRLDGLKG-----------------PGLREPISF 274 (501)
T ss_pred ------------cc------------cc----C--------CCCcEEEEecccc-----------------CCcccceeE
Confidence 00 00 0 0011355566542 137999999
Q ss_pred EEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc----ccccceEEEeecCC---CCCCCCCHHHHH
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESL 953 (1433)
Q Consensus 881 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l 953 (1433)
++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l 352 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI 352 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHh
Confidence 9999999999999999999999999997653 47999999976532 11235689999986 478889999999
Q ss_pred HHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 954 LYSAWLRL-PPE--IDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 954 ~f~a~lr~-~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
.+...... +.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred ccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 87532111 000 11223345678999999994 5667664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCc
Q 000540 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGR 1086 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~ 1086 (1433)
|+.++..+++.|++++++|.|||++|||+. ++.+.||++++|++ |++++.|..+.
T Consensus 428 D~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 999999999999999888999999999987 57889999999986 67888887753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=594.32 Aligned_cols=449 Identities=18% Similarity=0.275 Sum_probs=339.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 45999999999999999999999999999999999999988 9999999998754322 3569999999888899
Q ss_pred CCHHHHHHHhhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
+||+||+.++.. ..+.... ..+....++.+++.+|+++..++.+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------------------------------QDKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhcccccccccccC--------------------------------HHHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987532 1110000 0011234677889999987666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++.. . +.++++++|+..++.++||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998753 3 5667778999999999999999999
Q ss_pred CCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhc
Q 000540 400 NGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQ 479 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1433)
+|+++..|+++++.. .+..+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~---------------- 228 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIA---------------- 228 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHH----------------
Confidence 999998776542100 00000
Q ss_pred CCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhH
Q 000540 480 TPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAG 559 (1433)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g 559 (1433)
. + . + ..
T Consensus 229 --------------------------------~---~-------------------------~--~--~~---------- 234 (491)
T PRK10982 229 --------------------------------M---M-------------------------V--G--RS---------- 234 (491)
T ss_pred --------------------------------H---H-------------------------h--C--CC----------
Confidence 0 0 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHH
Q 000540 560 ALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQ 639 (1433)
Q Consensus 560 ~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~ 639 (1433)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000540 640 YFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGH 719 (1433)
Q Consensus 640 ~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1433)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCC
Q 000540 720 SWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGG 799 (1433)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1433)
. ... +
T Consensus 236 ---~---------------------------------------------------~~~--~------------------- 240 (491)
T PRK10982 236 ---T---------------------------------------------------QRF--P------------------- 240 (491)
T ss_pred ---c---------------------------------------------------ccc--c-------------------
Confidence 0 000 0
Q ss_pred ccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeE
Q 000540 800 TVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVS 879 (1433)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1433)
.. .. . + .+..++++|+++.. +.+|+|||
T Consensus 241 -------------~~------------~~----~-------~-~~~~i~~~~l~~~~---------------~~~l~~vs 268 (491)
T PRK10982 241 -------------DK------------EN----K-------P-GEVILEVRNLTSLR---------------QPSIRDVS 268 (491)
T ss_pred -------------cc------------cC----C-------C-CCcEEEEeCccccc---------------Ccccceee
Confidence 00 00 0 0 01136667776531 24899999
Q ss_pred EEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCCCCHHHH
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPFVTVYES 952 (1433)
Q Consensus 880 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~ 952 (1433)
+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.+|+.++
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 99999999999999999999999999997653 479999999775421 1234589999985 35788888877
Q ss_pred HHHHHH--hcCCCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 953 LLYSAW--LRLPPE-IDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 953 l~f~a~--lr~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
..+... ...... ......++.+.++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 433210 000001 12223345678899999985 4456553 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..++.
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999888999999999987 57789999999987 677766654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=585.68 Aligned_cols=446 Identities=19% Similarity=0.250 Sum_probs=328.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCC--C--
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNH--I-- 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 238 (1433)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4899999999999999999999999999999999999987 9999999977643221 2458999997532 1
Q ss_pred ----CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 239 ----GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
..+||+|++.++. +...+++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1457777664310 011235677899999877765
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.+ ..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ . +.++++++|+...+.+.||+
T Consensus 132 ~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RF-----KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCE
Confidence 54 46999999999999999999999999999999999999999999998754 3 55677788999999999999
Q ss_pred EEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhh
Q 000540 395 IILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKI 474 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1433)
|++|++|+++..|+++++.+- +.+..
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~~--------------------------------------- 230 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVAQ--------------------------------------- 230 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhhh---------------------------------------
Confidence 999999999998887654210 00000
Q ss_pred hhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccc
Q 000540 475 SDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDG 554 (1433)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 554 (1433)
. ..+ + ....
T Consensus 231 ---~------------------------------~~~------~--------------------------~~~~------ 239 (490)
T PRK10938 231 ---L------------------------------AHS------E--------------------------QLEG------ 239 (490)
T ss_pred ---h------------------------------hhh------h--------------------------ccCc------
Confidence 0 000 0 0000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHH
Q 000540 555 GIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAG 634 (1433)
Q Consensus 555 ~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~ 634 (1433)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHH
Q 000540 635 RFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVAN 714 (1433)
Q Consensus 635 ~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 714 (1433)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 000540 715 EFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQD 794 (1433)
Q Consensus 715 ef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 794 (1433)
. .. +. . . +
T Consensus 240 ----~--~~--~~----------------------------------------------------~---------~-~-- 247 (490)
T PRK10938 240 ----V--QL--PE----------------------------------------------------P---------D-E-- 247 (490)
T ss_pred ----c--cc--Cc----------------------------------------------------c---------c-c--
Confidence 0 00 00 0 0 0
Q ss_pred cccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEE
Q 000540 795 STIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVL 874 (1433)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~i 874 (1433)
. .. . .. .. .....++++|+++.++ ++.+
T Consensus 248 ----~-------------~~----------~-~~----~~-------~~~~~l~~~~l~~~~~-------------~~~i 275 (490)
T PRK10938 248 ----P-------------SA----------R-HA----LP-------ANEPRIVLNNGVVSYN-------------DRPI 275 (490)
T ss_pred ----c-------------cc----------c-cc----cC-------CCCceEEEeceEEEEC-------------CeeE
Confidence 0 00 0 00 00 0011378888887763 2469
Q ss_pred eeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc----ccccceEEEeecCCCCCCC--CC
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ----ETFARISGYCEQNDIHSPF--VT 948 (1433)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~--lT 948 (1433)
|+|+|+++++||+++|+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+.+. .|
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 9999999999999999999999999999999996431 137999999976421 1134568999998765433 56
Q ss_pred HHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000540 949 VYESLLYSAWL--RLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1433)
Q Consensus 949 v~E~l~f~a~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEP 1025 (1433)
+++++.+.... ....... ...++.++++++.++|.+ ..++.+ ..|||||||||+||++|+.+|++||||||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred HHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 77766543211 1111112 223456889999999987 667654 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHH-hcCEEEEEecCcEEEEE
Q 000540 1026 TSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~Gg~~~y~ 1081 (1433)
|+|||+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++| ++++.
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G-~i~~~ 484 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDG-DIYRY 484 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCC-ceEEe
Confidence 99999999999999999998765 46999999986 4555 58999999975 54443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=514.58 Aligned_cols=470 Identities=25% Similarity=0.336 Sum_probs=365.1
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCCCcc-------ceEEEecC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFVPE-------RTAAYISQ 233 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 233 (1433)
....++++|||.|++||.+||+|.||||||-..+.+.|+++.. ..-+|+|.|+|.++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3456999999999999999999999999999999999998762 35589999999997544321 37999999
Q ss_pred CC--CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000540 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1433)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1433)
++ .+-|-.|+..-+.-..++... ..+..++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 96 345556777766655544310 1122345567788999999876
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 000540 312 ADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL 391 (1433)
Q Consensus 312 ~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1433)
...+ +.++.+|||||||||.||.||+.+|++||-||||++||.....+|++.|+++-. ..+..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHh
Confidence 5433 468889999999999999999999999999999999999999999999999765 4578888899999999999
Q ss_pred cCeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccc
Q 000540 392 FDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVG 471 (1433)
Q Consensus 392 ~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1433)
+|+|+||.+|+++++|+.+.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999999887632 1111 000
Q ss_pred hhhhhhhcCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCcc
Q 000540 472 QKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSV 551 (1433)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~ 551 (1433)
|.++. ..
T Consensus 255 ---------------------------------------r~Ll~------------------------------ae---- 261 (534)
T COG4172 255 ---------------------------------------RKLLA------------------------------AE---- 261 (534)
T ss_pred ---------------------------------------HHHHh------------------------------cC----
Confidence 00000 00
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCC
Q 000540 552 TDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDP 631 (1433)
Q Consensus 552 ~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~ 631 (1433)
T Consensus 262 -------------------------------------------------------------------------------- 261 (534)
T COG4172 262 -------------------------------------------------------------------------------- 261 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHH
Q 000540 632 NAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAI 711 (1433)
Q Consensus 632 ~~~~ff~~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1433)
T Consensus 262 -------------------------------------------------------------------------------- 261 (534)
T COG4172 262 -------------------------------------------------------------------------------- 261 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccc
Q 000540 712 VANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESN 791 (1433)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 791 (1433)
|. | .+
T Consensus 262 --------------P~-----g---------------------------------------------~~----------- 266 (534)
T COG4172 262 --------------PS-----G---------------------------------------------DP----------- 266 (534)
T ss_pred --------------CC-----C---------------------------------------------CC-----------
Confidence 00 0 00
Q ss_pred ccccccCCccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCc
Q 000540 792 EQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDK 871 (1433)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~ 871 (1433)
. + ..+..|..++.+|+...++.+..+-.. ..+.
T Consensus 267 -----------------------~--------------p--------~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~ 299 (534)
T COG4172 267 -----------------------P--------------P--------LPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDH 299 (534)
T ss_pred -----------------------C--------------C--------CCCCCCceEEecceEEEEecCCccccc--cchh
Confidence 0 0 000012234555555444433211100 1134
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc------ccccceEEEeecCCC--C
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ------ETFARISGYCEQNDI--H 943 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~--~ 943 (1433)
..++++||+++++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ...++.+-.|+||+. +
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 5799999999999999999999999999999999997753 4999999988653 235677899999984 6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000540 944 SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1433)
Q Consensus 944 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlL 1022 (1433)
.|.+||.|-+.=+.....+ ..+..++++++.++|+.+||++- +++. +.++|||||||++|||||+-+|++++|
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 7999999999877666554 46788899999999999999873 3443 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|||||.||-.-+.+|+++|+++.+ .|.+-++++||.. -+-.+||+|+||++ |++++.||.
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999999999999965 4999999999986 47778999999996 799999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=570.03 Aligned_cols=201 Identities=21% Similarity=0.299 Sum_probs=163.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 488899987753 34699999999999999999999999999999999997653 479999853 1
Q ss_pred ccccccceEEEeecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000540 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1003 (1433)
..+||++|+. .+++.+||+|++.+...... .... +....++++.+++.+ ..++.+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 67788999999987643221 1111 123457899999964 456553 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEE-EEC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1082 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~-y~G 1082 (1433)
|||++||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999999766665 555
Q ss_pred C
Q 000540 1083 P 1083 (1433)
Q Consensus 1083 ~ 1083 (1433)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=569.46 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=163.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 588999987763 24699999999999999999999999999999999997653 4799999873
Q ss_pred ccccccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000540 926 KQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1002 (1433)
+.+||++|+.. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..++.+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 35899999864 456799999986421 11 1 1134577899999994 5666654 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++||++|+.+|++|||||||+|||+.+...+++.|+++ +.|||++||++. .+.+.||++++|++|+.+.+.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCC
Confidence 999999999999999999999999999999999999999886 459999999986 5777899999999754333777
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 519 ~~ 520 (530)
T PRK15064 519 TY 520 (530)
T ss_pred CH
Confidence 64
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=565.71 Aligned_cols=201 Identities=19% Similarity=0.280 Sum_probs=163.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 488899987753 24699999999999999999999999999999999997653 479999854 1
Q ss_pred ccccccceEEEeecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000540 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1003 (1433)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..++.+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987642211 1111 123457899999964 456553 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEE-EEC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVG 1082 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~-y~G 1082 (1433)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||++. .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5777899999998766765 545
Q ss_pred C
Q 000540 1083 P 1083 (1433)
Q Consensus 1083 ~ 1083 (1433)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=549.07 Aligned_cols=197 Identities=22% Similarity=0.345 Sum_probs=159.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 488899987763 34699999999999999999999999999999999997653 3789988641
Q ss_pred ccccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000540 926 KQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 1002 (1433)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.+ ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 112345788999999964 556554 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEE-EE
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YV 1081 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~-y~ 1081 (1433)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999986 57788999999997 4554 88
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=549.72 Aligned_cols=202 Identities=23% Similarity=0.342 Sum_probs=163.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|...+ ..|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 478889887653 34699999999999999999999999999999999997653 4789988 4321
Q ss_pred ccccccceEEEeecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000540 926 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 1003 (1433)
.+||++|+. .+++.+||.|++.+.... . .... ....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhccc-c--cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 578889999999874321 0 1111 123467888889885 3456554 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-cCcEEEEEC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGYEIYVG 1082 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~Gg~~~y~G 1082 (1433)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|+ +|....|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 5778899999998 666666777
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 64
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=545.79 Aligned_cols=211 Identities=20% Similarity=0.237 Sum_probs=171.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ + ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 477888876652 2 248999999999999999999999999999999998653 47888875
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1479999998888899999999874211 111 124678999999988777764 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | +....|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5777899999996 3 66666654
Q ss_pred Ccc---cchHHHHHhhC
Q 000540 1085 GRH---SCHLVSYFEAI 1098 (1433)
Q Consensus 1085 ~~~---~~~~~~yf~~~ 1098 (1433)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 321 12345667766
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=502.52 Aligned_cols=447 Identities=22% Similarity=0.337 Sum_probs=346.9
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1433)
..++|+||||+++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..++ .-|+.|.|+..+.|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 457999999999999999999999999999999999999998 99999999998765553 46999999999999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
++||.|||.++....... -. .+..+.+..+..+|+.+|+....++.||
T Consensus 97 ~LsVaeNifLgre~~~~~---g~---------------------------id~~~m~~~A~~~l~~lg~~~~~~~~v~-- 144 (500)
T COG1129 97 NLSVAENIFLGREPTRRF---GL---------------------------IDRKAMRRRARELLARLGLDIDPDTLVG-- 144 (500)
T ss_pred CccHHHHhhcccccccCC---Cc---------------------------cCHHHHHHHHHHHHHHcCCCCChhhhhh--
Confidence 999999999876433200 00 0112233456788999999755777777
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.||+||||-|.|||||..++++++||||||+|+...+..+++.++++. ..+..++.|+|..+|++++||+|.||.
T Consensus 145 ---~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVlR 219 (500)
T COG1129 145 ---DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVLR 219 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEEe
Confidence 499999999999999999999999999999999999999999999975 457889999999999999999999999
Q ss_pred CCeEEEecCH-HHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhh
Q 000540 400 NGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDEL 478 (1433)
Q Consensus 400 ~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1433)
+|+.+..++. ++.- .++.
T Consensus 220 DG~~v~~~~~~~~~~--------------------------------------------~~~l----------------- 238 (500)
T COG1129 220 DGRVVGTRPTAAETS--------------------------------------------EDEL----------------- 238 (500)
T ss_pred CCEEeeecccccCCC--------------------------------------------HHHH-----------------
Confidence 9999876552 2110 0000
Q ss_pred cCCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchh
Q 000540 479 QTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYA 558 (1433)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~ 558 (1433)
.
T Consensus 239 --------------------------v----------------------------------------------------- 239 (500)
T COG1129 239 --------------------------V----------------------------------------------------- 239 (500)
T ss_pred --------------------------H-----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHH
Q 000540 559 GALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFK 638 (1433)
Q Consensus 559 g~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~ 638 (1433)
-.|+|=
T Consensus 240 -----------------------------------------------------------------~~MvGr--------- 245 (500)
T COG1129 240 -----------------------------------------------------------------RLMVGR--------- 245 (500)
T ss_pred -----------------------------------------------------------------HHhhCc---------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcC
Q 000540 639 QYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLG 718 (1433)
Q Consensus 639 ~~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 718 (1433)
++
T Consensus 246 ----------------------------------------------------------------------------~~-- 247 (500)
T COG1129 246 ----------------------------------------------------------------------------EL-- 247 (500)
T ss_pred ----------------------------------------------------------------------------ch--
Confidence 00
Q ss_pred CcccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccC
Q 000540 719 HSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIG 798 (1433)
Q Consensus 719 ~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1433)
.. .| +
T Consensus 248 ---~~------------------------------------------------~~--~---------------------- 252 (500)
T COG1129 248 ---ED------------------------------------------------LF--P---------------------- 252 (500)
T ss_pred ---hh------------------------------------------------hc--c----------------------
Confidence 00 00 0
Q ss_pred CccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeee
Q 000540 799 GTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGV 878 (1433)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~v 878 (1433)
. . ... ...+..+++++++.. ..++|+
T Consensus 253 ----------------------------~-~--~~~------~~~~~~l~v~~l~~~-----------------~~~~dv 278 (500)
T COG1129 253 ----------------------------E-P--PEE------GIGEPVLEVRNLSGG-----------------GKVRDV 278 (500)
T ss_pred ----------------------------c-c--ccc------CCCCcEEEEecCCCC-----------------CceeCc
Confidence 0 0 000 000112344444311 147899
Q ss_pred EEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCCCCHHH
Q 000540 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPFVTVYE 951 (1433)
Q Consensus 879 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E 951 (1433)
||++++||++||-|-=|||+|-|+++|.|... ...|+|.+||.+.... ..+.-++|||.|. .+++.++|.+
T Consensus 279 Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~ 356 (500)
T COG1129 279 SFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAE 356 (500)
T ss_pred eeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHH
Confidence 99999999999999999999999999999544 3479999999986543 2345689999975 4678899999
Q ss_pred HHHHHHHhcCC-C-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 952 SLLYSAWLRLP-P-EIDSETRKMFIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 952 ~l~f~a~lr~~-~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
|+.++...+.. . -.+....++.+++..+.++++... +.. +..||||++|||.|||.|..+|+||||||||.|
T Consensus 357 Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRG 431 (500)
T COG1129 357 NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431 (500)
T ss_pred heehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcC
Confidence 99887332221 1 244555566788899999886432 233 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
+|..+...|.++|++++++|++||++|-+.. |+..+||||++|++ |+++-
T Consensus 432 IDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 432 IDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred cccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999986 89999999999997 55543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=531.48 Aligned_cols=200 Identities=18% Similarity=0.262 Sum_probs=157.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ +++.+|+|+|++|++|++++|+|||||||||||++|+|...+ ..|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 488999988763 123589999999999999999999999999999999997653 4689988652
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1004 (1433)
..+||++|+. .+.+++.++..+......+ ... ++.+.++++.+++.+ ..++. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 3445666664332111111 111 234678999999974 45554 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEE-EECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI-YVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~-y~G~ 1083 (1433)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|++ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999986 57778999999997 5665 7776
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=501.87 Aligned_cols=221 Identities=28% Similarity=0.322 Sum_probs=173.9
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1433)
.+.+++|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ .-+++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 456999999999999999999999999999999999999998 99998865 2379999999988888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChH---HH-HHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID---VY-MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+.+.-+..- .++...+..... ...++++.. .+ ......++.+.+.+++.++..||++.. ++.++
T Consensus 84 ~~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-- 152 (530)
T COG0488 84 LDYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-- 152 (530)
T ss_pred HHHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh--
Confidence 9999876531 112222221111 111222111 01 111223456667788999999999877 65554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.||||||.||+||++|+.+|++|+|||||++||..+..++.+.|++. .+ ++++|+|++..+-+.|++|+-++
T Consensus 153 ---~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 153 ---SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 69999999999999999999999999999999999999999988752 34 77889999999999999999999
Q ss_pred CCeEE-EecCHHHHHH
Q 000540 400 NGQIV-YQGPRELVLE 414 (1433)
Q Consensus 400 ~G~iv-~~G~~~~~~~ 414 (1433)
.|++. |.|.++...+
T Consensus 225 ~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 225 RGKLTPYKGNYSSYLE 240 (530)
T ss_pred CCceeEecCCHHHHHH
Confidence 99874 7788776543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=457.84 Aligned_cols=457 Identities=21% Similarity=0.308 Sum_probs=355.3
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1433)
...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|+ .-||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 467999999999999999999999999999999999999999 99999999998765553 46999999999999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
++||.|||..+..-... .+ ....+...+++.+.+..||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------------------------------~~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------------------------------IDRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------------------------------cCHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999988642100 00 01122345678889999999988887775
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++.. .+.+|+.|+|-..|+.+.||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999998864 46778889999999999999999999
Q ss_pred CCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhhhhhhhhccCCCCccCCHHHHHHHHhccccchhhhhhhc
Q 000540 400 NGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQ 479 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1433)
.|+++-.-++ . + + .+.+++++
T Consensus 215 ~Gkvvgt~~~--~--------------~------------------------~---~t~~ela~---------------- 235 (501)
T COG3845 215 RGKVVGTVDP--V--------------A------------------------E---TTEEELAE---------------- 235 (501)
T ss_pred CCeEEeeecC--C--------------C------------------------C---CCHHHHHH----------------
Confidence 9998643210 0 0 0 00000000
Q ss_pred CCccccccccccccccccCCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhheeccCCCCccccccchhH
Q 000540 480 TPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAG 559 (1433)
Q Consensus 480 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g 559 (1433)
+
T Consensus 236 -----------------------------------l-------------------------------------------- 236 (501)
T COG3845 236 -----------------------------------L-------------------------------------------- 236 (501)
T ss_pred -----------------------------------H--------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCccChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccCCCHHHHHHH
Q 000540 560 ALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQ 639 (1433)
Q Consensus 560 ~lf~~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~~ff~~ 639 (1433)
|+
T Consensus 237 ------------------------------------------------------------------Mv------------ 238 (501)
T COG3845 237 ------------------------------------------------------------------MV------------ 238 (501)
T ss_pred ------------------------------------------------------------------hc------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000540 640 YFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGH 719 (1433)
Q Consensus 640 ~l~l~~~~~~~~~l~~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1433)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccchhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccCC
Q 000540 720 SWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGG 799 (1433)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~l~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1433)
|.++.. .
T Consensus 239 -------------G~~v~~-------------------------------------~----------------------- 245 (501)
T COG3845 239 -------------GREVVL-------------------------------------R----------------------- 245 (501)
T ss_pred -------------CCcccc-------------------------------------c-----------------------
Confidence 000000 0
Q ss_pred ccccccCCCCCCcccccccCCcccccccccCCCCCCCCcccCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeE
Q 000540 800 TVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVS 879 (1433)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1433)
.. + .+...+ +..++++|++...+ .....+++||
T Consensus 246 -------------~~-~---------------~~~~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs 278 (501)
T COG3845 246 -------------VV-K---------------PPSTPG------EVVLEVEDLSVKDR------------RGVTAVKDVS 278 (501)
T ss_pred -------------cc-c---------------CCCCCC------CeEEEEeeeEeecC------------CCCceeeeee
Confidence 00 0 000000 12467777765432 1246799999
Q ss_pred EEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC-c---cc-cccceEEEeecCCC---CCCCCCHHH
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK-K---QE-TFARISGYCEQNDI---HSPFVTVYE 951 (1433)
Q Consensus 880 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~~-~~~~~~gyv~Q~~~---~~~~lTv~E 951 (1433)
|++++||++||.|..|-|-+.|+.+|+|..+. ..|+|.++|.+. . .. ..+.-++|||.|.. +.+.+|+.|
T Consensus 279 ~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~e 356 (501)
T COG3845 279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAE 356 (501)
T ss_pred eEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHH
Confidence 99999999999999999999999999997643 249999999986 2 11 22346899999873 468899999
Q ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000540 952 SLLYSAWLRL----PPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1433)
Q Consensus 952 ~l~f~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTs 1027 (1433)
|+.+...-+. ..-.+....++...++++.++........ ..+.||||++||+-+||+|.++|++|+..+||.
T Consensus 357 N~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 (501)
T ss_pred HhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence 9987654221 11245566777889999999887332211 146799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|||..+.+.|.+.|.+.++.|+.|++++-+.+ ++++++|||.+|.+ |+++...+..
T Consensus 433 GLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred cccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999997 89999999999997 6777666653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=372.00 Aligned_cols=214 Identities=26% Similarity=0.358 Sum_probs=187.6
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+++|++.++ +...+|+|||+++++||+++|+|||||||||||+||.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5666776554 56789999999999999999999999999999999999876 34899999996542
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 ----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
....|+.+|+|+|+..+||++||.||+..+-..- ...++++.++...+.|+.+||.+.+|..+ .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2346778999999999999999999999864321 34567777888899999999999999874 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|||||+|||||+.+|+++++|||||.|||+....|.+.+++++++|.|.||+||++.. ..+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6778999999986 7888888
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=373.30 Aligned_cols=221 Identities=25% Similarity=0.394 Sum_probs=191.0
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC----CccceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----VPERTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (1433)
...+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 467999999999999999999999999999999999999998 99999999876321 23578999999999999
Q ss_pred CCCHHHHHHHhhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
++||.||+..+..- ++ .+..+++.++.++|+.+||.+.+|.
T Consensus 91 HlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~---- 132 (240)
T COG1126 91 HLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADA---- 132 (240)
T ss_pred cchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhh----
Confidence 99999999987531 11 1223455567789999999999884
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
++..|||||||||+|||||+.+|+++++|||||+|||+...++.+.++++++. +.+.+.++|....+.+.+|||+.|
T Consensus 133 -yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 -YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred -CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEe
Confidence 55679999999999999999999999999999999999999999999998763 566777899999999999999999
Q ss_pred cCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000540 399 SNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev 436 (1433)
++|+++..|+++++ |..|.+....+|+..+
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 99999999999987 4567777677777643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=395.21 Aligned_cols=202 Identities=19% Similarity=0.237 Sum_probs=156.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..+.++|+++.++. +..++++++|-+.+++.+|++||||+||||||+++.|...+ ..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc
Confidence 46889999887652 22689999999999999999999999999999999997653 35655432211
Q ss_pred CccccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 925 KKQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 925 ~~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
.+++..|+- .+.-..++.|+++=.. .++.+.+.+..++..+||+...+... .+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVP----MSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccc----hhhcccc
Confidence 123334432 2233467777765211 11334556788999999996554432 4689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||.++||... |-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999998765 4689999999874 778899999999999999988
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=375.32 Aligned_cols=225 Identities=27% Similarity=0.365 Sum_probs=198.5
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1433)
....+|+|||++|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..... ++.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 9999999998876543 468999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
++...||.||++|..+..+.+ +.+.+.++.++|+.+||++.++
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~--- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKAD--- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc---
Confidence 999999999999998776532 2335567889999999998887
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+++.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|++.|++..+ ..+.+|+.++|.++-+-+.||||.
T Consensus 137 --~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~-~lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 137 --RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR-ELGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred --cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH-HcCCEEEEEechHHHHHHHhhhhe
Confidence 45668999999999999999999999999999999999999999999999765 456778889999999999999999
Q ss_pred EEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcC
Q 000540 397 LLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s 438 (1433)
||++|+++++|+..++ |..|.+.-..+|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999988 456777666777776553
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=372.79 Aligned_cols=219 Identities=23% Similarity=0.323 Sum_probs=190.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
|++++|+-.+... ..+...+|+|||++|++||++||+|+||||||||++++.++..+ .+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5677776444321 11345799999999999999999999999999999999998764 4899999997653
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
. +..|+.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+..+..+ .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 2 2457789999999999999999999999887754 567888999999999999999988874 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
|||||||+|||||+.+|+||++|||||.|||++.+.|.++|+++.++ |.||+++||+++ -+-+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999987 37789999999996 7999
Q ss_pred EECCCC
Q 000540 1080 YVGPLG 1085 (1433)
Q Consensus 1080 y~G~~~ 1085 (1433)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=388.30 Aligned_cols=211 Identities=32% Similarity=0.440 Sum_probs=185.9
Q ss_pred ceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc--ccccceEEEeecCCCCCCCCC
Q 000540 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ--ETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 948 (1433)
++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 46899999999999999999999999999999999998764 58999999988654 356678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
|+|+|.|.+.++.+.. ...+++++++++.++|.+..++. +++||+|||||++||+||+++|++|||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999999986543 44566799999999999865555 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCCcccchHHHHHhh
Q 000540 1029 LDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEA 1097 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~~~~~~~~~yf~~ 1097 (1433)
|||.++..+++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|+. .++...+..
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~----~~l~~~~~~ 230 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP----EELKEKFGG 230 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH----HHHHHhhcc
Confidence 99999999999999999887 89999999997 68888999999986 799999975 345555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=368.90 Aligned_cols=218 Identities=25% Similarity=0.385 Sum_probs=185.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++. + ++|+|||+++++|++++|+||||||||||+|+|.|..++ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 5889999988741 2 599999999999999999999999999999999997663 489999999887
Q ss_pred ccccccceEEEeecCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 926 KQETFARISGYCEQNDIH--SPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~--~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
+...-+..+|||||...+ ...+||+|.+..+...+.. .....+..++.++++|+.+|+.+++|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 654445679999996533 2348999999886433321 111123346779999999999999999876 59999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+|+.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5889999999997 4789999
Q ss_pred CCCc
Q 000540 1083 PLGR 1086 (1433)
Q Consensus 1083 ~~~~ 1086 (1433)
++..
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9853
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=387.83 Aligned_cols=217 Identities=30% Similarity=0.434 Sum_probs=195.6
Q ss_pred eecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCHHH
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1433)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1433)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998775 78999999999999999999
Q ss_pred HHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCC
Q 000540 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325 (1433)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1433)
|++|+.+.++.. ..+.+.+++++.+.|+|++..|. .+++||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r-----~P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNR-----KPLQLS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhc-----CcccCC
Confidence 999999877542 12345678899999999998884 566899
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000540 326 GGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405 (1433)
Q Consensus 326 GGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~ 405 (1433)
|||||||++||||+.+|++++||||+|.||+..+..+...|+++ |+.-+++++.++|+..|+..++|+|++|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l-h~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL-HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH-HHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999999999885 44567888889999999999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCChHHHHH
Q 000540 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1433)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 434 (1433)
.|++.++. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4677776777654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=358.16 Aligned_cols=210 Identities=26% Similarity=0.399 Sum_probs=186.9
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1433)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||.++.+.+. +|.||||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 467999999999999999999999999999999999999998 9999999999987654 6899999999999999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||.|||++-..+++.+ .++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 99999999877665432 12345678999999999752 123478
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.+|||||+|||.+||||+.+|++++||||+++|||-++.++.+.++++.+ .-+++++.++|+.+|.+.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 889999999999999999999999999999999999999999998888654 4567788899999999999999999999
Q ss_pred CeEEEecCHHHHHH
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1433)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=355.59 Aligned_cols=231 Identities=26% Similarity=0.360 Sum_probs=199.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.|++++++.+. +.+.|++|||++|++||+++||||||+||||||++|.|..++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 57888887654 567899999999999999999999999999999999998774 489999999886
Q ss_pred ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000540 926 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 998 (1433)
.+. ..++++|+++|+-.+|..+||+||+.|..+ ...+.+++..++.+..-|+.+||.+. .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 431 346779999999999999999999998643 33456677778888888999999887 6655 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||+|||+++|||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..||++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 68999999999997 79
Q ss_pred EEEECCCCcc----cchHHHHHhhCCC
Q 000540 1078 EIYVGPLGRH----SCHLVSYFEAIPG 1100 (1433)
Q Consensus 1078 ~~y~G~~~~~----~~~~~~yf~~~~~ 1100 (1433)
++..|+..+- ...+.+||....+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 9999997521 1356778887643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=361.83 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=180.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.+.++++++.+. ...+|+|||++|++||+++|+|||||||||||++|+|..++ ..|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 366777776653 36799999999999999999999999999999999998774 489999999887
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.. ..+.+|||+|++.++|.+||+||+.++...+. .+++++++++.+.|+.+||.+..|+.+ .+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 32 34568999999999999999999999876653 345666778999999999999999874 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++.+ +++|||++|||.+ |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999865 5899999999997 677889999999974
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=386.23 Aligned_cols=223 Identities=29% Similarity=0.416 Sum_probs=199.4
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1433)
...+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 457999999999999999999999999999999999999999 9999999999998777 478999999999999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||++|+.+.++... ..+.+.+++++|+.++|++.++ +++.
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-----R~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-----RKPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh-----hChh
Confidence 9999999987442111 1224567899999999998766 5666
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+|||||+.+|++|+||||.|+||..-+.++...++++.+.. +.+.+.++|+..|.+.++|||++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 899999999999999999999999999999999999999999999876654 7788889999999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000540 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1433)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev 436 (1433)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5678888889998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=368.67 Aligned_cols=218 Identities=28% Similarity=0.385 Sum_probs=187.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++.+|+++.|+ ++.+|+|+||++++|++++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 367888888874 46899999999999999999999999999999999997663 479999999986
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. +.+++.++|+||.....+.+||+|.+.++..-+... ....++.++.++++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 456788999999998888999999999874332211 1123334457899999999999999875 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||+.|||||+++|+||+||||||.||...+..++++++++++ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999984 7789999999996 78999
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=358.06 Aligned_cols=193 Identities=28% Similarity=0.428 Sum_probs=167.8
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc------ccc-cceEEEeecCCCCC
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ------ETF-ARISGYCEQNDIHS 944 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~~~~~ 944 (1433)
..+|++||++|++||+++|+|||||||||||++|.|...+ .+|.+.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 48999999976542 123 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000540 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLD 1023 (1433)
|++||+||+.+...+... ....+++.++++++.+||.+..+ +. +.+|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22245667889999999997665 54 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
|||.+||+.++..|++++++++++ |+|||++|||+ ++...|||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999865 99999999997 4788999999999865
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=353.37 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=188.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++|+||+..+ +.+.+++|+|++|++||++.++|||||||||+|++|.++.++ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 5677877554 356799999999999999999999999999999999998774 4899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP--LKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 1001 (1433)
. ..+||.+|||-|+..++|++||.||+.+--.+. ..++++.+++++|+|+.+||.+ +.++. +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 356889999999999999999999998765553 3467788889999999999975 67776 467999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
||+|||.+||||+.+|+||+||||+++|||.++..+++.++++.++ |+|||++|||.. +.+.+.|||.+|++ |+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999997 78899999999985 67777
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
++++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7765
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=362.44 Aligned_cols=224 Identities=29% Similarity=0.456 Sum_probs=191.1
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCe---eCCCCCc-cceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---NMDEFVP-ERTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1433)
...+++|||+.|+.||++|++|||||||||||++|+|+..|+ +|.|.+||+ +.+.... .|.||||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 355899999999999999999999999999999999999998 999999999 5555333 488999999999999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.|||.+||+||.+++.. + | +..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~--~-----------------p-------------~~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKE--R-----------------P-------------SEAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhccccccc--C-----------------C-------------ChhhHHHHHHHHHHHhcccchhh-----c
Confidence 99999999999876521 0 0 11234456888999999987766 6
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
++..|||||||||++||||+..|++|+||||+++||...+..+-+.|+++... -+.+++.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~-~~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR-LGVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh-hCceEEEEeCCHHHHHhhcceEEEec
Confidence 77889999999999999999999999999999999999999999999987554 45677779999999999999999999
Q ss_pred CCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000540 400 NGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev 436 (1433)
+|+|...||++++. ..|...-+..|+-++
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~~ 241 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGEV 241 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceecccccc
Confidence 99999999999984 446655555555443
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=351.27 Aligned_cols=219 Identities=26% Similarity=0.324 Sum_probs=186.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++-.++ +++++|+|||++|++||++||+|+|||||||||++|.|... +..|+|.++|..+
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 477888876653 45689999999999999999999999999999999999765 4589999999764
Q ss_pred cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000540 926 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994 (1433)
Q Consensus 926 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1433)
.. +.+++.+||++|+..+.+.++|.+|++.+..-+.+ .....++.+..+-++|+.+|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 24577899999999999999999999876432221 12333444556778999999999887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
..|||||+|||+|||||+.+|+||+.|||+++|||.+++.||+.|+++++ +|.|||++.||... ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 49999999999874 678999999998
Q ss_pred cCcEEEEECCCC
Q 000540 1074 RGGYEIYVGPLG 1085 (1433)
Q Consensus 1074 ~Gg~~~y~G~~~ 1085 (1433)
+ |+++|.||..
T Consensus 223 ~-G~ivfDg~~~ 233 (258)
T COG3638 223 A-GRIVFDGPAS 233 (258)
T ss_pred C-CcEEEeCChh
Confidence 6 7999999985
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=363.14 Aligned_cols=210 Identities=32% Similarity=0.456 Sum_probs=182.2
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1433)
.+.+|+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 356999999999999999999999999999999999999998 99999999999876553 789999999888889
Q ss_pred CCHHHHHHHhhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 241 MTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 241 lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
+||+|-+.+|..-. +. .. ...++....+++.|+.+|+.+.++..+
T Consensus 91 ~tV~d~V~~GR~p~~~~-------------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~--- 136 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-------------------FG------------RPSKEDEEIVEEALELLGLEHLADRPV--- 136 (258)
T ss_pred cEEeehHhhcCCccccc-------------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCcc---
Confidence 99999999985321 10 00 011122336888999999999998655
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
..|||||||||.|||||+.+|++|+||||||+||...+.++++.++++.++. +.++++++|+.....++||++++|+
T Consensus 137 --~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 137 --DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred --cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987644 5667778899999999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.07 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=184.1
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc--ccccceEEEeecCCCCCCCCCH
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ--ETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
.++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|.++|.+... ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3589999999999999999999999999999999998774 48999999998543 3467889999988899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
+|||.|.+++. +....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|+++++|||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999886 34566778889999999999999999976 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|..+...+.+.++++.++|++||++||.++ ++.++||++++|++ |++++.|...
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999988999999999986 78889999999997 7899999863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=353.45 Aligned_cols=194 Identities=27% Similarity=0.401 Sum_probs=172.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
..+|+|+|++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999998 999999999883 3567899999999999999999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.|+.+.++... .+...+++.+|+.+||.+..| .++..|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987654211 122346788999999998877 567789
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC--Ce
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN--GQ 402 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~--G~ 402 (1433)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.++. +.+++.++|+-+|...++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999888877654 57778899999999999999999998 44
Q ss_pred E
Q 000540 403 I 403 (1433)
Q Consensus 403 i 403 (1433)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=394.81 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=186.0
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++++|++..++. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46889999877631 235699999999999999999999999999999999998763 48999999988
Q ss_pred Ccc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 925 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.+||.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2245679999999999999999999999876653 223344567889999999998888764 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|||||+||+||+.+|+||+|||||+|||+.+++.++++|++++ +|+|||++||+++ ++..++||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57778999999997 6888888
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 75
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=332.26 Aligned_cols=212 Identities=26% Similarity=0.319 Sum_probs=182.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
|.|+||+-.|+. .+++|+||||+|++||++-|+|||||||||||++|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 567888766542 3569999999999999999999999999999999999665 34799999999864
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. -.+|++|+|+||..+.+..||+||+.|...... .+..+.++++.++|+.+||.+..+.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 31 257889999999999999999999999876653 34566778899999999999988876 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||+|||+||||++.+|++|+.||||.+|||..+..||+++.++...|.|||+.|||.+. +-..-.|++.|++ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999998889999999999652 4445578999987 56665
Q ss_pred EC
Q 000540 1081 VG 1082 (1433)
Q Consensus 1081 ~G 1082 (1433)
..
T Consensus 218 d~ 219 (223)
T COG2884 218 DE 219 (223)
T ss_pred cc
Confidence 44
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=355.57 Aligned_cols=206 Identities=29% Similarity=0.436 Sum_probs=185.1
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCc---cCcc-ccccceEEEeecCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY---PKKQ-ETFARISGYCEQNDIHSP 945 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~ 945 (1433)
+...+++|||+.|+.||++||+|||||||||||++|+|+.++ ..|.|.+||. +.+. ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456789999999999999999999999999999999998774 4899999998 5444 334678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000540 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1433)
Q Consensus 946 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEP 1025 (1433)
++||.||+.|+...+ ....+..+.+.++++.|+.++|+++.++. +.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 34456677888999999999999999987 467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1026 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
.++||+.-+..+.+.|+++.++ |.|+|++|||+. +.++.+|||++|++ |++.-.||..
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999876 999999999997 79999999999997 6777888763
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=337.69 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=187.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCC---CCCceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~---~~~~~~~G~i~i~g 922 (1433)
.++.+|++..+ +.+.+|+|||+.|++++++||+|||||||||||+++... .++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 47778888766 356799999999999999999999999999999999984 33456899999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGV 996 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1433)
.++.. ..+|+.+|.|+|.+.-+| +|++||+.|+.++....+ ++.++.|++.|+...|++ ..|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 88643 246788999999999999 999999999988765433 667788999999999976 44444322 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
.+|||||+|||||||||+.+|+|||||||||+|||.+...|-++|.+++ +.-|||++||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 5799999999987 57788999999987 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
+++++|++
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999997
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=371.87 Aligned_cols=212 Identities=31% Similarity=0.453 Sum_probs=185.6
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC--CccceEEEecCCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--VPERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1433)
.+.+|+||||++++|++++|+||||||||||+|+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 467999999999999999999999999999999999999998 99999999987652 3357899999999999999
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.|.+++.+... ...+.+++++++.+||++..+ ..+
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~-----~~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKAN-----KKV 134 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhC-----cch
Confidence 99999999998875421 012345788999999998444 345
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
++||+|||||++||.||+++|++|||||||+|||+.++.++.+.|++++.. ++++|++.+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999998764 4467777889999999999999999999
Q ss_pred eEEEecCHHHHHHHHHh
Q 000540 402 QIVYQGPRELVLEFFES 418 (1433)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1433)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998766543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=343.33 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=182.3
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1433)
..+.|++|||++|++||+++|+|||||||||||++|.|+++|+ +|+|.++|.++..... ++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3467999999999999999999999999999999999999998 9999999999866543 367999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
+|..+||+||+.|..+-... .+....+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~~---------------------------------lp~~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------------------------------LPESLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhcc---------------------------------CCHHHHHHHHHHHHHhcCCChh----h
Confidence 99999999999997643211 0112233455666888999764 2
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
++.++.+||||+|||+++||||+.+|+++|+||||+||||.++..+.+.++++... -+.++++++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhhceEE
Confidence 34678899999999999999999999999999999999999999999999987654 46777779999999999999999
Q ss_pred EEcCCeEEEecCHHHHHH
Q 000540 397 LLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~~ 414 (1433)
+|.+|+|+..|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=352.07 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=176.9
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC--CCCCCCCH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHD--NHIGEMTV 243 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1433)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+.++...+.+||||||.. .+-+.+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4999999999999999999999999999999999999998 999999999887766667899999953 34456899
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+|.+..+..-+. + . ... ...+....++++|+.+|+.+.+|..+| .
T Consensus 95 ~d~V~~g~~~~~-g-~---~~~-------------------------~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~ 139 (254)
T COG1121 95 KDVVLLGRYGKK-G-W---FRR-------------------------LNKKDKEKVDEALERVGMEDLRDRQIG-----E 139 (254)
T ss_pred HHHHHccCcccc-c-c---ccc-------------------------ccHHHHHHHHHHHHHcCchhhhCCccc-----c
Confidence 999998742210 0 0 000 011123568899999999999998777 4
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.++ +.+|++++|+...+.+.||+|+.|++ ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999998654 67788899999999999999999954 68
Q ss_pred EEecCHHHHHH
Q 000540 404 VYQGPRELVLE 414 (1433)
Q Consensus 404 v~~G~~~~~~~ 414 (1433)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999998753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=346.81 Aligned_cols=197 Identities=27% Similarity=0.414 Sum_probs=168.4
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1433)
...+|++||++|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++..+.. ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 367999999999999999999999999999999999999998 9999999999876543 357999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
++|++||+||+.+...+.+.... +....++.+++.+||++..+.
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~-- 137 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLK-- 137 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhcc--
Confidence 99999999999987766543210 122346778999999876551
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.+. .++++++++|+ +++...|||++
T Consensus 138 --~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd-~~lA~~~dr~i 213 (226)
T COG1136 138 --KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHD-PELAKYADRVI 213 (226)
T ss_pred --CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCC-HHHHHhCCEEE
Confidence 345579999999999999999999999999999999999999999999998764 35666667776 57778999999
Q ss_pred EEcCCeE
Q 000540 397 LLSNGQI 403 (1433)
Q Consensus 397 vL~~G~i 403 (1433)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=390.66 Aligned_cols=214 Identities=24% Similarity=0.431 Sum_probs=178.2
Q ss_pred cCCccccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCC
Q 000540 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQH 234 (1433)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1433)
||.| ++.+||+|+||+|+|||.|||+|||||||||+.++|..+++|+ +|+|.+||+|+++.++ ++.||+|.|+
T Consensus 475 YP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QE 550 (716)
T KOG0058|consen 475 YPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQE 550 (716)
T ss_pred cCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeecc
Confidence 4554 3467999999999999999999999999999999999999999 9999999999988876 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
|.+|. .||+|||.||.. . ...+.+..+++..... + =+.++++.+||
T Consensus 551 PvLFs-~sI~eNI~YG~~--~--~t~e~i~~AAk~ANah--------------------------~---FI~~~p~gY~T 596 (716)
T KOG0058|consen 551 PVLFS-GSIRENIAYGLD--N--ATDEEIEAAAKMANAH--------------------------E---FITNFPDGYNT 596 (716)
T ss_pred ceeec-ccHHHHHhcCCC--C--CCHHHHHHHHHHhChH--------------------------H---HHHhCcccccc
Confidence 87764 699999999875 1 1223333332222110 1 14579999999
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.||+++. .||||||||++|||||+++|+||||||.||+||+++...+.+.|.+..+ + .+|++|. |+.++.+.+|+
T Consensus 597 ~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~-rTVlvIA-HRLSTV~~Ad~ 671 (716)
T KOG0058|consen 597 VVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--G-RTVLVIA-HRLSTVRHADQ 671 (716)
T ss_pred ccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--C-CeEEEEe-hhhhHhhhccE
Confidence 9999887 5999999999999999999999999999999999999999999987643 3 3444444 46778899999
Q ss_pred EEEEcCCeEEEecCHHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~~ 414 (1433)
|+|+++|++++.|+++|+++
T Consensus 672 Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 672 IVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEEcCCeEEecccHHHHhh
Confidence 99999999999999999975
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=333.19 Aligned_cols=209 Identities=30% Similarity=0.344 Sum_probs=184.5
Q ss_pred cccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCC
Q 000540 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIG 239 (1433)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~ 239 (1433)
+...++++||||+++.|++++|+|||||||||+|++|++++.|+ +|+|++||.+..+.. .++.+|.++.+..++.
T Consensus 12 ~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 12 GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred cCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhh
Confidence 33455899999999999999999999999999999999999999 999999999875432 3578999997788999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.||++|||.|.+++.+.. ..+.+.+++.+.+.|+|.+|.|+.+|
T Consensus 89 RlT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~-- 132 (245)
T COG4555 89 RLTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVG-- 132 (245)
T ss_pred hhhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHh--
Confidence 999999999988765431 12345678889999999999999887
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
++|-|+||||+|||||+++|++++|||||||||..+...+.+.++++. ..+.+|+..+|..+|+..+||+|++|+
T Consensus 133 ---~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh 207 (245)
T COG4555 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred ---hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEe
Confidence 599999999999999999999999999999999999999999998863 336677788999999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 000540 400 NGQIVYQGPRELVLE 414 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1433)
+|++++.|+.+++.+
T Consensus 208 ~Gevv~~gs~~~l~~ 222 (245)
T COG4555 208 KGEVVLEGSIEALDA 222 (245)
T ss_pred cCcEEEcCCHHHHHH
Confidence 999999999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=367.65 Aligned_cols=214 Identities=27% Similarity=0.385 Sum_probs=189.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++-.+ +...+|+|||++|+.||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~y-------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF-------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 46677776554 22239999999999999999999999999999999999876 3589999999987
Q ss_pred cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
+. ....|.+++|+|+..++|++||+||+.|+.+.+. .++++.+++|.++.+.++|.++.|+++ ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 66 3456889999999999999999999999987763 456778889999999999999999984 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.++||+.+|++ |++.-.|.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999975 78899999999995 78888887
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=334.91 Aligned_cols=222 Identities=26% Similarity=0.380 Sum_probs=180.6
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN 236 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1433)
.+.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++.+.. .++++|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999998755 34688999999999986532 3689999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-cccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 315 (1433)
-|| +|++||++||.+..|... +.+ +++++..|+.-+|-+. .|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~l--------------------------------deiVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KEL--------------------------------DEIVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHH--------------------------------HHHHHHHHHHhHhHHHhHHHh
Confidence 998 999999999999887532 111 1233333444333321 2211
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
. +...+|||||+||++|||||+-+|+||+||||||+|||.++..|-+.+.++. ..-+|++++|.+.+..+..|++
T Consensus 144 -~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 -H-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred -h-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhh
Confidence 1 2344799999999999999999999999999999999999999999998874 3567777999999999999999
Q ss_pred EEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHH
Q 000540 396 ILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1433)
..+..|++++.|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 4567776666664
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=368.34 Aligned_cols=215 Identities=27% Similarity=0.376 Sum_probs=190.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++-.+ +...+|+|||++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 57788876544 456899999999999999999999999999999999998764 489999999987
Q ss_pred ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
... ..+|.+|+|+|+..+||++||+||+.|+..++ ....+++.+++++++++.++|.++.++.+ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 35788999999999999999999999997743 33455667889999999999999999874 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|+||||.|+||..-+..+..-|+++.++ |.|.|++|||.. +.+.++|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999999754 999999999986 78899999999986 68877776
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 5
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=337.71 Aligned_cols=217 Identities=25% Similarity=0.352 Sum_probs=180.9
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1433)
..+++|+|||+.|++||+++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3456999999999999999999999999999999999999998 9999999988765432 468999999999
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
+.+.+||.+|+..+..-+. +...- -.+. -.++.+.++-+.|+.+|+.+.+.+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~s---------lfgl---------------fsk~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRS---------LFGL---------------FSKEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHH---------HhCC---------------CCHHHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 11100 0111 11223345667899999999888776
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+ .|||||+|||+|||||+.+|++++-|||+++|||.++.++++.|++.....+.|+++ .+|...-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~-nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV-NLHQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE-EechHHHHHHHHhhhe
Confidence 5 599999999999999999999999999999999999999999999988766555554 5667788999999999
Q ss_pred EEcCCeEEEecCHHHHHH
Q 000540 397 LLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~~ 414 (1433)
-|++|+|+|.||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=365.85 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=186.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++..+. .+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 578889887763 34699999999999999999999999999999999998763 479999999886
Q ss_pred cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
.. ...++.+||++|++.+++.+||+||+.|.+.++. .+..+.++.++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2345779999999999999999999998765532 233444556789999999998888775 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999987 67889999999997 68899998
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=365.41 Aligned_cols=217 Identities=24% Similarity=0.289 Sum_probs=185.6
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++..++.. .+...+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5788888776421 1124699999999999999999999999999999999998764 4799999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. ..++.+||++|+..+++..||+||+.|....+ ..+..+.++++.++++.+||.+..++.+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999875543 2344555667899999999998888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 57788999999986 7899
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=363.97 Aligned_cols=206 Identities=23% Similarity=0.338 Sum_probs=178.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876432 45799999999999
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.|+.+..+... .+...++.++++.+||.+..|..
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~--- 137 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSY--- 137 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC---
Confidence 99999999998765432110 11223567889999998877754
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
++.|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.+.. +.++++++|+.+.+.++||+|++|
T Consensus 138 --~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45799999999999999999999999999999999999999999999876533 466777899999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999999874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=350.88 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=180.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35677777653 24699999999999999999999999999999999998653 4799999998754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
. ..+++.++|++|++.+++.+||+||+.+...... .....+.++.+.++++.+++.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 1245679999999999999999999988643221 1234444567888999999988777654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57788999999986 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 88875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=368.50 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=179.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876544 4789999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+..+.. ..+...+++++++.+||++..+. .++.
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDR-----KPRE 134 (356)
T ss_pred HHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhC-----Chhh
Confidence 99999987543211 01123456788999999887764 4457
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ..+++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998754 3356778889999999999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=365.10 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=180.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCce--eEEEECCeeCCCCCc-cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVS--GRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|+.+|+ + |+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35899999999999999999999999999999999999998 8 999999999865543 46799999999999999
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.|+.+..+.. ..+.+.+++++++.+||++..|.. +
T Consensus 95 tv~enl~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~-----~ 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------------------------------KADIAERVADALKLVGLGDAAAHL-----P 135 (362)
T ss_pred cHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCCchhhCC-----h
Confidence 9999999987543211 011233577889999999877754 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998765332577888999999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=365.58 Aligned_cols=214 Identities=26% Similarity=0.373 Sum_probs=187.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478888887653 34689999999999999999999999999999999998763 489999999876
Q ss_pred cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+.++.++++++.++|.++.++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2345566678999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999997 68899998
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=365.85 Aligned_cols=206 Identities=22% Similarity=0.360 Sum_probs=180.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876554 3789999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+.++... .+.+.+++++++.+||.+..+. .++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r-----~~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDR-----YVDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcC-----Chhh
Confidence 999999875433210 1123457788999999877664 4567
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ ..+++++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3356778899999999999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=366.59 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=180.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ +|.++||+|+..++|++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999999876444 4689999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+.++.. ..+.+.+++++++.+||++..|. .+..
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~-----~~~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERK-----YPGQ 134 (353)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhC-----Chhh
Confidence 99999986543211 01123457889999999987774 4557
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+ ..+++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3456777889999999999999999999999
Q ss_pred EEecCHHHHHH
Q 000540 404 VYQGPRELVLE 414 (1433)
Q Consensus 404 v~~G~~~~~~~ 414 (1433)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=365.65 Aligned_cols=214 Identities=25% Similarity=0.357 Sum_probs=185.8
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++..++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECC
Confidence 67888887652 124699999999999999999999999999999999998763 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.. ..++.+|||+|++.++|++||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986543 2344555677899999999999888774 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 999999999986 68899999999986 788999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=342.56 Aligned_cols=207 Identities=27% Similarity=0.388 Sum_probs=182.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCC----CCCccceEEEecCCC-CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD----EFVPERTAAYISQHD-NHIG 239 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1433)
..+|+|+|+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 56999999999999999999999999999999999999998 899999999865 223467899999994 5678
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.-||.|.++|+.+..+... ++...+++.+++.+||.+.++ +
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhcc-----C
Confidence 8899999999988776421 123457888999999998877 4
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.++++++|+...+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 5667999999999999999999999999999999999999999999999865 445677889999999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 000540 400 NGQIVYQGPRELVLE 414 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1433)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=363.02 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=187.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 578889887763 34689999999999999999999999999999999998763 489999999876
Q ss_pred ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
... ..+|.+|||+|+..++|++||+||+.|+...+. .+..+.+++++++++.++|.++.++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 234679999999999999999999999865432 345566778999999999999888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999987 68899999999997 68888888
Q ss_pred CC
Q 000540 1084 LG 1085 (1433)
Q Consensus 1084 ~~ 1085 (1433)
..
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=359.74 Aligned_cols=215 Identities=27% Similarity=0.371 Sum_probs=186.0
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3588899987763 35699999999999999999999999999999999998764 47999999988
Q ss_pred Ccc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 925 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
... ...++.+||++|+..+++.+||+|++.+.+..+. ....+.++.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999987665432 233334456788999999998888775 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999987 67889999999997 6899999
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.74 Aligned_cols=196 Identities=26% Similarity=0.341 Sum_probs=172.6
Q ss_pred eeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc-cccceEEEeecCCCCCCCCCHHHHHHH
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 955 (1433)
Q Consensus 877 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 955 (1433)
..+++|++||++||+||||||||||||+|+|...+ .+|+|.|||.+.... ...|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 67889999999999999999999999999998764 489999999986543 345668999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 000540 956 SAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1433)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1035 (1433)
+..-.+ ..+ .+.++.++.++..+||.++.+++++ .|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643221 223 3445678999999999999999854 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1036 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1036 ~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
++..++.++++ ++.|++++||+|+ +...+.|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999985 4899999999998 78899999999997 799999986
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=363.43 Aligned_cols=214 Identities=24% Similarity=0.329 Sum_probs=186.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEE--EEEEEcCc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNIKVSGY 923 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 923 (1433)
.++++|+++++. ...+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478888887763 24699999999999999999999999999999999998664 36 99999998
Q ss_pred cCccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 924 PKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 924 ~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
+.... ..+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 76432 23567999999999999999999999986543 2345556677899999999999888874 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68889999999986 78899
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=329.86 Aligned_cols=206 Identities=27% Similarity=0.319 Sum_probs=177.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC----ccceEEEecCCC--CCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV----PERTAAYISQHD--NHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1433)
.++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 36999999999999999999999999999999999999998 999999998775542 346799999986 567
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
|..||++.|.-+.+..+.+. .+.++.++|+.+||+...- +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~ 136 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----D 136 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----h
Confidence 88999999987655433211 1223677899999986543 3
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+.+..|||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+ ..+.+.+.++|+..-+..+||||+||
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeee
Confidence 67778999999999999999999999999999999999999999999998765 45677888999999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 000540 399 SNGQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1433)
++|++++.++.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=313.50 Aligned_cols=201 Identities=24% Similarity=0.369 Sum_probs=174.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1433)
..++.|++||++||+||||||||||||.|+|+..|. +|+|.+||.+.+...| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 367889999999999999999999999999999998 9999999999877655 578999999999999999999999
Q ss_pred HhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhh
Q 000540 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328 (1433)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1433)
+|.. ++-+. . .+.++.++.++...||..+.+.. +..|||||
T Consensus 94 LGl~---P~LkL------~-------------------------a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL------N-------------------------AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQ 134 (231)
T ss_pred ccCC---ccccc------C-------------------------HHHHHHHHHHHHHhChhhHhhhC-----ccccCchH
Confidence 8753 11110 0 01234578889999999888754 45799999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 000540 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408 (1433)
Q Consensus 329 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 408 (1433)
||||++||+|+++-+||+||||+|+||+.-+.++...+.+++.+. +.++++++|+.+++.+++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999987654 5566667888899999999999999999999999
Q ss_pred HHHHH
Q 000540 409 RELVL 413 (1433)
Q Consensus 409 ~~~~~ 413 (1433)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=364.91 Aligned_cols=218 Identities=27% Similarity=0.367 Sum_probs=185.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
..+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+.++... .+.+.+++++++.+||++..+.. +..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----p~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRK-----PHQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 999999865432110 11223567889999998877754 457
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 356777799999999999999999999999
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCCChHHHH
Q 000540 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1433)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1433)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998743 45544445544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=341.38 Aligned_cols=215 Identities=24% Similarity=0.327 Sum_probs=187.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
-+.++|++|+++. +..+|+|+|+++++|+.++|+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3678899988742 25799999999999999999999999999999999998764 469999999885
Q ss_pred c----cccccceEEEeecCCCCC-CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 926 K----QETFARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 926 ~----~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
. ....++.+|||+|++... ..-||.|.+.|+..- ...+.++.+++++++++.+++.+++++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 345678899999998654 467999999998643 2455667888999999999999998876 45799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
|||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |+|||++|||.. .+.+.+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 789999999987 58888999999997 6889
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99975
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=394.78 Aligned_cols=207 Identities=29% Similarity=0.421 Sum_probs=173.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1433)
.+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||+++++.++ ++.++||+|++ ++++.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~-~Lf~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccc-hhhcCc
Confidence 5899999999999999999999999999999999999998 9999999999987765 58899999975 566789
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.++.. ....+.+.++++.... + -.+..++..+||.||+.+.
T Consensus 563 I~eNi~l~~p----~~~~e~i~~A~~~ag~---------------------------~--~fI~~lP~gy~t~v~E~G~- 608 (709)
T COG2274 563 IRENIALGNP----EATDEEIIEAAQLAGA---------------------------H--EFIENLPMGYDTPVGEGGA- 608 (709)
T ss_pred HHHHHhcCCC----CCCHHHHHHHHHHhCc---------------------------H--HHHHhcccccccccccCCC-
Confidence 9999998752 2223333333332211 0 1145689999999997665
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+ +.| +..+.+.||+|+||++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~-IaH-Rl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVII-IAH-RLSTIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEE-EEc-cchHhhhccEEEEccCCc
Confidence 799999999999999999999999999999999999999999998864 3345444 444 467889999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
|+.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999986
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=361.24 Aligned_cols=207 Identities=21% Similarity=0.298 Sum_probs=180.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999999876543 4679999999999
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++++||+||+.|+.+..+... .+...++.++++.+||++..++.
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~-- 126 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRY-- 126 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCC--
Confidence 999999999999875543210 11223567889999998776654
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.++++.+ ..+.++++++|+..++.+++|+|++
T Consensus 127 ---p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 127 ---PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 446999999999999999999999999999999999999999999988754 3356777899999999999999999
Q ss_pred EcCCeEEEecCHHHHHH
Q 000540 398 LSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1433)
|++|++++.|+++++..
T Consensus 203 l~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 203 MKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCEEEeeCCHHHHHh
Confidence 99999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=339.49 Aligned_cols=210 Identities=27% Similarity=0.391 Sum_probs=175.6
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCc
Confidence 5667776653 24699999999999999999999999999999999997653 47999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000540 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006 (1433)
Q Consensus 928 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1433)
. ..++.++|++|++.+++.+|++||+.+..... .......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23457899999998888999999998765432 1223344556789999999988777664 4699999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1007 l~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 57788999999997 5666654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=320.71 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=183.7
Q ss_pred cCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcccc---c-cceEEEeecCCCC
Q 000540 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET---F-ARISGYCEQNDIH 943 (1433)
Q Consensus 868 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~ 943 (1433)
+++++++++|||+.+++||++||+|||||||||.+.++.|...+ .+|.|.+||.+++... . +.-+||+||++..
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 35677899999999999999999999999999999999998764 3799999999876532 1 2358999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000540 944 SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1433)
Q Consensus 944 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLD 1023 (1433)
|..+||+||++-....+.. +....+++++++++|+.+++.++++... ..||||||+|+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEec
Confidence 9999999999877666532 2334566777899999999999999873 369999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
||++|+||.+-..|.++++.+.+.|..|++|-|+.. +....|||.+++.+ |+++..|.+.
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 999999999999999999999999999999999997 78999999999997 7899999863
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=359.80 Aligned_cols=228 Identities=23% Similarity=0.353 Sum_probs=188.5
Q ss_pred CCCCCcceEEEeceEEEEEEecccccCCChhhhhhHHhhhhhhhhcccCCccccceeecceeEEEeCCeEEEEEcCCCCc
Q 000540 111 GIDLPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPGRLTLLLGPPASG 190 (1433)
Q Consensus 111 ~~~~~~v~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsG 190 (1433)
.+..+.=.++|+|++.+-. ++++||+++||+|++|+-+||+|+||||
T Consensus 344 ~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred CcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCCC
Confidence 5566666799999876521 2345999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHH
Q 000540 191 KTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1433)
Q Consensus 191 KSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1433)
|||++++|.++++ . +|+|.+||+++++..+ ++.||||||+ .++++.||.+||.+|.. ...++.+.++|
T Consensus 391 KSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-~~LFndTIl~NI~YGn~----sas~eeV~e~~ 461 (591)
T KOG0057|consen 391 KSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQD-SVLFNDTILYNIKYGNP----SASDEEVVEAC 461 (591)
T ss_pred HHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCc-ccccchhHHHHhhcCCC----CcCHHHHHHHH
Confidence 9999999999998 4 8999999999987654 5789999995 56667899999999852 33456666777
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCcccee
Q 000540 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFM 347 (1433)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illL 347 (1433)
++.... ++ ...|++.++|.||+++.. |||||||||++|||++.+|+|+++
T Consensus 462 k~a~~h---------------------------d~--i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 462 KRAGLH---------------------------DV--ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred HHcCcH---------------------------HH--HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEEe
Confidence 654321 11 446889999999998875 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHH
Q 000540 348 DEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 348 DEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 414 (1433)
|||||+||+.|..++++.+.+. ..++|+|+ +.|. ..+..-||+|++|++|++...|++++++.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~-IvH~-l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDV--MSGRTVIM-IVHR-LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHh--cCCCeEEE-EEec-chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999873 23455554 5454 45778899999999999999999999975
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=359.90 Aligned_cols=216 Identities=25% Similarity=0.377 Sum_probs=185.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++..+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788876652 34699999999999999999999999999999999998663 4799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.. ..++.+|||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987653211 12344555667899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..++|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999996 78899987
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=339.80 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=174.5
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 567888877631 123699999999999999999999999999999999998653 4799999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. .+++.++|++|++.+++.+||.||+.+....+. ......++.+.++++.+++.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 134679999999998999999999988754321 223344556889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 567789999999874
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=313.63 Aligned_cols=199 Identities=26% Similarity=0.389 Sum_probs=177.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1433)
..+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|+||+|+||.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 45999999999999999999999999999999999999998 9999999999865432 58899999999999
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+..||.||++|+.+..|.. ..+.+.++.++|+..||.+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~~---- 133 (223)
T COG2884 92 PDRTVYENVALPLRVIGKP----------------------------------PREIRRRVSEVLDLVGLKHKARA---- 133 (223)
T ss_pred ccchHhhhhhhhhhccCCC----------------------------------HHHHHHHHHHHHHHhccchhhhc----
Confidence 9999999999998876542 22345678889999999998874
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
.+..|||||||||+||||++.+|++|+-||||-+||+.++..|++.+.++.+ .+|+|++.+|+..-+..+--+++.|
T Consensus 134 -lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 4568999999999999999999999999999999999999999999998743 4788888899988888888899999
Q ss_pred cCCeEEEec
Q 000540 399 SNGQIVYQG 407 (1433)
Q Consensus 399 ~~G~iv~~G 407 (1433)
++|+++...
T Consensus 211 ~~Grl~~d~ 219 (223)
T COG2884 211 EDGRLVRDE 219 (223)
T ss_pred eCCEEEecc
Confidence 999998754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=327.97 Aligned_cols=217 Identities=26% Similarity=0.332 Sum_probs=178.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++.+|++..++... ....+|+|||+++.+||.+||+|+||||||||.++|+|..++ ..|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 367788876664321 112599999999999999999999999999999999998764 489999999775
Q ss_pred ccc----cccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCC
Q 000540 926 KQE----TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~ 998 (1433)
... .+.+.+.+|+||+. +.|..||++.|.=.... ...++.+ +++.++++.+||.+ ..++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 35778999999985 56889999988644332 2233333 33899999999976 44554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||||||+||||||+.+|++|+||||||+||+..+.+|+++|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 889999999987 47789999999997 79
Q ss_pred EEEECCCC
Q 000540 1078 EIYVGPLG 1085 (1433)
Q Consensus 1078 ~~y~G~~~ 1085 (1433)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=357.26 Aligned_cols=202 Identities=27% Similarity=0.374 Sum_probs=176.2
Q ss_pred ceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc--ccccceEEEeecCCCCCCCCC
Q 000540 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ--ETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 948 (1433)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999998663 47999999987643 223567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
|+||+.+.+.++. ....+.++.++++++.++|.+..++.+ +.||||||||++||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 233444556889999999998877764 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67789999999986 788998875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=353.33 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=178.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999998999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.|.++..+... .+...+++.+++.++|.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998665433210 0112345778899999988887664
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998743 35678888999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998854
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=360.47 Aligned_cols=214 Identities=22% Similarity=0.317 Sum_probs=186.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488899987763 34689999999999999999999999999999999998763 479999999876
Q ss_pred ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
... ..+|.+||++|++.++|.+||+||+.|+...+ ..+..+.++.++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23567999999999999999999999976533 2344555667899999999999888774 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999986 68889999999996 78888887
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.79 Aligned_cols=215 Identities=25% Similarity=0.351 Sum_probs=178.6
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++.. ...+.+|+|+|++|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc
Confidence 467777665310 0114699999999999999999999999999999999998653 47999999987642
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000540 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRL 1007 (1433)
Q Consensus 928 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1007 (1433)
.++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35678999999988888999999988654331 223344556889999999988777654 46999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEec-CcEEEEECCC
Q 000540 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPL 1084 (1433)
Q Consensus 1008 ~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-Gg~~~y~G~~ 1084 (1433)
+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.||++++|++ .|+++..+++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999864 4899999999986 57788999999995 4788887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.96 Aligned_cols=209 Identities=25% Similarity=0.410 Sum_probs=176.2
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH
Confidence 5677776652 34699999999999999999999999999999999997653 48999999987643
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000540 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRL 1007 (1433)
Q Consensus 928 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1007 (1433)
..++.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345678999999998899999999988654432 223344556889999999987776653 56999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1008 ~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998777899999999986 56778999999987 5666543
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=352.62 Aligned_cols=214 Identities=28% Similarity=0.366 Sum_probs=182.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 477888887663 34699999999999999999999999999999999997653 479999999875
Q ss_pred cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 926 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
.. ...++.+||++|++.+++.+||+||+.+.+.... .+..+.++.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2235679999999999999999999987554321 233334456788999999988777764 4699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999877999999999987 67788999999986 68889987
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.25 Aligned_cols=213 Identities=28% Similarity=0.367 Sum_probs=179.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 35677776652 34699999999999999999999999999999999998653 4799999997653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ...++.++|++|++.+++.+||+|++.+....+. ....+.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 1234578999999998999999999988654431 223334556889999999988777664 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999986 57788999999987 68888776
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=335.47 Aligned_cols=211 Identities=25% Similarity=0.385 Sum_probs=176.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 35677776653 24699999999999999999999999999999999998653 4799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.. ..++.++|++|++.+++..|++||+.+....+ .....+.++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 12357999999998888999999998865432 1233444556888999999988777664 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 57788999999987 6777765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=357.29 Aligned_cols=217 Identities=23% Similarity=0.285 Sum_probs=183.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++++++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788888876410 1135799999999999999999999999999999999998763 4799999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. ..++.+||++|++.+++.+||+||+.+....+. ....+.++.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 134679999999999999999999998754431 234444567889999999988777764 5699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57788999999986 7888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=360.40 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=179.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
..+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999865443 4689999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
.||+.|+.+.++.. ..+...+++++++.+||.+..+. .+.+
T Consensus 109 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~~~~-----~~~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEFAKR-----KPHQ 149 (377)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcC-----Chhh
Confidence 99999986543211 01123456788999999876664 4557
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998876543 56778889999999999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=340.33 Aligned_cols=215 Identities=26% Similarity=0.339 Sum_probs=178.5
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 4677776652 24699999999999999999999999999999999998653 47999999987643
Q ss_pred c---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 928 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------IDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 928 ~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
. . .++.++|++|++.+++.+||+||+.+....+.... ......++.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23458999999999999999999988654321110 012334556889999999987776653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 569999999999999999999999999999999999999999999999877999999999987 57788999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=357.07 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=186.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..++ ..|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488899887652 34689999999999999999999999999999999998763 479999999876
Q ss_pred cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.. ...+|.+||++|+..++|++||.||+.|....+ ..+..+.++++.++++.++|.+..++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999976543 2344556677899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 68899999999986 78889998
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=387.87 Aligned_cols=214 Identities=26% Similarity=0.417 Sum_probs=180.7
Q ss_pred cCCccccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCC
Q 000540 158 LPSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQH 234 (1433)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1433)
||+| +..+||+|+|++|++|+.+||+|||||||||.+.+|-+.++|+ +|.|.+||+++++.+. |+++|.|+|+
T Consensus 997 YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 997 YPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred CCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccC
Confidence 5655 4578999999999999999999999999999999999999998 9999999999998876 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
|.+| +.|+||||.||.+ . ...+.+.++++.....+ =+.+|++++||
T Consensus 1073 P~LF-~~TIrENI~YG~~--~--vs~~eIi~Aak~ANaH~-----------------------------FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1073 PVLF-NGTIRENIAYGSE--E--VSEEEIIEAAKLANAHN-----------------------------FISSLPQGYDT 1118 (1228)
T ss_pred chhh-cccHHHHHhccCC--C--CCHHHHHHHHHHhhhHH-----------------------------HHhcCcCcccC
Confidence 8665 5799999999921 1 12334444443332211 15689999999
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.||+++. +||||||||++||||+++||+||+|||.||+||+++..-+.+.|.+.. .++|+|++- |+..+.+.||.
T Consensus 1119 ~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1119 RVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNADV 1193 (1228)
T ss_pred ccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcCCE
Confidence 9999887 699999999999999999999999999999999999999999998753 455665543 46788899999
Q ss_pred EEEEcCCeEEEecCHHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~~ 414 (1433)
|+|+++|+|+++|++++++.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999999985
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=358.80 Aligned_cols=214 Identities=25% Similarity=0.351 Sum_probs=183.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888887653 34699999999999999999999999999999999998663 479999999876
Q ss_pred ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
... ..++.+||++|+..+++.+||+||+.|....+. ....+.++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 234679999999999999999999998765431 234445567899999999998877764 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67889999999996 78888887
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=357.51 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=179.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999999865433 3679999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+....... ....+...+++++++.+||++..+. .+..
T Consensus 92 ~eni~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------------------------------PNAAAIKAKVTQLLEMVQLAHLADR-----YPAQ 136 (353)
T ss_pred HHHHHhhhhhcccccC------------------------------CCHHHHHHHHHHHHHHcCCchhhhC-----Chhh
Confidence 9999998643210000 0001123456788999999877664 4557
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3356778899999999999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=356.19 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=177.9
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc---cc----cceEEEeecCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE---TF----ARISGYCEQNDI 942 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~ 942 (1433)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .+ ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 445799999999999999999999999999999999998763 589999999886532 12 567999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000540 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1433)
Q Consensus 943 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlL 1022 (1433)
++|.+||+||+.|..... ....++.++++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2345556678899999999988888764 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||||++||+.++..+++.++++.++ |+|||++||++. ++...+|++++|++ |+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999999754 899999999986 57889999999986 688999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=339.08 Aligned_cols=216 Identities=27% Similarity=0.377 Sum_probs=179.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 67888887763 24699999999999999999999999999999999998653 4799999998754
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.. ..++.++|++|++.+++.+||+||+.+....+.. ........++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 2245689999999888899999999886543211 00122333456788999999987777654 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999765 899999999986 57788999999986 68888887
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=360.39 Aligned_cols=218 Identities=26% Similarity=0.343 Sum_probs=183.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 367888887653 35799999999999999999999999999999999998663 479999999876
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.+||++|+..+++.+||+|++.++...... ........++.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 23467799999999998999999999875422110 01112234567899999999998888764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||+.|||||+++|++|||||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57789999999986 788899
Q ss_pred CCCC
Q 000540 1082 GPLG 1085 (1433)
Q Consensus 1082 G~~~ 1085 (1433)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9863
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=338.32 Aligned_cols=213 Identities=26% Similarity=0.352 Sum_probs=178.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 35677776653 34699999999999999999999999999999999998653 4799999998753
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
.. . .++.++|++|++.+++.+||+||+.+....+. ......++.++++++.+++.+..++.+ ..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23468999999999999999999987643321 223334456788999999988777653 569999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999986 68889999999986 6888888
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 75
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.89 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=178.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5677888766311 0112699999999999999999999999999999999998653 4799999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988899999999987654331 233444567889999999988777654 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999987 5666543
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=335.75 Aligned_cols=208 Identities=28% Similarity=0.397 Sum_probs=172.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 3567787765310 0114699999999999999999999999999999999998653 4799999998754
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000540 927 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 927 ~~~-------~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1433)
... .++.++|++|++.+++.+||+||+.+....+. ......++.++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 211 23579999999999999999999998754432 223334556889999999988777654 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1000 SgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.||++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999976 5899999999986 34 489999999875
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=321.14 Aligned_cols=207 Identities=24% Similarity=0.374 Sum_probs=173.2
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1433)
+.++|+|||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 367999999999999999999999999999999999999987 99999999999887653 56999999999999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-Ccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTVVGD 318 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vG~ 318 (1433)
+|||+|||..++..... ... . ....|.+.+.+- |.+-.++.-|
T Consensus 92 ~LTVeENL~~g~~~~~~-~~~----------~------------------------~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 92 RLTVEENLLLGAYARRD-KEA----------Q------------------------ERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred hCcHHHHHhhhhhcccc-ccc----------c------------------------cccHHHHHHHChhHHHHhcCccc-
Confidence 99999999987643211 000 0 000233333332 3333444444
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
.|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+ .++.+|+.+.|+.....+++|+.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK-EGGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEE
Confidence 5999999999999999999999999999999999999999999999865 34578888999999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 000540 399 SNGQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1433)
.+|+|++.|+.+++..
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=338.63 Aligned_cols=207 Identities=27% Similarity=0.357 Sum_probs=173.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 35999999999999999999999999999999999999988 999999999876532 235799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++.+...... ..+....++.+++.+||++..++.+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLS---------------------------------EEEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred CCCcHHHHHHHHHhhccCCC---------------------------------HHHHHHHHHHHHHHcCCchhhcCCh--
Confidence 99999999998643210000 0011234567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+..++.++||+|++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999987543 3466777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=349.41 Aligned_cols=212 Identities=24% Similarity=0.361 Sum_probs=182.8
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++.++. ++.+|+|+||++++||++||+|||||||||||++|+|...+ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67788877653 35699999999999999999999999999999999998663 4799999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ...++.+||++|++.+++.+||.||+.+.+.++. ...++.++.++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2235679999999999999999999998765542 233444556889999999998888764 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||++||+||+++|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999987 68889999999986 788999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=332.77 Aligned_cols=207 Identities=30% Similarity=0.389 Sum_probs=174.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 35677776652 24699999999999999999999999999999999998653 4899999998754
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 927 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
. ...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 2 2234578999999988889999999988654321 1 1345778999999988777654 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877899999999986 56678999999986 6776654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=337.19 Aligned_cols=214 Identities=23% Similarity=0.273 Sum_probs=176.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCC-----CCceEEEEEEEc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNIKVS 921 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~ 921 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35677776652 246999999999999999999999999999999999976 4 357999999
Q ss_pred CccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
|.+... ..+++.++|++|++.++ .+||+||+.+....+. .....+.++.++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 22356799999998887 7999999988654331 11222234567889999999876665421 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++ .+.+.||++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999876 99999999986 57788999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 88888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=351.12 Aligned_cols=206 Identities=26% Similarity=0.359 Sum_probs=177.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 1357999999999999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.+.++..+... .+...+++++++.+||++..++.+ +
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPV-----G 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCch-----h
Confidence 9999998765433110 011234677899999988777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|++++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 3 5677888999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=334.82 Aligned_cols=221 Identities=37% Similarity=0.604 Sum_probs=179.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC-CceEEEEEEEcCccC
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNIKVSGYPK 925 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~ 925 (1433)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+..|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4578888776421 013579999999999999999999999999999999999764 123579999999876
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE-VMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.....++.++|++|++.+++.+||+||+.+......+...........+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544456779999999999999999999998765433222122222334555 88899988776665 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.||++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999997 6777654
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=352.65 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=176.8
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1433)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999998 9999999999865432 35799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++.+..+... .+...+++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 89999999998764432110 011234677899999987776544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .++++++++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999987643 3567777899999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=313.43 Aligned_cols=207 Identities=30% Similarity=0.434 Sum_probs=177.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1433)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999887664 5679999998888889
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+|-+.+|+.-.+.+.. ..+...+++.+|...++.+.+. +..
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~-----R~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAG-----RDY 133 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhc-----cch
Confidence 999999998754322111 0122345677788888887765 445
Q ss_pred ccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 322 RGISGGQRKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
+.|||||||||.+||.|+. ++++||||||||+||......+++..|++++. +..|+.+.|+..-...+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhee
Confidence 6899999999999999974 44689999999999999999999999999874 366777889999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|.+||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=357.58 Aligned_cols=206 Identities=27% Similarity=0.393 Sum_probs=177.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.|+.+..+... .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999999865432110 012234677899999987776544 57
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++.+++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 356777789999999999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
++.|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=337.45 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=179.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56778877653 2469999999999999999999999999999999999865 34799999998764
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 927 Q-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
. ...++.++|++|++.+++.+||+||+.+...... .....+.++.+.++++.+|+.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 1235579999999988889999999987542111 1233444566889999999987777653 56999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 56778999999986 688898
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=332.46 Aligned_cols=191 Identities=29% Similarity=0.366 Sum_probs=162.2
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCC-CCCCCCHH
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI-HSPFVTVY 950 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 950 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999997653 47999999987643334567999999974 34467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000540 951 ESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1433)
Q Consensus 951 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD 1030 (1433)
||+.+...... . .++.+.++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543211 1 1245788999999988777764 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++| ++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G-~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANG-AI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999777999999999986 567789999999974 54
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=337.33 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=180.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.. .+...+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4677887765310 0112699999999999999999999999999999999998663 4799999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999999999999988654331 233344556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999986 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=333.06 Aligned_cols=206 Identities=26% Similarity=0.354 Sum_probs=173.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 56778877652 124699999999999999999999999999999999998653 4799999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. .+++.++|++|++.+++.+|+.||+.+....+. ......++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 234679999999988889999999988754321 223334556889999999987666653 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999875
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=342.95 Aligned_cols=204 Identities=24% Similarity=0.298 Sum_probs=173.4
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc---c----ccceEEEeecCC
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE---T----FARISGYCEQND 941 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~ 941 (1433)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4556799999999999999999999999999999999998653 479999999875421 1 135689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEE
Q 000540 942 IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021 (1433)
Q Consensus 942 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLl 1021 (1433)
.+++.+||+||+.+...... ......++.++++++.++|.+..++.+ ..||||||||++||+||+.+|++||
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99989999999988654321 223344556889999999988777764 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1022 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1022 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999998754 899999999986 57788999999986 688888875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=345.17 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=180.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67888888764210 0124699999999999999999999999999999999998663 4899999998864
Q ss_pred cc-----cccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000540 927 QE-----TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK--PLKQSLVGLPGVSG 998 (1433)
Q Consensus 927 ~~-----~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 998 (1433)
.. ..++.+||++|++. .+...||+||+.|..... ....++.++.++++++.+||. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 31 34567999999863 334579999999865432 234555566789999999997 556655 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 56788999999987 78
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 8888875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=339.43 Aligned_cols=216 Identities=26% Similarity=0.310 Sum_probs=176.2
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 4667776542 114699999999999999999999999999999999998653 47999999987542
Q ss_pred c------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 928 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 928 ~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
. ..++.++|++|++.+++.+||+||+.+...... .........++.+.++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 234678999999998899999999987532110 001111233456788999999987766653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999987 57779999999996
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 688888875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.81 Aligned_cols=221 Identities=27% Similarity=0.373 Sum_probs=188.6
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1433)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3467999999999999999999999999999999999999998 99999999999887664 3578899999999
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
++|||.||+..++..+.. +...... + ....+..+..+++..+|+.+||.+.+|+..|
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~----------~---------~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGR----------P---------RARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhcc----------c---------cchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 999999999998764421 0000000 0 0001123445677889999999999998877
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ ..+.+++.|-|+..-++++||||+||
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 4999999999999999999999999999999999999999999998754 45688888999999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 000540 399 SNGQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1433)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=368.79 Aligned_cols=219 Identities=26% Similarity=0.400 Sum_probs=182.6
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcC
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1433)
....|+|+||+|.|+.. ++.++|+|+||+|+|||.|||+||||+||||+.++|....+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 34579999999999865 35679999999999999999999999999999999998776 4589999999
Q ss_pred ccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--HH-HcCCcccccccccCCCC
Q 000540 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEV--ME-LVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 923 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~--l~-~l~L~~~~~~~vg~~~~ 996 (1433)
+|+++ ..+++.+|+|.|+|.++. -||+||+.|+.. +.+.++....++.+ -+ ..++.+-.|+.||..|
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG- 602 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG- 602 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc-
Confidence 99765 456789999999999985 599999998743 33333322211111 11 1356667889999865
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||||++||+||||||+||.||+++...|.+.|.++.+ ++|||++.|+.| ..+.+|+|+++++ |
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-G 678 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-C
Confidence 47999999999999999999999999999999999999999999988864 699999999976 5788999999986 7
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
+++..|.-
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 99999853
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=366.23 Aligned_cols=217 Identities=29% Similarity=0.418 Sum_probs=179.8
Q ss_pred cCCCCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEE
Q 000540 840 LPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIK 919 (1433)
Q Consensus 840 ~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 919 (1433)
.+..+..++|+|++|++.. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|+.++ ..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 3445568999999999863 234699999999999999999999999999999999998764 589999
Q ss_pred EcCccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccc
Q 000540 920 VSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-------PLKQS 989 (1433)
Q Consensus 920 i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~ 989 (1433)
+||++..+ ..+|+.+|||+|++.++ +-|++||+.++. ++.+.+ .+.++++..|.. .-.++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 56789999999998876 469999998642 233322 234444444433 33456
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEE
Q 000540 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v 1069 (1433)
.+|.. ..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ ..+.||++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 66654 46899999999999999999999999999999999999999999999985 5899999999986 67899999
Q ss_pred EEEecCcEEEEECCC
Q 000540 1070 FLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1070 ~~L~~Gg~~~y~G~~ 1084 (1433)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99986 799999985
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=344.55 Aligned_cols=204 Identities=21% Similarity=0.242 Sum_probs=153.2
Q ss_pred CceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCc
Q 000540 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY 923 (1433)
Q Consensus 844 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1433)
|..+.+.+|++.++. +.-+++++++..++.-+..+++|+||+||||+++++.|..++ ..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc-
Confidence 446888888876542 111689999999999999999999999999999999985542 355555543
Q ss_pred cCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000540 924 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 1002 (1433)
+++++|-.|...-+-.+.|.+--.. ...+ |.. . ++.+++-+..+||.. ++... +.+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~-pG~-~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF-PGK-T----EEEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHHHHH-HHhC-CCC-C----HHHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 4568999997654444444433222 2222 111 2 233567788899975 22221 4679999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.+. +-..|+++++.++|...-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999876 4579999999763 667899999999877666666
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
..
T Consensus 563 ~~ 564 (582)
T KOG0062|consen 563 GI 564 (582)
T ss_pred cH
Confidence 53
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=319.04 Aligned_cols=203 Identities=24% Similarity=0.374 Sum_probs=185.3
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCC
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 948 (1433)
.+++.+++||||.++||++++++|+|||||||++++|.|...+ .+|.|.++|.+.++.. +.+|||.|.+..++|.+|
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 3677899999999999999999999999999999999998773 5899999999987643 456899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
|.|.|.|-|.++. ++.++.+..++.+|+.+++......++ +.||.|++|++.+-.+++++|++++||||+||
T Consensus 89 v~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999998864 567777788999999999999887774 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|||.+.+.+.+.+.+++++|.|||+++|+++ .+-++||++++|++ |+.|.+|++
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 9999999999999999999999999999997 68899999999987 678888886
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=331.30 Aligned_cols=205 Identities=25% Similarity=0.365 Sum_probs=172.3
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 4677776652 124699999999999999999999999999999999997653 47999999987532
Q ss_pred c------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 928 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 928 ~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
. ..++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 234679999999999999999999988654332 233444556889999999988777653 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.||++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999986 566789999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=332.61 Aligned_cols=214 Identities=24% Similarity=0.380 Sum_probs=178.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 356777766531 114699999999999999999999999999999999998653 4799999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ..+++.++|++|++.+++.+|++||+.+....+. ....+.++.++++++.++|.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654432 223334456789999999987777653 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999987 56778999999986 688888875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.94 Aligned_cols=213 Identities=26% Similarity=0.356 Sum_probs=177.9
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++. .+.+|+|+|++|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 56777766531 14699999999999999999999999999999999998653 47999999987532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHH
Q 000540 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP--LKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 928 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgG 1002 (1433)
...++.++|++|++.+++.+||+||+.+....+. .+....++.+.++++.+++.+ ..++. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2334578999999999999999999988654321 233444556889999999985 55554 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999986 57788999999997 688888
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.83 Aligned_cols=214 Identities=27% Similarity=0.362 Sum_probs=179.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887653 24699999999999999999999999999999999998653 4799999998653
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000540 927 Q-----------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPG 995 (1433)
Q Consensus 927 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1433)
. ...++.++|++|++.+++..|+.||+.+...... ....+..++.++++++.+++.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234578999999988889999999987543211 123344456688899999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.||++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999986
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 688888874
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=333.15 Aligned_cols=211 Identities=28% Similarity=0.414 Sum_probs=174.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 35677776542 34699999999999999999999999999999999998653 4799999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000540 927 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.+..+.++++.+ ++.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24568999999999999999999988654321 122334566778887 466655654 356999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57788999999986 688888
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=339.34 Aligned_cols=217 Identities=25% Similarity=0.270 Sum_probs=176.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 45677776542 124699999999999999999999999999999999998653 4799999998753
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000540 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEIDSETRKMFIGEVMELVELKPLKQSLVGLPG 995 (1433)
Q Consensus 927 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1433)
. ..+++.++|++|++.+++.+||+||+.+...... .........++++.++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1235679999999988999999999976421100 001112233456788999999987766653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 579999999999999999999999999999999999999999999998754 899999999986 56788999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 678888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=331.67 Aligned_cols=217 Identities=24% Similarity=0.309 Sum_probs=178.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 37889998876411 0114699999999999999999999999999999999998653 489999999876
Q ss_pred cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000540 926 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1433)
.... . ++.++|++|++.+++.+|++||+.+....+ .....+.++.++++++.++|.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 1 256899999998889999999998865432 1223344567889999999988776653 56
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 44689999986 68
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 8888875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=335.89 Aligned_cols=212 Identities=25% Similarity=0.341 Sum_probs=177.8
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56778876652 24699999999999999999999999999999999998653 4799999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000540 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006 (1433)
Q Consensus 927 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1433)
. ..+.+||++|++.+++.+||.||+.+....+ .....+.++.+.++++.++|.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998764432 1233344556889999999987766653 5699999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEec-CcEEEEECCC
Q 000540 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPL 1084 (1433)
Q Consensus 1007 l~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-Gg~~~y~G~~ 1084 (1433)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57788999999985 5788887764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=340.92 Aligned_cols=215 Identities=25% Similarity=0.334 Sum_probs=180.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ +...+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 377888887763 123599999999999999999999999999999999997653 479999999876
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.+||++|++. .++..||.||+.|..... .......++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223457999999863 445689999998864321 2334444556889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999986 688888
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 885
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=339.00 Aligned_cols=215 Identities=20% Similarity=0.293 Sum_probs=180.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|||+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478899987753 34699999999999999999999999999999999998653 479999999875
Q ss_pred ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000540 926 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 926 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1433)
... ..++.++|++|+..+++.+||.||+.+...... ..+....+..+.++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 124568999999988899999999987543211 1223334456788999999988777654 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 1000 SgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999986 788
Q ss_pred EEECCC
Q 000540 1079 IYVGPL 1084 (1433)
Q Consensus 1079 ~y~G~~ 1084 (1433)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.33 Aligned_cols=218 Identities=26% Similarity=0.395 Sum_probs=179.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC-CC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN-HI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1433)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 45999999999999999999999999999999999999998 999999999986532 2367999999853 45
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc--ccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTVV 316 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1433)
...||+||+.|+....+.. ..+...+++++++.+||+ +..|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~--- 139 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKD--- 139 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhcc---
Confidence 5689999999865432210 011223467889999996 4445
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+.++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ ..+++|++++|+..++.++||+|+
T Consensus 140 --~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 140 --KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 44567999999999999999999999999999999999999999999998754 335677888999999999999999
Q ss_pred EEcCCeEEEecCHHHHHH---HHHhcCCCCCC
Q 000540 397 LLSNGQIVYQGPRELVLE---FFESMGFKCPK 425 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1433)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999998753 23445655544
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=348.83 Aligned_cols=206 Identities=25% Similarity=0.371 Sum_probs=177.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|+..+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999876432 2467999999988889999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.|.....+... .+....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987554332100 0112235667889999988887665
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
+||||||||++||+||+++|++|+|||||+|||+.++.++.+.|+++.. . +.+|++++|+..++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 3 5677888999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
++++|+++++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=343.60 Aligned_cols=218 Identities=24% Similarity=0.301 Sum_probs=179.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
+.++|+++.++.. ......+|+|||++|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 6788999887421 00123599999999999999999999999999999999998664 3699999886531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000540 927 ---------------------------QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978 (1433)
Q Consensus 927 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l 978 (1433)
....++.+|||+|++ ..+...||+|++.|..... ....++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356799999985 3344579999999865432 234555566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000540 979 ELVELK-PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057 (1433)
Q Consensus 979 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1057 (1433)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1058 PSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1058 ~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+. .+.+.||++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57789999999986 688999885
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.30 Aligned_cols=205 Identities=24% Similarity=0.340 Sum_probs=172.2
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ .+.+|+++|+++++|++++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5677776653 24699999999999999999999999999999999998653 47999999987531
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 928 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 928 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2245679999999998999999999987643111 1223344556788999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877899999999986 577889999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.69 Aligned_cols=204 Identities=27% Similarity=0.378 Sum_probs=172.4
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCCCCC
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQNDIHS 944 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~ 944 (1433)
+++.++|+|||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++... ..++-++||||....|
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 3567899999999999999999999999999999999998763 379999999987542 2455699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000540 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE-LKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLD 1023 (1433)
|.+||+|||..++..+.. ++..+..++++.+.+- |.+.+++..| .|||||||.++|||||+.+|++|+||
T Consensus 91 ~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 91 PRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred hhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999987655422 1111222667777763 6666676655 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|||.||-|.-.+.|.++|+++.++ |.||+.+-++.. ...+.+||.++|.+ |++++.|+..
T Consensus 162 EPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 162 EPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 999999999999999999999865 779999988876 47789999999996 7999999863
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=327.95 Aligned_cols=209 Identities=33% Similarity=0.478 Sum_probs=174.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 35677776652 246999999999999 9999999999999999999998653 4799999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ...++.++|++|++.+++.+||.||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 1235678999999999999999999988654431 223333456789999999988777654 56999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999976 599999999986 46678999999997 5766554
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=342.68 Aligned_cols=218 Identities=24% Similarity=0.291 Sum_probs=179.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++... .....+|+|||++|++||+++|+||||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889998874210 0124599999999999999999999999999999999998653 4799999998763
Q ss_pred c-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 Q-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
. ...++.+|||+|++. .+...||+||+.|+.... ....++.++.++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 134567999999863 233579999999875432 233444456789999999996 556655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 899999999987 57788999999986 7
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 88999875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=327.39 Aligned_cols=224 Identities=23% Similarity=0.329 Sum_probs=195.3
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1433)
....-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++...+. ++.+++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3345789999999999999999999999999999999999998 9999999999876543 36799999999
Q ss_pred CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000540 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTV 315 (1433)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1433)
.++|+.||.||..||.+.+|++.. +.+.++.+.|+..||+..++.
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~- 160 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADK- 160 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhc-
Confidence 999999999999999999887431 233456778999999998885
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
++++||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++-.. -+.+|+.++|+.+|.+++.|||
T Consensus 161 ----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~-l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 161 ----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK-LKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred ----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH-hCCeEEEEecCHHHHHhccceE
Confidence 45679999999999999999999999999999999999999999888776544 4567788999999999999999
Q ss_pred EEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhc
Q 000540 396 ILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~ 437 (1433)
.+|.+|+||..|+++|++. .|...-+++|...+.
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v~ 269 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNVD 269 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcCC
Confidence 9999999999999999964 466666777777653
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=341.32 Aligned_cols=218 Identities=26% Similarity=0.333 Sum_probs=179.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 6788999887411 00113599999999999999999999999999999999998653 4799999998863
Q ss_pred c-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 Q-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
. ..+++.+||++|++. .+...||.|++.|..... ..+..+.++++.++++.++|. +..++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 124567999999862 333469999999875432 234455566788999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999986 57788999999986 78
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 222 i~~~g~~ 228 (288)
T PRK13643 222 IISCGTP 228 (288)
T ss_pred EEEECCH
Confidence 8999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=344.96 Aligned_cols=218 Identities=24% Similarity=0.333 Sum_probs=179.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 589999998874210 0123599999999999999999999999999999999998663 479999999765
Q ss_pred cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000540 926 KQ-------------------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984 (1433)
Q Consensus 926 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 984 (1433)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3454 59999998864321 233444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 000540 985 -PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1063 (1433)
Q Consensus 985 -~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 1063 (1433)
+..++. +..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 3579999999999999999999999999999999999999999999998777999999999986 467
Q ss_pred HhcCEEEEEecCcEEEEECCC
Q 000540 1064 EAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1064 ~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+.||++++|++ |++++.|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 788999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=330.59 Aligned_cols=205 Identities=27% Similarity=0.377 Sum_probs=173.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHIG 239 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1433)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 9999999998764321 357999999988888
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+|++||+.++....+... .+....++.+++.+||++..+..
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 137 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAY---- 137 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcC----
Confidence 8999999988654321100 01122456788999998776654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ..++++++++|+..++.+++|++++|+
T Consensus 138 -~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 -PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999998754 335677778888889999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=335.21 Aligned_cols=215 Identities=21% Similarity=0.255 Sum_probs=179.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478889887763 24699999999999999999999999999999999998653 479999999765
Q ss_pred cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000540 926 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-Q 988 (1433)
Q Consensus 926 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 988 (1433)
.. ..+++.++|++|++.+++.+||+||+.+...... .......++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1235679999999999999999999987542111 123344556788999999998753 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCE
Q 000540 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1068 (1433)
Q Consensus 989 ~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~ 1068 (1433)
+. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3579999999999999999999999999999999999999999999999877999999999986 56778999
Q ss_pred EEEEecCcEEEEECCC
Q 000540 1069 LFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1069 v~~L~~Gg~~~y~G~~ 1084 (1433)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999987 688888875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.25 Aligned_cols=200 Identities=28% Similarity=0.421 Sum_probs=168.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 35999999999999999999999999999999999999987 9999999998764332 3579999999888889999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.++....+... .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999988653221100 001123567788999987666544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|++++|+..++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987543 356677788999999999999999999999
Q ss_pred EEec
Q 000540 404 VYQG 407 (1433)
Q Consensus 404 v~~G 407 (1433)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.00 Aligned_cols=199 Identities=27% Similarity=0.414 Sum_probs=163.7
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCC--CCCCH
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHS--PFVTV 949 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 949 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 4799999998654 2356789999998763 34899
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000540 950 YESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 950 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsg 1028 (1433)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00111233456889999999987777654 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999777899999999986 57788999999975 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=308.02 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=182.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|...+ ..|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 56678888863 46799999999999999999999999999999999997653 3799999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
. ....+.-+..||+..+....||+|-+.++..-... .....+..+.++++|...++.+++.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 23456679999999988789999999987532211 1122244456789999999999887753 5699999
Q ss_pred HHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 1004 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 1004 rqRl~iA~aL~~------~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...+||||++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 456999999999999999999999999999999999999999985 6788999999996 79
Q ss_pred EEEECCCC
Q 000540 1078 EIYVGPLG 1085 (1433)
Q Consensus 1078 ~~y~G~~~ 1085 (1433)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=328.97 Aligned_cols=205 Identities=29% Similarity=0.378 Sum_probs=173.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35999999999999999999999999999999999999988 999999998865321 1357999999988888999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.+..+..+... .+....++.+++.+||++..++.+ +
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999998654322100 011234677899999987766554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+..++.+++|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999987543 24567778999999999999999999999
Q ss_pred EEEecCHHHH
Q 000540 403 IVYQGPRELV 412 (1433)
Q Consensus 403 iv~~G~~~~~ 412 (1433)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=333.21 Aligned_cols=214 Identities=23% Similarity=0.299 Sum_probs=176.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSGY 923 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1433)
++++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788877653 246999999999999999999999999999999999976531 12799999998
Q ss_pred cCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000540 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK----PLKQSLVGLP 994 (1433)
Q Consensus 924 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 994 (1433)
+... ...++.++|++|++.+++ .|++||+.+....+. .....+.++.++++++.+++. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 123567999999988888 999999988654431 122334455688999999997 444544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999986 57788999999997
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 688888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=330.98 Aligned_cols=217 Identities=24% Similarity=0.273 Sum_probs=171.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|...+ ..|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5677887765310 0013699999999999999999999999999999999998653 4799999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 Q------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
. ..+++.++|++|++ .+.+.+||+||+.+........ ......+..++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 13456799999998 4567899999998765433211 11111122235788999985 4555543 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999765 899999999986 56678999999986 5
Q ss_pred EEEEEC
Q 000540 1077 YEIYVG 1082 (1433)
Q Consensus 1077 ~~~y~G 1082 (1433)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 666544
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.19 Aligned_cols=193 Identities=26% Similarity=0.372 Sum_probs=163.0
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc---ccccceEEEeecCCC-CCCCC
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDI-HSPFV 947 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 947 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999997653 47999999987542 224567899999974 36678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000540 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1433)
Q Consensus 948 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTs 1027 (1433)
|++||+.+....+ .......++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456788999999987766653 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
|||+.++..+.+.|++++++|+|||++||++. ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 567789999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=328.43 Aligned_cols=206 Identities=24% Similarity=0.317 Sum_probs=172.8
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56778877652 124699999999999999999999999999999999998653 4799999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. .+++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888999999998865432 1233344456788999999987766653 5699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++|
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDG 213 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999777899999999987 567789999999974
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=333.31 Aligned_cols=214 Identities=27% Similarity=0.365 Sum_probs=179.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 66778876652 34699999999999999999999999999999999998653 4799999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
.. ..++.++|++|++.+++.+||.||+.+....+. ....++.+..++++++.+++.+..+..+ +.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 21 134568999999988888999999987543321 1223344566889999999987666553 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.||++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 57788999999986 6888888
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=339.47 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=180.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ +++.+|+|||++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 588999998763 124699999999999999999999999999999999998653 479999999876
Q ss_pred cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000540 926 KQ-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 926 ~~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1433)
.. ..+++.+||++|++. .+...||+||+.+..... ..+..+.++.++++++.++|.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999874 234589999998764322 2234444567889999999988777764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 1000 SgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46678999999987 688
Q ss_pred EEECCC
Q 000540 1079 IYVGPL 1084 (1433)
Q Consensus 1079 ~y~G~~ 1084 (1433)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=317.43 Aligned_cols=208 Identities=27% Similarity=0.355 Sum_probs=180.5
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcccc----ccceEEEeecCCCCC
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET----FARISGYCEQNDIHS 944 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~ 944 (1433)
.+...+++|||+++++||+++|+||||||||||+|+|+|..++ ..|+|.++|.++.... .+.-++.-+|...++
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3677899999999999999999999999999999999998764 4799999999875422 234578899999999
Q ss_pred CCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000540 945 PFVTVYESLLYSAWLRL--------PPE-IDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~ 1015 (1433)
+.+||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|...| +||+||||||.|||||+.
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhc
Confidence 99999999998755331 111 1234556678899999999999999865 599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1016 ~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-||++ -++.+||||+||+. |+++..|++.
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 99999999999999999999999999999874 799999999998 48999999999986 7899999874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=350.77 Aligned_cols=206 Identities=29% Similarity=0.426 Sum_probs=167.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1433)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.++... +++++||+|++. ++..|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~-lf~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPY-LFAGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCc-ccccc
Confidence 6899999999999999999999999999999999999998 9999999999887654 588999999874 55679
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
+||||.++... ...+.+.++.++. .+.+.+.-++..||.+|+.+ +
T Consensus 411 ireNi~l~~~~----~s~e~i~~al~~a------------------------------~l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARPD----ASDEEIIAALDQA------------------------------GLLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCCc----CCHHHHHHHHHHh------------------------------cHHHhhcCCCcccchhccCC-C
Confidence 99999997521 1111111111110 11222233567799999755 5
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
+|||||+|||++||||+++++++++||||++||.+|+..|.+.|.++++ .+++++++|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcC-hHHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999998764 3455556554 55667899999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=336.79 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=175.1
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1433)
.+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 356999999999999999999999999999999999999987 9999999998754321 246999999988
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
+++.+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCc
Confidence 8889999999998754322100 011224567889999987777655
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.++++++|+..++.+++|+++
T Consensus 159 -----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 159 -----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 469999999999999999999999999999999999999999999987643 35667778889899999999999
Q ss_pred EEcCCeEEEecCHHHHH
Q 000540 397 LLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++++.|+++++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=310.47 Aligned_cols=209 Identities=21% Similarity=0.353 Sum_probs=180.9
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1433)
++++++|||+.+++||+++++|||||||||...++.|+.+|+ +|+|.+||.+++.+... .-+||+||+...|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 457999999999999999999999999999999999999999 99999999999877553 35899999999999
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+||+|||.-..+.+.... ...+.+.+.+.+|+.++|.|++++.-
T Consensus 93 ~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a--- 137 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKA--- 137 (243)
T ss_pred cCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCcc---
Confidence 9999999987665432110 00122345788999999999998643
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
-.||||||+|+-|||||+.+|+.++||||++|+||.+..+|.+.++.+.. .+.-|++.-|.-.|+..++||.++++
T Consensus 138 --~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 138 --YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred --cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEe
Confidence 36999999999999999999999999999999999999999999988754 35566667889999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 000540 400 NGQIVYQGPRELVLE 414 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1433)
+|++..+|+++++.+
T Consensus 214 ~G~vla~G~p~ei~~ 228 (243)
T COG1137 214 DGKVLAEGSPEEIVN 228 (243)
T ss_pred cCeEEecCCHHHHhc
Confidence 999999999999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=329.87 Aligned_cols=212 Identities=28% Similarity=0.394 Sum_probs=176.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 46677776652 34699999999999999999999999999999999998653 4799999998753
Q ss_pred cc--cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~~--~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
.. ...+.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22346899999998888999999998765432 1223334456788999999987776654 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 34 45999999986 67888876
Q ss_pred C
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=343.10 Aligned_cols=230 Identities=20% Similarity=0.233 Sum_probs=184.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
-++++|++..++............+...+|+|||++|++||++||+|+||||||||+++|+|.... .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 488899987775321000000011235799999999999999999999999999999999998763 479999999876
Q ss_pred ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000540 926 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGV 996 (1433)
Q Consensus 926 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1433)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886543211 234555667788999999994 345554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
..||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999986 57778999999986
Q ss_pred cEEEEECCCC
Q 000540 1076 GYEIYVGPLG 1085 (1433)
Q Consensus 1076 g~~~y~G~~~ 1085 (1433)
|+++..|+..
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 7899999853
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=333.65 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=175.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 488999988763 24699999999999999999999999999999999998653 479999998764
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
. ..++.++|++|++.+++.+||+||+.+... . ..+..+.++++.++|.+..++.+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235678999999988888999999987421 0 12345778999999988776653 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+.+.||++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 56788999999986 678887764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=342.87 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=174.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999988 999999999875322 2467999999988888999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.+..+..+... .+....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543321100 0011235667889999887776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 3 5677888999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=339.32 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=181.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++.. +.+.+|+|+|++|++||++||+|+||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37889998876421 123599999999999999999999999999999999998653 479999999876
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865332 2344455567899999999998777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++ ..||++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 34 67999999986 68888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=339.93 Aligned_cols=218 Identities=22% Similarity=0.318 Sum_probs=178.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|...+ ..|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367889988874210 0123599999999999999999999999999999999998663 479999999876
Q ss_pred cc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000540 926 KQ-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPG 995 (1433)
Q Consensus 926 ~~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 995 (1433)
.. ...++.+|||+|++ .+++ .||+||+.|..... ..+..+.++.+.++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 12456799999986 3444 59999998864332 234445556788999999996 566654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999975 4899999999986 57788999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 688888875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=337.16 Aligned_cols=217 Identities=23% Similarity=0.329 Sum_probs=177.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1433)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999998 9999999999865322 35799999986 36778
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.|+.+..+.. ..+...+++++++.+||++..+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~----- 137 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------------------------------HEEMKERVNEALELVGMQDFKERE----- 137 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCC-----
Confidence 89999999875432211 011223467789999998766654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+..++ ..+|+|++|++
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999987543 356677778888887 58999999999
Q ss_pred CeEEEecCHHHHHH---HHHhcCCCCCC
Q 000540 401 GQIVYQGPRELVLE---FFESMGFKCPK 425 (1433)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1433)
|+++..|+++++.. .++..|+.+|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 99999999988753 34445555444
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.80 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=177.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-------CccceEEEecCCC-C
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-N 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1433)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999999988 99999999987531 1135799999985 2
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1433)
.+...||+||+.|+.+..+.. ..+...+++.+++.+||+ +..++
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 141 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLAR- 141 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhhC-
Confidence 455679999999875432211 011123467789999996 44554
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+..++.++||+|
T Consensus 142 ----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 142 ----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEE
Confidence 3457999999999999999999999999999999999999999999998754 33567778899999999999999
Q ss_pred EEEcCCeEEEecCHHHHH---HHHHhcCCCCCC
Q 000540 396 ILLSNGQIVYQGPRELVL---EFFESMGFKCPK 425 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 425 (1433)
++|++|++++.|+++++. +.+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999998874 234444555444
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=331.05 Aligned_cols=215 Identities=26% Similarity=0.371 Sum_probs=174.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2459999999889999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++....+.. . .... . .. ....+....++++++.+||++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~-~------~~~~---~---~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 90 LTVLENVMVAAQARTGS-G------LLLA---R---AR-----------REEREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCHHHHHHHHHhhcccc-c------cccc---c---cc-----------ccHHHHHHHHHHHHHHcCccchhhCC-----
Confidence 99999999875432100 0 0000 0 00 00011223467789999998766644
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+++|+|++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 457999999999999999999999999999999999999999999998754 3 55677788999999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=339.17 Aligned_cols=224 Identities=26% Similarity=0.376 Sum_probs=182.7
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-------CccceEEEecCCC-CC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-NH 237 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1433)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1235799999985 24
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-cccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTVV 316 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1433)
+...||.||+.|+.+..+.. ..+...+++++++.+||.+ ..+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~--- 139 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------------------------------KEKAEKIAAEKLEMVGLADEFWE--- 139 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhcc---
Confidence 45579999999976543211 0112234677889999963 444
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|++++|+..++.++||+|+
T Consensus 140 --~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 --KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred --CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 34567999999999999999999999999999999999999999999988753 3 5677888999999999999999
Q ss_pred EEcCCeEEEecCHHHHH---HHHHhcCCCCCCCCChHHHH
Q 000540 397 LLSNGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 433 (1433)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999875 34566777777655544444
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=332.93 Aligned_cols=214 Identities=23% Similarity=0.298 Sum_probs=178.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35778887663 24699999999999999999999999999999999998653 4799999998653
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000540 927 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990 (1433)
Q Consensus 927 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 990 (1433)
. ...++.++|++|++.+++..|+.||+.+..... ........++.+.++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123344455688999999998777665
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v 1069 (1433)
+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 579999999999999999999999999999999999999999999998764 899999999986 577889999
Q ss_pred EEEecCcEEEEECCC
Q 000540 1070 FLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1070 ~~L~~Gg~~~y~G~~ 1084 (1433)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99987 688888875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=325.95 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=176.0
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|++..++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4667766542 3469999999999999999999999999999999999765 347999999987543
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000540 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRL 1007 (1433)
Q Consensus 928 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1007 (1433)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..++.+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2568999999988888999999987654331 11 234678999999988777653 46999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1008 ~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999777999999999986 57788999999986 6888988864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=330.81 Aligned_cols=210 Identities=28% Similarity=0.384 Sum_probs=173.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999987 9999999998754332 3579999999888888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.++....+...+. + ..+....++.+++.+||++..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERP-------------------P-----------EAEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhccccccC-------------------C-----------HHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99999875432110000 0 0011224567889999987666544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+.++++++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999987643 245677788888889999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=330.70 Aligned_cols=219 Identities=22% Similarity=0.246 Sum_probs=175.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35677777653 34699999999999999999999999999999999997411135799999998754
Q ss_pred cc---cc-cceEEEeecCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 QE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~~---~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
.. .. +..++|++|++.+++.+|++|++.+........ .....+..+.+.++++.++|. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 11 234899999999999999999998764322110 012233345678899999997 45555432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~Gg 1076 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999986 46666 799999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 88888875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=330.92 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=176.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
-++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 377888887753 24699999999999999999999999999999999998653 479999999875
Q ss_pred ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000540 926 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 926 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 1000 (1433)
... ..++.++|++|+..+++.+||.||+.+..... .....++.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 13456999999999899899999998754221 1122234566777777 466555543 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 57889999999997 68889
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=330.99 Aligned_cols=216 Identities=23% Similarity=0.266 Sum_probs=177.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSGY 923 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1433)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887653 246999999999999999999999999999999999976421 35899999998
Q ss_pred cCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCC
Q 000540 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGLPGV 996 (1433)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~ 996 (1433)
++.. ..+++.+||++|++.+++.+||.||+.+....+.. .....+.++.++++++.++|.+ ..++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7542 23456799999999888899999999886543211 1122334556889999999864 23333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ .+.+.||++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999864 899999999986 57788999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 88888875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=330.31 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=178.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 67788887653 24699999999999999999999999999999999998653 4799999998642
Q ss_pred ---------cccccceEEEeecCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 927 ---------QETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 927 ---------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
....++.++|++|++.+++.+||.||+.+. .... .....+..+.+.++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 012345789999999999999999999753 2221 1223334456788999999987777654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999999777999999999986 56778999999986 7
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 88888875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=338.19 Aligned_cols=219 Identities=23% Similarity=0.286 Sum_probs=178.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+.... ...+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367888887763110 0014599999999999999999999999999999999998663 489999999875
Q ss_pred cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000540 926 KQ-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGV 996 (1433)
Q Consensus 926 ~~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1433)
.. ...++.+||++|++. .+..+||.||+.|....+ ....++.++.++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457999999963 333589999998765432 223444556788999999997 5666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 469999999999999999999999999999999999999999999999777999999999986 57789999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 88888875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=328.73 Aligned_cols=205 Identities=22% Similarity=0.358 Sum_probs=172.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 35999999999999999999999999999999999999988 9999999998754332 2469999999888999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 999999988643221100 011224567889999987666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . ++++++++|+..++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 3 56677788998999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=336.42 Aligned_cols=213 Identities=23% Similarity=0.305 Sum_probs=178.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ +++.+|+|||++|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 56778877652 123599999999999999999999999999999999998653 4799999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 927 Q----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
. ...++.+||++|++. .++..|+.||+.+..... ..+....++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 223467999999975 356789999998765332 1334444567889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++ +.||++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 66999999987 688899
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 885
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=331.62 Aligned_cols=215 Identities=21% Similarity=0.234 Sum_probs=175.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988763 235999999999999999999999999999999999976531 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK----PLKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 993 (1433)
.++.. ...++.++|++|++.+++ +||+||+.+...... .......++.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 124567999999988774 899999988654321 112333455678889998874 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999987 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=332.60 Aligned_cols=217 Identities=23% Similarity=0.263 Sum_probs=178.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 477888887652 34699999999999999999999999999999999998653 479999999875
Q ss_pred ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000540 926 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EIDSETRKMFIGEVMELVELKPLKQS 989 (1433)
Q Consensus 926 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 989 (1433)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+.+.++.+++.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999986431110 0 00111233457788999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCE
Q 000540 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1068 (1433)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~ 1068 (1433)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 54 469999999999999999999999999999999999999999999999765 899999999986 57788999
Q ss_pred EEEEecCcEEEEECCC
Q 000540 1069 LFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1069 v~~L~~Gg~~~y~G~~ 1084 (1433)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 688888875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=323.98 Aligned_cols=199 Identities=30% Similarity=0.423 Sum_probs=168.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++..||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5899999999999999999999999999999999999987 9999999998754332 35799999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.++.+..+... .+....++.+++.+||++..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988654321100 011234567889999987766544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv 404 (1433)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.... +.++++++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876433 456777888889999999999999999999
Q ss_pred Eec
Q 000540 405 YQG 407 (1433)
Q Consensus 405 ~~G 407 (1433)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=347.87 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=176.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999999865432 2479999999999
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.|+.+..+... .+...+++++++.+||++..++.
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~-- 161 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSY-- 161 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcC--
Confidence 999999999999765432110 01123456789999998766644
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .++++++++|+..++.+++|+|++
T Consensus 162 ---~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 162 ---PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEE
Confidence 4579999999999999999999999999999999999999999999987543 356677789999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999998874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=329.42 Aligned_cols=203 Identities=24% Similarity=0.345 Sum_probs=169.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCCCceeEEEECCeeCCCCC-----ccceEEEecCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL-----DSSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHD 235 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 235 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5999999999999999999999999999999999999 776 999999999875432 235799999998
Q ss_pred CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000540 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTV 315 (1433)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1433)
.++ .+||+||+.++.+..+.... .+....++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987543211000 00123456788999998765543
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
+. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++..+ . +++++++|+..++.++||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 20 357999999999999999999999999999999999999999999998754 2 66777889999999999999
Q ss_pred EEEcCCeEEEecCHHH
Q 000540 396 ILLSNGQIVYQGPREL 411 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~ 411 (1433)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.13 Aligned_cols=217 Identities=24% Similarity=0.255 Sum_probs=177.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 377888887763 246999999999999999999999999999999999986532 2479999999
Q ss_pred ccCc--c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKK--Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~--~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.. ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 1 12456799999999999999999999886543211 1123334456788999998853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 7 688888875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=325.36 Aligned_cols=201 Identities=28% Similarity=0.392 Sum_probs=169.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999998763 246799999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.++....+... .+....++.+++.+||++..++.+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998754322100 001224567889999987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS--NGQ 402 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~--~G~ 402 (1433)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++... .++++++++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987543 34567778888889999999999999 799
Q ss_pred EEEecCHH
Q 000540 403 IVYQGPRE 410 (1433)
Q Consensus 403 iv~~G~~~ 410 (1433)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=323.67 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=163.1
Q ss_pred eeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc-cccceEEEeecCCCCCCCCCHHHHHHH
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 955 (1433)
Q Consensus 877 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 955 (1433)
|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998653 479999999876431 234579999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 000540 956 SAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1433)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~ 1035 (1433)
....+. .. ....++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456789999999988777664 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1036 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1036 ~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
.+++.|++++++ |+|||++||++. ++.+.||++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999986 57788999999997 5666543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=326.45 Aligned_cols=203 Identities=29% Similarity=0.412 Sum_probs=171.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999987 999999999875421 2356999999988888999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.+..+..+... .+....++++++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 9999988654332110 001123567888999987777554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .++++++|+...+.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998643 3 677778888889999999999999999
Q ss_pred EEEecCHHHH
Q 000540 403 IVYQGPRELV 412 (1433)
Q Consensus 403 iv~~G~~~~~ 412 (1433)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.00 Aligned_cols=214 Identities=23% Similarity=0.274 Sum_probs=176.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+.. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899987653 246999999999999999999999999999999999976421 2589999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ..+++.++|++|++.+++ +|++||+.+....+ ....+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 123567999999988887 89999999865432 1233334456788999998843 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||+++|++. ++.+.||++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 899999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=325.78 Aligned_cols=195 Identities=26% Similarity=0.383 Sum_probs=162.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 9999999998765331 3579999999888
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 889999999998754332100 001224567889999987666544
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .++++++++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEE
Confidence 469999999999999999999999999999999999999999999987542 3456777788888775 9999999
Q ss_pred EcCCeE
Q 000540 398 LSNGQI 403 (1433)
Q Consensus 398 L~~G~i 403 (1433)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=328.40 Aligned_cols=215 Identities=25% Similarity=0.300 Sum_probs=177.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56778876652 24699999999999999999999999999999999997653 4799999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP--P---EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..++.++++++.+++.+..++.+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1234699999999999999999999885432110 0 0112334456889999999988777654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||++. ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999875 799999999986 57788999999987 67
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=324.90 Aligned_cols=210 Identities=25% Similarity=0.312 Sum_probs=171.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 4677887766311 0124699999999999999999999999999999999998653 4799999998753
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000540 927 QE---T---FA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 927 ~~---~---~~-~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1433)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+++.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 12 568999999988889999999988654321 222333456788999999987777654 469
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 1000 SgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999997 454
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=339.97 Aligned_cols=205 Identities=26% Similarity=0.359 Sum_probs=177.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2357999999988899999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.|.++..+... .+...+++.+++.+||++..++.+ +
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKI-----G 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCch-----h
Confidence 9999998765433110 011234577899999998877655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++||+||+++|++|+|||||+|||+.++..+.+.|+++. . +++|++++|+..++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~-~~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--K-DKTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999863 2 4678888999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=332.00 Aligned_cols=213 Identities=25% Similarity=0.359 Sum_probs=177.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 56788877653 34699999999999999999999999999999999998653 4799999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 123456899999988888899999998754221 1112233456788999999988777764 4699999
Q ss_pred HHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 1004 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 1004 rqRl~iA~aL~------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57778999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=375.27 Aligned_cols=207 Identities=24% Similarity=0.379 Sum_probs=167.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++++||+.+||+||||||||||+++|+|++ |. +|+|.+||+++++... ++.++||+|++. +++.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-LF~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQ-LPHG 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCc-CCCc
Confidence 35899999999999999999999999999999999999 77 8999999999987654 468999999765 5567
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++|||.++.. ....+.+.++++... .++. .-.|++..||.||+++.
T Consensus 438 TI~eNI~~g~~----~~~~eei~~al~~a~---------------------------l~~~--i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 438 TLRDNVLLGNP----DASDEQLQQALENAW---------------------------VSEF--LPLLPQGLDTPIGDQAA 484 (588)
T ss_pred CHHHHhhcCCC----CCCHHHHHHHHHHhC---------------------------HHHH--HHhcccccccccccCCC
Confidence 99999999732 111222222222110 1112 22467788999998765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
.||||||||++|||||+++|+||+||||||+||+.++..|.+.|++.. .++| ++.++|.. ++.+.||+|++|++|
T Consensus 485 -~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~T-vIiItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 485 -GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQT-TLMVTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCE-EEEEecCh-HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998753 3344 45555554 566789999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
++++.|+++++++
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=335.08 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=176.0
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4899999999999999999999999999999999999988 9999999998865332 357999999852 55678
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.|+.+..+.. ..+.+.+++.+++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 9999999865422110 0011234677899999987766544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+.||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 567788899999999999999999999
Q ss_pred eEEEecCHHHHH--HHHHhcCCCCC
Q 000540 402 QIVYQGPRELVL--EFFESMGFKCP 424 (1433)
Q Consensus 402 ~iv~~G~~~~~~--~~f~~~G~~~p 424 (1433)
++++.|+++++. +.+...|+.+|
T Consensus 215 ~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 215 RVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred EEEEECCHHHhcCHHHHHHcCCCCC
Confidence 999999987542 23334444443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.78 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=179.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ +...+|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67788887763 123589999999999999999999999999999999998653 4899999998754
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
. ...++.+||++|++. .+...||.||+.+..... ..+.+..++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334689999998765322 2334444566889999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999987 57789999999987 688899
Q ss_pred CCC
Q 000540 1082 GPL 1084 (1433)
Q Consensus 1082 G~~ 1084 (1433)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=326.50 Aligned_cols=195 Identities=24% Similarity=0.374 Sum_probs=164.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999875432 235799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++.+..+... .+....++++++.+||++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999998754322100 011234567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.++++++|+.+++.++||+|++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998753 3 566777889999999999999999
Q ss_pred cCCeE
Q 000540 399 SNGQI 403 (1433)
Q Consensus 399 ~~G~i 403 (1433)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99975
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=325.07 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=167.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999987 9999999998865432 2469999999888
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.++....+... .+.+.+++.+++.+||++..++.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~-- 142 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHR-- 142 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC--
Confidence 888999999998654321100 01123456789999998766654
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+..++.. +|++++
T Consensus 143 ---~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 143 ---PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 4569999999999999999999999999999999999999999999987543 35667778888888765 589999
Q ss_pred EcCCeEEEecCH
Q 000540 398 LSNGQIVYQGPR 409 (1433)
Q Consensus 398 L~~G~iv~~G~~ 409 (1433)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=347.01 Aligned_cols=203 Identities=24% Similarity=0.285 Sum_probs=174.4
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc---c----ccceEEEeecCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE---T----FARISGYCEQNDI 942 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 942 (1433)
+...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+||++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 344689999999999999999999999999999999998763 479999999876421 1 1346999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000540 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1433)
Q Consensus 943 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlL 1022 (1433)
+++.+||+||+.|....+. ...++.++.+.++++.++|.+..++.+ ..||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 233445567889999999998877764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999875 4899999999986 57788999999996 688888875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=344.21 Aligned_cols=208 Identities=24% Similarity=0.293 Sum_probs=176.8
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCe----eCCCCCc-------cceEEEe
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH----NMDEFVP-------ERTAAYI 231 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 231 (1433)
....+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3333211 2469999
Q ss_pred cCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000540 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1433)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1433)
+|+..+++.+||+||+.|+.+..+... .+.+..++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 1112346778999999877
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 000540 312 ADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL 391 (1433)
Q Consensus 312 ~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1433)
.|..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.. ..+.++++++|+..++.++
T Consensus 158 ~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 77544 46999999999999999999999999999999999999999999998754 3356777789999999999
Q ss_pred cCeEEEEcCCeEEEecCHHHHH
Q 000540 392 FDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 392 ~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.49 Aligned_cols=198 Identities=30% Similarity=0.446 Sum_probs=167.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCCH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1433)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999987 999999999875421 23579999999888888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.+..+..+.. ..+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------------------------------GDELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 99998754332110 0011234577899999987766544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998743 3 56777788898999999999999999999
Q ss_pred EEec
Q 000540 404 VYQG 407 (1433)
Q Consensus 404 v~~G 407 (1433)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=339.84 Aligned_cols=219 Identities=21% Similarity=0.391 Sum_probs=176.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-------------------Ccc
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------------------VPE 225 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 225 (1433)
+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999998 99999999887532 113
Q ss_pred ceEEEecCCC-CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHH
Q 000540 226 RTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1433)
Q Consensus 226 ~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1433)
+.++||+|++ ..+...||+||+.|+....+.. ..+...+++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 6799999985 2344569999999875322110 0111234567889
Q ss_pred HcCCc-ccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000540 305 VLGLD-VCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383 (1433)
Q Consensus 305 ~lgL~-~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q 383 (1433)
.+||+ +..+ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|++++|
T Consensus 162 ~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 3444 34557999999999999999999999999999999999999999999998753 3 567778899
Q ss_pred ChhHHHhhcCeEEEEcCCeEEEecCHHHHH---HHHHhcCCCCCCCC
Q 000540 384 PAPETYNLFDDIILLSNGQIVYQGPRELVL---EFFESMGFKCPKRK 427 (1433)
Q Consensus 384 ~~~~~~~~~D~iivL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~ 427 (1433)
+..++.++||+|++|++|++++.|+++++. +.++..|+.+|...
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 281 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVI 281 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHH
Confidence 999999999999999999999999999875 23455566655433
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=338.86 Aligned_cols=217 Identities=24% Similarity=0.356 Sum_probs=176.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC----------------------
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF---------------------- 222 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---------------------- 222 (1433)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999998 89999998764210
Q ss_pred -----CccceEEEecCCC-CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHH
Q 000540 223 -----VPERTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (1433)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (1433)
..++.+|||+|++ ..++..||+||+.|+....+.. ..+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHH
Confidence 1135799999984 4556689999999976543211 01122
Q ss_pred HHHHHHHHHcCCc-ccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 000540 297 VITDYYLKVLGLD-VCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCG 375 (1433)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~ 375 (1433)
.+++.+++.+||+ +..+. .+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3467789999996 45553 4557999999999999999999999999999999999999999999998753 3 5
Q ss_pred eEEEEEecChhHHHhhcCeEEEEcCCeEEEecCHHHHHH---HHHhcCCCCCC
Q 000540 376 TAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE---FFESMGFKCPK 425 (1433)
Q Consensus 376 t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1433)
.+|++++|+.+++.+.||+|++|++|++++.|+++++.. .+...|...|.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 268 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPK 268 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCh
Confidence 678889999999999999999999999999999998752 33344544443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=334.36 Aligned_cols=215 Identities=25% Similarity=0.290 Sum_probs=180.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3788899877631 123599999999999999999999999999999999998663 479999999876
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.+||++|++. .++..||.||+.+..... ....++.++.+.++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 223567999999973 566789999998865432 1234444567899999999998877764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||+|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..||++++|++ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 34 46999999986 68889
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=324.96 Aligned_cols=203 Identities=23% Similarity=0.372 Sum_probs=168.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 35899999999999999999999999999999999999987 9999999998765432 3569999999888999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTVVGDE 319 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vG~~ 319 (1433)
+||+||+.++....+ .. +....++.+++.+ ++++..++.
T Consensus 90 ~t~~~~l~~~~~~~~--~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~---- 129 (222)
T cd03224 90 LTVEENLLLGAYARR--RA----------------------------------KRKARLERVYELFPRLKERRKQL---- 129 (222)
T ss_pred CcHHHHHHHHhhhcC--ch----------------------------------hHHHHHHHHHHHHHhhhhhhhCc----
Confidence 999999988653221 00 0011234456666 466555543
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.. .++++++++|+..++.+++|+|++|+
T Consensus 130 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 130 -AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 456999999999999999999999999999999999999999999998754 35677778899999999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999988753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=330.94 Aligned_cols=207 Identities=20% Similarity=0.332 Sum_probs=173.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999987 9999999998764321 35699999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||.||+.++...... .. ..+....++.+++.+||++..++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~-- 141 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ-LP--------------------------------APLLHSTVMMKLEAVGLRGAAKLMP-- 141 (269)
T ss_pred CCCCHHHHHHHHHHHccC-CC--------------------------------HHHHHHHHHHHHHHcCChhhhhCCh--
Confidence 889999999886432100 00 0011223566789999988777544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .++++++++|+..++.+++|+|++|
T Consensus 142 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 142 ---SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 469999999999999999999999999999999999999999999987543 3567777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=331.43 Aligned_cols=217 Identities=25% Similarity=0.330 Sum_probs=178.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 56788877652 34699999999999999999999999999999999997653 4799999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
. ...++.++|++|+..+++.+|+.||+.++...... ........++.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999998888889999999875211000 01111233456788999999987777653 569999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999987 57889999999986 6788888
Q ss_pred CCC
Q 000540 1083 PLG 1085 (1433)
Q Consensus 1083 ~~~ 1085 (1433)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=338.75 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=176.8
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCC--
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD-- 235 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1433)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742238999999999865432 14799999986
Q ss_pred CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000540 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTV 315 (1433)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1433)
.+.+.+||.+++.+....... . ...+...++.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~-~--------------------------------~~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG-M--------------------------------SKAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC-C--------------------------------CHHHHHHHHHHHHHHcCCCChHHH-
Confidence 678899999999875432210 0 001122346677899999764332
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
. ++.+.+|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+. .++++++++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567889999999999999999999999999999999999999999999987653 3677888999999999999999
Q ss_pred EEEcCCeEEEecCHHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~~ 414 (1433)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=327.81 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=174.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCC---CCceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 922 (1433)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. +..+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887653 246999999999999999999999999999999999952 2112479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 123557999999988876 6999999876543311 12233445678899999986422111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4899999999987 57788999999986 68
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 8999875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.43 Aligned_cols=213 Identities=23% Similarity=0.351 Sum_probs=176.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 56778877653 23599999999999999999999999999999999997653 4799999998753
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 Q-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~-----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
. ...++.++|++|++.. ....|+.||+.+....+ ....++.++.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234579999998753 34568999998764332 1233344456788999999988777653 5699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 56788999999987 68888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.33 Aligned_cols=220 Identities=23% Similarity=0.294 Sum_probs=175.6
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC---CceEEEEEEEc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVS 921 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~ 921 (1433)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... ..+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988763 2369999999999999999999999999999999999642 11247999999
Q ss_pred CccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
|.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987532 123567999999988887 5999999886543211 12233345678889999985421111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.||++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999854 799999999986 57788999999987 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 78888874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.78 Aligned_cols=218 Identities=22% Similarity=0.280 Sum_probs=180.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 588899988763 24699999999999999999999999999999999998653 479999999875
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.++|++|++.+++..|++|++.+......+ .....+..++.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 32 22345689999999888889999999864211100 00011233456789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.||++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 58889999999986 68889
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 88864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.87 Aligned_cols=206 Identities=28% Similarity=0.412 Sum_probs=172.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999987 9999999998764332 35799999998888899
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc--ccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTVVGDE 319 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vG~~ 319 (1433)
||+||+.++.+..+... .+....++++++.+||++ ..+ +
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~-----~ 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFAD-----R 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHh-----c
Confidence 99999988654322100 011234567889999975 444 3
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .++++++++|+..++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 45579999999999999999999999999999999999999999999987543 35667778888889999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=371.82 Aligned_cols=209 Identities=28% Similarity=0.433 Sum_probs=170.7
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1433)
++++|+|+|++++|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++++... ++.++||+|++.+| +
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF-~ 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-S 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceee-c
Confidence 346999999999999999999999999999999999999997 9999999999987655 47899999976555 5
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||+|||.++..- ...+.+.++++... .++.+ ..+++++||.||+++
T Consensus 417 ~TI~~NI~~g~~~----at~eei~~a~k~a~---------------------------~~d~I--~~lp~g~dt~vge~G 463 (567)
T COG1132 417 GTIRENIALGRPD----ATDEEIEEALKLAN---------------------------AHEFI--ANLPDGYDTIVGERG 463 (567)
T ss_pred ccHHHHHhcCCCC----CCHHHHHHHHHHhC---------------------------hHHHH--HhCcccccceecCCC
Confidence 8999999998531 11233333333221 11222 345788999999665
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
. .||||||||++||||++.+|++|+||||||+||+.+...|.+.+++.. +++|+++ +.|..+.+ ..+|+|++|++
T Consensus 464 ~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti-~~aD~IiVl~~ 538 (567)
T COG1132 464 V-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTI-KNADRIIVLDN 538 (567)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHH-HhCCEEEEEEC
Confidence 5 699999999999999999999999999999999999999999998654 3456665 66665444 55999999999
Q ss_pred CeEEEecCHHHHHH
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1433)
|++++.|++++++.
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999975
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.59 Aligned_cols=214 Identities=28% Similarity=0.373 Sum_probs=173.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 45999999999999999999999999999999999999887 999999999876543 135799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++..... . ..... .+. ...+....++.+++.+||.+..++.
T Consensus 91 ~~~tv~~~l~~~~~~~~--~---~~~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~--- 141 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--S---TWRSL------FGL---------------FPKEEKQRALAALERVGLLDKAYQR--- 141 (241)
T ss_pred ccCcHHHHHHhhhcccc--h---hhhhh------ccc---------------CcHHHHHHHHHHHHHcCChhhhCCC---
Confidence 88999999987642110 0 00000 000 0001123456788999998766543
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++... .+.++++++|+..++.+++|++++|
T Consensus 142 --~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 142 --ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4579999999999999999999999999999999999999999999987643 3456777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.15 Aligned_cols=217 Identities=18% Similarity=0.231 Sum_probs=178.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377888887763 246999999999999999999999999999999999976431 2489999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|+..+++.+||+||+.+....+. .......++.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999987654321 1123344556788999999842 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 689999999986 5778899999997
Q ss_pred c-----CcEEEEECCC
Q 000540 1074 R-----GGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~-----Gg~~~y~G~~ 1084 (1433)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 3 4789998875
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=322.65 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=167.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999887 9999999988753 2346799999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.+..+..+... .+....++++++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988654322100 011234567889999987766544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv 404 (1433)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++..+ . +.++++++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998754 3 467778899999999999999999999998
Q ss_pred Eec
Q 000540 405 YQG 407 (1433)
Q Consensus 405 ~~G 407 (1433)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=331.76 Aligned_cols=220 Identities=27% Similarity=0.350 Sum_probs=179.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYP 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1433)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 477888887653 346999999999999999999999999999999999976532 236999999987
Q ss_pred Ccc--------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000540 925 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-----EIDSETRKMFIGEVMELVELKPLKQSLV 991 (1433)
Q Consensus 925 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 991 (1433)
... ...++.++|++|++.+++.+||+||+.+......+. ....++.+..++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999899999999998753211000 1112234456889999999987777654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEE
Q 000540 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1070 (1433)
Q Consensus 992 g~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~ 1070 (1433)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999999754 899999999986 4778899999
Q ss_pred EEecCcEEEEECCCC
Q 000540 1071 LMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1071 ~L~~Gg~~~y~G~~~ 1085 (1433)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 6788888864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=337.07 Aligned_cols=220 Identities=18% Similarity=0.231 Sum_probs=179.6
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC-c-eEEEEEEEcCcc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNIKVSGYP 924 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~ 924 (1433)
++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|.... + ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776421 1225699999999999999999999999999999999997542 2 358999999987
Q ss_pred Cccc---c----ccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccccc
Q 000540 925 KKQE---T----FARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL---KQSLVG 992 (1433)
Q Consensus 925 ~~~~---~----~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg 992 (1433)
+... . .++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+. .++.
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6421 1 123699999998 47888999998876543321 23445556778999999999753 2333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEE
Q 000540 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1071 (1433)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~ 1071 (1433)
+.+|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|+|++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999976 4899999999987 46788999999
Q ss_pred EecCcEEEEECCC
Q 000540 1072 MKRGGYEIYVGPL 1084 (1433)
Q Consensus 1072 L~~Gg~~~y~G~~ 1084 (1433)
|++ |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 986 789999985
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=317.24 Aligned_cols=196 Identities=30% Similarity=0.572 Sum_probs=162.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYP 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1433)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999998642 13457999999999999999999999999999999999976522 458999999987
Q ss_pred Ccc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 925 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 925 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
... ...++.++|++|++.+++.+||+||+.+....+ .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753211 1222 3569999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
||||++||+||+.+|++|||||||+|||+.+++.+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777766543467889999999997 677765
Q ss_pred C
Q 000540 1082 G 1082 (1433)
Q Consensus 1082 G 1082 (1433)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.73 Aligned_cols=218 Identities=28% Similarity=0.358 Sum_probs=179.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 478899987663 24699999999999999999999999999999999998653 479999999875
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23345799999998888889999999875321110 00111223456789999999987777664 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999986 67888
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 88753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.32 Aligned_cols=218 Identities=20% Similarity=0.246 Sum_probs=177.9
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--C-ceEEEEEE
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIK 919 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~ 919 (1433)
++..++++|+++.++ ...+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999988763 2369999999999999999999999999999999999753 1 13579999
Q ss_pred EcCccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000540 920 VSGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSL 990 (1433)
Q Consensus 920 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 990 (1433)
++|.+... ...++.++|++|++.+++ .|++||+.+...... ..+.+..++.++++++.+++.+ ..++.
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987531 134567999999988777 899999987653321 1233344456889999999843 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1070 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~ 1070 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 35799999999999999999999999999999999999999999999986 4789999999986 5678899999
Q ss_pred EEecCcEEEEECCC
Q 000540 1071 LMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1071 ~L~~Gg~~~y~G~~ 1084 (1433)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9986 688888875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.47 Aligned_cols=190 Identities=58% Similarity=0.929 Sum_probs=160.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+..|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47788998877421 012469999999999999999999999999999999999643223589999999876
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 33456799999999888999999999864211 0 39999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++.++.+.||++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877799999999998644678899999998757888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.09 Aligned_cols=214 Identities=28% Similarity=0.348 Sum_probs=177.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
+.++|+++.+. +.+.+|+|||++|++||+++|+||||||||||+++|+|.... ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56788887763 123599999999999999999999999999999999997653 4799999998763
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 334579999998754321 1234444566889999999988877764 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57778999999997 68888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=336.83 Aligned_cols=225 Identities=19% Similarity=0.273 Sum_probs=182.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNIKVSGYP 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1433)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899998776421 12356999999999999999999999999999999999976532 237999999987
Q ss_pred Cccc---c---cc-ceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000540 925 KKQE---T---FA-RISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPG 995 (1433)
Q Consensus 925 ~~~~---~---~~-~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1433)
+... . ++ +.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6421 1 12 4699999998 67889999999977654332 234455556788999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+.+||||||||++||+||+.+|++||+||||+|||+.++..|+++|+++.++ |.|+|++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 46678999999986
Q ss_pred CcEEEEECCCC
Q 000540 1075 GGYEIYVGPLG 1085 (1433)
Q Consensus 1075 Gg~~~y~G~~~ 1085 (1433)
|++++.|+..
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 7899999863
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=329.91 Aligned_cols=223 Identities=23% Similarity=0.299 Sum_probs=178.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++.....+ ..+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67888887764210000 01235799999999999999999999999999999999998653 4799999998754
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
.. ..++.++|++|++ .+.+.+||+|++.+...... .......++.+.++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999996 45678999999976543211 122333455688999999996 555654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56778999999986 7
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 88898885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=342.12 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=175.7
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc----Ccc---cc---c-cceEEEee
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP----KKQ---ET---F-ARISGYCE 938 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv~ 938 (1433)
+...+|+|+||+|++||+++|+|+||||||||+++|+|...+ ..|+|.++|.+ ... .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 456799999999999999999999999999999999998763 47999999962 211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000540 939 QNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018 (1433)
Q Consensus 939 Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~ 1018 (1433)
|+..++|.+||+||+.|+...+ .....++++.+.++++.+||.+..++.+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2344556677899999999998887764 4699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1019 iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+++|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999764 899999999987 57889999999987 6888988863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.93 Aligned_cols=211 Identities=26% Similarity=0.310 Sum_probs=172.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 35677776653 34699999999999999999999999999999999998653 4799999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000540 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE-LKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. .++..+++++.++ +.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124568999999999999999999987654321 11 1233567777776 45555554 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999986 68888
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=345.72 Aligned_cols=209 Identities=24% Similarity=0.413 Sum_probs=176.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+.+|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45999999999999999999999999999999999999998 9999999998865432 36799999998888999
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.++..... + +. .. ...+...+++++++.+||.+..++. +
T Consensus 93 tv~e~v~~~~~~~~-~-~~----------------~~------------~~~~~~~~v~~~le~vgl~~~~~~~-----~ 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR-S-RF----------------DT------------WTETDRAAVERAMERTGVAQFADRP-----V 137 (402)
T ss_pred CHHHHHHhccchhc-c-cc----------------cC------------CCHHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 99999998642110 0 00 00 0011234578889999998877754 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.|||||||||.|||||+++|++|+|||||+|||+.++..+.+.|+++.+ . ++++++++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999864 3 457777899999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999999864
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=296.59 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=177.0
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHH
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 951 (1433)
..+|+|+|++|.+||.++++||||||||||||+++|..++ ..|.|.+||.+++...- .-|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 3589999999999999999999999999999999998774 47999999998754322 2399999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 000540 952 SLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031 (1433)
Q Consensus 952 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~ 1031 (1433)
|+.|+..++. +++.++.+.+.+.+..+||.+..++.+ -+||||||||+.|||||..+|+.|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999988874 678889999999999999999888774 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecC-cEEEEECCCC
Q 000540 1032 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGPLG 1085 (1433)
Q Consensus 1032 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-g~~~y~G~~~ 1085 (1433)
-+++.++++|-++.+ +|+.++++||+.. +..-+++++++|+.| |+++..=|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999988864 5999999999987 444567999999853 6777766663
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.05 Aligned_cols=217 Identities=28% Similarity=0.383 Sum_probs=177.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56778876653 34699999999999999999999999999999999997653 4799999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
. ...++.++|++|++..++.+||+||+.+....... ......+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 22345689999998777889999999875211000 00111223456788999999987777664 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ .+.+.||++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57789999999987 6788888
Q ss_pred CCC
Q 000540 1083 PLG 1085 (1433)
Q Consensus 1083 ~~~ 1085 (1433)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=325.30 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=177.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1433)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478888887763 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.++.. ..+++.++|++|+..+++.+|++||+.+...... .....+.++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2345679999999999999999999987543321 112233345678889999986421111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57789999999986 78
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=322.82 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=179.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
+.++|+++.+. .+.+++|+|++++||++++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35677777653 24699999999999999999999999999999999998653 4799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.. ..++.++|++|++..++.+|+.||+.+....+. ......++.++++++.+++.+..++.+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 32 124578999999998888999999987654331 223334556788999999988777664 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999986 688888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=346.57 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=179.8
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcC
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1433)
++..+..+|++|.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4566777899988752 33799999999999999999999999999999999998774 489999999
Q ss_pred ccCc---cccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc------cccC
Q 000540 923 YPKK---QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS------LVGL 993 (1433)
Q Consensus 923 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~vg~ 993 (1433)
.+.. ...++++++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..+|.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8864 4568899999999998775 69999998742 1222 3447788888888776554 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999986 599999999975 567789999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 788988875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=338.31 Aligned_cols=208 Identities=21% Similarity=0.248 Sum_probs=175.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--C
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1433)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 9999999999865432 35799999986 5
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1433)
+++.+||.||+.+..+....+. ...+....++++++.+||. +..+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~--------------------------------~~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKL--------------------------------SRQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCC--------------------------------CHHHHHHHHHHHHHHcCCChHHhc--
Confidence 7889999999998654321000 0011223466789999994 3344
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
..+..|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+ ..+.++++++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 45567999999999999999999999999999999999999999999998754 33567888999999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|.+|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=332.67 Aligned_cols=217 Identities=24% Similarity=0.323 Sum_probs=175.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67888888764210 0113599999999999999999999999999999999998653 4799999998753
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000540 927 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGV 996 (1433)
Q Consensus 927 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1433)
. ...++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.++|.+ ..++. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 12356789999986 3444 69999998764332 1233344556788999999973 45554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777899999999986 57788999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=336.02 Aligned_cols=226 Identities=23% Similarity=0.248 Sum_probs=183.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|.... .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478899987774311000 001235799999999999999999999999999999999998653 479999999876
Q ss_pred ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000540 926 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGV 996 (1433)
Q Consensus 926 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1433)
... .+++.++||+|++ .+.|.+|+.+++........ .....+.++.+.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 421 2456799999997 57889999999976544321 2344556677899999999963 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
..||||||||++|||||+.+|++|++||||++||..++..|+++|+++.++ |.|||++||+++ .+.+.+|++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46678999999996
Q ss_pred cEEEEECCCC
Q 000540 1076 GYEIYVGPLG 1085 (1433)
Q Consensus 1076 g~~~y~G~~~ 1085 (1433)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 7999999853
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.42 Aligned_cols=180 Identities=44% Similarity=0.763 Sum_probs=155.1
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCceeEEEECCeeCCCCC--ccceEEEecCCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNH 237 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1433)
..+.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34579999999999999999999999999999999999998 55 999999999876532 24679999999889
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.++.+.. .
T Consensus 95 ~~~~tv~~~l~~~~~~~--------------------------------------------------------------~ 112 (202)
T cd03233 95 FPTLTVRETLDFALRCK--------------------------------------------------------------G 112 (202)
T ss_pred CCCCcHHHHHhhhhhhc--------------------------------------------------------------c
Confidence 99999999998753210 1
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++....+.++++++||+.+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 12344699999999999999999999999999999999999999999999876543556677777878899999999999
Q ss_pred EcCCeEEEec
Q 000540 398 LSNGQIVYQG 407 (1433)
Q Consensus 398 L~~G~iv~~G 407 (1433)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=321.90 Aligned_cols=213 Identities=25% Similarity=0.346 Sum_probs=174.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 47889998776321 0113599999999999999999999999999999999998653 479999999875
Q ss_pred cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000540 926 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~~~------~-~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1433)
.... . ++.++|++|++.+++.+|+.||+.+....+. ......++.+.++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4211 1 2469999999988899999999987654321 223344567889999999987777654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999987 56
Q ss_pred EEE
Q 000540 1078 EIY 1080 (1433)
Q Consensus 1078 ~~y 1080 (1433)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=320.69 Aligned_cols=232 Identities=25% Similarity=0.319 Sum_probs=189.4
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-CCCceeEEEECCeeCCCCCc-------cceEEEecCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD-S-SLKVSGRVTYNGHNMDEFVP-------ERTAAYISQH 234 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1433)
..++++||||++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33567899999998755432 2579999998
Q ss_pred C--CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 000540 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1433)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1433)
+ .+-|.+||.+.+.-..+...... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 57788899888876544321000 1122345677889999998643
Q ss_pred cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 000540 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392 (1433)
Q Consensus 313 dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1433)
. +-+.++.+|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.+ ..+++++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 34578889999999999999999999999999999999999999999999999876 56788999999999999999
Q ss_pred CeEEEEcCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhcC
Q 000540 393 DDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438 (1433)
Q Consensus 393 D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ev~s 438 (1433)
|+|+||..|+||+.|+.+++. ..|.+.-....+..+..
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCcc
Confidence 999999999999999999874 45665555555554443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=327.36 Aligned_cols=222 Identities=22% Similarity=0.240 Sum_probs=179.0
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEE
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIK 919 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~ 919 (1433)
.+..+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999988763 24699999999999999999999999999999999997542 13589999
Q ss_pred EcCccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000540 920 VSGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994 (1433)
Q Consensus 920 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1433)
++|.+... ...++.++|++|++.+++ .||+||+.+..... ........++.+.++++.++|.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 123557999999988877 69999998864322 1122334456678899999985422111121
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 246799999999999999999999999999999999999999999999985 4799999999987 57789999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 788898885
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=340.25 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=177.1
Q ss_pred CCceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcC
Q 000540 843 EPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922 (1433)
Q Consensus 843 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1433)
.+..|+|+||++++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 445699999999875 34569999999999999999999999999999999999765 379999999
Q ss_pred ccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 000540 923 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-------LKQSLVG 992 (1433)
Q Consensus 923 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg 992 (1433)
.+++. +++|+.+||||||..++ +-||.+|+.|+. .+.+.+ +|-++.+..++.+ -.++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 56788999999988776 469999999863 333433 3455566666544 3455577
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
+.| ..|||||||||+||||++.+|+|+++|||||.||.++...+++.+++. ..|+|+|++.|+.+ ....||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 654 569999999999999999999999999999999999999999999984 45899999999964 67889999999
Q ss_pred ecCcEEEEECCC
Q 000540 1073 KRGGYEIYVGPL 1084 (1433)
Q Consensus 1073 ~~Gg~~~y~G~~ 1084 (1433)
++ |++...|+-
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 98 577888875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.67 Aligned_cols=206 Identities=26% Similarity=0.381 Sum_probs=171.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35999999999999999999999999999999999999988 9999999998754322 257999999988878999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.+.....+... .+....++++++.+||++..++.+ .
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKV-----R 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 9999987653321100 011123567788999987776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++++.. +.++++++|+..++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHh-hCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999876433 456777888888876 499999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+++++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.43 Aligned_cols=213 Identities=26% Similarity=0.345 Sum_probs=172.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999987 999999999875432 135699999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++..... .... ... +. ...+....++++++.+||.+..+..
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~--- 142 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SLL------GR---------------FSEEDKERALSALERVGLADKAYQR--- 142 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCC---
Confidence 89999999987532100 0000 000 00 0001123467788999998766643
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .++++++++|+..++.++||++++|
T Consensus 143 --~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 143 --ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4579999999999999999999999999999999999999999999987543 3567777889999999999999999
Q ss_pred cCCeEEEecCHHHH
Q 000540 399 SNGQIVYQGPRELV 412 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1433)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=325.45 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=174.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNIKVSGYPK 925 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 925 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.... .+..|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778887763 24699999999999999999999999999999999997531 23579999999876
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCCCC
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL----KQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~~~ 998 (1433)
.. ..+++.++|++|++.+++ .|++||+.+....+... ......++.++++++.+++.+. .+.. +..
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567999999988887 69999998865433110 1122334557889999999532 2332 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999986 57788999999996 688
Q ss_pred EEECCC
Q 000540 1079 IYVGPL 1084 (1433)
Q Consensus 1079 ~y~G~~ 1084 (1433)
++.|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 888875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=318.83 Aligned_cols=198 Identities=24% Similarity=0.299 Sum_probs=166.4
Q ss_pred EeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc-ccccceEEEeecCCCCCCCCCHHHH
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-ETFARISGYCEQNDIHSPFVTVYES 952 (1433)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 952 (1433)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 45799999999999999999999999999999998663 47999999987642 2345679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 000540 953 LLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1433)
Q Consensus 953 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~ 1032 (1433)
+.+...... ... ...+..++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 111 223446788999999988777664 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECC
Q 000540 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1033 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~ 1083 (1433)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 56778999999986 68777764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=327.95 Aligned_cols=216 Identities=23% Similarity=0.255 Sum_probs=176.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999998763 24699999999999999999999999999999999997542 12579999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL----KQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 993 (1433)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. .....+.++.++++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 1245678999999888774 999999886543311 11223334567889999999642 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.||++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.11 Aligned_cols=198 Identities=24% Similarity=0.367 Sum_probs=166.3
Q ss_pred eeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHH
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954 (1433)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 954 (1433)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998653 4799999998764321 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000540 955 YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1433)
Q Consensus 955 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~ 1034 (1433)
+......+ .....+.++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2233444556789999999987777654 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1035 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1035 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999997 677777754
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=335.70 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=174.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEECCeeCCCCCc-------cceEEEecCCC-
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1433)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 138999999999865432 13699999986
Q ss_pred -CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
.+.+.+||.+++....+..... ...+...+++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------------------------------~~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------------------------------NKKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------------------------------CHHHHHHHHHHHHHHCCCCChHH-
Confidence 4788899999987654321000 01112345678899999975221
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
+-+..+..|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++... .+.++++++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112456689999999999999999999999999999999999999999999987653 356788899999999999999
Q ss_pred EEEEcCCeEEEecCHHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~~ 414 (1433)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999998753
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.82 Aligned_cols=192 Identities=28% Similarity=0.366 Sum_probs=161.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCC-CCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN-HIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 35999999999999999999999999999999999999988 9999999998754333467999999863 3557899
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.++....+. ....++++++.+||++..++.+ ..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHP-----LS 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hh
Confidence 9999875422100 0123567789999987776544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++..+ . +.++++++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 56677788998999999999999999997
Q ss_pred E
Q 000540 404 V 404 (1433)
Q Consensus 404 v 404 (1433)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=322.54 Aligned_cols=212 Identities=26% Similarity=0.378 Sum_probs=178.4
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677776653 24699999999999999999999999999999999998653 47999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000540 928 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006 (1433)
Q Consensus 928 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1433)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+ ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234579999999998889999999987654321 223333456788999999987777654 4699999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1007 l~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999986 57788999999986 688888885
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.78 Aligned_cols=195 Identities=26% Similarity=0.386 Sum_probs=165.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-CccceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-VPERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (1433)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35999999999999999999999999999999999999987 99999999876532 123579999999888889999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.+.....+. .+..++.+++.+||++..++.+ +.
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 9999886532110 0123466788899987666544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++... . +.++++++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45677788999999999999999999999
Q ss_pred EEec
Q 000540 404 VYQG 407 (1433)
Q Consensus 404 v~~G 407 (1433)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=329.98 Aligned_cols=215 Identities=23% Similarity=0.308 Sum_probs=178.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4788999877631 134689999999999999999999999999999999998653 479999999886
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++.+..+.++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998764322 1233444556889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..||++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 34 57999999986 67888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=359.70 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=183.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++++. ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378888887763 3469999999999999999999999999999999999765423589999999876
Q ss_pred cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.... .++.+||++|++.+++.+||+||+.+....+.....+.+..++.++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 23569999999988899999999988653321111223334456889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++. .+.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999996 688898
Q ss_pred CCCCc
Q 000540 1082 GPLGR 1086 (1433)
Q Consensus 1082 G~~~~ 1086 (1433)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=333.07 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=171.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCC-C
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHD-N 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 236 (1433)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 999999999875421 245799999985 2
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1433)
.+...||.||+.|+....+.. ..+...+++++++.+||. +..++
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 141 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMSQ- 141 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC-
Confidence 344469999999875322110 011223467789999996 45554
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|++++|+.+++.+.+|+|
T Consensus 142 ----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 142 ----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred ----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCEE
Confidence 4557999999999999999999999999999999999999999999998754 34577788899999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=324.20 Aligned_cols=205 Identities=20% Similarity=0.337 Sum_probs=172.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNHIG 239 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999999987 999999999876421 1357999999988888
Q ss_pred CCCHHHHHHHhhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
.+||+||+.++... .+.. ..+....++++++.+||++..+..
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~--- 133 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------------------------------KEEAEKQARELLAKVGLAERAHHY--- 133 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChHHHhcC---
Confidence 89999999886421 1100 001123456788999998766644
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
++.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.. . ++++++++|+..++.+++|++++|
T Consensus 134 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 134 --PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred --hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999998753 3 566777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=335.59 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=177.8
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--ceEEEEEEEcCcc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKVSGYP 924 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~ 924 (1433)
+.++|++..++.. .+...+|+|||++|++||+++|+|+||||||||+++|+|.... ....|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888776421 1235799999999999999999999999999999999997642 2457999999987
Q ss_pred Cccc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCcccc---cc
Q 000540 925 KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPE---IDSETRKMFIGEVMELVELKPLK---QS 989 (1433)
Q Consensus 925 ~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~---~~ 989 (1433)
+... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+.. ++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 5321 1 1246999999975 5688999999976422111000 11223455688999999997532 33
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCE
Q 000540 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1068 (1433)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~ 1068 (1433)
. +..|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++|||++ .+.+++|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 3579999999999999999999999999999999999999999999999864 999999999986 57788999
Q ss_pred EEEEecCcEEEEECCC
Q 000540 1069 LFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1069 v~~L~~Gg~~~y~G~~ 1084 (1433)
+++|++ |++++.|+.
T Consensus 229 i~vm~~-G~ive~g~~ 243 (330)
T PRK15093 229 INVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEC-CEEEEECCH
Confidence 999986 789999985
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=318.55 Aligned_cols=224 Identities=22% Similarity=0.311 Sum_probs=181.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC---CceEEEEEEEcCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNIKVSGY 923 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 923 (1433)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|... +....|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4567777665432 124679999999999999999999999999999999999764 2356789999998
Q ss_pred cCc---cc---c-ccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000540 924 PKK---QE---T-FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994 (1433)
Q Consensus 924 ~~~---~~---~-~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1433)
++- .+ . +-+.+++++|++. +.|.+||.+.+.=......... .+++.++++.++|+.+++.+-....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 642 21 1 2347999999974 6788999888765544322111 3455667788999999998753332222
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.|+|++|||+. -+.++||||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 5999999999997 4889999999999
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
. |++++.|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.80 Aligned_cols=209 Identities=25% Similarity=0.345 Sum_probs=173.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ ..|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 367888887753 24699999999999999999999999999999999997653 479999999875
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.++|++|++.+++ .|++||+.+....+ . . .+..+.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 233567999999988776 69999998653221 1 1 123577889999996 455554 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999997 67888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8775
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=328.97 Aligned_cols=219 Identities=26% Similarity=0.344 Sum_probs=176.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc------eEEEEEEE
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNIKV 920 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i 920 (1433)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56778876652 346999999999999999999999999999999999976532 12799999
Q ss_pred cCccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 921 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 921 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
+|.+... ..+++.++|++|++..++.+||+||+.+....... ......+.++.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987542 23345689999998766679999999875321110 01111233456788999999987766553
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhc
Q 000540 997 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1066 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~---------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~ 1066 (1433)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 569999999999999999 599999999999999999999999999998765 899999999986 577789
Q ss_pred CEEEEEecCcEEEEECCCC
Q 000540 1067 DELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1067 D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999986 6888888863
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=334.07 Aligned_cols=208 Identities=19% Similarity=0.241 Sum_probs=175.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--C
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1433)
+.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999887 9999999999865432 35799999986 5
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1433)
+.+.+||.+++.+..+.... . ...+...++.++++.+||+. ..+
T Consensus 105 l~p~~~v~~~l~~~~~~~~~-~--------------------------------~~~~~~~~~~~~l~~~gL~~~~~~-- 149 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS-L--------------------------------SAAERREKALAMMAKVGLRPEHYD-- 149 (327)
T ss_pred cCCccCHHHHHHHHHHHccC-C--------------------------------CHHHHHHHHHHHHHHCCCChHHhc--
Confidence 78889999999876533210 0 00112235678899999963 445
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
..++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .++++++++|+...+.+++|+|
T Consensus 150 ---~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 ---RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999987543 3567888999999999999999
Q ss_pred EEEcCCeEEEecCHHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~~ 414 (1433)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=326.29 Aligned_cols=204 Identities=24% Similarity=0.345 Sum_probs=171.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-----------CccceEEEecCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----------VPERTAAYISQH 234 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 234 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5899999999999999999999999999999999999887 99999999987532 113579999999
Q ss_pred CCCCCCCCHHHHHHHhhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000540 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1433)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1433)
+.+++.+||+||+.++... ++.. ..+....++.+++.+||++..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEP----------------------------------KEEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCcchhh
Confidence 8888889999999885421 1100 0011234567788999987666
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 000540 314 TVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393 (1433)
Q Consensus 314 t~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1433)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+++|
T Consensus 140 ~~-----~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SY-----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CC-----hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcC
Confidence 44 457999999999999999999999999999999999999999999998753 3 4567778899999999999
Q ss_pred eEEEEcCCeEEEecCHHHHH
Q 000540 394 DIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 394 ~iivL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=331.39 Aligned_cols=217 Identities=24% Similarity=0.289 Sum_probs=179.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCce-EEEEEEEcCcc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKVSGYP 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 924 (1433)
.++++|+++.++. ..+.+|+|||++|++||+++|+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788898887631 12359999999999999999999999999999999999765321 13899999988
Q ss_pred Cccc---cccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 925 KKQE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 925 ~~~~---~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.... ..++.+||++|++. .++..||+||+.|....+ ....++.++.+.++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 6432 23467899999974 567799999998764322 2344455567889999999988777664 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+ +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 34 57999999986 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 98875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=318.98 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=161.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.++........ .+....+.++++.+||++..+..
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 138 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHR-- 138 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC--
Confidence 888999999988653221100 01122356788899998766644
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..|||||||||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.+.. +.++++++|+..++. .+|+|++
T Consensus 139 ---~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 139 ---PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEE
Confidence 35799999999999999999999999999999999999999999999875433 456667778877764 5799999
Q ss_pred EcCCeEE
Q 000540 398 LSNGQIV 404 (1433)
Q Consensus 398 L~~G~iv 404 (1433)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=367.09 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=108.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000540 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1018 (1433)
Q Consensus 943 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~aL~---~~p~ 1018 (1433)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887553222122233344455 58889999876 56553 569999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEECCCC
Q 000540 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPLG 1085 (1433)
Q Consensus 1019 iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~Gg~~~y~G~~~ 1085 (1433)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +||+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999996 368999999763
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=329.88 Aligned_cols=216 Identities=25% Similarity=0.375 Sum_probs=176.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 34899999999999999999999999999999999999998 9999999999865432 35799999986 36777
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||+||+.++.+..+.. ..+...+++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVGMEDFLNREP---- 138 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCc----
Confidence 89999999865432110 0111234677899999987776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|++++|+..++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 139 -HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 33566777788888776 5999999999
Q ss_pred CeEEEecCHHHHHH---HHHhcCCCCC
Q 000540 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1433)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~~p 424 (1433)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=322.15 Aligned_cols=201 Identities=29% Similarity=0.395 Sum_probs=168.0
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc--ccccceEEEee-cCCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ--ETFARISGYCE-QNDIHSPF 946 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 946 (1433)
+.+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 456799999999999999999999999999999999997653 47999999976432 22456789997 55667788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000540 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 947 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPT 1026 (1433)
+|++|++.+....+. ...++..+.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999987654431 223344456788999999988777764 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999986 6776654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=334.79 Aligned_cols=212 Identities=29% Similarity=0.420 Sum_probs=173.9
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1433)
++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++.+++. +.|||.||+ ..++.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-VeLF~ 423 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VELFD 423 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ceecC
Confidence 467999999999999999999999999999999999999998 99999999999888764 789999995 55666
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||.|||. |+.. ....+.+.++++... +.++ ++.|++.+||.||+.+
T Consensus 424 GTIaeNIa---Rf~~-~~d~~kIieAA~lAg---------------------------vHel--Il~lP~GYdT~iG~~G 470 (580)
T COG4618 424 GTIAENIA---RFGE-EADPEKVIEAARLAG---------------------------VHEL--ILRLPQGYDTRIGEGG 470 (580)
T ss_pred CcHHHHHH---hccc-cCCHHHHHHHHHHcC---------------------------hHHH--HHhCcCCccCccCCCC
Confidence 89999995 2221 111223333333221 1111 5789999999999866
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
. +||||||||+++||||+++|.+++||||-|+||+.....+.+.|.+.. ..++++ ++++ |++.+...+|+|++|++
T Consensus 471 ~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~v-vvia-HRPs~L~~~Dkilvl~~ 546 (580)
T COG4618 471 A-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTV-VVIA-HRPSALASVDKILVLQD 546 (580)
T ss_pred C-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEE-EEEe-cCHHHHhhcceeeeecC
Confidence 5 799999999999999999999999999999999999999999998753 344444 4344 46788999999999999
Q ss_pred CeEEEecCHHHHHHHH
Q 000540 401 GQIVYQGPRELVLEFF 416 (1433)
Q Consensus 401 G~iv~~G~~~~~~~~f 416 (1433)
|++-.+|+++|++...
T Consensus 547 G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 547 GRIAAFGPREEVLAKV 562 (580)
T ss_pred ChHHhcCCHHHHHHHh
Confidence 9999999999998754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=288.68 Aligned_cols=197 Identities=26% Similarity=0.376 Sum_probs=168.8
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc---c----cccceEEEeecCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---E----TFARISGYCEQNDI 942 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~----~~~~~~gyv~Q~~~ 942 (1433)
+...||++|++.+++||-+||+|||||||||||-+|+|...+ .+|+|.+.|++... + -..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 457899999999999999999999999999999999998764 48999999988642 1 23467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000540 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1433)
Q Consensus 943 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlL 1022 (1433)
+.|++|..||+.....++..... .......+.|+.+||.+-.+..+ .+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 99999999999988877753221 22334678899999988766654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||.+||..+...|.+++-.+.+ .|.|.|++||||. +..-|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 999999999999999999988864 4999999999986 5678999999987 5544
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=316.67 Aligned_cols=189 Identities=23% Similarity=0.341 Sum_probs=161.4
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc---c----ccccceEEEeecCCCCC
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK---Q----ETFARISGYCEQNDIHS 944 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 944 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999998653 4799999998742 1 12346799999999988
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000540 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDE 1024 (1433)
+.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999999865432 1233444556889999999988777664 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=292.95 Aligned_cols=204 Identities=26% Similarity=0.383 Sum_probs=177.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
..+|+|+|+.|.+|+.++++||||||||||||+++|+.+|. .|+|.+||++++-- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 99999999988643 34568999999999999999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||++|+.+++|+++. +...++.+++...||++..+. ++-.|
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~-----~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHK-----YIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCccccccc-----ceEee
Confidence 999999999887432 122356778999999987664 45579
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS--NGQ 402 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~--~G~ 402 (1433)
||||||||.|||||..+|+.|+||||+++||.-|+.++.+.|-++.+.. +.-++.|+|+..|..-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999888877654 5566778999999999999999998 579
Q ss_pred EEEecCHHHHH
Q 000540 403 IVYQGPRELVL 413 (1433)
Q Consensus 403 iv~~G~~~~~~ 413 (1433)
|+..=+++-..
T Consensus 213 vv~~~~~df~r 223 (259)
T COG4525 213 VVERLPLDFAR 223 (259)
T ss_pred eeEecCCCHHH
Confidence 99877666333
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=328.00 Aligned_cols=215 Identities=22% Similarity=0.279 Sum_probs=174.7
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVS 921 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1433)
..+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999988763 24699999999999999999999999999999999997542 1357999999
Q ss_pred CccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000540 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVG 992 (1433)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 992 (1433)
|.+... ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.+.++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 223456999999998887 499999988654331 111 23345677888888743 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 578899999999
Q ss_pred ec--------C--cEEEEECCC
Q 000540 1073 KR--------G--GYEIYVGPL 1084 (1433)
Q Consensus 1073 ~~--------G--g~~~y~G~~ 1084 (1433)
++ | |++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 96 2 678888875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=319.25 Aligned_cols=201 Identities=26% Similarity=0.339 Sum_probs=163.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCC--CC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHD--NH 237 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1433)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999987 999999999886543 235799999987 45
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTVV 316 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1433)
++.+||+||+.++....+..... ...+...+.+++.++|. ...+.
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 141 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK--------------------------------EARKEAVLLLLVGVGLPEEVLNR-- 141 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH--------------------------------HHHHHHHHHHHHHCCCChhHhhC--
Confidence 67899999998865432110000 00011124577888885 34454
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+.+|++++|+..++.+++|+|+
T Consensus 142 ---~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 142 ---YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred ---CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEE
Confidence 3457999999999999999999999999999999999999999999998764 324567778888889989999999
Q ss_pred EEcCCeEEEec
Q 000540 397 LLSNGQIVYQG 407 (1433)
Q Consensus 397 vL~~G~iv~~G 407 (1433)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=327.75 Aligned_cols=216 Identities=23% Similarity=0.284 Sum_probs=179.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4789999887631 123589999999999999999999999999999999998653 479999999876
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677789999998864322 1233444556788999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 455 4999999986 78888
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 88863
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=331.72 Aligned_cols=219 Identities=20% Similarity=0.296 Sum_probs=176.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 578999988764210 0013599999999999999999999999999999999998653 479999999875
Q ss_pred cc--------ccccceEEEeecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000540 926 KQ--------ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPG 995 (1433)
Q Consensus 926 ~~--------~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 995 (1433)
.. ...++.++|++|++.. ....|++||+.|..... ....+...+.+.++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 21 2245679999999742 23469999998864322 123344445678899999994 5666553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 579999999999999999999999999999999999999999999998754 899999999986 57789999999996
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=331.85 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=170.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-------CccceEEEecCCCC-
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDN- 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999998 99999999987532 11357999999852
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1433)
.+..+||+||+.|+....+.. ..+...+++++++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 444689999999865422110 011123467789999996 455544
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .++++++++|+..++.++||+|
T Consensus 143 -----~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 -----PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 457999999999999999999999999999999999999999999998743 3677788999999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=330.18 Aligned_cols=219 Identities=21% Similarity=0.281 Sum_probs=179.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
-++++|+++.++... ....+.+|+|||++|++||+++|+|+||||||||+++|+|...+ ..|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 378899988874210 00124699999999999999999999999999999999998653 479999999876
Q ss_pred cc----ccccceEEEeecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 926 KQ----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 926 ~~----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. ...++.+||++|++.. +...||.|++.|..... .....+.++.++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2235679999999742 33469999998865432 2234445567899999999998887764 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .||++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 344 4999999986 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.83 Aligned_cols=196 Identities=29% Similarity=0.424 Sum_probs=166.0
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCCH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1433)
.+|+|+|+++++| +++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 5999999999999 99999999999999999999999988 999999998875432 24579999999888888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.+..+..+... .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 999988654322100 011224567889999987767554 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++... + +++++++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 6778888999999999999999999999
Q ss_pred EEec
Q 000540 404 VYQG 407 (1433)
Q Consensus 404 v~~G 407 (1433)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=326.93 Aligned_cols=205 Identities=25% Similarity=0.347 Sum_probs=169.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC---ccceEEEecCCCC-CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 999999999886432 2457999999863 5778
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++....+.. ..+...+++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 99999998865321110 0011234677889999987776544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.. .++.++++++|+..++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999998754 33456666777777774 7999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=319.88 Aligned_cols=199 Identities=28% Similarity=0.386 Sum_probs=170.5
Q ss_pred EeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc-cccceEEEeecCCCCCCCCCHHHH
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 952 (1433)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~ 952 (1433)
+|+|+|++|+|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 79999999999999999999999999999999997653 479999999876431 224578999999999989999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 000540 953 LLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1433)
Q Consensus 953 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~ 1032 (1433)
+.+..... .....+.++.+.++++.++|.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777764 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1033 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+++.+.+.|++++.+ |+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 999999999986 57788999999986 688888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=362.44 Aligned_cols=209 Identities=28% Similarity=0.378 Sum_probs=176.6
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+||+|+++. +.+.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 46999999999852 234699999999999999999999999999999999998764 48999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-------QSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1433)
.++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 456788999999998875 59999998641 1 22 23467888888876543 4555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999876 589999999985 5677999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 789999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=329.79 Aligned_cols=207 Identities=25% Similarity=0.344 Sum_probs=172.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCC--C---CccceEEEecCCCC-CC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE--F---VPERTAAYISQHDN-HI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 238 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999987 9999999998742 1 12357999999853 34
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
...||+||+.++....+.. ..+....++++++.+||.+..++.
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~--- 138 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------------------------------EDEVRKRVDNALKRTGIEHLKDKP--- 138 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhhhhCC---
Confidence 5689999998865322110 001123467788999998766654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.+|++++|+.+++.++||+|++|
T Consensus 139 --~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 139 --THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4579999999999999999999999999999999999999999999987653 3566777889999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 000540 399 SNGQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1433)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=319.27 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=164.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999987 999999999876432 235799999998889
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 99999999998754322100 011224567888999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . ++++++++|+..++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998743 3 567777888889999999999999
Q ss_pred cCCeE
Q 000540 399 SNGQI 403 (1433)
Q Consensus 399 ~~G~i 403 (1433)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=321.08 Aligned_cols=211 Identities=21% Similarity=0.277 Sum_probs=175.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++. . ..|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 567888877631 1 2389999999999999999999999999999998653 4799999998754
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 12456899999999999999999998653211 111 1233456889999999988777764 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999986 688888875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=327.79 Aligned_cols=203 Identities=26% Similarity=0.383 Sum_probs=169.9
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCC-CCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDN-HIGE 240 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 240 (1433)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4899999999999999999999999999999999999987 9999999998864322 357999999864 4677
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||+||+.|+.+..+.. ..+....++.+++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 89999999865432110 0111234567889999987776544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.. . ++++++++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 3 56677788888887 56999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998864
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=326.57 Aligned_cols=223 Identities=19% Similarity=0.248 Sum_probs=178.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++++..+.. +...+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 788999887742100 0000124699999999999999999999999999999999998763 4799999998764
Q ss_pred cc---cccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000540 927 QE---TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~---~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 1000 (1433)
.. ..++.++|++|++. +.+.+|+.|++.+....+. ........+.++++++.+++. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 21 22346899999875 5678899999987654332 123334445688999999994 555554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57778999999986 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=322.66 Aligned_cols=215 Identities=21% Similarity=0.225 Sum_probs=175.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367888887653 246999999999999999999999999999999999975421 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++ .|++||+.|....... ......++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 8999999886543211 122334456788999998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 688888875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=339.76 Aligned_cols=195 Identities=23% Similarity=0.354 Sum_probs=169.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-------CccceEEEecCCCCCCCCCC
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1433)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999988 99999999987531 12467999999999999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.|+.+.. ...+++++++.+||++..+.. ++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRY-----PG 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCC-----cc
Confidence 999999864200 012356788999998776654 45
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++.+++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999987653 35677788999999999999999999999
Q ss_pred EEEecCHHHHH
Q 000540 403 IVYQGPRELVL 413 (1433)
Q Consensus 403 iv~~G~~~~~~ 413 (1433)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.95 Aligned_cols=215 Identities=26% Similarity=0.292 Sum_probs=174.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 378889987763 2469999999999999999999999999999999999632 21 2379999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 123567999999988877 899999987643321 1122333456778899988753 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999999
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 7 678888875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=331.64 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=178.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVS 921 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1433)
..++++|+++.+.. +...+|+|||++|++||++||+||||||||||+++|+|.... .+..|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999988741 224699999999999999999999999999999999997531 2347999999
Q ss_pred CccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000540 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996 (1433)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1433)
|.++.. ...++.++||+|++.+++ .|++||+.|...... ..+.+..++.+.++++.++|.+-.+..++.. +
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998742 234567999999988774 799999998643211 1112223345678889888754333333332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.||++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999875 799999999986 46778999999986 7
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
+++..|++
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 88999886
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=319.69 Aligned_cols=202 Identities=33% Similarity=0.520 Sum_probs=163.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 66 999999999875433456799999998889999
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHH-HHHHcCCcccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vG~~~ 320 (1433)
||+||+.|+.......... .. .....++. .++.+++.+..++ .
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DA----------------------------IRKKRVEDVLLRDLALTRIGGN-----L 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hH----------------------------HHHHHHHHHHHHhhcchhhhcc-----c
Confidence 9999999875432110000 00 00112233 6788888765554 4
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hHHHhhcCeEEEEc
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPA-PETYNLFDDIILLS 399 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~-~~~~~~~D~iivL~ 399 (1433)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++..+ .+ .++++++|+. .++.+.+|++++|+
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999998654 33 4555566665 68999999999999
Q ss_pred CCeEEEec
Q 000540 400 NGQIVYQG 407 (1433)
Q Consensus 400 ~G~iv~~G 407 (1433)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=322.85 Aligned_cols=206 Identities=19% Similarity=0.343 Sum_probs=171.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35999999999999999999999999999999999999987 9999999998765332 3569999999888888
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.+..+...... ..+....++.+++.+||++..+. .
T Consensus 93 ~tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~ 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------------------------------AEQREDRANELMEEFHIEHLRDS-----M 134 (241)
T ss_pred CcHHHHHhhhhhcccccC---------------------------------HHHHHHHHHHHHHHcCCHHHhhc-----c
Confidence 999999987543211000 00112345678889999865554 3
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.++++.. . +.++++++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 457999999999999999999999999999999999999999999988653 3 55677788888899999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.08 Aligned_cols=214 Identities=22% Similarity=0.302 Sum_probs=174.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSGY 923 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1433)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..... ..+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887653 246999999999999999999999999999999999975421 25799999998
Q ss_pred cCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCC
Q 000540 924 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL----KQSLVGLP 994 (1433)
Q Consensus 924 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~ 994 (1433)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7532 123567999999988887 899999987654321 11223344557888999988642 3332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999865 799999999986 57788999999997
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 221 -G~i~~~g~~ 229 (250)
T PRK14262 221 -GELIEYGPT 229 (250)
T ss_pred -CEEEEecCH
Confidence 678888875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=338.23 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=168.1
Q ss_pred eeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc-------ccccceEEEeecCCCCCCCCCH
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 877 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998653 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
+||+.|+.... ...+.++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12234456889999999998877764 569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999986 57788999999987 688888875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=332.07 Aligned_cols=211 Identities=21% Similarity=0.281 Sum_probs=170.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++..
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 01289999999998632 224679999998765
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
+ +.||+||+.|+....+... . +..+..++.+++..+|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-R--------------------------------KILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-H--------------------------------HHHHHHHHHHHHHcCCcchhhhhhh
Confidence 5 6899999998754321100 0 0011224556777777655556665
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
. ....|||||||||+|||||+.+|+||+|||||+|||+.+...+.++|+++.+ +.++++++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4557999999999999999999999999999999999999999999988643 36777788999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999884
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.26 Aligned_cols=218 Identities=18% Similarity=0.240 Sum_probs=172.6
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSGYP 924 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~~ 924 (1433)
+++|+++.++ .+.+|+|+||++++||+++|+|+||||||||+++|+|... +. +..|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4667776652 2469999999999999999999999999999999999753 11 247999999987
Q ss_pred Ccc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000540 925 KKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 925 ~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1433)
... ...++.++|++|++.+++. |++||+.+....+. ........++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1245679999999888875 99999987643321 1112233445678899999986521111111 13579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1000 SgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~ 1079 (1433)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999986 57788999999997 6888
Q ss_pred EECCC
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 88874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=310.19 Aligned_cols=190 Identities=49% Similarity=0.840 Sum_probs=160.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCC--CCceEEEEEEEcCc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNIKVSGY 923 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 923 (1433)
.++++|+++.++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +..|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478899988774210 001246999999999999999999999999999999999976 5 35899999998
Q ss_pred cCccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 924 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8654345667999999998888999999997642110 399999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557788999999987 6776654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.48 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=175.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1433)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999987763 2469999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL----KQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 993 (1433)
.+... ...++.+||++|++.+++. ||+||+.+....+. .....+.++.++++++.+++.+. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87632 1235679999999888875 99999987643321 11233344567788999988542 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 6 788888875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.99 Aligned_cols=221 Identities=21% Similarity=0.251 Sum_probs=177.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.+. ...+|+|+|+++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999988763 235899999999999999999999999999999999975431 1368999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.+... ...++.++|++|+..+++ .|++||+.+....... ....+.++.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 133567999999988887 8999999876433211 12223345678899999885422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecC-
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1075 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G- 1075 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 578899999999974
Q ss_pred ---cEEEEECCC
Q 000540 1076 ---GYEIYVGPL 1084 (1433)
Q Consensus 1076 ---g~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 789999886
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=323.63 Aligned_cols=201 Identities=26% Similarity=0.374 Sum_probs=168.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999988 99999999987542 34689999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.++.+..+... .+....++.+++.+||++..++. +..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRY-----IWQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCC-----hhhC
Confidence 99988653221100 01122456788999998766644 4579
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS--NGQ 402 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~--~G~ 402 (1433)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++... .++++++++|+..++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999987543 35667778899999999999999998 599
Q ss_pred EEEecCHH
Q 000540 403 IVYQGPRE 410 (1433)
Q Consensus 403 iv~~G~~~ 410 (1433)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.48 Aligned_cols=215 Identities=21% Similarity=0.279 Sum_probs=174.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887763 23699999999999999999999999999999999996431 12479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 123567899999988877 8999999986543211 123334556788888888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 5778899999999
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 7 678888864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=328.47 Aligned_cols=205 Identities=24% Similarity=0.343 Sum_probs=172.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999998 9999999998754322 356999999863 35578
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.++....+.. ..+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998765432110 0111234677899999987777554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++... .++++++++|+.+++.+.||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999987553 3567777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999999875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=337.17 Aligned_cols=190 Identities=24% Similarity=0.369 Sum_probs=166.2
Q ss_pred eeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc-------ccccceEEEeecCCCCCCCCCH
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 877 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+||++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998653 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
+||+.|... ...++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999988877764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|+.++..+++.|+++.++ |+|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999765 899999999986 68889999999996 688888875
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=331.94 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=174.1
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC---CccceEEEecCCCCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF---VPERTAAYISQHDNHIG 239 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~d~~~~ 239 (1433)
+.+++|+||||++.||+.+||+||||+||||+|++|.++.+.+ +|.|+++|++++.. ..++.||.||||.. ++
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv-LF 624 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTV-LF 624 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcce-ee
Confidence 3466999999999999999999999999999999999999987 99999999998643 33578999999655 45
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
+.|+..||.|+. ++...|.+.++++.. +.-=+++++++.++|+||++
T Consensus 625 NdTI~yNIryak----~~AsneevyaAAkAA-----------------------------~IHdrIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 625 NDTILYNIRYAK----PSASNEEVYAAAKAA-----------------------------QIHDRILQFPEGYNTRVGER 671 (790)
T ss_pred cceeeeheeecC----CCCChHHHHHHHHHh-----------------------------hHHHHHhcCchhhhhhhhhc
Confidence 679999999874 222223222222211 11124789999999999999
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
+.+ |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|+|++- |+.++.-.+|.|++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADLILVIS 746 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccEEEEEe
Confidence 997 999999999999999999999999999999999999999999998864 45666543 3456677899999999
Q ss_pred CCeEEEecCHHHHHH
Q 000540 400 NGQIVYQGPRELVLE 414 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1433)
+|+|++.|.+||++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=361.56 Aligned_cols=210 Identities=27% Similarity=0.380 Sum_probs=175.5
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++++||+|+++. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999999852 124699999999999999999999999999999999998764 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
.++ ..+++.+|||+|++.+++ -|++||+.++. .+.+. +.++++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 356788999999998875 69999997531 12222 346677887777653 34555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....||+|++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999986 4577999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 789999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=316.72 Aligned_cols=194 Identities=28% Similarity=0.403 Sum_probs=163.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999887 999999999886532 135799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++....+... ...+..++++++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 88999999998754321100 011234567889999987656544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.++||++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 46999999999999999999999999999999999999999999998643 3 566777889999999999999999
Q ss_pred cCCe
Q 000540 399 SNGQ 402 (1433)
Q Consensus 399 ~~G~ 402 (1433)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.77 Aligned_cols=216 Identities=21% Similarity=0.277 Sum_probs=176.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc-e--EEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 922 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + ..|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899987763 246999999999999999999999999999999999975422 1 479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++ .|++||+.+....+. .....+.++.+.++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 123457999999998887 899999987654331 1123333456778899988843 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999987 6788999999998
Q ss_pred c----CcEEEEECCC
Q 000540 1074 R----GGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~----Gg~~~y~G~~ 1084 (1433)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 4 4789999985
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.16 Aligned_cols=215 Identities=23% Similarity=0.244 Sum_probs=173.8
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367788877653 346999999999999999999999999999999999975421 2479999999
Q ss_pred ccCcc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000540 923 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGLP 994 (1433)
Q Consensus 923 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 994 (1433)
.+... ...++.++|++|++.+++ .||.||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 142 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH---- 142 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC----
Confidence 87531 234567999999998887 899999987643321 1122333456778888888753 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|++
T Consensus 143 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 699999999986 57888999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 688888875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=352.77 Aligned_cols=122 Identities=24% Similarity=0.287 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 000540 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1022 (1433)
Q Consensus 947 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p---~iLlL 1022 (1433)
+||.|++.|...+. . .....+.++.+||... .++. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865432 1 1123578999999763 4444 3569999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEECCC
Q 000540 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1084 (1433)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~Gg~~~y~G~~ 1084 (1433)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999878999999999985 346799999994 57899999985
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=354.22 Aligned_cols=218 Identities=25% Similarity=0.316 Sum_probs=182.1
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++++++ ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 77888887763 34699999999999999999999999999999999998653 4799999998753
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 927 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 927 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..++.++|++|++.+++.+||+|++.+....+.. ...+..+.++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1235689999999889999999999886432211 11223334456889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++. ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999986 688888
Q ss_pred CCCCc
Q 000540 1082 GPLGR 1086 (1433)
Q Consensus 1082 G~~~~ 1086 (1433)
|+...
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.53 Aligned_cols=216 Identities=22% Similarity=0.248 Sum_probs=176.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVS 921 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1433)
..++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999998763 24699999999999999999999999999999999997542 1257999999
Q ss_pred CccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000540 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVG 992 (1433)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 992 (1433)
|.+... ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987642 1345679999999888875 99999987654321 1122233456788899988864 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999975 799999999986 577889999999
Q ss_pred ecCcEEEEECCC
Q 000540 1073 KRGGYEIYVGPL 1084 (1433)
Q Consensus 1073 ~~Gg~~~y~G~~ 1084 (1433)
++ |+++..|+.
T Consensus 241 ~~-G~i~~~g~~ 251 (272)
T PRK14236 241 YM-GKLVEYGDT 251 (272)
T ss_pred EC-CEEEecCCH
Confidence 97 688888875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=319.36 Aligned_cols=202 Identities=25% Similarity=0.328 Sum_probs=167.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 35999999999999999999999999999999999999987 9999999998764332 3569999999888888
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-Cccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTVVGDE 319 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vG~~ 319 (1433)
+||+||+.++.+..+.. .....+.+++.++ +++..++
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~----- 127 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGR----- 127 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhC-----
Confidence 99999998865432100 0011234455555 4444443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.++.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++..+. .++++++++|+..++.+++|+|++|+
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 44579999999999999999999999999999999999999999999987542 35677778889999999999999999
Q ss_pred CCeEEEecCHHHH
Q 000540 400 NGQIVYQGPRELV 412 (1433)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1433)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=327.32 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=170.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC----ccceEEEecCCCC-CCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV----PERTAAYISQHDN-HIG 239 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999988 999999999876422 2467999999863 344
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
..||.||+.|+....+... .+...+++++++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 011234678899999987777654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+.++++++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 469999999999999999999999999999999999999999999987543 35566777888888765 99999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999999875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.30 Aligned_cols=216 Identities=24% Similarity=0.301 Sum_probs=179.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++. .....+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 4788999887641 0123589999999999999999999999999999999998753 479999999876
Q ss_pred cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998764322 1233444456889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 4 46999999997 67888
Q ss_pred ECCC
Q 000540 1081 VGPL 1084 (1433)
Q Consensus 1081 ~G~~ 1084 (1433)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.97 Aligned_cols=206 Identities=22% Similarity=0.298 Sum_probs=166.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998630 1389999999986421 1245799999987766
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----ccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1433)
.+||+||+.|+....+.... .+.+..++.+++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 48999999987543211000 01122345667777763 33343
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+++|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--E-SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 2 36777788999999999999
Q ss_pred EEEEcCCeEEEecCHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~ 413 (1433)
|++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=320.99 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=166.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 3569999999888888
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTVVGDE 319 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vG~~ 319 (1433)
+||+||+.++..... . + + ....++.+++.+ ++.+..++
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~----- 133 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQ----- 133 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhC-----
Confidence 999999988642110 0 0 0 001233445555 35544443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+.+|++++|+
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 3457999999999999999999999999999999999999999999998754 3 4566778899899999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998774
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=337.09 Aligned_cols=199 Identities=23% Similarity=0.396 Sum_probs=170.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCCCCCCC
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1433)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999988 999999999875321 2467999999998999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.|+.+... . .+...+++++++.+||++..++.+ .
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998753210 0 001224577899999987777544 5
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.++++++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999987653 35667778899999999999999999999
Q ss_pred EEEecCHHHHH
Q 000540 403 IVYQGPRELVL 413 (1433)
Q Consensus 403 iv~~G~~~~~~ 413 (1433)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.75 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=169.7
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999763 12379999999987542 1135799999998777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----ccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1433)
+ +||+||+.++.+..+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 9999999986543221000 01122456778899997 44443
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+..++.+++|+
T Consensus 141 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 -----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 4457999999999999999999999999999999999999999999998753 3 5777788999999999999
Q ss_pred EEEEcCCeEEEecCHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~ 413 (1433)
|++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.77 Aligned_cols=204 Identities=25% Similarity=0.370 Sum_probs=170.5
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC--C---ccceEEEecCCCC-CCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDN-HIG 239 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1433)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 99999999987421 1 1357999999852 445
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+||+||+.++....+.. ..+....+.++++.+||.+..++.+
T Consensus 93 ~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~--- 135 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS----------------------------------KEEVEKRVKEALKAVGMEGFENKPP--- 135 (275)
T ss_pred cccHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCchhhcCCh---
Confidence 679999998764221110 0011234567899999987777554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.++||++++|+
T Consensus 136 --~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 136 --HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 5677888999999999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=315.07 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=173.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+... .+.+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888765310 112579999999999999999999999999999999999765 34799999998763
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000540 927 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1433)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++.++.+.++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999998888999999998654321 1233444557889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.||++++|++|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 4899999999975 45789999999874
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.51 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=163.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999988 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||.||+.++....+.. ..+....++.+++.+||.+..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------------------------------SRQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 8899999998864322110 0011234567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +++|++++|+...+ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999875433 45666677887776 559999999
Q ss_pred cCCeEEEe
Q 000540 399 SNGQIVYQ 406 (1433)
Q Consensus 399 ~~G~iv~~ 406 (1433)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.10 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=168.5
Q ss_pred eecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC----CCCceeEEEECCeeCCCCCc-cceEEEecCCCC--CCC
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HIG 239 (1433)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1433)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 6 8999999998764432 257999999864 456
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+|+.|++.+.....+... .+....++++++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987543211100 01123467789999997420 11123
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.+..|||||||||+|||+|+.+|++++|||||+|||..+...+.+.|+++.+ ..++++++++|+.+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999998754 335677778889899999999999999
Q ss_pred CCeEEEecCHHHHH
Q 000540 400 NGQIVYQGPRELVL 413 (1433)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1433)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=323.41 Aligned_cols=194 Identities=21% Similarity=0.278 Sum_probs=165.8
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~--~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEA--REDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHh--hCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999988 99999999876432 467999999988888899999
Q ss_pred HHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCC
Q 000540 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325 (1433)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1433)
|+.++... . ....++.+++.+||.+..+.. +..||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEW-----PAALS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 99875210 0 011245678889998766544 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000540 326 GGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405 (1433)
Q Consensus 326 GGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~ 405 (1433)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++... .+.++++++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999987543 34567778899899999999999999999999
Q ss_pred ecCHH
Q 000540 406 QGPRE 410 (1433)
Q Consensus 406 ~G~~~ 410 (1433)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=313.13 Aligned_cols=173 Identities=24% Similarity=0.303 Sum_probs=136.0
Q ss_pred eeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCHHHHHH
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 954 (1433)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 954 (1433)
|.==.++|..||+++++||||-||||+.++|+|..++. +|+ .. .-.++|=||--.-....||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445778889999999999999999999999976532 443 11 123678888655556789999886
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000540 955 YSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1433)
Q Consensus 955 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~ 1034 (1433)
-...-+... .-...++++-|.|.++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433221111 123457888899999988875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 1035 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 1035 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
..+-+.||+... +++|.+++-||.-. +--..||+++.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999975 48899999999753 444679988875
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=319.90 Aligned_cols=219 Identities=19% Similarity=0.220 Sum_probs=173.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. ...|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367888887653 246999999999999999999999999999999999976531 2369999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+..+.... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 999999886543311 1122234456778888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+.+.||++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 57788999999986 67
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=331.52 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=172.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1433)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986411 238999999998865432 246999999864
Q ss_pred --CCCCCCHHHHHHHhhHhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000540 237 --HIGEMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1433)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1433)
+.+.+||.+++.+....... +..+ . ...+....+.++|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------Q-------------RFGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------c-------------cHHHHHHHHHHHHHHCCCCChHH
Confidence 57889999999764321000 0000 0 00011234677899999975321
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 000540 314 TVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393 (1433)
Q Consensus 314 t~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1433)
+-+..+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+ ..+.++++++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCC
Confidence 12345668999999999999999999999999999999999999999999998754 335678889999999999999
Q ss_pred eEEEEcCCeEEEecCHHHHH
Q 000540 394 DIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 394 ~iivL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=318.46 Aligned_cols=202 Identities=26% Similarity=0.306 Sum_probs=167.0
Q ss_pred ecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000540 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETL 247 (1433)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1433)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765432 358999998888889999999
Q ss_pred HHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChh
Q 000540 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGG 327 (1433)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGG 327 (1433)
.++.+....+.. ..+....++.+++.+||++..++.+ +.||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 886321000000 0011234567889999987666544 469999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEec
Q 000540 328 QRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407 (1433)
Q Consensus 328 qkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G 407 (1433)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++..+. .+.++++++|+..++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999987543 3556777889999999999999999999999988
Q ss_pred CHHHH
Q 000540 408 PRELV 412 (1433)
Q Consensus 408 ~~~~~ 412 (1433)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=314.91 Aligned_cols=191 Identities=24% Similarity=0.364 Sum_probs=161.9
Q ss_pred eeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc-------ccccceEEEeecCCCCCCCCCH
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 877 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
|||+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998653 47999999987531 1234579999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
.||+.+..... .....++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456788999999987666653 569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|+.+++.+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 56788999999997 5776654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.67 Aligned_cols=206 Identities=24% Similarity=0.318 Sum_probs=171.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--C
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999988 9999999998764322 35699999985 3
Q ss_pred CCCCCCHHHHHHHhhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccc
Q 000540 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1433)
+.+.+||+||+.+..... +.. ..+....++.+++.+||+ ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 567899999998754311 000 001123456788999996 45554
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++... .++++++++|+...+.+++|+
T Consensus 147 -----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 -----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcE
Confidence 34579999999999999999999999999999999999999999999987543 356777788999999999999
Q ss_pred EEEEcCCeEEEecCHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~ 413 (1433)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=338.50 Aligned_cols=208 Identities=26% Similarity=0.375 Sum_probs=167.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++.+... ++.+++++|. .|++..
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr-~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR-VHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccc-hHHHHH
Confidence 46999999999999999999999999999999999999998 9999999999877655 4689999995 677888
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|+|+|+..+... ...+.+.++.++ .+ .++. ..+.++..||.+|+.+
T Consensus 427 Tlr~NL~lA~~~----AsDEel~~aL~q---vg------------------------L~~l--~~~~p~gl~t~lge~G- 472 (573)
T COG4987 427 TLRDNLRLANPD----ASDEELWAALQQ---VG------------------------LEKL--LESAPDGLNTWLGEGG- 472 (573)
T ss_pred HHHHHHhhcCCC----CCHHHHHHHHHH---cC------------------------HHHH--HHhChhhhhchhccCC-
Confidence 999999986421 111211111111 00 0111 1234557789999755
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++|||+|.+++++++|||||.|||+.|..++++.|.+.+ ++.++++++|+...+ +.||+|++|++|
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~l-e~~drIivl~~G 548 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRGL-ERMDRIIVLDNG 548 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEecccccH-hhcCEEEEEECC
Confidence 5699999999999999999999999999999999999999999887643 355666677776554 789999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
+++++|+++++++
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.74 Aligned_cols=216 Identities=24% Similarity=0.263 Sum_probs=174.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCce---EEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 922 (1433)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++.. .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 367788887653 3469999999999999999999999999999999999754321 379999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.+++.++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 1335579999999999999999999987643221 1122333455667777776642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999987 5777899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 7 688888875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.90 Aligned_cols=206 Identities=32% Similarity=0.490 Sum_probs=171.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35899999999999999999999999999999999999987 9999999998754322 35699999998777889
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 92 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDY----- 132 (258)
T ss_pred CHHHHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----
Confidence 99999988642111000 001123567888999987666554
Q ss_pred ccCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 322 RGISGGQRKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
..|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++.+.. +.+|++++|+..++.+++|+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 469999999999999999 5999999999999999999999999999876333 466777889999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=361.90 Aligned_cols=211 Identities=24% Similarity=0.363 Sum_probs=175.7
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+||+|+++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 46999999998841 23699999999999999999999999999999999998764 47999999988
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
+++ ..+++.+|||+|++.+++ -|++||+.++.. .+.+. +.+.++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 456788999999998876 499999986421 12222 335677777776543 35556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999985 4899999999986 5678999999987
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 788999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.47 Aligned_cols=215 Identities=25% Similarity=0.265 Sum_probs=174.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP- 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 924 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478889987763 23699999999999999999999999999999999997653 47999999986
Q ss_pred ----Cccc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000540 925 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSL 990 (1433)
Q Consensus 925 ----~~~~---~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 990 (1433)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.+..+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999976432211 1122234456788999999964 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v 1069 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred EEEecCcEEEEECCC
Q 000540 1070 FLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1070 ~~L~~Gg~~~y~G~~ 1084 (1433)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99987 788888875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.94 Aligned_cols=206 Identities=22% Similarity=0.308 Sum_probs=172.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC----------------ccceE
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV----------------PERTA 228 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 228 (1433)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 35999999999999999999999999999999999999987 999999999875321 14579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000540 229 AYISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1433)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1433)
+|++|++.+++.+||.||+.++... .+.. ..+....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------------------------------RAEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 9999998888899999999875321 1100 0011223567789999
Q ss_pred CcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 000540 308 LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPE 387 (1433)
Q Consensus 308 L~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1433)
+++..+. .++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++... .++++++++|+..+
T Consensus 136 l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 9876664 34579999999999999999999999999999999999999999999987643 35677778899999
Q ss_pred HHhhcCeEEEEcCCeEEEecCHHHHH
Q 000540 388 TYNLFDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 388 ~~~~~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.94 Aligned_cols=201 Identities=24% Similarity=0.304 Sum_probs=165.9
Q ss_pred EeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc--eEEEEEEEcCccCccccc-cceEEEeecCCC--CCCCCC
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNIKVSGYPKKQETF-ARISGYCEQNDI--HSPFVT 948 (1433)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 948 (1433)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999976531 147999999987643222 357899999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK---PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1433)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEP 1025 (1433)
+.|++.+...... ......++.++++++.+++. +..++. +..||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 11233345688999999997 344444 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1026 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999986 688888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.21 Aligned_cols=196 Identities=23% Similarity=0.320 Sum_probs=164.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC------ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999875432 135799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 134 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNF--- 134 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC---
Confidence 89999999998654322100 01112356678899998766644
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++..+ . ++++++++|+..++...+|+|++|
T Consensus 135 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 135 --PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred --chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999998753 3 567788899999999999999999
Q ss_pred cCCeEE
Q 000540 399 SNGQIV 404 (1433)
Q Consensus 399 ~~G~iv 404 (1433)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=325.06 Aligned_cols=205 Identities=23% Similarity=0.335 Sum_probs=168.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCC-
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDN- 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1433)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35899999999999999999999999999999999999988 999999999875421 1356999999852
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1433)
.+...||+||+.|+....+... .+....++.+++.+||.. ..+.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~- 141 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEK- 141 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC-
Confidence 3445799999988653221100 011223567788899963 3443
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
.++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|++++|+..++.+++|++
T Consensus 142 ----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 142 ----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 3457999999999999999999999999999999999999999999998753 3 567777888888999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=319.97 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=174.1
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc--eEEEEEEEcC
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNIKVSG 922 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g 922 (1433)
..++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578899987651 25899999999999999999999999999999999986531 1579999999
Q ss_pred ccCccccc-cceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000540 923 YPKKQETF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP---LKQSLVGLPGV 996 (1433)
Q Consensus 923 ~~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~ 996 (1433)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 4466899999876543221 111 2256788999999976 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 57788999999986
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 688888875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=312.94 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=171.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|++..++ ++.+++++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 488899987653 24699999999999999999999999999999999998653 479999999876
Q ss_pred ccccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
.....++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.++|.+..++.+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543334568999999988888999999987654321 11 2234678899999987777654 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
|++|||+++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998878999999999987 68889999999863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=320.85 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=177.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998763 34699999999999999999999999999999999997542 13589999999
Q ss_pred ccCcc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000540 923 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998 (1433)
Q Consensus 923 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1433)
.+... ...++.++|++|++.+++ .|++||+.+...... .....+.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 124567999999988887 899999987643221 12333344456788899998653221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEE
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 999 LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~ 1078 (1433)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999986 57788999999996 688
Q ss_pred EEECCC
Q 000540 1079 IYVGPL 1084 (1433)
Q Consensus 1079 ~y~G~~ 1084 (1433)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 888885
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=319.27 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=173.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 35999999999999999999999999999999999999988 9999999998764332 2469999999989999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++..... ..+... .. ....+....++++++.+|+++..++.+
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~------------~~------------~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASL------------FF------------RLSAEEKDRIEEVLETIGLADEADRLA---- 141 (242)
T ss_pred CCHHHHHHHhhhccc--cccccc------------cc------------ccHHHHHHHHHHHHHHcCCchhhcCCh----
Confidence 999999998643110 000000 00 000012234678899999987666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+.|||||||||+||||++.+|++|+|||||+|||+.++..+.+.|+++.+ +.++++++|+..++.++||+|++|++
T Consensus 142 -~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 142 -GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998743 35777788999999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=314.23 Aligned_cols=194 Identities=26% Similarity=0.327 Sum_probs=160.1
Q ss_pred cCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCC
Q 000540 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFV 947 (1433)
Q Consensus 868 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 947 (1433)
.++.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCC
Confidence 34567899999999999999999999999999999999997653 47999999976421 11123345679
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000540 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1433)
Q Consensus 948 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTs 1027 (1433)
||+||+.+....+. ......++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 100 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999987654321 223344556788999999988777664 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999998777899999999986 56778999999986 6776654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.47 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=169.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC--C---ccceEEEecCCCC-CC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDN-HI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 238 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999988 99999999987421 1 1357999999864 34
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+..|+.||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 56789999988643221100 011223567888999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|++++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998753 3 456777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.28 Aligned_cols=212 Identities=24% Similarity=0.302 Sum_probs=170.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCCC---ccceEEEecCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGE 240 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 5899999999999999999999999999999999998741 113899999999875432 23579999999888889
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++.+..+.... ..+....++++++.+||.+..+... +..
T Consensus 97 ~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDRL-DAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhhh-cCC
Confidence 9999999987543211000 0011234567888899864211111 234
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+.+|+|++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--K-DMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999863 2 46777888998999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999998774
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=354.14 Aligned_cols=218 Identities=26% Similarity=0.307 Sum_probs=181.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378888887753 34699999999999999999999999999999999998653 479999999876
Q ss_pred ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhc--C-CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 926 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLR--L-PP-EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 926 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr--~-~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
... ..++.+||++|++.+++.+||+||+.+..... . .. ..+..+.++.+.++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346899999998899999999998753211 0 00 0122334556889999999988777764 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999877999999999986 57788999999996 68
Q ss_pred EEEECCCC
Q 000540 1078 EIYVGPLG 1085 (1433)
Q Consensus 1078 ~~y~G~~~ 1085 (1433)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 88998864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=319.52 Aligned_cols=215 Identities=25% Similarity=0.250 Sum_probs=174.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1433)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ...|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478889987763 246999999999999999999999999999999999964321 1379999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87542 2235679999999988874 999999987544321 122333456778888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999986 5678899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 7 688888875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.50 Aligned_cols=210 Identities=19% Similarity=0.291 Sum_probs=167.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987510 12899999999875321 23569999998777
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ +||+||+.|+.+..+... .+....++++++.+|+........
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 148 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRL- 148 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 899999998754322100 001123566788888742111111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+++|+|++
T Consensus 149 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~-~~tiiivsH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--K-DYTIVIVTHNMQQAARISDYTGF 225 (258)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--h-CCEEEEEECCHHHHHHhCCEEEE
Confidence 23445799999999999999999999999999999999999999999999874 2 46777788999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+++++.
T Consensus 226 l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 226 FLMGELIEFGQTRQIF 241 (258)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=322.05 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=173.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+..|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999988763 2469999999999999999999999999999999999632 1 13479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 1235679999999888875 99999987643221 1112223455778888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=317.22 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=167.3
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC--CccceEEEec-CCCCCCC
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF--VPERTAAYIS-QHDNHIG 239 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 239 (1433)
..+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3456999999999999999999999999999999999999988 99999999875432 1235799997 5556778
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1433)
.+||+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 8999999988654322100 0112235677889999888876654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEc
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~ 399 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++.++++++|+..++.+++|++++|+
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 6999999999999999999999999999999999999999999998754 334567778888889999999999999
Q ss_pred CCeEEEec
Q 000540 400 NGQIVYQG 407 (1433)
Q Consensus 400 ~G~iv~~G 407 (1433)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=323.28 Aligned_cols=204 Identities=22% Similarity=0.304 Sum_probs=169.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 9999999998754322 357999999864 67788
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|+++|+.|+....+... .+....++.+++.+|+.+..++. +
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYE-----P 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----c
Confidence 99999988654321100 01122456788999998766654 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.. ..++++++++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998754 334566667777777765 9999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999998874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=365.25 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=174.8
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+||++.+. +++++|+|+|++++||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986542 1246999999999999999999999999999999999987 4 37999999988
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-------LKQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 994 (1433)
.++ ..+++.++||+|++.++. -|++||+.++. ++.++ +.++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998876 59999998741 22333 34666777776654 235666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999885 5899999999985 5677999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 688888874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.92 Aligned_cols=194 Identities=28% Similarity=0.428 Sum_probs=161.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999987 9999999998764322 357999999864 4678
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++....+... .+....++.+++.+||++..++.
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 131 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRS----- 131 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 999999988643221100 01112356778899998666644
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.. . ++++++++|+..++.++||+|++|++
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998754 3 56778888999999999999999999
Q ss_pred Ce
Q 000540 401 GQ 402 (1433)
Q Consensus 401 G~ 402 (1433)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=324.12 Aligned_cols=215 Identities=20% Similarity=0.263 Sum_probs=173.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1433)
.+.++|+++.+. ...+|+|+|++|++||+++|+||||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999988763 2359999999999999999999999999999999999642 1 02479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK----PLKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1235679999999988874 999999986543211 12223345677888888874 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.50 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=174.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35999999999999999999999999999999999999988 9999999998765332 2358999999989999
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
+||+||+.++....... +...... +. +..+ ....+....++.+++.+||.+..++.
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~~-~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~----- 150 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------KT-PAFR---------RAESEALDRAATWLERVGLLEHANRQ----- 150 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------cc-cccc---------cchhHHHHHHHHHHHhCChhhhhhCC-----
Confidence 99999999864311000 0000000 00 0000 00011223467788999998766644
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|++++|+..++.+++|++++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999998754 3356777788999999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=369.40 Aligned_cols=205 Identities=28% Similarity=0.358 Sum_probs=166.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+ ++.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCcc-Ccc
Confidence 45899999999999999999999999999999999999998 9999999999987654 4789999997655 567
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++|||.++.. ...+.+.++++. .+ .++. .-.+++..||.+|+.+
T Consensus 542 TI~eNi~~~~~-----~~~e~i~~al~~---a~------------------------l~~~--i~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP-----LTLDEAWEAARM---AG------------------------LAED--IRAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC-----CCHHHHHHHHHH---cC------------------------cHHH--HHhccccccccccCCC-
Confidence 99999998642 111222222211 11 0111 1246778899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
.+||||||||++|||||+++|++|+||||||+||+.++.++.+.|++. ++ ++++++|.. ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecCh-HHHHcCCEEEEEECC
Confidence 579999999999999999999999999999999999999999998764 34 555566654 556789999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.53 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=171.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC----------------CccceE
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF----------------VPERTA 228 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 228 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999987 89999999887421 113579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000540 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1433)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1433)
+|++|++.+++.+||+||+.++.. ..+.. ..+...++.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999888888999999987542 11100 0011234567889999
Q ss_pred Ccccc-cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 000540 308 LDVCA-DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAP 386 (1433)
Q Consensus 308 L~~~~-dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~ 386 (1433)
|.+.. + ..++.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.. . +.++++++|+..
T Consensus 141 l~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQG-----KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 97653 4 34557999999999999999999999999999999999999999999998753 3 567777889999
Q ss_pred HHHhhcCeEEEEcCCeEEEecCHHHHH
Q 000540 387 ETYNLFDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 387 ~~~~~~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.23 Aligned_cols=215 Identities=25% Similarity=0.314 Sum_probs=173.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1433)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478889988763 2469999999999999999999999999999999999754 11 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 123567999999988776 799999987643321 1122233456778899998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 678888774
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=308.91 Aligned_cols=196 Identities=26% Similarity=0.402 Sum_probs=171.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-----c--cceEEEecCCCCCCCCCC
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-----P--ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~--~~~~~yv~Q~d~~~~~lT 242 (1433)
++++..+.-.+|||.|+||||||||+|+|+|+.+|+ +|.|.+||..+.+.. + +|++|||+|+-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999999 999999998764321 1 488999999999999999
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+.||.|+.... .....|++.+.||++|..+ +++.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYPG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCCC
Confidence 999999986321 0012467888999999887 5566
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+|||||.+.|++|+||||.+.||-....+++-.|.++..+ -..-|+.++|...|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 89999999999999999999999999999999999999999999988654 45678889999999999999999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998854
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.85 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=166.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC--C---ccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |....+|+|.++|+++... . .++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 1001289999999987531 1 135799999988777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ .||+||+.++....+.... .+....++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 5999999987543221000 001223556777888754222222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--A-RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCeEEEEEecHHHHHHhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999873 2 357777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=313.18 Aligned_cols=200 Identities=20% Similarity=0.310 Sum_probs=150.0
Q ss_pred CceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCc
Q 000540 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY 923 (1433)
Q Consensus 844 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1433)
|..+-++||+|.++ +.++++++++|-|.-...+||+||||.||||||++|.|...+. .|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhcc--
Confidence 33577788888764 3567899999999999999999999999999999999977642 4543321
Q ss_pred cCccccccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 924 PKKQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.+-.+|+..|... +-..-|.-|.|.-. .+++.++ ....|-.+||...++++- +..|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~------FNlpyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK------FNLPYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh------cCCChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 1235788888543 33345666766421 1222222 346788899988888763 567999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||-||++|..-+..|+||||||||++||.++...+-+.|++. ...||+++||-+. +.+--..++|+.+.|.--..
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999876 4579999999764 55555677777765544344
Q ss_pred CC
Q 000540 1082 GP 1083 (1433)
Q Consensus 1082 G~ 1083 (1433)
|.
T Consensus 784 Gd 785 (807)
T KOG0066|consen 784 GD 785 (807)
T ss_pred cc
Confidence 44
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=318.38 Aligned_cols=218 Identities=19% Similarity=0.242 Sum_probs=175.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1433)
.+..+++++.+ ++..+|+|+|+++++||+++|+|+||||||||+++|+|...+ + ..+|+|.++|
T Consensus 8 ~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 45666666554 345799999999999999999999999999999999997642 1 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ....++.+.++++.+++.+..+...+. ..+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87532 13456799999998877 5999999988754331 1 122345678899999986432222211 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe----
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK---- 1073 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~---- 1073 (1433)
.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.||++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 799999999999999999999999999999999999999999999985 4799999999986 5778899999997
Q ss_pred ---cCcEEEEECCC
Q 000540 1074 ---RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ---~Gg~~~y~G~~ 1084 (1433)
++|+++..|+.
T Consensus 227 ~~~~~G~i~~~g~~ 240 (261)
T PRK14263 227 QGTRTGYLVEMGPT 240 (261)
T ss_pred cccCCceEEEeCCH
Confidence 46899999885
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=360.84 Aligned_cols=206 Identities=20% Similarity=0.262 Sum_probs=166.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1433)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|++.+|+ .|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DT 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-ch
Confidence 5999999999999999999999999999999999999998 9999999999887654 478999999876555 69
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
++|||.++.. ...+.+.++++. .+ .++.++ .|++..||.+|+.+ .
T Consensus 431 i~~NI~~~~~-----~~d~~i~~a~~~---~g------------------------l~~~i~--~lp~Gldt~i~e~g-~ 475 (592)
T PRK10790 431 FLANVTLGRD-----ISEEQVWQALET---VQ------------------------LAELAR--SLPDGLYTPLGEQG-N 475 (592)
T ss_pred HHHHHHhCCC-----CCHHHHHHHHHH---cC------------------------cHHHHH--hccccccccccCCC-C
Confidence 9999998631 111222222211 00 111222 26777899999765 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++|||||+++|++++||||||+||+.++..|.+.|++.. .++|+ +.++|.. +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tv-IivtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTL-VVIAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEE-EEEecch-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998753 23444 4455554 5667899999999999
Q ss_pred EEEecCHHHHHH
Q 000540 403 IVYQGPRELVLE 414 (1433)
Q Consensus 403 iv~~G~~~~~~~ 414 (1433)
+++.|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=324.69 Aligned_cols=209 Identities=23% Similarity=0.313 Sum_probs=170.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 348999999999999999999999999999999999998871123999999998864322 357999999863 6778
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||+||+.|+.+..+.. ..+...+++.+++.+||++..++.
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~----- 140 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSE----- 140 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCC-----
Confidence 99999998865332110 011223467789999998766644
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+++|++++|+..++ ..||++++|++
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999987543 355666777887777 57999999999
Q ss_pred CeEEEecCHHHHHH
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1433)
|++++.|+++++.+
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=314.01 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=167.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35899999999999999999999999999999999999988 999999998875422 35799999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.+.....+.. +..+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 9998765322100 012456788899987666543 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv 404 (1433)
|||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998753 3 456777888888999999999999999999
Q ss_pred EecCHH
Q 000540 405 YQGPRE 410 (1433)
Q Consensus 405 ~~G~~~ 410 (1433)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=310.56 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=164.6
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 45677776652 34699999999999999999999999999999999998653 4799999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1433)
. ..+++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2245678999999988899999999988654321 1 12345788999999987777653 56999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 1005 qRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
||++||+||+++|++|+|||||+|||+.++..+++.|++++++|.|||++||++. .+.+.-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 354444566655
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=282.60 Aligned_cols=202 Identities=27% Similarity=0.378 Sum_probs=171.8
Q ss_pred CccccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-------cceEEEec
Q 000540 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYIS 232 (1433)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 232 (1433)
....+.+||++|++.|++||.++|+|||||||||||-.|+|+-+|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 4456788999999999999999999999999999999999999998 9999999999866532 26899999
Q ss_pred CCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 000540 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1433)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1433)
|...++|+||..||+...+.++|-..+. ........|+.+||.+-.
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~----------------------------------~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSAD----------------------------------SRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCcccc----------------------------------HHHHHHHHHHHhCccccc
Confidence 9999999999999999988776532110 112345678899998776
Q ss_pred cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 000540 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392 (1433)
Q Consensus 313 dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1433)
+ .++.+|||||+|||+||||+...|+|||-||||-+||..|..+|.+.|=.+.+ ..+++.+.++|+ +....-|
T Consensus 141 ~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD-~~LA~Rc 213 (228)
T COG4181 141 T-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHD-PQLAARC 213 (228)
T ss_pred c-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCC-HHHHHhh
Confidence 6 45568999999999999999999999999999999999999999998876654 456777777777 5677889
Q ss_pred CeEEEEcCCeEEE
Q 000540 393 DDIILLSNGQIVY 405 (1433)
Q Consensus 393 D~iivL~~G~iv~ 405 (1433)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=315.02 Aligned_cols=204 Identities=27% Similarity=0.422 Sum_probs=172.5
Q ss_pred eecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1433)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1433)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 457999999988888999999
Q ss_pred HHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCC
Q 000540 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325 (1433)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1433)
|+.++....+... .+....++++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221100 011223566788999987776554 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000540 326 GGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405 (1433)
Q Consensus 326 GGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~ 405 (1433)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.... ++++++++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875432 4567778888899999999999999999999
Q ss_pred ecCHHHHH
Q 000540 406 QGPRELVL 413 (1433)
Q Consensus 406 ~G~~~~~~ 413 (1433)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=322.96 Aligned_cols=218 Identities=22% Similarity=0.373 Sum_probs=174.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478899987763 124699999999999999999999999999999999998653 479999999876
Q ss_pred ccccccceEEEeecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 926 KQETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788988653211000 01111223445778899999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999777 4 7888988
Q ss_pred CCC
Q 000540 1083 PLG 1085 (1433)
Q Consensus 1083 ~~~ 1085 (1433)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=318.15 Aligned_cols=211 Identities=20% Similarity=0.279 Sum_probs=169.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 12389999999987532 124579999998777
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ .||+||+.++.+..+... ..+.+..++.+++.++|.++.+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------------------------------KKVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhhh-
Confidence 76 699999998653221100 0011234566788888864332222
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. . +.++++++|+..++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--K-NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEecCHHHHHHhcCEEEE
Confidence 24566899999999999999999999999999999999999999999999873 2 36777788888899999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=350.52 Aligned_cols=219 Identities=22% Similarity=0.337 Sum_probs=179.4
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778877652 34699999999999999999999999999999999997653224799999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000540 927 QET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EIDSETRKMFIGEVMELVELKPLK-QSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 1000 (1433)
... .++.+||++|++.+++.+||.||+.+....+... ....+..++.++++++.+++.+.. ++.+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 311 2356899999998889999999998764322111 122333445688999999997654 3433 4699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEE
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIY 1080 (1433)
Q Consensus 1001 gGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y 1080 (1433)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999997 67888
Q ss_pred ECCCC
Q 000540 1081 VGPLG 1085 (1433)
Q Consensus 1081 ~G~~~ 1085 (1433)
.|+..
T Consensus 222 ~~~~~ 226 (500)
T TIGR02633 222 TKDMS 226 (500)
T ss_pred ecCcc
Confidence 88765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=320.64 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=170.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC---ccceEEEecCCCC-CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1433)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999988 999999999875432 2457999999863 6778
Q ss_pred CCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
.||.||+.++.+..+.. + .+...+++.+++.+||.+..++.
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 137 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTRE----- 137 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCC-----
Confidence 89999998865322110 0 01112457788899998766654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ..++++++++|+..++. .+|+|++|++
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998754 33556777888888875 6999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=318.75 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=169.0
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCC------C---CccceEEEecCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE------F---VPERTAAYISQHDN 236 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 236 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999987 9999999997631 1 11357999999988
Q ss_pred CCCCCCHHHHHHHhh-HhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000540 237 HIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1433)
+++.+||+||+.+.. ...+.. ..+....++.+++.+||++..++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------------------------------KDQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCC
Confidence 898999999997532 111110 001123457788999998766654
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. . ++++++++|+..++.+++|++
T Consensus 139 -----~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 -----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEE
Confidence 457999999999999999999999999999999999999999999998743 3 566777889999999999999
Q ss_pred EEEcCCeEEEecCHHHH
Q 000540 396 ILLSNGQIVYQGPRELV 412 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~ 412 (1433)
++|++|+++++|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=318.68 Aligned_cols=209 Identities=18% Similarity=0.250 Sum_probs=166.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC--C---ccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... . .++.++|++|+..++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111389999999987421 1 135799999987777
Q ss_pred CCCCHHHHHHHhhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 239 GEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
+ .||+||+.++.+.. +.. ..+...+++++++.+|+........
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS----------------------------------RAEMDERVEWALTKAALWNEVKDKL- 150 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC----------------------------------HHHHHHHHHHHHHHcCCChhhHHHH-
Confidence 6 89999998865322 110 0011224567788888743211111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+++|++++
T Consensus 151 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~-~~tiii~sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 151 HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--Q-DYTVVIVTHNMQQAARCSDYTAF 227 (260)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999873 2 35677788998999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|+++..|+.+++.
T Consensus 228 l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 228 MYLGELIEFGNTDTIF 243 (260)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988774
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=309.41 Aligned_cols=195 Identities=26% Similarity=0.320 Sum_probs=165.0
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4667776542 34689999999999999999999999999999999998653 47999999987532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 928 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
..+++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456799999999888899999999874211 1 2345788999999988776653 569999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEE
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L 1072 (1433)
|++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 577889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=350.47 Aligned_cols=211 Identities=21% Similarity=0.304 Sum_probs=179.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899988763 24699999999999999999999999999999999998653 479999999875
Q ss_pred ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
... . .++.+||++|++.+++.+||+|++.+... . ....++.+.++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 421 1 12458999999999999999999987531 0 1233456788999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999997 678888
Q ss_pred CCCC
Q 000540 1082 GPLG 1085 (1433)
Q Consensus 1082 G~~~ 1085 (1433)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.63 Aligned_cols=200 Identities=23% Similarity=0.376 Sum_probs=167.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999988 9999999998754322 357999999877665 79
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTVVGDEMI 321 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vG~~~~ 321 (1433)
|+||+.++....+ . ....++.+++.+||+ +..++ .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532110 0 011245678889996 34443 45
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++... .+.++++++|+..++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999987542 2456777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=316.87 Aligned_cols=215 Identities=24% Similarity=0.304 Sum_probs=172.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478889887763 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 133567999999988887 6999999886543321 112222345667788887642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.76 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=163.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1433)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999998765432 357999999988888899999998
Q ss_pred HhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhh
Q 000540 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328 (1433)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1433)
++..... ... .+.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT---------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc---------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7542110 000 001234567899999987666544 4799999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEec
Q 000540 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407 (1433)
Q Consensus 329 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G 407 (1433)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++.. ..+.+++.++|+..++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998754 33566777899999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=317.72 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=170.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|.++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 35899999999999999999999999999999999995 566 8999999998765432 23489999999899
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTVVG 317 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vG 317 (1433)
+.+|++|++.+..+...... +.... ...+....++.+++.+||++ ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR------------------GEEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc------------------ccccc---------cHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 00000 00112235678899999973 4554332
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL-FDDII 396 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~-~D~ii 396 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.+|++++|+..++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999998753 346677788888888888 89999
Q ss_pred EEcCCeEEEecCHHHHH
Q 000540 397 LLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=313.44 Aligned_cols=206 Identities=27% Similarity=0.360 Sum_probs=173.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
+.+++|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+... ++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 35999999999999999999999999999999999999987 8999999998765332 4679999999888888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.++....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988654322100 011224567889999987766544 57
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~i 403 (1433)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. ..+.++++++|+..++.+.+|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 2255667788888899999999999999999
Q ss_pred EEecCHHHHH
Q 000540 404 VYQGPRELVL 413 (1433)
Q Consensus 404 v~~G~~~~~~ 413 (1433)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999987664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=356.21 Aligned_cols=207 Identities=28% Similarity=0.434 Sum_probs=164.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.++ +.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SA 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhh-cc
Confidence 35899999999999999999999999999999999999998 9999999999887654 46799999986554 67
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++||+.++.. ....+.+.++.+. .+ .++. .-. ++..||.+|+.+
T Consensus 429 ti~~Ni~~~~~----~~~~~~i~~al~~---~~------------------------l~~~--i~~-p~GldT~vge~g- 473 (574)
T PRK11160 429 TLRDNLLLAAP----NASDEALIEVLQQ---VG------------------------LEKL--LED-DKGLNAWLGEGG- 473 (574)
T ss_pred cHHHHhhcCCC----ccCHHHHHHHHHH---cC------------------------CHHH--HcC-ccccCchhcCCC-
Confidence 99999998642 1111111111111 00 0111 123 677899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++||||++++|++|+||||||+||+.++..+.+.|++.. .++ +++.++|..+. ...+|+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~-tviiitHr~~~-~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNK-TVLMITHRLTG-LEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCC-EEEEEecChhH-HHhCCEEEEEeCC
Confidence 4699999999999999999999999999999999999999999998763 334 44445555544 5679999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
++++.|+++++++
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=316.29 Aligned_cols=210 Identities=19% Similarity=0.275 Sum_probs=167.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCC---CCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGK---LDSSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|. .++. ..+|+|.++|.++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3589999999999999999999999999999999996 3331 13899999999875421 1357999999877
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
+++ .||+||+.++.+..+.... .+.+..++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999887543211000 001223567788899865322222
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+.+|+|+
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--K-DYTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhCCEEE
Confidence 23456799999999999999999999999999999999999999999999873 2 3567778899999999999999
Q ss_pred EEcCCeEEEecCHHHHH
Q 000540 397 LLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999999874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=325.91 Aligned_cols=205 Identities=20% Similarity=0.301 Sum_probs=167.6
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCC----C----CccceEEEecCCCC-
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE----F----VPERTAAYISQHDN- 236 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 236 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5899999999999999999999999999999999999987 9999999998642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTV 315 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1433)
.+...||+||+.|+....+... .+....++.+++.++|+ +..++
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcC-
Confidence 2345699999998653221100 01112356678889995 44554
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
.++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++.++||+|
T Consensus 147 ----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 147 ----SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred ----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 34579999999999999999999999999999999999999999999987643 3567777889999999999999
Q ss_pred EEEcCCeEEEecCHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~ 413 (1433)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=318.75 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=169.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCC--CCC---ccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMD--EFV---PERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 238 (1433)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++. ... .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5899999999999999999999999999999999998762 113899999999875 211 235799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++....+.... ..+....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhhh-c
Confidence 899999999986542211000 0011123566778888743211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++..+ + .++++++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998743 3 67777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=321.07 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=161.3
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++. +.+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 356777766531 124589999999999999999999999999999999998653 4799999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKM-----FIGEVMELV--ELKPLKQSLVGLPGV 996 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~vg~~~~ 996 (1433)
. ..+++.++|++|++.+++ .||.||+.+... ......... ..++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987764 799999976421 111111100 112233333 333333332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|+++ ++ +.||++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 4899999999986 34 56999999997 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 88888875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=320.88 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=170.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC--CCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN--HIG 239 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +.+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999998753221 246999999864 567
Q ss_pred CCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccc
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTVVGD 318 (1433)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vG~ 318 (1433)
.+||.+++.++.+...... ..+....++.+++.+||. +..++.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------------------------------PEQREKQIIETLRQVGLLPDHASYY--- 146 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCChHHHhcC---
Confidence 7899999988654321000 001122456789999994 445543
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ..+++|++++|+..++.++||++++|
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 147 --PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999998754 33566777889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=300.69 Aligned_cols=168 Identities=29% Similarity=0.427 Sum_probs=148.1
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ ...+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5677776652 23599999999999999999999999999999999997653 47999999987543
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 928 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
...++.++|++|++.+++..|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999973 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ .+.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999986 577789999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=360.82 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=167.2
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.++ +.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-ND 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceee-cc
Confidence 45999999999999999999999999999999999999998 9999999999877654 46899999986555 57
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++|||.++..- ....+.+.++++.. + .++.+ -.|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~---~~~~~~i~~al~~~---~------------------------l~~~i--~~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTE---QYSREQIEEAARMA---Y------------------------AMDFI--NKMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCC---CCCHHHHHHHHHHh---C------------------------cHHHH--HhcccccCceeCCCC-
Confidence 999999986310 01112222221110 0 11112 236778899999865
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|++.. . +.+++.++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~-~~tvI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--K-NRTSLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--C-CCEEEEEecch-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999998753 2 34555566654 567889999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=369.23 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=165.7
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+ ++.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFL-FEG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChh-hhc
Confidence 45899999999999999999999999999999999999998 9999999999877654 5789999997654 468
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++|||.++.. ....+.+.++++.. + .++. .-.++...||.+|+.+
T Consensus 568 Ti~eNi~l~~~----~~~~~~i~~al~~~---~------------------------l~~~--i~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWDP----TIPDADLVRACKDA---A------------------------IHDV--ITSRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCCC----CCCHHHHHHHHHHh---C------------------------CHHH--HHhCcCcccceeccCC-
Confidence 99999987531 11112222222111 0 1111 1246778899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .+ .++++++|.. ++...||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~-~T~IiitHrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RG-CTCIIVAHRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cC-CEEEEEecCH-HHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999998875 23 4455566655 456779999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
++++.|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=316.00 Aligned_cols=220 Identities=24% Similarity=0.281 Sum_probs=174.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|||+++++||+++|+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478889887753 2469999999999999999999999999999999999621113579999999875
Q ss_pred ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000540 926 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGV 996 (1433)
Q Consensus 926 ~~~---~~~~-~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1433)
... ...+ .++|++|++.+++.+|+.|++.+....... .+....+..+.+.++++.+++. ...++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999999999999999765432110 0111222345677889999997 34555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEecC
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1075 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G 1075 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999999877999999999986 34455 899999986
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 788999876
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=312.95 Aligned_cols=200 Identities=26% Similarity=0.396 Sum_probs=161.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCC--CCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI--GEMT 242 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999988 9999999987642 346799999987552 4489
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|+||+.++...... .+.. ...+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR----------------------------LSKADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccC----------------------------CCHHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999885421100 0000 00011234677889999987666544 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++..+ .+++++.++|+..++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999998754 3567778899999999999999999886
Q ss_pred EEEec
Q 000540 403 IVYQG 407 (1433)
Q Consensus 403 iv~~G 407 (1433)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=310.79 Aligned_cols=202 Identities=25% Similarity=0.295 Sum_probs=181.5
Q ss_pred eEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc------cc-ccceEEEeecCCCCC
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ------ET-FARISGYCEQNDIHS 944 (1433)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~-~~~~~gyv~Q~~~~~ 944 (1433)
..-++|+|++++.||++.|||-||||||||+++|.++.. ++.|+|.++|.++.. .. .++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456899999999999999999999999999999999876 458999999987532 12 345799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000540 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDE 1024 (1433)
|+.||.||..|+..++ ..+++++++++.++|+.+||.++.++.+ .+||||+||||.+||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4678889999999999999999999884 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1025 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|+|.|||--+..+++-|.++.++ ++|||++|||.+ |.+.+-|||.+|++ |+++-.|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHH
Confidence 99999999999999999888654 899999999997 78899999999985 8999999863
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=319.70 Aligned_cols=215 Identities=21% Similarity=0.226 Sum_probs=172.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1433)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999988763 2358999999999999999999999999999999999753 1 13579999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK----PLKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 993 (1433)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ..+....+..+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 123567999999988877 599999988653321 112222344567777777543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 7 688888875
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=319.34 Aligned_cols=214 Identities=18% Similarity=0.219 Sum_probs=173.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.... .+..|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 588999988763 24699999999999999999999999999999999997531 12479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+.+.++.+++.. ..++.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87532 2345679999999887764 99999987643321 11 122344667788888742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999865 799999999987 5788999999997
Q ss_pred c--------CcEEEEECCC
Q 000540 1074 R--------GGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~--------Gg~~~y~G~~ 1084 (1433)
+ .|++++.|+.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 5789999986
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=318.64 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=178.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.+.... ..+ ...++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67888887763100 000 00135699999999999999999999999999999999997653 4899999998753
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. ...++. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2356799999997 3567799999987643211 1123344455688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999986 57778999999986 6
Q ss_pred EEEEECCCC
Q 000540 1077 YEIYVGPLG 1085 (1433)
Q Consensus 1077 ~~~y~G~~~ 1085 (1433)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 888988864
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=365.91 Aligned_cols=206 Identities=24% Similarity=0.398 Sum_probs=163.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++. +++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lF~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPV-LFSG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcc-cccc
Confidence 46999999999999999999999999999999999999998 9999999999877654 468999999765 4568
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|+||||.++... ...+.+.++++. .+ .++.++ .|++..||.+|+.+
T Consensus 570 TIreNI~~g~~~----~~~e~i~~al~~---a~------------------------l~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLTD----TPDEEIMAAAKA---AN------------------------AHDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCCC----CCHHHHHHHHHH---cC------------------------CHHHHH--hCCCccCCcccCCC-
Confidence 999999987421 111222222111 10 011122 36677899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
..||||||||++||||++++|+|++||||||+||+.+...+.+ .. . ..+.+++.++|.. ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~-~~~~TvIiItHrl-~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---S-RASRTVLLIAHRL-STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---c-cCCCeEEEEeccH-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999998877 22 1 2345566666665 456789999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
+|+++|+++++++
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999865
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.05 Aligned_cols=210 Identities=22% Similarity=0.357 Sum_probs=172.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999998754322 35699999998888889
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.++..-.. +. . .. ........++.+++.+||++..++. +
T Consensus 97 tv~~~~~~~~~~~~-~~----~-------------~~------------~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (265)
T PRK10253 97 TVQELVARGRYPHQ-PL----F-------------TR------------WRKEDEEAVTKAMQATGITHLADQS-----V 141 (265)
T ss_pred cHHHHHHhCccccc-cc----c-------------cC------------CCHHHHHHHHHHHHHcCCHHHhcCC-----c
Confidence 99999987531000 00 0 00 0001123456788999998766644 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++... .++++++++|+..++.+++|+|++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999987542 3567777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=348.71 Aligned_cols=216 Identities=27% Similarity=0.322 Sum_probs=178.6
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 377888887763 24699999999999999999999999999999999998653 479999999875
Q ss_pred cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000540 926 KQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..+++.+||++|++.+++.+||.||+.+....+........+.++.+.++++.++|.+..++.+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 32 1234579999999988999999999987532111111223344556889999999987666653 46999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEE
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYV 1081 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~ 1081 (1433)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999997 577666
Q ss_pred CC
Q 000540 1082 GP 1083 (1433)
Q Consensus 1082 G~ 1083 (1433)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=321.85 Aligned_cols=209 Identities=25% Similarity=0.369 Sum_probs=171.7
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5999999999999999999999999999999999999987 9999999998754322 356999999877888899
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
|.||+.++.... ... .+. . ....+..++.+++.+||++..++.+ +
T Consensus 102 v~e~l~~~~~~~-~~~--------------~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 146 (265)
T PRK10575 102 VRELVAIGRYPW-HGA--------------LGR-F--------------GAADREKVEEAISLVGLKPLAHRLV-----D 146 (265)
T ss_pred HHHHHHhCcccc-ccc--------------ccC-C--------------CHHHHHHHHHHHHHcCCHHHhcCCc-----c
Confidence 999998753210 000 000 0 0011234577889999987666554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... .++++++++|+..++.+.+|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 69999999999999999999999999999999999999999999987543 24667778899999999999999999999
Q ss_pred EEEecCHHHHH
Q 000540 403 IVYQGPRELVL 413 (1433)
Q Consensus 403 iv~~G~~~~~~ 413 (1433)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987763
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=316.84 Aligned_cols=198 Identities=25% Similarity=0.357 Sum_probs=167.6
Q ss_pred EeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc---ccccceEEEeecCCCCCCCCCHH
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 950 (1433)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 950 (1433)
+|+|+|+++++||+++|+|+||||||||+++|+|... . +|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 2 7999999987542 12345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCeEEEe
Q 000540 951 ESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1433)
Q Consensus 951 E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~-------~p~iLlLD 1023 (1433)
||+.+.... .......++.++++++.++|.+..++.+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456789999999987766653 5699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.||++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57789999999986 6888888753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=320.03 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=167.7
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5899999999999999999999999999999999998741 01289999999987531 1235799999987777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ .||+||+.|+.+..+.... ..+....++.+++.+||.+...... +
T Consensus 113 ~-~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 P-KSIYENVAYGPRIHGLARS--------------------------------KAELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred C-CcHHHHHHHHHHhcccccc--------------------------------hHHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 4999999987543221000 0001224567788889864221111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.++++++|+..++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998743 356777888999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=319.90 Aligned_cols=213 Identities=22% Similarity=0.256 Sum_probs=173.1
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999987763 24699999999999999999999999999999999997542 13479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGL 993 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1433)
.+... ...++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999987654332 122 23456788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEE-EE
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1072 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~-~L 1072 (1433)
+..||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 357999999999999999999999999999999999999999999999976 489999999986 5677899975 56
Q ss_pred ecCcEEEEECCC
Q 000540 1073 KRGGYEIYVGPL 1084 (1433)
Q Consensus 1073 ~~Gg~~~y~G~~ 1084 (1433)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 75 788888874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=313.32 Aligned_cols=205 Identities=26% Similarity=0.402 Sum_probs=172.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1433)
++|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 5999999999999999999999999999999999999987 9999999998765333 35799999998888889999
Q ss_pred HHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccC
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1433)
||+.+..+..+... ......++++++.+++....++.+ +.|
T Consensus 91 enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99988654321100 001123467788899976666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv 404 (1433)
|||||||++||++|+.+|++++|||||+|||..+...+.+.|++... ..+.++++++|...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998654 33566777888888899999999999999999
Q ss_pred EecCHHHHH
Q 000540 405 YQGPRELVL 413 (1433)
Q Consensus 405 ~~G~~~~~~ 413 (1433)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988774
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=320.43 Aligned_cols=216 Identities=23% Similarity=0.305 Sum_probs=173.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC--------ccceEEEecCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV--------PERTAAYISQHDN 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 236 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35899999999999999999999999999999999999875223699999999875321 1346999999988
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
+++.+||+||+.++..... . ..... ... ...+.+..++++++.+||++..+..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8888999999987642100 0 00000 000 00112235678899999987666544
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+. .++++++++|+..++.+++|+|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999987643 35677778899999999999999
Q ss_pred EEcCCeEEEecCHHHH
Q 000540 397 LLSNGQIVYQGPRELV 412 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~ 412 (1433)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=313.53 Aligned_cols=202 Identities=22% Similarity=0.371 Sum_probs=169.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1433)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998764332 357999999988888899999998
Q ss_pred HhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhh
Q 000540 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328 (1433)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1433)
++... ..... ...+..++++++.+||++..++.+ +.|||||
T Consensus 94 ~~~~~-~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKLN---------------------------------AAQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred ccccc-ccCCC---------------------------------HHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 75321 00000 001234677899999987777554 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 000540 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408 (1433)
Q Consensus 329 kqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 408 (1433)
|||++||++++.+|++++|||||+|||+.++..+.+.|+++.+.. ++++++++|+..++.+++|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999875433 4567778899999999999999999999999999
Q ss_pred HHHHHH
Q 000540 409 RELVLE 414 (1433)
Q Consensus 409 ~~~~~~ 414 (1433)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887753
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=316.40 Aligned_cols=215 Identities=26% Similarity=0.266 Sum_probs=171.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP- 924 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 924 (1433)
.++++|+++.++ ...+|+|+|++|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 367888887653 23589999999999999999999999999999999998653 47999999876
Q ss_pred ----Cccc-------cccceEEEeecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000540 925 ----KKQE-------TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSL 990 (1433)
Q Consensus 925 ----~~~~-------~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 990 (1433)
.... ..++.++|++|++. ..+.+|+.||+.+..... .. ......++.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3211 12346899999974 345679999987542211 11 111233456788999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v 1069 (1433)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 577789999
Q ss_pred EEEecCcEEEEECCC
Q 000540 1070 FLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1070 ~~L~~Gg~~~y~G~~ 1084 (1433)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 688888875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=330.57 Aligned_cols=211 Identities=24% Similarity=0.349 Sum_probs=178.0
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++||+++++.+ +.++|+|+|+++++||.+||+|+||||||||++.|.|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998743 3479999999999999999999999999999999999765 3489999999886
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS-------LVGLPG 995 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~ 995 (1433)
.. ...++.+++++|...++ .-|+++||..+. ++.+ ++.++++++.+||.++... .+|+ +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 33566789999987665 469999997642 2333 3457899999999875443 3454 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
.+.||||||||++|||+|+++.++++|||||.|||+.|+++|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999988764 899999999976 4688999999997
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 788998875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=315.55 Aligned_cols=210 Identities=21% Similarity=0.323 Sum_probs=166.2
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 4222389999999987431 1245799999987766
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ +||+||+.++....+.... ......++.+++.+++.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221000 001123456677777743211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+.++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++..+ + .++++++|+..++.+.||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 44567999999999999999999999999999999999999999999998742 3 56777889989999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=317.84 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=172.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1433)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899987763 24699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCc-----cccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.+.. ....++.++|++|++.+++ .|+.||+.+....+. .. ...++.+.++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1233567999999988877 599999987653321 11 1233456677888877431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec---
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1074 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--- 1074 (1433)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 68889999999982
Q ss_pred -----CcEEEEECCC
Q 000540 1075 -----GGYEIYVGPL 1084 (1433)
Q Consensus 1075 -----Gg~~~y~G~~ 1084 (1433)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4788998875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.92 Aligned_cols=208 Identities=28% Similarity=0.411 Sum_probs=171.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 34699999997778889
Q ss_pred CHHHHHHHhhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccc
Q 000540 242 TVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1433)
||+||+.++.. ... .. . .+ ..+....++.+++.+||.+..++.+
T Consensus 91 tv~e~l~~~~~~~~~----------~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (256)
T TIGR03873 91 TVRDVVALGRIPHRS----------LW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM---- 135 (256)
T ss_pred CHHHHHHhcchhhhh----------hc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99999988531 000 00 0 00 0011224567888999976666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~ 400 (1433)
..||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.. . ++++++++|+..++.+++|+|++|++
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998753 3 56778888999999999999999999
Q ss_pred CeEEEecCHHHHH
Q 000540 401 GQIVYQGPRELVL 413 (1433)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1433)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.78 Aligned_cols=209 Identities=26% Similarity=0.371 Sum_probs=171.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 35999999999999999999999999999999999999887 9999999998754322 35699999998788889
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||.||+.++..... .. .... ..+....++.+++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~----------------~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SL----------------WGRL------------SAEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hh----------------ccCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988631000 00 0000 0011234567888999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.|||||||||+||+|++.+|++|+|||||+|||+.+...+.+.|+++.. . ++++++++|+..++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999988653 3 567777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999988763
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=347.15 Aligned_cols=206 Identities=24% Similarity=0.309 Sum_probs=172.8
Q ss_pred ceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCCCCCCC
Q 000540 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQNDIHSPF 946 (1433)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~ 946 (1433)
++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35699999999999999999999999999999999998653 479999999875421 234568999999988899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000540 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 947 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPT 1026 (1433)
+||+||+.+..........+..+..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532111111123334456889999999987777664 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |+++..|+..
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 999999999999999999878999999999986 57788999999996 6888888864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=384.83 Aligned_cols=213 Identities=23% Similarity=0.321 Sum_probs=169.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---------------------------------------
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--------------------------------------- 205 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--------------------------------------- 205 (1433)
.++|+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHH
Q 000540 206 ------------LKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (1433)
Q Consensus 206 ------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 270 (1433)
...+|+|++||+++++... ++.++||+|++.+ ++.|++|||.++.. ....+.+.++++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~----~at~eeI~~A~k~A 1335 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKE----DATREDVKRACKFA 1335 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCC----CCCHHHHHHHHHHc
Confidence 0138999999999987654 5789999998654 57899999999742 11223333333221
Q ss_pred HhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecC
Q 000540 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEI 350 (1433)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEp 350 (1433)
+ +++. +..|++.+||.||+.+. .||||||||++|||||+++|+||+||||
T Consensus 1336 ---~------------------------l~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1336 ---A------------------------IDEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred ---C------------------------CHHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 0111 23589999999997665 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcC----CeEE-EecCHHHHHH
Q 000540 351 STGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN----GQIV-YQGPRELVLE 414 (1433)
Q Consensus 351 tsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~----G~iv-~~G~~~~~~~ 414 (1433)
||+||+.++..|.+.|++.....+ .+++++.|.. ++.+.||+|++|++ |+++ ++|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~-~TvIiIaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKAD-KTIITIAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCC-CEEEEEechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999987632223 4455566654 66788999999999 9955 8999999863
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=315.24 Aligned_cols=212 Identities=21% Similarity=0.284 Sum_probs=169.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
..+|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111389999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++.+||+||+.++.+..+.... .+.+..++.+++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 8889999999876432210000 001123566788888854211111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + +++++++|+..++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 134557999999999999999999999999999999999999999999998753 3 5777788999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+++++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=310.84 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=162.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-----CccceEEEecCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHIG 239 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999987 99999999987421 11357999999988888
Q ss_pred CCCHHHHHHHhhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 240 EMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
.+||+||+.++.. .++.. ..+....++.+++.+||++..++.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~--- 132 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------------------------------KAEAEERALELLEKVGLADKADAY--- 132 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhhC---
Confidence 8999999988642 11100 001123456778899998766654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++++.++|+..++.+++|+|++|
T Consensus 133 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 133 --PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred --ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999998754 3 456777889999999999999999
Q ss_pred cCCeE
Q 000540 399 SNGQI 403 (1433)
Q Consensus 399 ~~G~i 403 (1433)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=321.30 Aligned_cols=211 Identities=19% Similarity=0.282 Sum_probs=173.2
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... ..|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988742 12358999999999999999999999999999999999865 269999999876
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL------PGV 996 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 996 (1433)
.. ...++.++|++|++.+++ .|++||+.... ... ++.++++++.+||.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234567999999999887 49999995321 111 23467888999998766655431 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++|||||+.+|+||+|||||++||+.+...+++.|++.. .++|||+++|+++ .+ ..||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999985 34 45999999986 6
Q ss_pred EEEEECCCC
Q 000540 1077 YEIYVGPLG 1085 (1433)
Q Consensus 1077 ~~~y~G~~~ 1085 (1433)
++++.|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 889999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=311.88 Aligned_cols=202 Identities=23% Similarity=0.361 Sum_probs=165.7
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 478899987753 24699999999999999999999999999999999997653 479999999865
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVSGLST 1001 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1001 (1433)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 123567899999988876 5999999875433211 11 124567899999995 355554 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1002 GqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ .+ +.||++++|++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~ 213 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPH 213 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecc
Confidence 9999999999999999999999999999999999999999998754 899999999986 34 569999999643
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=364.87 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=167.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
.++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+ ++.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-f~~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-FYG 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhh-hhh
Confidence 35899999999999999999999999999999999999998 9999999999887654 4789999997654 457
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|++|||.++... ...+.+.++++. .+ .++.+ -.|++..||.+|+.+.
T Consensus 554 TI~eNi~~~~~~----~~~~~i~~a~~~---~~------------------------l~~~i--~~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 554 TLRDNIALGAPY----ADDEEILRAAEL---AG------------------------VTEFV--RRHPDGLDMQIGERGR 600 (694)
T ss_pred hHHHHHhCCCCC----CCHHHHHHHHHH---cC------------------------hHHHH--HhCcccccceecCCCC
Confidence 999999986320 111222222111 00 11112 2467888999998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+||||||||++||||++++|++++||||||+||+.++..|.+.|++.. .+ .+++.++|.. ++.+.||+|++|++|
T Consensus 601 -~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~-~T~iiItHrl-~~~~~~D~iivl~~G 675 (694)
T TIGR03375 601 -SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AG-KTLVLVTHRT-SLLDLVDRIIVMDNG 675 (694)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CC-CEEEEEecCH-HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998753 23 4455556654 466899999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=307.97 Aligned_cols=199 Identities=21% Similarity=0.326 Sum_probs=166.1
Q ss_pred eecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-ccceEEEecCCCCCCCCCCHHH
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRE 245 (1433)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1433)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999988 999999999875432 2467999999988888899999
Q ss_pred HHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccccCC
Q 000540 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325 (1433)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1433)
|+.+..... .... .+.+..++++++.+||++..++. ++.||
T Consensus 90 n~~~~~~~~-~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN---------------------------------AEQQEKVVDAAQQVGIADYLDRL-----PEQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc---------------------------------HHHHHHHHHHHHHcCcHHHhhCC-----cccCC
Confidence 998753210 0000 00122356788999998766654 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000540 326 GGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVY 405 (1433)
Q Consensus 326 GGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~iv~ 405 (1433)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..++++++++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998754 335677778899999999999999999999998
Q ss_pred ecC
Q 000540 406 QGP 408 (1433)
Q Consensus 406 ~G~ 408 (1433)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=314.61 Aligned_cols=212 Identities=18% Similarity=0.268 Sum_probs=168.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|....+|+|+++|+++.+... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 358999999999999999999999999999999999975311228999999998865322 357999999877776 7
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+||+.++.+.++.... .......++.+++.+||........ ++.+
T Consensus 94 tv~eni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN--------------------------------KDEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC--------------------------------hHHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999986533211000 0011223567788889853221111 2345
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . ++++++++|+..++.+.+|+|++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 6799999999999999999999999999999999999999999999864 2 467777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=353.58 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=175.7
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++++|++|+++. +.+.+|+|+|++++|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 46999999998742 224589999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
.++ ..+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 356778999999988775 69999997631 1222 2345667777766543 34555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999885 5899999999986 4567999999987
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 789999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=314.38 Aligned_cols=219 Identities=21% Similarity=0.259 Sum_probs=174.4
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887652 2469999999999999999999999999999999999643 1 12479999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1433)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++.+.++++.+++.+........ .+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 1235679999999888874 99999987643221 112233455678889999885422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999986 68888999999986 68
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=316.83 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=167.9
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 58999999999999999999999999999999999987410 1389999999987421 1235799999998888
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+.+||+||+.++....+... ..+.+..++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------------------------------KKDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 89999999988654321000 0011224566788888842111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998742 3 56777889999999999999999
Q ss_pred c------CCeEEEecCHHHHH
Q 000540 399 S------NGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (1433)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 6 79999999998774
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=357.71 Aligned_cols=212 Identities=27% Similarity=0.416 Sum_probs=177.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+|++|+++. +.+++|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 234699999999999999999999999999999999998764 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
.++ ..+++.++||+|++.+++ -|++||+.++. .+.+. +.++++++..++.+. .|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998876 59999997641 12222 346677777776543 34555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 36799999999999999999999999999999999999999999999886 4899999999986 4678999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 789999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=359.44 Aligned_cols=212 Identities=28% Similarity=0.427 Sum_probs=176.9
Q ss_pred CceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCc
Q 000540 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY 923 (1433)
Q Consensus 844 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1433)
...++|+||+|.++. ++++|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 346999999999852 35799999999999999999999999999999999998764 4899999998
Q ss_pred cCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 000540 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-------PLKQSLVGL 993 (1433)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~ 993 (1433)
++++ ..+++.++||+|++.++. -||+||+.++. .+.+++ .++++++..++. +-.|+.+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhChHHHHHhCcccccceecC
Confidence 8754 456788999999998887 89999998752 123333 344555544333 346778884
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+...||||||||++||||++++|+||+||||||+||+++...|++.++++. +|+|+|+++|+++ ....+|+|++|+
T Consensus 462 -~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~ 537 (567)
T COG1132 462 -RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD 537 (567)
T ss_pred -CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE
Confidence 346799999999999999999999999999999999999999999999876 5789999999986 345599999999
Q ss_pred cCcEEEEECCC
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~Gg~~~y~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 538 ~-G~i~e~G~h 547 (567)
T COG1132 538 N-GRIVERGTH 547 (567)
T ss_pred C-CEEEEecCH
Confidence 7 679999985
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=313.44 Aligned_cols=216 Identities=22% Similarity=0.290 Sum_probs=173.9
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--ce--EEEEEEEc
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNIKVS 921 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~--~~G~i~i~ 921 (1433)
.+.++|+++++. ++.+|+|+||++++||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 377888887653 35699999999999999999999999999999999997542 21 23667676
Q ss_pred CccCcc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000540 922 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSLVGLP 994 (1433)
Q Consensus 922 g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 994 (1433)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665432 2345679999999999999999999988643321 1123344456788999999864 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 699999999986 56688999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 688888875
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=316.34 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=166.5
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999986 3212389999999987531 1235799999988777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+. ||+||+.|+.+..+.... .+...+++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 64 999999886533211000 011123456777888753211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--E-KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999863 2 356777888889999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.35 Aligned_cols=219 Identities=25% Similarity=0.290 Sum_probs=169.9
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56778877653 24699999999999999999999999999999999997321135799999998753
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000540 927 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAW-LRL--PP-EIDSETRKMFIGEVMELVELK-PLKQSLVGLPGVS 997 (1433)
Q Consensus 927 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~-lr~--~~-~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1433)
.. . .++.++|++|++.+++.+|+.+++.+... ++. .. .......++.+++.++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 22468999999988888887776653211 110 00 011222345678889999985 44444321 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-cCEEEEEecCc
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1076 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~Gg 1076 (1433)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 34454 899999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 88898875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.26 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=167.3
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998751 113899999999875321 23569999999877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ +|++||+.|+....+.... .+...+++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 76 8999999987543221000 011123456778888742111111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..++.||||||||++||++++.+|++++|||||+|||+.++.++.+.|++... + .++++++|+..++.+++|++++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999998743 3 5677788888999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=316.87 Aligned_cols=209 Identities=21% Similarity=0.310 Sum_probs=164.0
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 58999999999999999999999999999999999986310 1289999999987421 1235699999998777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ .||+||+.+++...+... +.+..++.+++.+++....+... +
T Consensus 107 ~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 149 (269)
T PRK14259 107 P-KSIYENIAFGARINGYTG-----------------------------------DMDELVERSLRKAAVWDECKDKL-N 149 (269)
T ss_pred h-hhHHHHHhhhhhhcCCcH-----------------------------------HHHHHHHHHHHHhCCcchhhhhh-C
Confidence 7 599999998764322100 00112345566666642111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +.++++++|+..++.++||++++|
T Consensus 150 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~i~~l 226 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--K-NFTIVIVTHNMQQAVRVSDMTAFF 226 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 3456799999999999999999999999999999999999999999999863 2 356778889999999999999999
Q ss_pred cC-----------CeEEEecCHHHHHH
Q 000540 399 SN-----------GQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~-----------G~iv~~G~~~~~~~ 414 (1433)
++ |++++.|+++++.+
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred eccccccccccccceEEEeCCHHHHHh
Confidence 96 67899999988753
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=365.59 Aligned_cols=208 Identities=25% Similarity=0.328 Sum_probs=166.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+ ++.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSG 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhH
Confidence 35899999999999999999999999999999999999998 9999999999877654 4689999998655 567
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
||+|||.++.+. ....+.+.++++.. + .++.+ ..++...||.||+.+
T Consensus 563 TI~eNi~l~~~~---~~~~~~i~~a~~~a---~------------------------l~~~i--~~lp~gldt~i~e~G- 609 (708)
T TIGR01193 563 SILENLLLGAKE---NVSQDEIWAACEIA---E------------------------IKDDI--ENMPLGYQTELSEEG- 609 (708)
T ss_pred HHHHHHhccCCC---CCCHHHHHHHHHHh---C------------------------CHHHH--HhcccccCcEecCCC-
Confidence 999999986321 11112222222111 0 11111 247778899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
.+||||||||++||||++++|++|+||||||+||+.++..+.+.|++. .++ +++.++|.. ++.+.+|+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~-T~IiitHr~-~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDK-TIIFVAHRL-SVAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCC-EEEEEecch-HHHHcCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999863 234 455566655 466889999999999
Q ss_pred eEEEecCHHHHHH
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1433)
++++.|+++++++
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=293.58 Aligned_cols=207 Identities=24% Similarity=0.357 Sum_probs=178.3
Q ss_pred CCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc---ccccceEEEeecCCCCCC
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSP 945 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 945 (1433)
++.+.+|+|+|..|++|.+|+|+|||||||||||.+++++.+ ..+|+|.++|.+... ..+++.++..-|+.....
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 356789999999999999999999999999999999998765 347999999998643 345667788889888888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000540 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1433)
Q Consensus 946 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEP 1025 (1433)
.+||+|-+.|+..-.... ...++.+..++++++.++|.++.|+.. .+||||||||.-||+.|+.+.+.++||||
T Consensus 89 rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred eeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 899999999974322222 223455667999999999999999874 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1026 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
.++||...+..+|+.||+++++ |+|||++.||.+. ...++|+|+-|++ |+++..|++.
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 9999999999999999999976 9999999999874 4456799999997 7999999985
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=304.08 Aligned_cols=179 Identities=25% Similarity=0.324 Sum_probs=150.2
Q ss_pred ceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc-----ccccceEEEeecCCC-CC
Q 000540 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-----ETFARISGYCEQNDI-HS 944 (1433)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 944 (1433)
++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34699999999999999999999999999999999998653 47999999987531 123557899999973 33
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000540 945 PFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1433)
Q Consensus 945 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDE 1024 (1433)
...||+||+.+..... .....+.++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865432 1233344456889999999988777764 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 000540 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1059 (1433)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1059 (1433)
||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=356.64 Aligned_cols=210 Identities=22% Similarity=0.342 Sum_probs=177.5
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999998841 23599999999999999999999999999999999998764 37999999988
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-------QSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1433)
.++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4567889999999999875 9999998742 122 23477888888876533 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|+|+++|+++ ....||+|++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998864 799999999985 5677999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 789998885
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=300.42 Aligned_cols=170 Identities=29% Similarity=0.419 Sum_probs=148.7
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++ .+.+++|+|+++++||+++|+||||||||||+++|+|..+. .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677776552 24699999999999999999999999999999999997653 47999999987532
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000540 928 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002 (1433)
Q Consensus 928 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1433)
...++.++|++|++.+++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999998531 8999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1003 qrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999986 566789999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=306.99 Aligned_cols=198 Identities=29% Similarity=0.375 Sum_probs=163.7
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|++..++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 56778876652 34699999999999999999999999999999999997653 4799999998653
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000540 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006 (1433)
Q Consensus 927 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1433)
....++.++|++|++.+++.+||.||+.+....+. .. ++.+.++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22245678999999888889999999987543321 11 134788999999987666553 4699999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 1007 l~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+ |+++.++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999999999999999999998777999999999986 3433 88877743
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=312.54 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=166.2
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCc
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1433)
++++|+++.++. ..+.+|+|+|+++++|++++|+||||||||||+++|+|...+ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 667788766521 124599999999999999999999999999999999998653 4799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG------LPGVS 997 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 997 (1433)
. ...++.++|++|++.+++ .|+.|++.+... ... +..+.++++.+++.+..+..+. .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 123457899999988776 699999976321 111 2235678888888776665431 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 89999999986 3 479999999997 56
Q ss_pred EEEEC
Q 000540 1078 EIYVG 1082 (1433)
Q Consensus 1078 ~~y~G 1082 (1433)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 66543
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=356.46 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=177.4
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++++|++|+++. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999998752 124699999999999999999999999999999999998764 47999999988
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
.++ ..+++.++|++|++.+++ -|++||+.++. +.+.+ ++.++++++..++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 653 356778999999998876 69999997641 11122 2346677777776543 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
...||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999875 4799999999985 5678999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 788998884
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=304.06 Aligned_cols=194 Identities=23% Similarity=0.282 Sum_probs=160.1
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 4567766542 34699999999999999999999999999999999997653 47999999987532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000540 928 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 928 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1433)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.+.++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 1234678999999888888999999987643321 1 1 234678999999988777654 469999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEE
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1071 (1433)
Q Consensus 1006 Rl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~ 1071 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.. ..+|+++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999999999987779999999999752 23576654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=313.49 Aligned_cols=216 Identities=21% Similarity=0.229 Sum_probs=173.9
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC--c-eEEEEEEEc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIKVS 921 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~ 921 (1433)
..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + ..+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999988763 24699999999999999999999999999999999997542 1 258999999
Q ss_pred CccCc----c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000540 922 GYPKK----Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP----LKQSL 990 (1433)
Q Consensus 922 g~~~~----~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 990 (1433)
|.+.. . ..+++.++|++|++.+++. |++||+.+...... . ......++.+.++++.+++.+ ..++.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-V-KRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-C-ChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87642 1 1245678999999988875 99999987643321 1 111222445778888887742 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEE
Q 000540 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1070 (1433)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~ 1070 (1433)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 357999999999999999999999999999999999999999999999865 699999999986 5778999999
Q ss_pred EEecCcEEEEECCC
Q 000540 1071 LMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1071 ~L~~Gg~~~y~G~~ 1084 (1433)
+|++ |+++..|+.
T Consensus 232 ~l~~-G~i~~~g~~ 244 (265)
T PRK14252 232 YMYM-GELIEFGAT 244 (265)
T ss_pred EEEC-CEEEEeCCH
Confidence 9986 788888875
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.32 Aligned_cols=210 Identities=28% Similarity=0.394 Sum_probs=160.5
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++.. +++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhh
Confidence 567777665310 124689999999999999999999999999999999998653 47999999977532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCC
Q 000540 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL-------VGLPGVS 997 (1433)
Q Consensus 928 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~~ 997 (1433)
...++.++|++|++.+++ .||+|++.+.... ...+ .+.+.++..++.+..+.+ .. ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456999999987776 6999999764211 1111 122333333332221111 11 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999987 7999999999986 34 48999999997 67
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.70 Aligned_cols=211 Identities=20% Similarity=0.335 Sum_probs=167.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 11389999999987532 124579999998877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ .||+||+.++....+.... ...+..+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 76 8999999986533211000 00112345667777875421111 2
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..+++||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++..+ +.++++++|+..++.+++|+|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEEE
Confidence 345568999999999999999999999999999999999999999999998642 35777788888889999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999998774
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=316.19 Aligned_cols=211 Identities=24% Similarity=0.307 Sum_probs=169.1
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCCC----ccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEFV----PERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 45899999999999999999999999999999999998751 013899999999875431 245799999987777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ +||+||+.++.+...... ..+....+..+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP---------------------------------RKEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 6 899999988643211000 0011123456678888865432222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .++++++|+..++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998643 3 67778889999999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=352.39 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=177.8
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999998742 123689999999999999999999999999999999998763 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK------QSLVGLPG 995 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~~~ 995 (1433)
.++ ..+++.++||+|++.+++ -|++||+.++. + +. .++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999998876 59999998742 1 12 234578889999987653 4455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 996 ~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
...||||||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 46799999999999999999999999999999999999999999999885 5899999999986 3467999999996
Q ss_pred cEEEEECCC
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 g~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 788888874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=315.93 Aligned_cols=209 Identities=25% Similarity=0.322 Sum_probs=162.3
Q ss_pred eEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCcc
Q 000540 848 TFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927 (1433)
Q Consensus 848 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1433)
+++|+++.++. .+..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777766531 113589999999999999999999999999999999998653 47999999976532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000540 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK-----MFIGEVMELV--ELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 928 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 997 (1433)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 233567899999988776 6999999764321 1111111 1133444444 444444433 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcE
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 998 ~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~ 1077 (1433)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||++. ++ +.||++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999986 45 45999999997 57
Q ss_pred EEEECCC
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~~y~G~~ 1084 (1433)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 7777764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=314.23 Aligned_cols=206 Identities=23% Similarity=0.362 Sum_probs=168.3
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCee-----CCCCCc-------cceEEEecC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN-----MDEFVP-------ERTAAYISQ 233 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~Q 233 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5899999999999999999999999999999999999988 9999999987 554322 236999999
Q ss_pred CC--CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-
Q 000540 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1433)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1433)
++ .+.+.+|+.||+.+.....+.. .. .+....++++++.+|+.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--------------------------------~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY--------------------------------GDIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 86 3567789999997643211000 00 011224567888999964
Q ss_pred cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 000540 311 CADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390 (1433)
Q Consensus 311 ~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1433)
..++ .+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++.. ..+.++++++|+..++.+
T Consensus 144 ~~~~-----~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDD-----LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhC-----CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHH
Confidence 4443 3457999999999999999999999999999999999999999999998754 335677888999999999
Q ss_pred hcCeEEEEcCCeEEEecCHHHHH
Q 000540 391 LFDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 391 ~~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.17 Aligned_cols=212 Identities=20% Similarity=0.301 Sum_probs=167.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ |....+|+|+++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 358999999999999999999999999999999999976 21113899999998875321 24579999998877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++. ||+||+.++....+.... ..+.+..++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------------------------------KKKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 999999886432211000 0001123566788899865322222
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. . +.++++++|+..++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 23456799999999999999999999999999999999999999999999863 2 46777788998999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=329.86 Aligned_cols=211 Identities=29% Similarity=0.378 Sum_probs=178.5
Q ss_pred ccceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCC-----CccceEEEecCCC--
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHD-- 235 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-- 235 (1433)
....+++||||++++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+.. ..++.+-+|+||+
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4567999999999999999999999999999999999999998 99999999872111 1135677888874
Q ss_pred CCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000540 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTV 315 (1433)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1433)
.+.|.+||+++|.......+... ..+.+.+++++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 67899999999987665432110 11233468889999999842
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 000540 316 VGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 316 vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1433)
..++++.+||||||||++|||||+.+|+++++|||||+||++++.++++.|+++.++ .+.+.+.|+|+..-+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e-~g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE-LGLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHhhCceE
Confidence 445788899999999999999999999999999999999999999999999997654 4678888999999999999999
Q ss_pred EEEcCCeEEEecCHHHHHH
Q 000540 396 ILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 396 ivL~~G~iv~~G~~~~~~~ 414 (1433)
+||.+|+||+.||.+++.+
T Consensus 501 ~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred EEEECCeEEEeCCHHHHhc
Confidence 9999999999999998843
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=312.66 Aligned_cols=209 Identities=23% Similarity=0.283 Sum_probs=167.1
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEECCeeCCCCCc-cceEEEecCCCC--CCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HIGEM 241 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 241 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.+++.... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998810 028999999998754322 257999999864 44567
Q ss_pred CHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccc
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1433)
|+.+++.+.++..+.. .....++.+++.+||.+.. +.. +..+
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~-~~~-~~~~ 138 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAA-RVL-KLYP 138 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChh-hhh-hcCC
Confidence 9999987643221110 0012356678899987521 111 2344
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G 401 (1433)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. .+.+|++++|+..++.+.+|++++|++|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999987543 3567777889999999999999999999
Q ss_pred eEEEecCHHHHH
Q 000540 402 QIVYQGPRELVL 413 (1433)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1433)
++++.|+.+++.
T Consensus 218 ~i~~~~~~~~~~ 229 (254)
T PRK10418 218 RIVEQGDVETLF 229 (254)
T ss_pred EEEEecCHHHHh
Confidence 999999998774
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=312.99 Aligned_cols=210 Identities=23% Similarity=0.350 Sum_probs=165.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|++|++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 112389999999987531 1245799999987777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ +||+||+.++....+.... .+.+..++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 6 8999999987543221000 001123455667777643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.++++++|+..++.+.+|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--K-DYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEEeCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999873 2 356777888888999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.55 Aligned_cols=192 Identities=26% Similarity=0.384 Sum_probs=161.0
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCCCCCCC
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1433)
|+|+++++ ++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999988 999999998864311 1357999999988888899
Q ss_pred HHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccccccc
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1433)
++||+.++.... .. .+....++.+++.+||++..++. ++
T Consensus 92 ~~~~l~~~~~~~---~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~ 130 (214)
T cd03297 92 VRENLAFGLKRK---RN---------------------------------REDRISVDELLDLLGLDHLLNRY-----PA 130 (214)
T ss_pred HHHHHHHHHhhC---CH---------------------------------HHHHHHHHHHHHHcCCHhHhhcC-----cc
Confidence 999998764211 00 00112356678899998665543 45
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 ~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL~~G~ 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++.. .++++++++|+..++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999987653 24667778899999999999999999999
Q ss_pred EEEec
Q 000540 403 IVYQG 407 (1433)
Q Consensus 403 iv~~G 407 (1433)
++..|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=320.16 Aligned_cols=204 Identities=20% Similarity=0.339 Sum_probs=164.6
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C---CCCceeEEEECCeeCCCC-----CccceEEEecCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--S---SLKVSGRVTYNGHNMDEF-----VPERTAAYISQH 234 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~---~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 234 (1433)
..+|+|+|++|++|++++|+||||||||||+++|+|..+ | + +|+|.++|.++... ..++.++|++|+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 359999999999999999999999999999999999854 3 5 89999999987532 124579999999
Q ss_pred CCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----c
Q 000540 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----V 310 (1433)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~ 310 (1433)
+.+++ .||+||+.++.+..+.... ...+..+..+++.+|+. +
T Consensus 129 ~~l~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~ 174 (286)
T PRK14275 129 PNPFP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSD 174 (286)
T ss_pred CCCCc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhh
Confidence 87776 4999999986543211000 00112345566777764 2
Q ss_pred cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 000540 311 CADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390 (1433)
Q Consensus 311 ~~dt~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1433)
..+ ..+..|||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.. +.+|++++|+..++.+
T Consensus 175 ~~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 175 RLD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASR 246 (286)
T ss_pred Hhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 223 34557999999999999999999999999999999999999999999998642 3577788999999999
Q ss_pred hcCeEEEEcCCeEEEecCHHHHH
Q 000540 391 LFDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 391 ~~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
++|++++|++|+++..|+++++.
T Consensus 247 ~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 247 VSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=313.30 Aligned_cols=210 Identities=21% Similarity=0.315 Sum_probs=166.4
Q ss_pred eeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1433)
.+|+|+|+++++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998741 01389999999987531 1246799999988777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+. ||+||+.++....+.... ...+..++++++.+++.+...+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR---------------------------------RVLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 999999886543221000 001123455677777753211122 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .++++++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 56777888989999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.25 Aligned_cols=211 Identities=19% Similarity=0.264 Sum_probs=166.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999998741 1259999999987532 124679999999877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ .||+||+.++....+.... ++....++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FP-KSIFDNVAFGPRMLGTTAQ---------------------------------SRLDEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred Cc-CcHHHHHhhHHHhcCCChh---------------------------------hHHHHHHHHHHHHhCCchhhhhHh-
Confidence 76 4999999987543221000 001122344566666643211111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
++.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++ + . +.++++++|+..++.+.+|++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~-~~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-K-Q-NYTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-c-CCEEEEEeCCHHHHHhhCCEEEE
Confidence 2445679999999999999999999999999999999999999999999986 3 2 46777889999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999998774
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=310.51 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=163.8
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccccccceEEEeecCCCCCCCCCH
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTV 949 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 949 (1433)
..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 346799999999999999999999999999999999998653 4799999884 3566777767778999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000540 950 YESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1433)
Q Consensus 950 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgL 1029 (1433)
.||+.+..... ....+...+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754432 1233444556778888889987776653 569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCCC
Q 000540 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~~ 1085 (1433)
|+.++..+++.|+++.+.|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999998777999999999986 56788999999986 6888888753
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=314.09 Aligned_cols=211 Identities=24% Similarity=0.370 Sum_probs=164.3
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ ..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 467888887653 123589999999999999999999999999999999998653 479999999765
Q ss_pred cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV-G-----LPGV 996 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~ 996 (1433)
.. ..+++.++|++|++.+++. |++||+.+... .... ..+.+.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887765 99999976421 1111 12344455555543333221 0 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCc
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg 1076 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||++. ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6799999999999999999999999999999999999999999999986 5899999999986 34 56999999986 6
Q ss_pred EEEEECCC
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~~y~G~~ 1084 (1433)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 77887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=314.08 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=168.6
Q ss_pred cceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCC
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDN 236 (1433)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 236 (1433)
+..+|+|+|++++||++++|+||||||||||+++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 356999999999999999999999999999999999999761 01389999999987532 12456999999876
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
++ .+|++||+.++....+.. .+....++.+++.+||.+..+...
T Consensus 100 ~~-~~tv~enl~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~l~~~i~~~~ 143 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNRYK-----------------------------------GDLGDRVKHALQGAALWDEVKDKL 143 (261)
T ss_pred cc-cccHHHHHHHHHhhcCch-----------------------------------HHHHHHHHHHHHHcCCchhhhhhh
Confidence 66 699999999875432100 001123566778888754332222
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
+ ...+.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. . ++++++++|+..++.+++|+|+
T Consensus 144 ~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 144 K-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--K-DYTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred h-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 2 3556799999999999999999999999999999999999999999999873 2 3677778899999999999999
Q ss_pred EEc--------CCeEEEecCHHHHH
Q 000540 397 LLS--------NGQIVYQGPRELVL 413 (1433)
Q Consensus 397 vL~--------~G~iv~~G~~~~~~ 413 (1433)
+|+ +|++++.|+++++.
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEecccccccCCceEEEeCCHHHHH
Confidence 995 89999999998764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=312.31 Aligned_cols=208 Identities=20% Similarity=0.269 Sum_probs=163.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCCCceeEEEECCeeCCCCC-----ccceEEEecCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD-----SSLKVSGRVTYNGHNMDEFV-----PERTAAYISQH 234 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1433)
..+|+|+|+++++|++++|+||||||||||+++|+|..+ |+ +|+|.++|+++.... .++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 358999999999999999999999999999999999864 45 899999999875321 23579999999
Q ss_pred CCCCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000540 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1433)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1433)
+.+++ .||+||+.++.+..+... + ...+..+...++.+++.+....
T Consensus 111 ~~~~~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFP-KSIYNNITHALKYAGERR--K-------------------------------SVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCc-ccHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCCcchHH
Confidence 87776 499999988643211000 0 0011223455677777421111
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 000540 315 VVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394 (1433)
Q Consensus 315 ~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1433)
.. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|++++|+..++.+++|+
T Consensus 157 ~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 157 RL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCE
Confidence 11 234567999999999999999999999999999999999999999999998742 3 5677788888999999999
Q ss_pred EEEEcCCeEEEecCHHHHH
Q 000540 395 IILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 395 iivL~~G~iv~~G~~~~~~ 413 (1433)
|++|++|++++.|+.+++.
T Consensus 233 v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 233 TAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=340.16 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCeEE
Q 000540 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1021 (1433)
Q Consensus 946 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~aL~~---~p~iLl 1021 (1433)
.+||.|.+.|...+. .. ....++++.+||... .++. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467788877754331 11 123578888999753 3443 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEECCC
Q 000540 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1084 (1433)
Q Consensus 1022 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~Gg~~~y~G~~ 1084 (1433)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999986 346799999994 57899999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=307.10 Aligned_cols=210 Identities=24% Similarity=0.287 Sum_probs=165.6
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEc--Cc-
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVS--GY- 923 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~- 923 (1433)
++++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ ..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888877642100 00124699999999999999999999999999999999998653 36999998 42
Q ss_pred -cCcc---cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000540 924 -PKKQ---ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQSLVGLP 994 (1433)
Q Consensus 924 -~~~~---~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 994 (1433)
+... .. .++.++|++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 1346899999998999999999998764332 12233344567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEe
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 1073 (1433)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.||+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3579999999999999999999999999999999999999999999999777999999999965 4557899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=311.44 Aligned_cols=208 Identities=23% Similarity=0.335 Sum_probs=165.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 359999999999999999999999999999999999987631 1379999999987531 123579999999888
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----cccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCAD 313 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1433)
++.+|+.||+.++....+...+ + +....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR-D--------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 8889999999876532211000 0 0111233445555543 2233
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 000540 314 TVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393 (1433)
Q Consensus 314 t~vG~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1433)
..++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++. . ++++++++|+..++.+.+|
T Consensus 144 -----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 -----TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--K-VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred -----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCC
Confidence 3455799999999999999999999999999999999999999999999864 2 3677778899999999999
Q ss_pred eEEEEcCCeEEEecCHHHHH
Q 000540 394 DIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 394 ~iivL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.98 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=165.9
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCC-C---CccceEEEecCCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDE-F---VPERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 238 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+|. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 45899999999999999999999999999999999998752 0138999999988742 1 1235799999998777
Q ss_pred CCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1433)
+ .||+||+.++....+.... ......++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------------------------------KVLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999886532211000 001123445666777653221111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEE
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iivL 398 (1433)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+..++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 67777888889999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1433)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 218 LMGELVEHDDTQVIF 232 (249)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=307.96 Aligned_cols=211 Identities=19% Similarity=0.289 Sum_probs=163.5
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|..+ |+...+|+|.++|.++... ..++.++|++|++..
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 358999999999999999999999999999999999865 3211389999999987431 123579999998877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ .||+||+.++.+..+.... + ..+..+...++.+++........
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~i~~~~- 142 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-A--------------------------------VLDEAVETSLKQAAIWDEVKDHL- 142 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCccchhhHH-
Confidence 77 7999999986543221100 0 00112334555666532111111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++... + .++++++|+..++.+.+|+|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998743 3 5677788999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|+++..|+..++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 220 FLTGNLIEFADTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=298.47 Aligned_cols=159 Identities=25% Similarity=0.436 Sum_probs=141.3
Q ss_pred EeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCC---CCCCC
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQND---IHSPF 946 (1433)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ 946 (1433)
+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999998653 479999999876431 2356799999984 57788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000540 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 947 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPT 1026 (1433)
+|++||+.+... ||+|||||++||+||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976320 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecC
Q 000540 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 1075 (1433)
+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++|
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999999777899999999986 677889999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=317.18 Aligned_cols=221 Identities=23% Similarity=0.276 Sum_probs=173.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNIKVSG 922 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1433)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+|||||||||++|+|.... .+..|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588899987763 24699999999999999999999999999999999997531 13579999999
Q ss_pred ccCcc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000540 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EID-SETRKMFIGEVMELVELKPLK 987 (1433)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 987 (1433)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... ....++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 123467999999988777 59999999864322100 011 122345678889999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcC
Q 000540 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1067 (1433)
Q Consensus 988 ~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D 1067 (1433)
+..... .+..||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.||
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 111111 2467999999999999999999999999999999999999999999999976 589999999987 5778899
Q ss_pred EEE-EEecCcEEEEECCC
Q 000540 1068 ELF-LMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1068 ~v~-~L~~Gg~~~y~G~~ 1084 (1433)
+++ +|++ |++++.|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 974 6675 788998875
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=310.74 Aligned_cols=201 Identities=25% Similarity=0.387 Sum_probs=167.7
Q ss_pred eecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCH
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1433)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999874 3 7999999998765432 2468999999878888999
Q ss_pred HHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccccccccc
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1433)
+||+.+..... . .. .+....++++++.+||.+..++. ++.
T Consensus 87 ~~nl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-RT---------------------------------EAVASALNEVAEALGLDDKLGRS-----VNQ 126 (248)
T ss_pred HHHHHhcCccC-C-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCC-----ccc
Confidence 99998753210 0 00 00123456788999998766654 446
Q ss_pred CChhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 000540 324 ISGGQRKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 324 LSGGqkqRvsia~aL~~-------~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1433)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++.. . +.++++++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999998753 3 5677888899999999999999
Q ss_pred EEcCCeEEEecCHHHHH
Q 000540 397 LLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 397 vL~~G~iv~~G~~~~~~ 413 (1433)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=343.34 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=174.0
Q ss_pred eeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcC----
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---- 922 (1433)
Q Consensus 847 i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g---- 922 (1433)
++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|.....+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35677777652 3469999999999999999999999999999999999741013479998872
Q ss_pred -------------------ccCc----------c---ccccceEEEeecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 000540 923 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEIDSET 969 (1433)
Q Consensus 923 -------------------~~~~----------~---~~~~~~~gyv~Q~-~~~~~~lTv~E~l~f~a~lr~~~~~~~~~ 969 (1433)
.++. . ...++.++|++|+ +.+++.+||+|++.+...... ....+
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHH
Confidence 1110 0 1124568999997 677888999999988654321 23344
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 000540 970 RKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1048 (1433)
Q Consensus 970 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g 1048 (1433)
.++++.++++.++|.+..++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999988777654 56999999999999999999999999999999999999999999999965 48
Q ss_pred CEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC
Q 000540 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1049 ~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~ 1084 (1433)
+|||+++|++. .+.+.||++++|++ |++++.|+.
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 99999999986 46778999999997 678888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=310.93 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=166.4
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 35899999999999999999999999999999999987531 11379999999987543 123569999999877
Q ss_pred CCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000540 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVG 317 (1433)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1433)
++ .||+||+.|+.+..+.... .+.+..++.+++.+++.+...+..
T Consensus 99 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FP-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Cc-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-
Confidence 77 5999999987543221000 001123455667777643211111
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 000540 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIIL 397 (1433)
Q Consensus 318 ~~~~~~LSGGqkqRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~~~~~~D~iiv 397 (1433)
+..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+..++.+.+|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 234567999999999999999999999999999999999999999999998743 3 5777788999999999999999
Q ss_pred EcCCeEEEecCHHHHH
Q 000540 398 LSNGQIVYQGPRELVL 413 (1433)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1433)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999998764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=310.41 Aligned_cols=198 Identities=25% Similarity=0.324 Sum_probs=165.5
Q ss_pred eeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1433)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 377888887763 24699999999999999999999999999999999998653 4799999862
Q ss_pred ccccccceEEEeecCCCCCCC--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000540 926 KQETFARISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~~~~~~~--lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1433)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877765 4778776431 1111 234678999999988777653 5699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhcCEEEEEecCcEEEEEC
Q 000540 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082 (1433)
Q Consensus 1004 rqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G 1082 (1433)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5778899999995 4 577888
Q ss_pred CC
Q 000540 1083 PL 1084 (1433)
Q Consensus 1083 ~~ 1084 (1433)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=325.30 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=184.4
Q ss_pred CceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCccCccc----cccceEEEeecCCCCCC
Q 000540 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE----TFARISGYCEQNDIHSP 945 (1433)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 945 (1433)
+..++|+||||++++||++||+|.||||||||+|+|+|...+ .+|+|.++|.+.... ....-|+.|.|+..+.|
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 456899999999999999999999999999999999997663 489999999876432 23456899999999999
Q ss_pred CCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000540 946 FVTVYESLLYSAWLRL-PPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1433)
Q Consensus 946 ~lTv~E~l~f~a~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~aL~~~p~iLlLDE 1024 (1433)
++||.||+.++...+. ..-++.....+...++|+.+++....++.++ .||.||||.|.|||||..+++||+|||
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDE 171 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDE 171 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999987755443 2335667777788999999999644666654 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEecCcEEEEECCC-Cc-ccchHHHHH
Q 000540 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL-GR-HSCHLVSYF 1095 (1433)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~Gg~~~y~G~~-~~-~~~~~~~yf 1095 (1433)
|||.|+....+.+.+.++++.++|.+||++||.+. ++++.|||+.||++ |+.+-.++. +. ...+++...
T Consensus 172 PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 172 PTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRLM 242 (500)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHHh
Confidence 99999999999999999999999999999999997 89999999999997 677887773 42 224555544
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=358.91 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=173.7
Q ss_pred ceeeEeceEeEeecccchhhccccCCceEEeeeeEEEEeCCcEEEEEccCCCChhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1433)
..++|+||+|+++.. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 369999999998531 124699999999999999999999999999999999998764 47999999998
Q ss_pred Ccc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1433)
.++ ..+++.++||+|++.+++ -|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 653 346778999999998875 69999998742 1 222 3346778888887654 34555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhcCEEEEEec
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~~LSgGqrqRl~iA~aL~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 1074 (1433)
..+||||||||++|||||+++|+||+||||||+||+++++.+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999998 22 235899999999985 5678999999986
Q ss_pred CcEEEEECCC
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 Gg~~~y~G~~ 1084 (1433)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 789999984
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=313.28 Aligned_cols=213 Identities=28% Similarity=0.382 Sum_probs=170.0
Q ss_pred ceeecceeEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----CCceeEEEECCeeCCCCCc---cceEEEecCCCC
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN 236 (1433)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 35999999999999999999999999999999999999874 1127999999998764322 346899999876
Q ss_pred CCCCCCHHHHHHHhhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1433)
.++.+||+||+.++...... .. ... ..+....++.+++.+||++..++
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~-- 141 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GAL---------------THRDGEIAWQALALAGATALVGR-- 141 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccC---------------CHHHHHHHHHHHHHcCcHhhhcC--
Confidence 66779999999875311000 00 000 00112345678899999865554
Q ss_pred cccccccCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPE 387 (1433)
Q Consensus 317 G~~~~~~LSGGqkqRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~vi~i~q~~~~ 387 (1433)
.+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+. .++++++++|+..+
T Consensus 142 ---~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~~~~ 217 (272)
T PRK13547 142 ---DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHDPNL 217 (272)
T ss_pred ---CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH
Confidence 34579999999999999999 599999999999999999999999999987543 24667778888899
Q ss_pred HHhhcCeEEEEcCCeEEEecCHHHHH
Q 000540 388 TYNLFDDIILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 388 ~~~~~D~iivL~~G~iv~~G~~~~~~ 413 (1433)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999988763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1433 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 7e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 9e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1433 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-14 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 6e-12 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-23 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 7e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 9e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 8e-08 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 8e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 39/238 (16%)
Query: 858 MPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 912
M + + ++ + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 913 YITGNIKVSGYPKKQETFARISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEID 966
I + G+ Q SPF +V + +L + P D
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105
Query: 967 SETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026
+ + ++ + L L + + LS QR+ + IA + + +I +DEPT
Sbjct: 106 YQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 1027 SGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083
S LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 66/256 (25%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA- 344
A + L L L A +SGGQR+ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCFKQNIHINCG-TAVISL--LQPAPETYNLFDDIIL 397
+ +DE ++ LD + +++ + + T V + + + +L
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLID-LAQSQNMTVVFTTHQPNQVVA---IANKTLL 201
Query: 398 LSNGQIVYQGPRELVL 413
L N Q G +L
Sbjct: 202 L-NKQNFKFGETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 16/186 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGY-PKKQETFA 931
L G+S G + L+G +GAGKTT + +++ + + G + V G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 932 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
R Y + + E L + A S + + E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1051 VVCTIH 1056
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 6e-12
Identities = 58/259 (22%), Positives = 88/259 (33%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G N+ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
++PE AY M E L F A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------------ 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTT 334
E + + ++ GL + + S G +++
Sbjct: 119 ----------------SSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393
++ P L +DE ++GLD ++ KQ G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSNGQIVYQG-PREL 411
I L+ NG IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 35/231 (15%)
Query: 858 MPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT- 915
M M+LQ V++ L +SG R G + L+G +GAGK+TL+ +AG G I
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 916 GNIKVSGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFI 974
+ + + A Y Q PF V+ L + +E +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----L 107
Query: 975 GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTS 1027
+V + L + LS + +R+ +A + ++ +DEP +
Sbjct: 108 NDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
LD + + + + G +V + H D+ +L+K G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 52/269 (19%), Positives = 84/269 (31%), Gaps = 82/269 (30%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV--------TT 334
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINCGTAVISLL-------QP 384
+ L L +DE LD + +I++ Q G A++ +
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQQ-----GLAIVMSSHDLNHTLRH 199
Query: 385 APETYNLFDDIILLSNGQIVYQGPRELVL 413
A LL G+++ G RE VL
Sbjct: 200 A-------HRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 9e-23
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNIKVSGYPKKQETFA 931
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
+I + + I ++V + L A L + K I + +E VE+ LK+
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1050
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 66/249 (26%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE---- 221
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398
+ +D+ +D + +++ I G +IS + E + D L
Sbjct: 150 VNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVNENL 203
Query: 399 SNGQIVYQG 407
Sbjct: 204 HKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 3e-20
Identities = 47/239 (19%), Positives = 78/239 (32%), Gaps = 34/239 (14%)
Query: 817 NSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLN 876
N E + + L D + P K QG +LN
Sbjct: 315 NIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD-----FVLN 369
Query: 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARIS 934
G F + +MG +G GKTTL+ +LAG + G + VS P+K
Sbjct: 370 VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------I 422
Query: 935 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLP 994
TV + F +V++ + + + V
Sbjct: 423 APKFPG-------TVRQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV--- 465
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 466 --QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKK------QETFARI- 933
RPG + L+G +G GK+T + +LAG + G + K Q F ++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 934 -----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
+ Q + P L+L E + +++++L+ + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM----EKSPEDVKRYIKILQLENVLK 216
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1049 RTVV 1052
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 72/261 (27%)
Query: 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 219
+ Q +L G + +++G +GKTTL+ LAG L G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+P+ + Q TVR+ R + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
+K L +D D V +SGG+ +RV +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI------SLLQPAPETYNLFD 393
PA +DE S LDS ++ ++ + L D
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAFIVEHDFIMAT------YLAD 536
Query: 394 DIILLSNGQIVY---QGPREL 411
+I+ + P L
Sbjct: 537 KVIVFEGIPSKNAHARAPESL 557
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 83/267 (31%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG--------- 216
+ +PG++ L+G GK+T L LAGK +L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYF 147
Query: 217 -------HNMDEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
+ + A Q+ ++I ++ + + + ++ R
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRY 205
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQR 329
K ++ + ++ L SGG+
Sbjct: 206 IKILQLEN--------------------VLKRDIEKL------------------SGGEL 227
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI----- 379
+R +G + DE S+ LD + + VI
Sbjct: 228 QRF-----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHD 280
Query: 380 -SLLQPAPETYNLFDDIILLSNGQIVY 405
S+L L D + ++ VY
Sbjct: 281 LSVLD------YLSDFVCIIYGVPSVY 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 32/227 (14%)
Query: 832 HPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDK---LVLLNGVSGAFRPGVLT 888
+ + F P+ + F ++ VD+ ++ ++ K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 889 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPF 946
++G +G GKTT + +LAG T G + ++ V+ K Q I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYE 431
Query: 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKR 1006
TVYE L + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQR 479
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1052
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
+ + G++ ++G +G GKTT + +LAG+ + +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ---------LIPNLCEDNDSWDNV 155
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS--- 989
I + N++ + F + + ++ P +D K G+V EL++
Sbjct: 156 IRAF-RGNELQNYFERLKNGEI-RPVVK-PQYVD-LLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 990 LVGLPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
+V + LS + +R+ IA L+ F DEP+S LD R V R +
Sbjct: 212 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271
Query: 1042 RNTVDTGRTVVCTIHQPSIDIF---EAFDELFLM--KRGGYEIYVGP 1083
R + G+ V+ H D+ D + ++ + G Y I+ P
Sbjct: 272 RRLANEGKAVLVVEH----DLAVLDYLSDVIHVVYGEPGVYGIFSKP 314
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 63/273 (23%)
Query: 108 ERVGID-LPKVEVRYEHLNIEAEAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLT 166
R GI+ + ++ E++ +K ++ E +
Sbjct: 317 TRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRL------VKDYGSF 370
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L+ G I+ G + ++GP GKTT + LAG + + G+V ++
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL---------- 417
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
T AY Q+ E TV E L+ ++L +
Sbjct: 418 TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL----------- 455
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
LK LG+ D V D +SGG+ +RV ++ A
Sbjct: 456 ----------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYL 494
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI 379
+DE S LD + + + N TA++
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 66/213 (30%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL---KVSGRVTYNGHNMDEF 222
+ I+K G + ++GP +GKTT + LAG+L +L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTT 334
+ +K L L+ V D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELE-----NVLDRELHQLSGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ AL F DE S+ LD ++
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 38/234 (16%)
Query: 863 KLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGN 917
+L + K +L +S G L G++GAGKTTL+++L T +G
Sbjct: 23 QLDQIGRMKQGKTIL-KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGT 77
Query: 918 IKVSGYPKKQETF------ARISGYCEQNDIH---SPFVTVYESLL---YSA--WLRLPP 963
+ + G + + I G+ + V + ++ + + +
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 964 EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ ++++LV + Q +G LST +++R+ IA L+ P ++ +D
Sbjct: 136 DEIRNEAH----QLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILD 186
Query: 1024 EPTSGLDARAAAIVMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
EP +GLD A ++ + + ++ H +I F ++ L+K G
Sbjct: 187 EPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 57/264 (21%), Positives = 92/264 (34%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
TILK +S I G +L G +GKTTLL L SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMM 338
A + LK++G+ A I +S G+++RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQ-----YIGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 NLFDDIILLSNGQIVYQGPRELVL 413
F I+LL +GQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 35/208 (16%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIKVSGYPKKQETFARISGYCEQND 941
G ++G +G+GKTTL+ ++G G I ++V Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 942 IHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP--LKQSLVGLPGVSG 998
VTV + + E+ R + E+++ ++L L++ +
Sbjct: 82 EAYEIGVTVNDIVYL------YEELKGLDRDL-FLEMLKALKLGEEILRRK------LYK 128
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 1059 SIDIFEAF---DELFLMKRGGYEIYVGP 1083
++ + G
Sbjct: 184 --ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 46/282 (16%), Positives = 82/282 (29%), Gaps = 71/282 (25%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
+ L++++ + G ++LGP SGKTTLL A++G L SG + NG
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGME 66
Query: 219 MDEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337
E LK L L + + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
ALA + +DE +D++ I G I +
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVI-----SRYIKEYGKEGILVTHELDMLNLYK 192
Query: 393 DDIILLSNGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 193 EYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G + G + ++G +G GKTT + +LAG T G I ++ V+ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
I TVYE L + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1051
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1052 V 1052
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-12
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNIKVSGYPKK--QETFARISGY 936
+ G++ ++G +G GK+T + +LAG+ G + + + + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 937 CEQNDIH----SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
+I +V ++ + K + E+++ + + +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 993 LPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1045 VDTGRTVV 1052
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 56/209 (26%)
Query: 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 219
+ L+ G IK G + ++GP GKTT + LAG + + G++ ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL--- 347
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
T AY Q+ E TV E L+ ++L +
Sbjct: 348 -------TVAYKPQYIKADYEGTVYELLSKIDA-----------SKLNSNFYKTEL---- 385
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
LK LG+ D V + +SGG+ +RV ++
Sbjct: 386 -----------------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQ 368
A +DE S LD + +
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRH 446
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 72/216 (33%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL---KVSGRVTYNGHNMDEF 222
+ ++K G + ++GP +GK+T + LAG+L +L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGTRYEMLTELARREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
V + AL F DE S+ LD
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNA 197
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 46/237 (19%), Positives = 86/237 (36%), Gaps = 27/237 (11%)
Query: 821 HSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG 880
++ + K R + F ++ ++ + + L+ +G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV-DNG 289
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCE 938
+ G + ++G +G GKTT +L G G +T ++ Y K Q F
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP------- 341
Query: 939 QNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998
+ TV + +L + T F EV + + L L +S V +
Sbjct: 342 -----NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----ND 385
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
LS + ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI 942
+ + ++G +G GKTT++ +LAG + N K K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMF--IGEVMELVELKPLKQSLVGLPGVSG-- 998
++ F +Y + L + ++ ++ + + E++ ++ + K + L ++
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 999 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 1053 CTIH 1056
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-08
Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 60/212 (28%)
Query: 160 SRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNM 219
+K L +G K G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE 336
D V A ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
+ A +D+ S+ LD + + K+
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKR 430
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-07
Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 60/256 (23%)
Query: 168 LKDVS-GIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHNMDEFVPE 225
K K + +LG GKTT+L LAG++ + + +V + + F +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGK 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y + + L + Q E ++ + + +
Sbjct: 73 EIYNYFKE------LYSN--ELKIVHKIQ----YVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA- 344
+ + + +L SGG +R+ +V +L
Sbjct: 121 EVKELLNMTN--LWNKDANIL------------------SGGGLQRL-----LVAASLLR 155
Query: 345 ----LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVI------SLLQPAPETYNLFDD 394
D+ S+ LD + ++ + VI +L L D
Sbjct: 156 EADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDL 206
Query: 395 IILLSNGQIVYQGPRE 410
I ++ VY +
Sbjct: 207 IHIIYGESSVYGRVSK 222
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 57/288 (19%), Positives = 103/288 (35%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ IK G +T +LG GK+TL G L S SGR+ ++ +D +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMV 339
LK G++ D +S GQ+KRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390
A+A L +DE + GLD +I+ + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSNGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-15
Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 858 MPQQM-KLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 911
+ + K++ ++ D L G++ + G +TA++G +G GK+TL G + +
Sbjct: 3 LEDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS- 61
Query: 912 GYITGNIKVSGYP--KKQETFARIS---GYCEQNDIHSP---FV--TVYESLLYSAW-LR 960
+G I P ++ ++ G Q+ P +VY+ + + A ++
Sbjct: 62 ---SGRILFDNKPIDYSRKGIMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMK 114
Query: 961 LPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020
LP + E RK + ++ ++ LK LS Q+KR+ IA LV P ++
Sbjct: 115 LPED---EIRKR-VDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 1021 FMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+DEPT+GLD + +M+ + + G T++ H + D +F+MK G
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 27/210 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L VS G + G +G+GK+TL+ ++AG T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 933 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---IDSETRKMFIGEVMELVELKP--- 985
G Q F V++ + ++ + D + + + + ME V L
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAMEFVGLDFDSF 131
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ P LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 132 KDRV----P--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G+TV+ H + D + ++++G
Sbjct: 186 TLGKTVILISHDIE-TVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 54/262 (20%), Positives = 94/262 (35%), Gaps = 77/262 (29%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-- 225
L++VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G + E
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG--ERKKGYEIR 77
Query: 226 RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R Q+ ++ V + +AF+ + + K A
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA----------- 120
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG-----ISGGQRKRVTTGEMMV 339
++ +GLD + + +SGG+++RV
Sbjct: 121 ------------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV------- 147
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYN 390
A+A L +DE GLD ++ ++ G VI + N
Sbjct: 148 --AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVIN 203
Query: 391 LFDDIILLSNGQIVYQG-PREL 411
D +++L G+ V+ G E
Sbjct: 204 HVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNIKVSGYPKKQETFA 931
L G+S + + G +++G SG+GK+TL+ +L T G +V +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 932 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
R + G+ Q I P +T E+ +L + K ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 983 L------KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSI 1060
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 59/218 (27%)
Query: 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEF 222
+ ILK +S +K G ++G SGK+TLL L G LD+ G+V G +D
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYT 71
Query: 223 VPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
+ + ++ Q I E+T E + G + +E+
Sbjct: 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG--- 121
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG---ISGGQRKRV 332
+ L LGL GD++ R +SGG+++RV
Sbjct: 122 -----------------EYL-------LSELGL--------GDKLSRKPYELSGGEQQRV 149
Query: 333 TTGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQ 368
+ P L LF DE TG LDS+ T ++++ F +
Sbjct: 150 AIARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK 185
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 38/212 (17%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNIKVSGYPK 925
++ + L V+ + G ++MG SG+GK+T+++++ + T G NIK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 926 KQETFAR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEIDSETRKMFIGE 976
+ T R I G+ Q N I P +T E+ L++ + E R+ E
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKRALE 127
Query: 977 VMELVEL-------KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+++ EL KP + LS Q++R+ IA L NP II D+PT L
Sbjct: 128 CLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 1030 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1060
D++ +M+ ++ + G+TVV H ++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 58/231 (25%)
Query: 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE 221
++ + LK+V+ IK G ++GP SGK+T+L + G LD G V + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKP--TEGEVYIDNIKTND 71
Query: 222 FVPERTAAY-------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ + Q N I +T E + ++ ++ E+
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI-------FKYRGAMSGEER--- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG----ISGGQRK 330
+ A E LK+ L + +SGGQ++
Sbjct: 122 -----------RKRALE----------CLKMAEL--------EERFANHKPNQLSGGQQQ 152
Query: 331 RVTTGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINCGTAVI 379
RV + P + + D+ T LDS T +I+ K+ ++ G V+
Sbjct: 153 RVAIARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV 200
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 3e-14
Identities = 84/609 (13%), Positives = 181/609 (29%), Gaps = 148/609 (24%)
Query: 760 VLLFNLGFTLALTFLNRLEKPRAILTEESESN--EQDSTIGGTVQL----STHGESG--- 810
+ +F F + + P++IL++E + + GT++L + E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 811 --NDIRERN-----------SSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVD 857
++ N S+ + F ++++ + +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL- 140
Query: 858 MPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITG 916
+ L + K VL++G + G+GKT + +DV K +
Sbjct: 141 ---RQALLELRPAKNVLIDG-------------VL--GSGKTWVALDVCLSYKVQCKMDF 182
Query: 917 NI---KVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
I + + + Q D + S + + I S
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHS-SNIKLRIHSIQA--- 232
Query: 974 IGEVMELVELKPLKQSLVGLPGVSG-------------LSTEQRKRLTIAVELVANPSII 1020
E+ L++ KP + L+ L V L T + K++T + A + I
Sbjct: 233 --ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHI 289
Query: 1021 FMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079
+D + L +++++ + V T + + I L ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK- 348
Query: 1080 YVGPLGRHSCHLVSYFEAIPGVEKIKDGYN-----------PAT-----WMLEVSAPSQE 1123
+V + + + S + E + ++ P W + +
Sbjct: 349 HVN-CDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 1124 VALGVDFSDIYKRSELYRRNK-------SLIEDLSKPAPGSKDLH--FAAQYS-QSAFTQ 1173
V + ++K S + ++ K S+ +L LH Y+ F
Sbjct: 407 VV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-- 459
Query: 1174 FLACLWKQHWSYWRNPAYTAVRFFFTTFIALLLGSIFWDLG---GKTEKRQDLLNAMGSM 1230
Y Y + +G E + + ++
Sbjct: 460 ---DSDDLIPPYLDQ--Y-----------------FYSHIGHHLKNIEHPERM-----TL 492
Query: 1231 FTAIMFLGIQYCSSVQPIVSVERTVFYREKAAGMYSGIPWALAQVMIEIPYIFVQSLVYS 1290
F + FL ++ +E+ + + A I L Q+ PYI Y
Sbjct: 493 FRMV-FLDFRF---------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 1291 SIVYAMMEF 1299
+V A+++F
Sbjct: 543 RLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 94/596 (15%), Positives = 179/596 (30%), Gaps = 182/596 (30%)
Query: 67 EAFEVDVSNLGPQERQRLINKLVTVPEVDNEKFLLKLKNRIERV----GIDLPK------ 116
+AF V N ++ Q + +++ E+D+ ++ K+ + L K
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 117 ------VEVRYEHLNIEAEAYIASKALPSF-TKFYTSIFEGFLNYLHILP----SRKQHL 165
+ + Y+ L + PS T+ Y + N + SR Q
Sbjct: 81 KFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTL------------------------------- 194
L+ ++P + L+ G SGKT +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 195 ----LLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQH---------DNHIGEM 241
L L ++D + + N + + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 242 TVR--ETL-AFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
V+ + AF+ C+ + TR++ +T+ I D T + ++
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSL 306
Query: 298 ITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP-ALALFMDEISTGLDS 356
+ LK L ++ + V T P L++ + I GL +
Sbjct: 307 L----LKYLDCRP-------QDL--------PREVLTT----NPRRLSIIAESIRDGLAT 343
Query: 357 STTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI-ILLSNGQI------------ 403
++ VNC K I + +++L+PA E +FD + + + I
Sbjct: 344 WDNWKHVNCDKLTTIIE---SSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 404 VYQGPRELVLEFFE-SMGFKCPKRK--GVADFLQEVTSKKDQK---------QYWVHKER 451
+ +V + + S+ K PK + E+ K + + Y + K
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 452 P-------------YRFV-----------TVQEFTEGFQSFH-VGQKISDELQTPFDKSK 486
Y + + F F F + QKI + T ++ S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASG 518
Query: 487 SHRAALTT-EVYGAGRRELLKACISRELL-------LMKRNSFVYIFK---LIQIA 531
S L + Y + + E L L K + K L++IA
Sbjct: 519 SILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 4e-13
Identities = 99/748 (13%), Positives = 207/748 (27%), Gaps = 240/748 (32%)
Query: 121 YEHLNIEA--EAYIASKALPSFTKFYTSIFEGFLNYLHILPSRKQHLTILKDVSGIIKPG 178
+ H++ E Y L F + F+ + K L+ +++ II
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSK-EEIDHIIMS- 57
Query: 179 RLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD-EFVPER----------- 226
A T L L ++ + ++ +F+
Sbjct: 58 -------KDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY-M 285
T YI Q D + V F+ V +R + +L R+ ++P ++ + +
Sbjct: 109 TRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGV 158
Query: 286 KAIATEGQEANVITDYYLK-VLGLDVCADTVVGDEMIRGI---SGGQRKRVTTGEMMVGP 341
G K + LDVC V +M I + T M+
Sbjct: 159 LGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 342 ALALFMDEISTGLDSSTTF---------QIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
L ++ D S+ ++ K + NC LL +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------LL--------VL 250
Query: 393 DDIILLSNGQIVYQGPRELVLEFFESMGFKCP-----KRKGVADFLQEVTSKKDQKQYWV 447
++ N + + C + K V DFL T+
Sbjct: 251 LNV---QNAKAW------------NAFNLSCKILLTTRFKQVTDFLSAATTTH------- 288
Query: 448 HKERPYRFVTVQEFTEGFQSFHVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKA 507
+++ + TP D+ K LL
Sbjct: 289 --------ISLDHHSMTL--------------TP-DEVK----------------SLLLK 309
Query: 508 CISRELLLMKRNSFVYIFKL-IQIASVALVYMTLFFRTKMHKDSVTDGGIYAGAL---FF 563
+ + L ++ + +++
Sbjct: 310 YLD-----CR------PQDLPREVLTTNPRRLSII-----------------AESIRDGL 341
Query: 564 ATV----MVMFNGFSE-ISMTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPISFLE 615
AT V + + I ++ L P Y++ FPP A IP L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLS 393
Query: 616 VAVWVFLTYYVIGLDPNAGRFFKQYFLLLAANQMAS----ALFRLIAATGRNMVV--ANT 669
+ +W + + + N +Y L+ + ++ +++ + N +
Sbjct: 394 L-IWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 670 FGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSY----AQNAIVANEF----LGHSW 721
+ + F + D Y+ S + + ++ F L +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 722 --KKF--------TPNSIESLGVQVLKSRGFFA-HAYWFWLGLGALFGFVLLFNLGFTLA 770
+K SI + Q+ + + + + + A+ F L + L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLI 560
Query: 771 LT-FLNRLEKPRAILTEES----ESNEQ 793
+ + + L A++ E+ E+++Q
Sbjct: 561 CSKYTDLLR--IALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 99/596 (16%), Positives = 168/596 (28%), Gaps = 194/596 (32%)
Query: 39 EEALKWAAIEKLPTYNRLKKGLLTTSRGEAFEVDVSNLGPQERQRLINKLVTVPEVDNEK 98
EE L+ Y L + T R + + ++R RL N DN+
Sbjct: 84 EEVLR-------INYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYN--------DNQV 125
Query: 99 FLLKLKNRIERVGIDLPKVEVRYEHL-NIEAEAYI-------------ASKALPSF---T 141
F +R++ P +++R + L + + A S+
Sbjct: 126 FAKYNVSRLQ------PYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 142 KFYTSIF----------EGFLN-----YLHILP---SRKQHLTILKDVSGIIKPGRLTLL 183
K IF E L I P SR H + +K I+ LL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 184 LGPPASGKTTLLLALAGKLD--------SSLKVSGRV---TYNGHNMDEFVPERTAAYIS 232
P + LL+ L ++ +S ++ T D F+ T +IS
Sbjct: 239 KSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHIS 290
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
+ + +T E + + + R + L + P + IA
Sbjct: 291 LDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PREVLTTNP-----RRLSIIAESI 337
Query: 293 QEANVITDYYLKVLG------LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
++ D + V ++ + + E RK L++F
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------RLSVF 381
Query: 347 MDE--ISTGL--------DSSTTFQIVN-CFKQNIHINCGTAVISLL--QPAPETYNLFD 393
I T L S +VN K SL+ QP T ++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-----------SLVEKQPKESTISI-P 429
Query: 394 DIILLSNGQIVYQGP--RELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWV---- 447
I L ++ + R +V + + PK F + QY+
Sbjct: 430 SIYLELKVKLENEYALHRSIV----DH--YNIPKT-----FDSDDLIPPYLDQYFYSHIG 478
Query: 448 -H---KERPYRFVTVQEFTEGFQSFH-VGQKI-------------SDELQTPFDKSKSHR 489
H E P R F F F + QKI + LQ K +
Sbjct: 479 HHLKNIEHPERM---TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPY- 533
Query: 490 AALTTEVYGAGRRELLK--------------ACISRELLLMKRNSFVYIFKLIQIA 531
Y +L + R + LM + ++ Q+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAHKQVQ 588
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ- 927
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N ++ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 928 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEIDSE 968
TF Q P +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 969 TRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEKAF-KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVV 1052
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + ++ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE---- 336
M A + L+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 8e-10
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 934 SGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
Y E + D +V + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 9e-10
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 40/225 (17%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVS 921
D L VS PG AL+G SGAGK+T++ D+ +G I++
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 922 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
G Q T A G Q ND T+ +++ Y E+++ +
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 974 IGE-VMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
I + +M P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 169 IHDAIMAF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDT 223
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
+ ++ V RT + H+ S + A D++ ++K G
Sbjct: 224 SNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 29/213 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNIKVSGYPKKQETFA-- 931
L ++ G AL+G +G+GK+T+ +L R Y G+IK+ G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 932 -RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE-VMELVELK 984
I G Q N+ T+ ++LY E+ T+ + + + L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---- 141
Query: 985 PLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P K ++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V +
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
+ RT++ H+ S I A + + L+ +G
Sbjct: 201 -LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 72/222 (32%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVS 921
D V+L+ ++ + + G + ++G SG+GK+TL G+ + +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 922 GYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 964
G+ Q+ R ++ +++ + P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----PG 109
Query: 965 IDSET----RKM-----FIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELV 1014
+ E K+ FI EL ++VG G LS QR+R+ IA LV
Sbjct: 110 MSVEKVIYAAKLAGAHDFI---SEL----REGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 63/233 (27%), Positives = 89/233 (38%), Gaps = 70/233 (30%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR-KTGGYITGNIK------- 919
L G++ + G AL+G SG GK+T + D L G G +I+
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ---DIRTINVRYL 462
Query: 920 ------VSGYPKKQET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
VS QE FA T+ E++ Y E K
Sbjct: 463 REIIGVVS-----QEPVLFAT---------------TIAENIRYG----REDVTMDEIEK 498
Query: 972 M--------FIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
FI M+L P + +LVG G LS Q++R+ IA LV NP I+ +
Sbjct: 499 AVKEANAYDFI---MKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLL 550
Query: 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
DE TS LD + A+V + GRT + H+ S + A D + G
Sbjct: 551 DEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 36/217 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKKQ 927
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 928 ETFARISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPP--EIDSETRKMFIGE-VME 979
+ Q I S P + ++ E++ Y R+ EI ++ I + +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS 1156
Query: 980 LVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L P K + VG G LS Q++R+ IA LV P I+ +DE TS LD + +V
Sbjct: 1157 L----PDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + GRT + H+ S I A D + +++ G
Sbjct: 1212 EAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 9e-09
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 889 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFARISGYCEQNDIHSP 945
L+G +GAGK+ ++++AG + G + ++ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005
++VY ++ Y LR ++ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 18/176 (10%)
Query: 863 KLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 916
+ GV + GVS R G + L+G SG+GKTT++ ++AG R T G + G
Sbjct: 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+V+ P ++ R G QN +TVY+++ + + P+ + + R + E
Sbjct: 76 GKRVTDLPPQK----RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRE 128
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
++ + L+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 129 LLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
++ VS I+ G + LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGP 341
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 65/311 (20%), Positives = 99/311 (31%), Gaps = 126/311 (40%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
L ++ I G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTVVGDEMIRGI--SGGQRKRV 332
YY V + CA T +G+ +G+ SGGQ++RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIVNCFKQNIHIN---CGTAVI 379
+LA LF D +S +D+ I F+ I I
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHI---FENVIGPKGMLKNKTRI 183
Query: 380 ------SLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
S L D II++S G+I G + +L + A+FL
Sbjct: 184 LVTHSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFL 226
Query: 434 QEVTSKKDQKQ 444
+ S
Sbjct: 227 RTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPK 925
+ LNG++ + G L A++G G GK++L+ L K G++ + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG--- 66
Query: 926 KQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE 982
++ Y Q ++ ++ E++L+ +++ + V++
Sbjct: 67 ------SVA-YVPQ----QAWIQNDSLRENILFGC------QLEEP----YYRSVIQACA 105
Query: 983 LKP-LK------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L P L+ ++ +G GV+ LS Q++R+++A + +N I D+P S +DA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1036 IVMRTV--RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ V + +T + H + D + +M G
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 58/277 (20%), Positives = 100/277 (36%), Gaps = 86/277 (31%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-E 225
IL+ +S + PG + ++GP SGK+TL LAG+ D + G V + G ++ P +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTELARREKAAGIKPDP 279
R I +AF Q GV ++ + T L G +
Sbjct: 94 RAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR-----GISGGQRKRVTT 334
D + +L + ++++ G SGG++KR
Sbjct: 136 RFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR--- 172
Query: 335 GE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINCGTAVIS- 380
+ ++ P L + +DE +GLD I VN + +++
Sbjct: 173 NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVTH 222
Query: 381 ---LLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
+L Y D + +L G+IV G LV +
Sbjct: 223 YQRILD-----YIKPDYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 57/194 (29%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNIKVSG---------- 922
L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G ++ G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 923 -----------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW-----LRLPPEID 966
YP E I G V+ L +A R +D
Sbjct: 94 RAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNAVRSYRGQETLD 135
Query: 967 SETRKMFIGEVMELVELKP--LKQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ + E + L+++ L +S+ VG G G ++KR I V P + +D
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQMAVLEPELCILD 189
Query: 1024 EPTSGLDARAAAIV 1037
E SGLD A +V
Sbjct: 190 ESDSGLDIDALKVV 203
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 43/198 (21%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKKQ 927
L +S +P + A G SG GK+T+ AG I + G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 928 ETFA----RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKM-----FIG 975
+ +I G+ Q+ + T+ E+L Y E + + F+
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV- 122
Query: 976 EVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ P + + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 123 --ENM----PDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 1035 AIVMRTVRNTVDTGRTVV 1052
++V + + +++ GRT +
Sbjct: 176 SMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 81/269 (30%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSL------KVSGRV 212
+Q IL+D+S +P + GP GK+T+ SL +G +
Sbjct: 12 DDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSLLERFYQPTAGEI 59
Query: 213 TYNGHNMDEFVPE--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
T +G +D E R+ ++SQ D+ I T+RE L + G T ++ ++
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLE--GDYTDEDLW-QVLDL 115
Query: 270 EKAAG-IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI--SG 326
A ++ PD L +T VG+ RG+ SG
Sbjct: 116 AFARSFVENMPD--------------------------QL----NTEVGE---RGVKISG 142
Query: 327 GQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ----NIHINCGTAVI--- 379
GQR+R+ + L +DE + LDS + + Q ++ T VI
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMV-----QKALDSLMKGRTTLVIAHR 197
Query: 380 -SLLQPAPETYNLFDDIILLSNGQIVYQG 407
S + A D I + GQI G
Sbjct: 198 LSTIVDA-------DKIYFIEKGQITGSG 219
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 73/218 (33%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKVSGYPKK- 926
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 927 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETR 970
QE F R + E++ Y +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL-----TRTPTMEE 125
Query: 971 -----KM-----FIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
FI P + VG G LS QR+ + +A L+ P +
Sbjct: 126 ITAVAMESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRL 177
Query: 1020 IFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1056
+ +D TS LDA V R + + RTV+
Sbjct: 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
+K + + G++ L+G +GKTT L A+AG + + G++ +NG ++
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSAR-CQGVGTRYEMLTEL-----ARREKAA 273
A + + E+TV E L A++ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKK 926
+ + G+ G + L+G +GAGKTT + +AG R G I ++ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 927 QETFARISGYCEQNDIHSP-----F--VTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
I+ P F +TVYE+L+ A+ R D E K + +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 980 LV-ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L LK + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1039 RTVRNTVDTGRTV 1051
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 87/282 (30%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-E 225
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G N+ E P E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTEL-ARREKAAGIKPD 278
R + LAF Q GV + L A+ + +
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR------E 112
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR-----GISGGQRKRVT 333
+ + + L++L D + + G SGG++KR
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNE 153
Query: 334 TGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINCGTAVIS--- 380
++ ++ P A+ +DE +GLD I VN + N G VI+
Sbjct: 154 ILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQ 203
Query: 381 -LLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGF 421
+L Y D + ++ +G++V G EL LE E+ G+
Sbjct: 204 RILN-----YIQPDKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 53/193 (27%), Positives = 76/193 (39%), Gaps = 51/193 (26%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNIKVSG---------- 922
L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 923 -----------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRK 971
YP E + G VT+ L + +L E+
Sbjct: 77 RARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 972 MFIGEVMELVELKP--LKQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
+ + +EL++ L + L G G G ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1029 LDARAAAIVMRTV 1041
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 56/288 (19%), Positives = 95/288 (32%), Gaps = 118/288 (40%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTVVGDEMIRGI--SGGQRKRV 332
Y V + C + V+G+ GI SGGQR R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCFKQNIHINCGTAVI-- 379
+LA L LD T +I +C + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYNLFDDIILLSNGQIVYQGP-RELV---LEFFESM 419
L+ A D I++L G + G EL +F +
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 41/213 (19%), Positives = 88/213 (41%), Gaps = 43/213 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 933 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LK- 987
IS +C Q ++ T+ E++++ + V++ +L+ +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 988 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 858 MPQQMKLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 912
M + + +S + VL N +S + PG + ++G SG GKTTL+ LAG + G
Sbjct: 1 MTAALHIGHLSKSFQNTPVL-NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 913 YIT-GNIKVSGYPKKQETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEIDSET 969
I+ + R GY Q P +TVY ++ Y
Sbjct: 60 EISLSGKTIFSKNTNLPVRERRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQ 117
Query: 970 RKMFIGEVMELVELKPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDE 1024
R + ++EL G+ ++G LS Q++R +A L +P +I +DE
Sbjct: 118 R------IEAMLEL-------TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164
Query: 1025 PTSGLDAR 1032
P S LD +
Sbjct: 165 PFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 43/204 (21%), Positives = 69/204 (33%), Gaps = 77/204 (37%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDE---F 222
+L D+S + PG + ++G GKTTLL LAG SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+P ER Y+ Q H +TV +A+ T + +R +A
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTT 334
L++ G+ A +SGGQ++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDE 349
ALA + +DE
Sbjct: 148 -------ALARALAPDPELILLDE 164
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
LN VS G + ++G SGAGK+TL+ + R T G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 932 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R G Q N + S TV+ ++ P E+D+ + V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLSL----- 150
Query: 989 SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 --VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 46/183 (25%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNIKVS 921
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 922 GYPKKQET---FARISGYCEQNDIHSPFVTVYESLLYSAWLRL----PPEIDSETRKMFI 974
P+ ++ F Q P +T +E++ + L EI
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVE---- 122
Query: 975 GEVMELVELKPL-----KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
EV +++++ + ++ LS Q++R+ +A LV +PS++ +DEP S L
Sbjct: 123 -EVAKILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1030 DAR 1032
DAR
Sbjct: 172 DAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 56/194 (28%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L +V+ I+ G +LGP +GKTT + +AG S +G + ++ D V
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFD----DRLVAS 71
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
+ D IG +T E +AF +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
+I ++ +A K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDE 349
+V L +DE
Sbjct: 153 RALVKDPSLLLLDE 166
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 122/281 (43%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTVVGDEMIRGI--SGGQRKRV 332
Y V + C + V+G+ GI SGGQR R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIVNCFKQNIHINCG------- 375
+LA L LD T +I F+ + C
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEI---FESCV---CKLMANKTR 212
Query: 376 ---TAVISLLQPAPETYNLFDDIILLSNGQIVYQGP-RELV 412
T+ + L+ A D I++L G + G EL
Sbjct: 213 ILVTSKMEHLKKA-------DKILILHEGSSYFYGTFSELQ 246
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 42/213 (19%), Positives = 90/213 (42%), Gaps = 44/213 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 933 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LK- 987
IS +C Q + ++ T+ E+++ ++ D V++ +L+ +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 988 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 33/202 (16%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIKVSGYPKK 926
+L +S + PG L+G +G+GK+TL+ T G I +
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITL- 89
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLR--LPP---EIDSETRKMFIGEVMELV 981
++ V + ++S R L P D E I +V + V
Sbjct: 90 EQWRKAFG------------VIPQKVFIFSGTFRKNLDPNAAHSDQE-----IWKVADEV 132
Query: 982 ELKPLKQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L+ + + G + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQ 1057
I+ RT++ TV+ +
Sbjct: 193 IIRRTLKQAF-ADCTVILCEAR 213
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 53/190 (27%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKV 920
+K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 353 GKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICL 402
Query: 921 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTRE---- 448
Query: 973 FIGEV---------MELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
++ ME +E P +++G G S LS QR+R+ IA L+ + ++ +
Sbjct: 449 ---QIEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLIL 504
Query: 1023 DEPTSGLDAR 1032
DE TS LD
Sbjct: 505 DEATSALDTE 514
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 67/197 (34%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKV 920
+D++ +L ++ + G A +G+SG GK+TL+ DV +G+ I +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILI 400
Query: 921 SGYPKK---------------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEI 965
G+ K Q+ S TV E++L P
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLGR-----PTA 442
Query: 966 DSETRKMFIGEVMELVEL-------KPLKQ---SLVGLPGVSGLSTEQRKRLTIAVELVA 1015
E EV+E ++ L Q + VG GV LS Q++RL+IA +
Sbjct: 443 TDE-------EVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLN 494
Query: 1016 NPSIIFMDEPTSGLDAR 1032
NP I+ +DE TS LD
Sbjct: 495 NPPILILDEATSALDLE 511
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 999 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1053 CTIHQPSIDIFEAFDELF-LMKRGGY 1077
H ++ +A D + + G
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGS 332
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 53/190 (27%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNIKV 920
+ L ++ G AL+G SG+GK+T+ D+ G I +
Sbjct: 353 GREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILM 402
Query: 921 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
G+ ++ T A Q ND TV ++ Y+ E E
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND------TVANNIAYAR----TEEYSRE---- 448
Query: 973 FIGEV---------MELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
++ M+ + +++G GV LS QR+R+ IA L+ + I+ +
Sbjct: 449 ---QIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILIL 504
Query: 1023 DEPTSGLDAR 1032
DE TS LD
Sbjct: 505 DEATSALDTE 514
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 35/182 (19%)
Query: 863 KLQGVS---DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 916
+++ +S + L+ +S G ++G +GAGKT ++++AG G I
Sbjct: 3 EIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
V+ ++ + QN P + V ++L + +R+ +K+ +
Sbjct: 61 GKDVTDLSPEK----HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPK 106
Query: 977 -VMELVELKPLKQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V++ + + + LS +++R+ +A LV NP I+ +DEP S LD
Sbjct: 107 RVLDTARD-------LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 1031 AR 1032
R
Sbjct: 160 PR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L ++S ++ G ++LGP +GKT L +AG SGR+ +G ++ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
A++ Q H M V++ L F R + + ++
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI----------KDPKRVL----- 109
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMM 338
+ + L ++ + D +SGG+++RV
Sbjct: 110 ---------------DT-------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 38/185 (20%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKK 926
LN ++ + G AL+G SG+GK+TL+ +AG + T G I V+ P K
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL----PPEIDSETRKMFIGEVMELVE 982
+ QN P +TVY+++ + L L EID + R EV +++
Sbjct: 74 DRNVGLVF----QNWALYPHMTVYKNIAFP--LELRKAPREEIDKKVR-----EVAKMLH 122
Query: 983 LKPL-----KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA 1035
+ L Q LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 123 IDKLLNRYPWQ----------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE- 171
Query: 1036 IVMRT 1040
+R
Sbjct: 172 --VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP- 224
T L +++ IK G LLGP SGK+TLL +AG + SG++ ++ ++ E P
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI----RGISGGQRKRVTT 334
+ID ++ +A K+L + D+++ +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 335 GEMMVGPALALFMDE 349
+V L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 36/194 (18%)
Query: 861 QMKLQGV--SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT- 915
+++ + K+ ++GVS + G AL+G SG GKTT + +LAG + T G I
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
Query: 916 GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL----PPEIDSETRK 971
++ V+ P K + QN P +TV+E++ + LR E++ +
Sbjct: 63 DDVLVNDIPPKYREVGMVF----QNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVE 116
Query: 972 MFIGEVMELVEL---KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
I + + L KP Q LS Q++R+ +A LV P ++ DEP S
Sbjct: 117 --IARKLLIDNLLDRKP-TQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSN 163
Query: 1029 LDA--RAAAIVMRT 1040
LDA R MR
Sbjct: 164 LDANLRMI---MRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 47/193 (24%), Positives = 68/193 (35%), Gaps = 57/193 (29%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
+ + VS +K G LLGP GKTT LL LAG + SG + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 225 -ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIK 276
R + Q H MTV E +AF R + + E+ +R + A
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRISK-----DEVEKRVVEIARKL 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE 336
ID + D L SGGQ++RV
Sbjct: 122 ---LIDNLL--------------DRKPTQL------------------SGGQQQRVALAR 146
Query: 337 MMVGPALALFMDE 349
+V L DE
Sbjct: 147 ALVKQPKVLLFDE 159
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1064
RL +++ L S++ +DEPT LD ++ + + V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE----- 124
Query: 1065 AFDELFLMKRGGYEIYVGPLG 1085
L + I +
Sbjct: 125 ------LKDAADHVIRISLEN 139
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 890 LMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFARISGYCEQNDIHSPF 946
L+G SG GKTT + ++AG T G I G+ V+ P K + + Q+ P
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF----QSYAVWPH 97
Query: 947 VTVYESLLYSAWLRL----PPEIDSETRKMFIGEVMELVELKPL-----KQSLVGLPGVS 997
+TVYE++ + L++ EID + EL++++ L Q
Sbjct: 98 MTVYENIAFP--LKIKKFPKDEIDKR-----VRWAAELLQIEELLNRYPAQ--------- 141
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1040
LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 142 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1433 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-19 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-20 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-04 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 2e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 3e-28
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSG 922
+ ++ + L V+ + G ++MG SG+GK+T+++++ + T G + NIK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 923 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL 980
+ T R G+ Q P +T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
EL ++ P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1041 VRNTVD-TGRTVVCTIHQPSIDIFEA--FDELFLMKRG 1075
++ + G+TVV H DI A + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH----DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.2 bits (216), Expect = 1e-19
Identities = 44/257 (17%), Positives = 92/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
++ + LK+V+ IK G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPERTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
++ + ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKR 331
A E + + + + +SGGQ++R
Sbjct: 125 AL--------------------ECLKMAELEERFA-----------NHKPNQLSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL 391
V + + D+ + LDS T +I+ K+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSNGQIVYQGP 408
+ II L +G++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (282), Expect = 4e-28
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 8/208 (3%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L+GVS + G +T ++G +G+GK+TL++V+ G + G + K + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
Q +TV E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 993 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.7 bits (235), Expect = 5e-22
Identities = 56/254 (22%), Positives = 89/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + ++ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVG 340
E L+ L L D G+ +SGGQ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400
+ MDE G+ I N + G + + N D + ++ N
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (274), Expect = 3e-27
Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 17/214 (7%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYP 924
V + + G+ G + L+G +GAGKTT + +AG R G I N +
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 925 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
+ P +TVYE+L+ A+ R E + LK
Sbjct: 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW---IFSLFPRLK 130
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ L G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 131 ERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 1045 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G T++ + A ++++ G
Sbjct: 186 NQEGTTILLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 78.4 bits (193), Expect = 2e-16
Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHNMDEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
A + + E+TV E L A + + E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWI----------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
+ L + G +SGG+++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L MDE S GL ++ ++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (266), Expect = 4e-26
Identities = 55/270 (20%), Positives = 96/270 (35%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
T + ++ IK G +LLGP GKTT L +AG + + GR+ + ++ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
E + + ++L ++ + +SGGQR+RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L MDE + LD+ + K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (266), Expect = 4e-26
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 863 KLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI 918
KL+ ++ +N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 8 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 67
Query: 919 KVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
+ Y ++ R Q+ P +TVYE++ + ++ + + +
Sbjct: 68 RDVTYLPPKD---RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAA 121
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
EL++++ L + LS QR+R+ +A +V P ++ MDEP S LDA+ +
Sbjct: 122 ELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 1039 RTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
++ T + H D EA D + +M RG
Sbjct: 177 AEIKKLQQKLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99.2 bits (247), Expect = 4e-24
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926
V DK VL ++ G + G +G GKTTL+ ++ + G I +G P
Sbjct: 10 VGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT 66
Query: 927 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL 986
+ + + I ++V + L A L K I + +E VE+ L
Sbjct: 67 K--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDL 119
Query: 987 KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
K+ + LS +R+ +A L+ N I +D+P +D + V++++ +
Sbjct: 120 KKK------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 173
Query: 1046 DTGRTVVCTIHQPSI 1060
+ G ++ + + S
Sbjct: 174 EKGIVIISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.6 bits (183), Expect = 2e-15
Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVIS 380
+D+ +D + +++ + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (251), Expect = 5e-24
Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 27/218 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L GVS R G + +++G SG+GK+T + + + + G I ++ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 932 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL 980
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 88.7 bits (220), Expect = 7e-20
Identities = 55/286 (19%), Positives = 100/286 (34%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
+LK VS + G + ++G SGK+T L + S G + NG N++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ + QH N MTV E + + + L++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI------QVLGLSKHDA 125
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328
RE+A YL +G+D A + +SGGQ
Sbjct: 126 RERA---------------------------LKYLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ +Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEEGKTMVVVTHEMGFA 212
Query: 389 YNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
++ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (249), Expect = 6e-24
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQ 927
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
++ Y + + E L + A S + + E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 91.6 bits (227), Expect = 4e-21
Identities = 58/276 (21%), Positives = 96/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G N+ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
E + +Y+ + M E L F A +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
E + + ++ GL + + S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKI-----KDRVSTYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
+DE ++GLD ++ KQ T ++S E L D I L+ NG
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99 bits (249), Expect = 6e-24
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 14/215 (6%)
Query: 866 GVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSG 922
+ LN VS G + ++G SGAGK+TL+ + R T G + +++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 923 YPKKQETFARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV 981
+ + T AR G Q+ TV+ ++ L P+ + + R + E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLV 128
Query: 982 ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L S S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1042 RNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
++ G T++ H+ + + D + ++ G
Sbjct: 184 KDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 50/280 (17%), Positives = 90/280 (32%), Gaps = 57/280 (20%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
+ + L +VS + G++ ++G +GK+TL+ + + G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRV 332
L ++GL D +SGGQ++RV
Sbjct: 122 ---------------------------TELLSLVGLGDKH-----DSYPSNLSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLF 392
+ L DE ++ LD +TT I+ K I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKD-INRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++SNG+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 7e-24
Identities = 35/203 (17%), Positives = 79/203 (38%), Gaps = 23/203 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L ++ G + A+ G +G+GKT+L+ ++ G + G I + +V
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV------------ 99
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
+C Q P T+ E++++ E ++ ++ + +++G
Sbjct: 100 --SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 154 -EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 1053 CTIHQPSIDIFEAFDELFLMKRG 1075
+ D++ ++ +G
Sbjct: 213 LVTSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.6 bits (235), Expect = 1e-21
Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 53/246 (21%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
+LK+++ I+ G + + G SGKT+LL+ + G+L++S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F KA ++
Sbjct: 99 -VSFCSQ-FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
+ +TV+G E +SGGQR R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL 411
G EL
Sbjct: 239 GTFSEL 244
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 99.1 bits (247), Expect = 2e-23
Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 43/250 (17%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER 226
ILKD++ I+ G +G GK+TL+ + D + SG++ +GHN+ +F+
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
I Q DN + TV+E + G E+ K A
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------ 136
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
++ L DT VG E +SGGQ++R++ + +
Sbjct: 137 --------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404
L +DE ++ LD + I + + T +++ T D I+++ NG IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV-LSKDRTTLIVA---HRLSTITHADKIVVIENGHIV 231
Query: 405 YQGPRELVLE 414
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 93.3 bits (232), Expect = 2e-21
Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 16/222 (7%)
Query: 861 QMKLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 914
++ + VS D++ +L ++ + G A +G+SG GK+TL++++ T G I
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 915 T-GNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
+ + R Q D TV E++L E+ +
Sbjct: 76 LIDGHNIKDFLTG---SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMA- 131
Query: 974 IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+ + P LS Q++RL+IA + NP I+ +DE TS LD +
Sbjct: 132 --NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+I+ + + RT + H+ S D++ +++ G
Sbjct: 190 ESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 4e-23
Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 17/221 (7%)
Query: 863 KLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 918
+ + V+ ++ L ++ G AL+G SG+GK+T+ ++ G+I
Sbjct: 15 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHI 72
Query: 919 KVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIG 975
+ G+ ++ + QN +I+ R
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA--- 129
Query: 976 EVMELVELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
M+ + +++G G LS QR+R+ IA L+ + I+ +DE TS LD +
Sbjct: 130 YAMDFINKMDNGLDTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + + RT + H+ S E DE+ +++ G
Sbjct: 189 RAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.7 bits (212), Expect = 7e-19
Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 44/252 (17%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
L++++ I G+ L+G SGK+T+ + D G + +GH++ E+
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +SQ+ + + T ++ + A
Sbjct: 86 SLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF---- 134
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ +D DT++G E +SGGQR+R+ ++ +
Sbjct: 135 ----------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDS 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
L +DE ++ LD+ + I + + N + VI+ T D+I+++ +G
Sbjct: 172 PILILDEATSALDTESERAIQAALDE-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGI 227
Query: 403 IVYQGPRELVLE 414
IV +G +L
Sbjct: 228 IVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.8 bits (238), Expect = 2e-22
Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 27/223 (12%)
Query: 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNIK 919
M+LQ V+ + L +SG R G + L+G +GAGK+TL+ +AG G I
Sbjct: 4 MQLQDVA--ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQP 61
Query: 920 VSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
+ + + A Y Q V+ L + TR + +V
Sbjct: 62 LEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAG 111
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDAR 1032
+ L LS + +R+ +A ++ ++ +DEP + LD
Sbjct: 112 ALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + + + G +V + H + +L+K G
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (198), Expect = 3e-17
Identities = 48/259 (18%), Positives = 80/259 (30%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395
L +DE LD + + G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSNGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 7e-22
Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 16/220 (7%)
Query: 863 KLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 918
+ + D V+L+ ++ + + G + ++G SG+GK+TL ++ +
Sbjct: 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--V 60
Query: 919 KVSGYP---KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIG 975
+ G+ R G Q D ++ +++ + ++ +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA--- 116
Query: 976 EVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ + + + +GLS QR+R+ IA LV NP I+ DE TS LD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
++MR + + GRTV+ H+ S + D + +M++G
Sbjct: 177 VIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 79.2 bits (195), Expect = 8e-17
Identities = 53/251 (21%), Positives = 93/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE- 225
IL +++ IK G + ++G SGK+TL + +G+V +GH++ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ + V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
+ + E G+SGGQR+R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L DE ++ LD + I+ + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 43/259 (16%)
Query: 159 PSRKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHN 218
P+R +L+ ++ ++PG +T L+GP SGK+T+ L + G++ +G
Sbjct: 22 PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKP 77
Query: 219 MDEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
+ ++ R A + Q + + +++E +A+ G+
Sbjct: 78 LPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GL 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTG 335
P ++ A G + GL DT V + + +SGGQR+ V
Sbjct: 113 TQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALA 163
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395
++ L +D+ ++ LD+++ Q+ ++ + ++ D I
Sbjct: 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHI 221
Query: 396 ILLSNGQIVYQGPRELVLE 414
+ L G I G + ++E
Sbjct: 222 LFLEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (221), Expect = 4e-20
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
L G++ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R Q ++ E++ Y L P ++ T + P
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1050
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
V+ S + E D + ++ G
Sbjct: 205 VLLITQHLS--LVEQADHILFLEGG 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 863 KLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKV 920
+LQ V+ ++V+ ++ G +G SG GK+TL+ ++AG +T + +
Sbjct: 2 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFI 59
Query: 921 SGYPKKQETFARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
A G Q+ P ++V E++ + L + R + +V E
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAE 116
Query: 980 LVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+++L L LS QR+R+ I LVA PS+ +DEP S LDA +
Sbjct: 117 VLQLAHLLDRK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 1040 TVRNTV-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ GRT++ H D EA D++ ++ G
Sbjct: 172 EISRLHKRLGRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.8 bits (207), Expect = 2e-18
Identities = 55/271 (20%), Positives = 96/271 (35%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV 223
+ + KD++ I G + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPA 342
+ +VL L D + +SGGQR+RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
+DE + LD++ Q+ +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.1 bits (213), Expect = 3e-19
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 21/215 (9%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQ 927
++ + +S + G L+G SG GKTT + ++AG + G I K+ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 928 ETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
Q+ P +TVY+++ + LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1045 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 79.2 bits (195), Expect = 8e-17
Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV 223
+T ++++S +K G +LLGP GKTT L +AG + S G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGE 336
++LGL + R +SGGQR+RV G
Sbjct: 121 -----------------------REVAELLGLTELLN-----RKPRELSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
+V MDE + LD+ ++ + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+++ G + G + E ++ P VA F+
Sbjct: 212 VMNRGVLQQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.1 bits (213), Expect = 4e-19
Identities = 54/251 (21%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE 225
IL+D+S +P + GP GK+T+ L + +G +T +G +D E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL 343
+T VG E ISGGQR+R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403
L +DE + LDS + + + T VI+ T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS-LMKGRTTLVIA---HRLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 85.7 bits (212), Expect = 5e-19
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPK 925
DD +L +S +P + A G SG GK+T+ +L + T G IT +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP 985
+ + G+ Q+ T+ E+L Y E + + VE P
Sbjct: 72 EN--WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMP 126
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ + +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
GRT + H+ S D+++ +++G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.4 bits (208), Expect = 2e-18
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 18/222 (8%)
Query: 863 KLQGVS----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITG 916
++ VS K+V L+ V+ G ++G SGAGKTT M ++AG + G +
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 917 NIKVSGYPKKQET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFI 974
+ ++ K R G Q P +T +E++ + ++ E + +
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRV 121
Query: 975 GEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
EV +++++ + LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1035 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
V+ G T++ H P+ DIF D + ++ +G
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.4 bits (203), Expect = 8e-18
Identities = 47/279 (16%), Positives = 97/279 (34%), Gaps = 57/279 (20%)
Query: 161 RKQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMD 220
+K + L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
R + Q +T E +AF +++ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTT 334
+ K+L + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDD 394
+V L +DE + LD+ + + G ++ + + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
Query: 395 IILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ +L G++V G E + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.4 bits (203), Expect = 6e-18
Identities = 54/267 (20%), Positives = 100/267 (37%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER- 226
L ++S ++ G ++LGP +GKT L +AG SGR+ +G ++ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
A++ Q+ + M V++ L F R + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRVLDT----------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALF 346
+ L ++ D +SGG+++RV +V L
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQ 406
+DE + LD T + +H V+ + E + D I ++ +G+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 16/203 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG-YPKKQETFARI 933
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGL 993
+ QN P + V ++L + +R+ D + V++ ++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEF--GMRMKKIKDPK-------RVLDTARDLKIEHLLDRN 124
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1053 CTIHQPSIDIFEAFDELFLMKRG 1075
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 2e-14
Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 56/265 (21%)
Query: 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTA- 228
+V +LLGP +GK+ L +AG + G V NG ++ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
++ Q ++V +A+ R R + E+A + A +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------ 120
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMD 348
D +SGG+R+RV +V L +D
Sbjct: 121 -----------------------------DRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408
E + +D T ++ + + ++ + E L D++ ++ NG+IV +G
Sbjct: 152 EPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.0 bits (163), Expect = 1e-12
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFARISGYCEQN 940
L+G +GAGK+ ++++AG + G + ++ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000
P ++VY ++ Y E D R E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVR-----EMAEKLGIAHLLDRK-----PARLS 128
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1059
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1060 IDIFEAFDELFLMKRG 1075
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 22/201 (10%), Positives = 44/201 (21%), Gaps = 42/201 (20%)
Query: 889 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSP 945
+ G G GKTTL+ + ++ G+ T ++ K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 946 FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1065
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1066 FDELFLMKRGGYEIYVGPLGR 1086
E+ + I + P R
Sbjct: 146 VKEIRRLPGAVL-IELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.6 bits (91), Expect = 9e-04
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 5/104 (4%)
Query: 182 LLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.9 bits (103), Expect = 1e-04
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 14/139 (10%)
Query: 79 QERQRLINKLVTVPEVDNEKFLLKLKN--RIERVGIDLPKVEVRYEHLNIEAEAYIASKA 136
++++ + N KN I + +D + R + L + E + ++
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LPSFTK----FYTSIFEGFLNYLHILPSRKQHL--------TILKDVSGIIKPGRLTLLL 184
+ F ++ ++ + L LK + I R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPASGKTTLLLALAGKLD 203
GP SGKTTL AL
Sbjct: 161 GPIDSGKTTLAAALLELCG 179
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 7/186 (3%)
Query: 172 SGIIKPGRLTLLLGPPASGKTTLLL--ALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAA 229
G I+ G +T + G +GKT + A+ +L F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ ++ A + + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEANVITDY-----YLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
G+ + L L + V+ ++++ + G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.4 bits (98), Expect = 4e-04
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 19/143 (13%)
Query: 939 QNDIHSPFVTVYESLL-----------YSAWLRLPPEIDSETRKMFIGEVMELVELKPLK 987
+ + +Y L +A L + E + + L K ++
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1048 GRTVVCTIHQPSIDIFEAFDELF 1070
+ + +FE D L
Sbjct: 386 DLQFIVISLKN--TMFEKSDALV 406
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 3/137 (2%)
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L + R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A E+ + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDVCADTVVGDEMI 321
L +D V D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 0.002
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 171 VSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAY 230
+ ++ G + L+ P +GK+ L L LA ++ + + E
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 231 ISQHDNHIGE 240
I + +G
Sbjct: 82 IHHRLHALGA 91
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 8/183 (4%)
Query: 172 SGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVS---GRVTYNGHNMDEFVPERTA 228
G ++ G +T L G +GK+ L LA L + G+ Y F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
+ + + A + + ++ + + I D + +Y
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 146
Query: 289 ATEGQEANVITDYYLKVLGLDVCAD----TVVGDEMIRGISGGQRKRVTTGEMMVGPALA 344
+ G+ + + L AD VV + G + G +
Sbjct: 147 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIM 206
Query: 345 LFM 347
Sbjct: 207 AHS 209
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 0.004
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 179 RLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI 238
+L ++ GP GK+T LA +LD+S + G + + P + ++ +I
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 239 GEM 241
++
Sbjct: 63 TDL 65
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1433 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.47 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.15 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.79 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.89 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.73 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.69 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.6 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.51 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.42 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.38 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.33 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.24 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.22 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.03 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.01 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.87 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.83 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.82 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.81 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.81 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.74 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.72 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.7 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.59 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.58 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.56 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.55 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.53 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.52 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.5 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.5 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.48 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.45 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.43 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.41 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.34 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.31 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.28 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.22 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.19 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.19 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.18 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.18 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.17 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.17 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.1 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.04 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.03 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.01 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.01 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.99 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.99 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.98 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.98 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.98 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.98 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.97 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.96 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.92 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.85 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.85 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.84 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.83 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.82 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.81 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.8 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.78 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.78 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.75 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.73 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.71 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.69 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.67 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.65 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.65 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.64 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.63 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.61 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.61 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.6 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.59 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.58 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.55 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.55 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.53 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.53 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.52 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.52 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.52 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.45 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.43 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.38 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.37 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.37 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.35 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.34 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.34 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.34 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.33 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.33 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.32 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.32 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.3 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.29 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.29 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.28 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.22 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.22 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.21 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.18 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.15 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.07 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.07 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.07 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.05 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.03 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.98 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.94 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.92 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.89 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.86 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.82 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.79 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.79 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.75 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.71 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.6 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.59 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.57 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.54 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.51 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.5 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.48 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.47 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.46 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.46 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.46 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.44 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.43 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.43 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.42 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.4 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.38 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.34 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.31 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.29 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.26 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.25 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.23 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.22 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.22 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.19 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.18 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.16 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.16 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.09 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.07 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.05 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.02 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.01 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.01 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.99 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.94 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.93 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.9 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.86 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.86 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.86 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.85 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.83 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.81 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.78 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.78 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.75 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.74 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.74 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.59 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.56 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.49 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.46 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.45 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.39 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.36 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.32 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.28 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.2 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.2 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.14 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.12 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.08 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.08 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.06 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.04 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.02 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.01 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.99 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.82 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.78 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.66 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.62 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.61 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.57 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.53 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.5 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.5 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.44 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.44 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.41 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.38 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.33 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.32 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.32 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.13 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.11 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.03 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.98 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.97 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.96 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.94 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.92 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.91 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.91 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.84 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 91.83 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.83 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.8 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.77 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.73 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.73 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.69 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.68 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.62 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.62 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.59 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.51 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.51 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.5 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.49 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.48 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.43 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.36 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.36 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.34 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.24 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.19 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.16 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.14 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.13 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.13 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.12 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.06 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.05 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.04 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.03 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.01 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.97 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.95 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.91 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.88 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.82 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.8 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.69 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.67 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.66 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.58 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.56 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.45 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.38 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.31 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.24 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.22 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.09 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.08 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.89 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.85 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.84 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.8 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.7 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.62 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.58 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.48 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.29 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.15 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.03 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.87 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.87 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.57 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.5 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.39 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.29 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.13 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.98 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.98 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.91 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.9 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.73 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.73 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.58 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.56 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.52 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.37 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.12 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.09 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.08 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.7 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.5 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.32 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.17 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.93 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.14 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.88 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.82 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.75 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.73 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.58 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.4 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.31 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 84.12 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.53 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.2 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.15 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.84 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.6 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.55 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.43 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.97 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.46 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.37 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=330.82 Aligned_cols=207 Identities=25% Similarity=0.343 Sum_probs=156.9
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCH
Q ss_conf 3131160679948739999869999489999999479999997211999978507997765-329996379988899999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 243 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+++...+. |.++||+|+..+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999866720787325676999999886199999886899999751234578999999999099543453334644556
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~g 323 (1433)
+||+.|+++.++... .+.+.+++++++.+||++.+|.. +..
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRY-----PAQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSC-----TTT
T ss_pred HHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHCCC-----HHH
T ss_conf 999999998739999----------------------------------99999999999875985566099-----546
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 77556668999999823985443225987999998999999999988813982899994594479820591999749729
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 lSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~i 403 (1433)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.++++.... +.+++.++|...++..++|+|++|++|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999889999766404998243068866689899989999999998731-98079994899999986999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 98539877999
Q 000540 404 VYQGPRELVLE 414 (1433)
Q Consensus 404 vy~G~~~~~~~ 414 (1433)
+++|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
T ss_conf 99859999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=332.53 Aligned_cols=207 Identities=25% Similarity=0.368 Sum_probs=160.8
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 313116067994873999986999948999999947999999721199997850799776-5329996379988899999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1433)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+..+ +|.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999866720787325676999999886199999886899999751234578999999999099543453334644556
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG 323 (1433)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~g 323 (1433)
+||+.|+.++++... .+.+.+++.+++.++|++.+|..+ ..
T Consensus 90 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 130 (232)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHCCH-----HH
T ss_conf 889789998759988----------------------------------999999999997578865664896-----56
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 77556668999999823985443225987999998999999999988813982899994594479820591999749729
Q 000540 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQI 403 (1433)
Q Consensus 324 lSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~i 403 (1433)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.++++.+.. +++++.++|...++..++|++++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999999999999703998899758887889889989999999998742-98799994899999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 98539877999
Q 000540 404 VYQGPRELVLE 414 (1433)
Q Consensus 404 vy~G~~~~~~~ 414 (1433)
+++|+++++++
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=327.08 Aligned_cols=205 Identities=27% Similarity=0.359 Sum_probs=103.1
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-------CCEEEEECCCCCCC
Q ss_conf 13116067994873999986999948999999947999999721199997850799776-------53299963799888
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNHI 238 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1433)
.+|+|||+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 17 ~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~ 93 (240)
T d1g2912 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHC
T ss_conf 9985606688699899999999980999999996487889---8989999998035664442453225512002212223
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999998667207873256769999998861999998868999997512345789999999990995434533346
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~ 318 (1433)
+.+||+||+.|+.+.++... .+.+.+++++++.+||++.+|..+
T Consensus 94 ~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p-- 137 (240)
T d1g2912 94 PHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP-- 137 (240)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG--
T ss_pred CHHHHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHCCCH--
T ss_conf 10116676330687729998----------------------------------999999999998759966762993--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 44556775566689999998239854432259879999989999999999888139828999945944798205919997
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL 398 (1433)
+.|||||||||+||++|+.+|+++++||||+|||+.++.+|++.++++.+.. +++++.++|...++..++|+|++|
T Consensus 138 ---~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~vm 213 (240)
T d1g2912 138 ---RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAVM 213 (240)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEE
T ss_pred ---HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEE
T ss_conf ---3499999999999999826998898258876569899989999999998636-988999959999999969999999
Q ss_pred CCCEEEEECCHHHHH
Q ss_conf 497299853987799
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~ivy~G~~~~~~ 413 (1433)
.+|++++.|++++++
T Consensus 214 ~~G~iv~~G~~~el~ 228 (240)
T d1g2912 214 NRGVLQQVGSPDEVY 228 (240)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
T ss_conf 899999985999998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.25 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=140.5
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+++|++.++... .....+|+|||+.+++||.++|+||||||||||+++|+|..+. .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred C------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1------1223347896048888999888899999887119999999899999999999929965322324698887789
Q 000540 927 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000 (1433)
Q Consensus 927 ~------~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 1000 (1433)
. ..+++.+|||+|+..++|.+||+|++.|...++. .+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 98888999999996199768982999999999899999999998728-99899994584389997408899992694999
Q 000540 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEI 1079 (1433)
Q Consensus 1001 gGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~v 1079 (1433)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++. ++...+|++++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCC
Q ss_conf 97899
Q 000540 1080 YVGPL 1084 (1433)
Q Consensus 1080 y~G~~ 1084 (1433)
+.|+.
T Consensus 221 ~~G~~ 225 (240)
T d3dhwc1 221 EQDTV 225 (240)
T ss_dssp EEEET
T ss_pred EECCH
T ss_conf 98799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=320.29 Aligned_cols=214 Identities=25% Similarity=0.341 Sum_probs=189.4
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|.... .+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 189986999989-------------99998560668869989999999998099999999648788--989899999980
Q ss_pred CCC-------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 611-------2233478960488889998888999998871199999998999999999999299653223246988877
Q 000540 926 KQE-------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSG 998 (1433)
Q Consensus 926 ~~~-------~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~g 998 (1433)
... ..+|.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8998888999999996199768982999999999899999999998728-998999945843899974088999926949
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 lSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~ 1077 (1433)
||||||||++||++|+.+|++|+|||||+|||+.+...+++.++++.+. |.|||+++|++. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9997899
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~vy~G~~ 1084 (1433)
++..|+.
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=325.67 Aligned_cols=203 Identities=23% Similarity=0.340 Sum_probs=176.4
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 131160679948739999869999489999999479999997211999978507997765-3299963799888999999
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVr 244 (1433)
.+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++++..++ +.++||+|+..+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998667207873256769999998861999998868999997512345789999999990995434533346445567
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~gl 324 (1433)
||+.|+.+.++... ..+++.+++.++|.+.+|..+ ..|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGS
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCH-----HHC
T ss_conf 88888776405538-------------------------------------999999999825655575895-----547
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 75566689999998239854432259879999989999999999888139828999945944798205919997497299
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~iv 404 (1433)
||||||||+|||+|+.+|++|+|||||+|||+.+..++++.++++... .+.+++.++|...++.+++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 999840140304344367714434787679989999999999999864-7968999749999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 8539877999
Q 000540 405 YQGPRELVLE 414 (1433)
Q Consensus 405 y~G~~~~~~~ 414 (1433)
++|+++++++
T Consensus 208 ~~g~~~el~~ 217 (229)
T d3d31a2 208 QVGKPEEIFE 217 (229)
T ss_dssp EEECHHHHHS
T ss_pred EECCHHHHHH
T ss_conf 9869999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=323.59 Aligned_cols=214 Identities=22% Similarity=0.345 Sum_probs=190.1
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+++|++.++. ...+|+|||+.+++||.++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 499987999999-------------99998130678879989999999998299999999758999--878799916413
Q ss_pred CC-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 61-12233478960488889998888999998871199999998999999999999299653223246988877899888
Q 000540 926 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1433)
.. ...+|.+|||+|+..++|.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 8999999996199768982999999999899999999998728-998999945843899974088999926949999789
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1005 kRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~ 1083 (1433)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. +..+.+|++++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000540 1084 L 1084 (1433)
Q Consensus 1084 ~ 1084 (1433)
.
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=327.04 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=116.4
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC-----C-CCEEEEECCCCCCC
Q ss_conf 31311606799487399998699994899999994799999972119999785079977-----6-53299963799888
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFV-----P-ERTAAYISQHDNHI 238 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-----~-~~~~~yv~Q~d~~~ 238 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... . ++.++||+|+..++
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~ 94 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCC
T ss_conf 89980407898799899999899980999999997586888---745999999951373111531204514773043346
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999998667207873256769999998861999998868999997512345789999999990995434533346
Q 000540 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGD 318 (1433)
Q Consensus 239 ~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~ 318 (1433)
|.+||+||+.|+.+..+... .+.+.+++++++.+||++.+|..+
T Consensus 95 p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p-- 138 (242)
T d1oxxk2 95 PNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP-- 138 (242)
T ss_dssp TTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG--
T ss_pred CCCCHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHCCHHHHHHCCH--
T ss_conf 66657777665567613799----------------------------------999999999986659176664895--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 44556775566689999998239854432259879999989999999999888139828999945944798205919997
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL 398 (1433)
..|||||||||+|||+|+.+|+++++||||+|||+.++.++++.++++.... +.+++.++|...++.+++|+|++|
T Consensus 139 ---~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~vm 214 (242)
T d1oxxk2 139 ---RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVL 214 (242)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEE
T ss_pred ---HHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHCCEEEEE
T ss_conf ---4599999858998757760466145447866799899889989999998635-987999979999999969999999
Q ss_pred CCCEEEEECCHHHHH
Q ss_conf 497299853987799
Q 000540 399 SNGQIVYQGPRELVL 413 (1433)
Q Consensus 399 ~~G~ivy~G~~~~~~ 413 (1433)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 215 VKGKLVQVGKPEDLY 229 (242)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
T ss_conf 899999986999998
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=325.33 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=187.4
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+++|+++++. ...+|+|||+.+++||.++|+||||||||||+++|+|.... .+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 99999999989-------------99998111778869989999989998299999999658788--8888999999778
Q ss_pred CC-CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22334789604888899988889999988711999999989999999999992996532232469888778998888
Q 000540 927 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1433)
.. ..+|.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999619976898299999999989999999999872-89989999458438999740889999269499997899
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. +..+.+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=316.93 Aligned_cols=219 Identities=22% Similarity=0.359 Sum_probs=180.7
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+++|++.+++.. .....+|+|||+.+++||.+||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred CC---C---C-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 11---2---2-3347896048888999888899999887119999999899999999999929965-3223246988877
Q 000540 927 QE---T---F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-LKQSLVGLPGVSG 998 (1433)
Q Consensus 927 ~~---~---~-~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~g 998 (1433)
.. . + ++.+|||+|+..+.|.+||+|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8998888999999996199768982999999999899999999998728-998999945843899974088999926949
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 lSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~ 1077 (1433)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++. +.+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9997899
Q 000540 1078 EIYVGPL 1084 (1433)
Q Consensus 1078 ~vy~G~~ 1084 (1433)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=319.68 Aligned_cols=216 Identities=26% Similarity=0.373 Sum_probs=189.4
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+.+|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 8999757999889-----------998998040789879989999989998099999999758688--874599999995
Q ss_pred CC------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 61------122334789604888899988889999988711999999989999999999992996532232469888778
Q 000540 926 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGL 999 (1433)
Q Consensus 926 ~~------~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gl 999 (1433)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEE
Q ss_conf 998888999999996199768982999999999899999999998728-9989999458438999740889999269499
Q 000540 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078 (1433)
Q Consensus 1000 SgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~ 1078 (1433)
|||||||++||++|+.+|++|++||||+|||+.+...+++.++++.+. |.|+|+++|++. ++.+.+|++++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 997899
Q 000540 1079 IYVGPL 1084 (1433)
Q Consensus 1079 vy~G~~ 1084 (1433)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=316.89 Aligned_cols=208 Identities=23% Similarity=0.320 Sum_probs=183.2
Q ss_pred CCCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC------CEEEEECCCCC
Q ss_conf 443131160679948739999869999489999999479999997211999978507997765------32999637998
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE------RTAAYISQHDN 236 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~------~~~~yv~Q~d~ 236 (1433)
....+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++||+|+..
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCC
T ss_conf 1489861505788699799998999898889999875886366---7732886768520875551155416643022522
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999999999986672078732567699999988619999988689999975123457899999999909954345333
Q 000540 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVV 316 (1433)
Q Consensus 237 ~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~V 316 (1433)
+++.+||+||+.|+.+..+... ++...+++.+|+.+||++.+|..
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~- 137 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSY- 137 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSC-
T ss_pred CCCCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCC-
T ss_conf 2799649999999999849998----------------------------------99999999999976990355489-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 46445567755666899999982398544322598799999899999999998881398289999459447982059199
Q 000540 317 GDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 317 G~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~ii 396 (1433)
++.|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+.. +.+++.++|+..++..++|+++
T Consensus 138 ----~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 138 ----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp ----BSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred ----HHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEE
T ss_conf ----43499999989998640105898687446556589888567999999998646-9789998389999998699999
Q ss_pred EECCCEEEEECCHHHHH
Q ss_conf 97497299853987799
Q 000540 397 LLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 397 lL~~G~ivy~G~~~~~~ 413 (1433)
+|.+|++++.|++++++
T Consensus 213 vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 213 VISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEETTEEEEEEETTTTT
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799999987999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=315.46 Aligned_cols=209 Identities=24% Similarity=0.345 Sum_probs=168.0
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4313116067994873999986999948999999947999999721199997850799776---5329996379988899
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1433)
...+|+|+|+.|++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+..+ ++.++||+|+. +++.
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDN-VLLN 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCTT
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCC-CCCC
T ss_conf 960374248998499999999999998999999997357888---889999999944002465535288982446-5578
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999866720787325676999999886199999886899999751234578999999999099543453334644
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~ 320 (1433)
.||+||+.|+.... ..+...+.++. .+. .-.+..++...+|.+|+.+
T Consensus 91 ~Ti~eNi~~~~~~~----~~~~~~~~~~~---------------------~~~--------~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 91 RSIIDNISLANPGM----SVEKVIYAAKL---------------------AGA--------HDFISELREGYNTIVGEQG 137 (241)
T ss_dssp SBHHHHHCTTSTTC----CHHHHHHHHHH---------------------HTC--------HHHHTTSTTGGGSBCSTTT
T ss_pred CCCCCCCCCCCCCC----CHHHHHHHHHH---------------------HHH--------HHHHHHHHCCHHHHCCCCC
T ss_conf 40003522357554----38889999999---------------------755--------7888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 55677556668999999823985443225987999998999999999988813982899994594479820591999749
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~ 400 (1433)
. .|||||||||+|||+++.+|++++||||||+||+.++..|++.|+++.. +. +++.++|.. +....+|+|++|++
T Consensus 138 ~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l-~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 138 A-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GR-TVIIIAHRL-STVKNADRIIVMEK 212 (241)
T ss_dssp T-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TS-EEEEECSSG-GGGTTSSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CC-EEEEEECCH-HHHHHCCEEEEEEC
T ss_conf 8-6698898987544344416513556477655598999999999999858--99-899997889-99984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 72998539877999
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~ivy~G~~~~~~~ 414 (1433)
|+|+++|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=312.70 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=153.3
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|..+|++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 8999589999-------------999998062568848979999999999999999999669887--8887999867244
Q ss_pred C--CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1--12233478960488889998888999998871199999998999999999999299653223246988877899888
Q 000540 927 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQR 1004 (1433)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1433)
. ...++.+|||+|++.+++++|+.|++.|.+.++. .+..+.++.++++++.++|.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHH
T ss_conf 6839887218675001546878667788898998617---998999999999998679788885045-----33799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999999961997689829999999998999999999987289989999458438999740889999269499997899
Q 000540 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1005 kRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
||++||++|+.+|++|+|||||+|||+.+...+++.++++++.|.|||+++|++. ++...+|++++|++ |++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-99996999999989-999999289
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=312.55 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=173.3
Q ss_pred CCCCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC-------CEEEEECCC
Q ss_conf 4443131160679948739999869999489999999479999997211999978507997765-------329996379
Q 000540 162 KQHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-------RTAAYISQH 234 (1433)
Q Consensus 162 ~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-------~~~~yv~Q~ 234 (1433)
+....+|+|+|+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++||+|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC
Q ss_conf 9888999999999986672078732567699999988619999988689999975123457899999999909954-345
Q 000540 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CAD 313 (1433)
Q Consensus 235 d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~-~~d 313 (1433)
..+++.+||+||+.|+...+..+.. +..+....+..+|+.+||++ .++
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~L~~~~~~ 140 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGAM-------------------------------SGEERRKRALECLKMAELEERFAN 140 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCC-------------------------------CHHHHHHHHHHHHHHHCHHHHHHC
T ss_conf 2417686688877578887224789-------------------------------999999999998876242345534
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCC
Q ss_conf 33346445567755666899999982398544322598799999899999999998881398289999459447982059
Q 000540 314 TVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFD 393 (1433)
Q Consensus 314 t~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD 393 (1433)
. .+..|||||||||+||++|+.+|+++++||||+|||+.++.++++.|+++.+. .+++++.++|...+ ..++|
T Consensus 141 ~-----~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~-a~~~d 213 (230)
T d1l2ta_ 141 H-----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINV-ARFGE 213 (230)
T ss_dssp C-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHH-HTTSS
T ss_pred C-----CHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-HCCEEEEECCCHHH-HHHCC
T ss_conf 8-----80238999999999875652278889946876546989999999999999984-39999998788899-98699
Q ss_pred EEEEECCCEEEEECCH
Q ss_conf 1999749729985398
Q 000540 394 DIILLSNGQIVYQGPR 409 (1433)
Q Consensus 394 ~iilL~~G~ivy~G~~ 409 (1433)
+|++|.+|+|+++|+.
T Consensus 214 rv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 214 RIIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCEEEEECCC
T ss_conf 8999989999995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=317.29 Aligned_cols=212 Identities=22% Similarity=0.366 Sum_probs=166.8
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC---CEEEEECCCCCCCCC
Q ss_conf 43131160679948739999869999489999999479999997211999978507997765---329996379988899
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1433)
...+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++++..++ +.++||+|++ +++.
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEP-QVFG 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSC-CCCS
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCC-CCCC
T ss_conf 997674438998499899999999984999999986143787---689988998531101378887765404565-0027
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999866720787325676999999886199999886899999751234578999999999099543453334644
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~ 320 (1433)
.||+||+.|+..... ..+...+...+. ...-.+.+|++..+|.+++..
T Consensus 102 ~tv~eni~~g~~~~~---~~~~~~~~~~~~-----------------------------~~~~~i~~l~~g~~~~i~~~~ 149 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP---TMEEITAAAVKS-----------------------------GAHSFISGLPQGYDTEVDEAG 149 (251)
T ss_dssp SBHHHHHHCSCSSCC---CHHHHHHHHHHH-----------------------------TCHHHHHTSTTGGGCBCCSSC
T ss_pred CCHHHHHHHHHCCCC---HHHHHHHHHHHH-----------------------------HHHHHHHHCCCCCHHHHHCCC
T ss_conf 634655454210130---278899999999-----------------------------899999856121113675167
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 55677556668999999823985443225987999998999999999988813982899994594479820591999749
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~ 400 (1433)
..|||||||||+|||+|+.+|++++|||||++||+.+..+|++.|+++.+.. +.+++.++|.. +....+|+|++|++
T Consensus 150 -~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l-~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 150 -SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY-SRSVLLITQHL-SLVEQADHILFLEG 226 (251)
T ss_dssp -SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG-GCEEEEECSCH-HHHHTCSEEEEEET
T ss_pred -CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCH-HHHHHCCEEEEEEC
T ss_conf -6689547048998604456870787167576568536899999999976506-98999995979-99985999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 72998539877999
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~ivy~G~~~~~~~ 414 (1433)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=315.22 Aligned_cols=209 Identities=21% Similarity=0.276 Sum_probs=182.8
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+.+|+++++. . .+|+|||+.+++||.++|+||||||||||+++|+|.... .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 89998999949-------------9-788433789879989999989998299999999647688--8788999567346
Q ss_pred C-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1-122334789604888899988889999988711999999989999999999992996532232469888778998888
Q 000540 927 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 927 ~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1433)
. ...+|.+|||+|+..++|.+||+|++.|...++...+ +++++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 521657405615121111746657788888776405538------999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999619976898299999999989999999999872-89989999458438999740889999269499997899
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1006 Rlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=310.62 Aligned_cols=210 Identities=24% Similarity=0.355 Sum_probs=178.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 60679948739999869999489999999479999997211999978507997765-32999637998889999999999
Q 000540 170 DVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVRETLA 248 (1433)
Q Consensus 170 ~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~ 248 (1433)
|+|+.++ ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86672078732567699999988619999988689999975123457899999999909954345333464455677556
Q 000540 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQ 328 (1433)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGq 328 (1433)
|+.+... + .+.+.+++++++.+||++.+|.. +..|||||
T Consensus 93 ~~l~~~~------------~------------------------~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~ 131 (240)
T d2onka1 93 YGLRNVE------------R------------------------VERDRRVREMAEKLGIAHLLDRK-----PARLSGGE 131 (240)
T ss_dssp TTCTTSC------------H------------------------HHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHH
T ss_pred HHHCCCC------------H------------------------HHHHHHHHHHHHHCCCHHHHHCC-----HHHCCHHH
T ss_conf 5323367------------7------------------------88999999999863837566579-----44489999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 66899999982398544322598799999899999999998881398289999459447982059199974972998539
Q 000540 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408 (1433)
Q Consensus 329 rkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~ivy~G~ 408 (1433)
||||+||++|+.+|++++|||||+|||+.++..+++.++++.+.. +++++.++|...++..++|++++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743-9769998189999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 87799999956998999999678999
Q 000540 409 RELVLEFFESMGFKCPKRKGVADFLQ 434 (1433)
Q Consensus 409 ~~~~~~~F~~~Gf~~p~~~~~adfl~ 434 (1433)
+++++. ++...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=309.68 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=126.7
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 313116067994873999986999948999999947999999721199997850799776---53299963799888999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1433)
..+|+|||+.|++|+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++ +++..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN-ILFSD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC-CCCSS
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCC-CCCCC
T ss_conf 76064438998399899998899980999999997127863---000153998753078888634145651015-68998
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998667207873256769999998861999998868999997512345789999999990995434533346445
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~ 321 (1433)
||+||+.|+.... ..+.+.+ ++...+. .-.+..|++..||.+|+.+.
T Consensus 107 Ti~eNi~~g~~~~----~~~~~~~---------------------al~~~~l--------~~~i~~lp~gl~t~i~~~g~ 153 (255)
T d2hyda1 107 TVKENILLGRPTA----TDEEVVE---------------------AAKMANA--------HDFIMNLPQGYDTEVGERGV 153 (255)
T ss_dssp BHHHHHGGGCSSC----CHHHHHH---------------------HHHHTTC--------HHHHHTSTTGGGCBCCGGGT
T ss_pred CHHHHHHCCCCCC----CHHHHHH---------------------HHHHHCC--------HHHHHHCCCCCCCHHCCCCC
T ss_conf 7999985158679----9999999---------------------9999697--------99997362420103338889
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 56775566689999998239854432259879999989999999999888139828999945944798205919997497
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G 401 (1433)
.||||||||++|||+|+.+|++++|||||++||+.++..|++.|+++. .+.|+ +.++|.. +....+|+|++|++|
T Consensus 154 -~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~Tv-I~itH~~-~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 154 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTT-LIVAHRL-STITHADKIVVIENG 228 (255)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEE-EEECSSG-GGTTTCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEE-EEEECCH-HHHHHCCEEEEEECC
T ss_conf -849999999999999855998999837654479779999999999875--38889-9996899-999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2998539877999
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~ivy~G~~~~~~~ 414 (1433)
+++..|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=304.05 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=141.2
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC----------------CCEE
Q ss_conf 313116067994873999986999948999999947999999721199997850799776----------------5329
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP----------------ERTA 228 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----------------~~~~ 228 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+++...+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99637998889999999999866-72078732567699999988619999988689999975123457899999999909
Q 000540 229 AYISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1433)
Q Consensus 229 ~yv~Q~d~~~~~lTVrEtl~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lg 307 (1433)
+||+|+...++.+||.||+.|+. +..+.. ..+....+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KHDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------------------------------HHHHHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCCC----------------------------------HHHHHHHHHHHHHHCC
T ss_conf 899833231411010213656578762999----------------------------------8999999999999829
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHH
Q ss_conf 95434533346445567755666899999982398544322598799999899999999998881398289999459447
Q 000540 308 LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPE 387 (1433)
Q Consensus 308 L~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1433)
|.+-.+ +..+..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.++++.. . +++++.++|...+
T Consensus 138 l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl~~ 211 (258)
T d1b0ua_ 138 IDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 211 (258)
T ss_dssp CCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHHH
T ss_pred CCHHHH----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-C-CCCEEEEECCHHH
T ss_conf 952443----068220567788898999998439987885245556887888899876554103-6-8833899489999
Q ss_pred HHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 982059199974972998539877999
Q 000540 388 TYNLFDDIILLSNGQIVYQGPRELVLE 414 (1433)
Q Consensus 388 ~~~lfD~iilL~~G~ivy~G~~~~~~~ 414 (1433)
+..++|+|++|.+|++++.|++++++.
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 998699999997999999849999983
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=306.82 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=93.4
Q ss_pred EEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC---CCCC-EEEEEECCCCCCCCC
Q ss_conf 277330299981892999974699984579850508977855999999949027611---2233-478960488889998
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQE---TFAR-ISGYCEQNDIHSPFV 947 (1433)
Q Consensus 872 ~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~-~~gyv~Q~d~~~~~l 947 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|.... .+|+|.++|.+.... ..+| -++|++|+..++|.+
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~l 96 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8888302578889979999999998599999999678888--80389842443446608888874235567655457763
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8889999988711999999989999999999992-996532232469888778998888999999996199768982999
Q 000540 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1433)
Q Consensus 948 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPT 1026 (1433)
||+|++.+.+..+.+ .+..+..++++++.+ +|.+..+..+ ..||||||||++||++|+.+|++|+|||||
T Consensus 97 tv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Qrv~iAraL~~~P~lLllDEPt 167 (240)
T d1ji0a_ 97 TVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp BHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred CHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 699999988873278----88999999999987417688875854-----338999999999999998299874003988
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999998999999999987289989999458438999740889999269499997899
Q 000540 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1027 sGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
+|||+.+...+++.++++++.|.|||+++|+.. ++.+.+|++++|.+ |++++.|+.
T Consensus 168 ~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 223 (240)
T d1ji0a_ 168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 679999999999999999968998999958899-99996999999989-999998489
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=307.77 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=162.5
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 3131160679948739999869999489999999479999997211999978507997765----329996379988899
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIGE 240 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+++...++ +.++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999866720787325676999999886199999886899999751234578999999999099543453334644
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~ 320 (1433)
+||+||+.+++...+.... .....+ . ..+ ..++....++.+++.+++.+.+|..++
T Consensus 94 ltv~enl~~~~~~~~~~~~----~~~~~~---~-~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPL----NSLFYK---K-WIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHH----HHHHHC---S-SCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CEEEEEEEEHHHHCCCCCH----HHHHHH---C-CCC-------------CHHHHHHHHHHHHHHCCCCHHCCCCHH---
T ss_conf 7423214301333034504----566542---1-353-------------289999999999876196302059535---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 55677556668999999823985443225987999998999999999988813982899994594479820591999749
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~ 400 (1433)
.|||||||||.||++|+.+|++++|||||+|||+.++.++++.++++.. .+++++.++|...++.+++|+|++|++
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf --6991888899999999759272324397656999999999999999997--899899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 72998539877999
Q 000540 401 GQIVYQGPRELVLE 414 (1433)
Q Consensus 401 G~ivy~G~~~~~~~ 414 (1433)
|+++..|+++|+.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=303.24 Aligned_cols=215 Identities=21% Similarity=0.238 Sum_probs=184.1
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+.+|++.++ +...+|+|||+.+++||++||+||||||||||+++|+|..+. .+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEE
T ss_conf 69999789998-------------999988150668869979999989998299999999747667--899779999993
Q ss_pred CCC----------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 611----------------2233478960488889998888999998871199999998999999999999299653-22
Q 000540 926 KQE----------------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-KQ 988 (1433)
Q Consensus 926 ~~~----------------~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~ 988 (1433)
... ..++.+|||+|+..++|.+||.|++.+..... ...+..+.++.+.++++.++|.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCE
Q ss_conf 32469888778998888999999996199768982999999999899999999998728998999945843899974088
Q 000540 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1068 (1433)
Q Consensus 989 ~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~ 1068 (1433)
..+ ..|||||+||++||++|+.+|++|++||||+|||+.+...|++.++++.+.|.|||+++|++. ++...+|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 9999269499997899
Q 000540 1069 LFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1069 illL~~GG~~vy~G~~ 1084 (1433)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=303.75 Aligned_cols=209 Identities=23% Similarity=0.386 Sum_probs=153.5
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC---CEEEEECCCCCCCCCC
Q ss_conf 3131160679948739999869999489999999479999997211999978507997765---3299963799888999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEM 241 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1433)
..+|+|||+.|++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.... +.++||+|++ +++..
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCSS
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCCC
T ss_conf 76353328998599999999999985999999986216888---468987880121110665420687995025-44786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998667207873256769999998861999998868999997512345789999999990995434533346445
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~ 321 (1433)
|+++|+.|+.... . ..+.+.+ ++...+. .+ . +-.|++..+|.+|+.+
T Consensus 104 ti~~n~~~~~~~~-~--~~~~i~~---------------------a~~~~~l-----~~-~--i~~l~~gl~t~~~~~~- 150 (253)
T d3b60a1 104 TVANNIAYARTEE-Y--SREQIEE---------------------AARMAYA-----MD-F--INKMDNGLDTIIGENG- 150 (253)
T ss_dssp BHHHHHHTTTTSC-C--CHHHHHH---------------------HHHTTTC-----HH-H--HHHSTTGGGSBCCTTS-
T ss_pred CHHHHHHHCCCCC-C--CHHHHHH---------------------HHHHHHH-----HH-H--HHHCCCCCHHHHCCCC-
T ss_conf 2024332057220-8--9999999---------------------9999817-----99-9--9735544101434888-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 56775566689999998239854432259879999989999999999888139828999945944798205919997497
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G 401 (1433)
..|||||||||+|||+|+.+|++++||||||+||+.++..|++.|+++.. + .+++.++|.. +....+|+|++|++|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l-~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--N-RTSLVIAHRL-STIEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--T-SEEEEECSCG-GGTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--C-CEEEEEECCH-HHHHHCCEEEEEECC
T ss_conf 98499999999999999549988995164445898899999999987522--7-8899998879-999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2998539877999
Q 000540 402 QIVYQGPRELVLE 414 (1433)
Q Consensus 402 ~ivy~G~~~~~~~ 414 (1433)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7e-45 Score=300.59 Aligned_cols=208 Identities=26% Similarity=0.299 Sum_probs=181.7
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC--CCEEEEECCCCCCCCCC
Q ss_conf 4313116067994873999986999948999999947999999721199997850799776--53299963799888999
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEM 241 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~l 241 (1433)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+... ++.++||+|.+..++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998667207873256769999998861999998868999997512345789999999990995434533346445
Q 000540 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMI 321 (1433)
Q Consensus 242 TVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~ 321 (1433)
||+|++.|...+.+... .+....++.+++.++|.+-.+..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred CHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf 67788898998617998----------------------------------9999999999986797888850453----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 56775566689999998239854432259879999989999999999888139828999945944798205919997497
Q 000540 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNG 401 (1433)
Q Consensus 322 ~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G 401 (1433)
.+|||||||+++|++|+.+|++++|||||+|||+.++.++++.++++.. . +.+++.++|...++..++|+|++|++|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred -HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf -3799898999999998659998873379889798999999999999996-5-998999959899999969999999899
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 29985398779999
Q 000540 402 QIVYQGPRELVLEF 415 (1433)
Q Consensus 402 ~ivy~G~~~~~~~~ 415 (1433)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEECCHHHHHHC
T ss_conf 99999289999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=316.51 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=163.6
Q ss_pred CCCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCC
Q ss_conf 44313116067994873999986999948999999947999999721199997850799776---532999637998889
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIG 239 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1433)
....+|+|||+.++||++++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++ +++
T Consensus 13 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf 88 (242)
T d1mv5a_ 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDS-AIM 88 (242)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSS-CCC
T ss_pred CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCC-CCC
T ss_conf 9984142258998599999999999997999999999960989---877988998844246788874367975665-457
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999986672078732567699999988619999988689999975123457899999999909954345333464
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~ 319 (1433)
..||+||+.++...... .+...+..+... . .-.+..+++..+|.+|+.
T Consensus 89 ~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~~~~i~~~ 136 (242)
T d1mv5a_ 89 AGTIRENLTYGLEGDYT---DEDLWQVLDLAF---A--------------------------RSFVENMPDQLNTEVGER 136 (242)
T ss_dssp CEEHHHHTTSCTTSCSC---HHHHHHHHHHHT---C--------------------------TTTTTSSTTGGGCEESTT
T ss_pred CCCHHHHEECCCCCCCC---HHHHHHHHHHHH---H--------------------------HHHHCCCCCCCCCCCCCC
T ss_conf 85345430124455542---356778999997---5--------------------------554203742101523687
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 45567755666899999982398544322598799999899999999998881398289999459447982059199974
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~ 399 (1433)
+. .|||||||||+|||+|+.+|++++|||||++||+.++..|++.|+++. .+.| ++.++|... ....+|+|++|+
T Consensus 137 g~-~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~T-vi~itH~l~-~~~~~D~i~vl~ 211 (242)
T d1mv5a_ 137 GV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLS-TIVDADKIYFIE 211 (242)
T ss_dssp SB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHH-HHHHCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCE-EEEEECCHH-HHHHCCEEEEEE
T ss_conf 89-879999999999999852998999658865569889999988788871--7998-999978799-998499999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 972998539877999
Q 000540 400 NGQIVYQGPRELVLE 414 (1433)
Q Consensus 400 ~G~ivy~G~~~~~~~ 414 (1433)
+|+++++|+++++++
T Consensus 212 ~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 212 KGQITGSGKHNELVA 226 (242)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=306.12 Aligned_cols=218 Identities=24% Similarity=0.255 Sum_probs=185.4
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.++.+|++.++ +..++|+|||+.+++||+++|+||||||||||+++|+|..+.. +|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~--~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEEC
T ss_conf 69997789997-------------9968871217998899799999999984999999997797688--73799999966
Q ss_pred CCCC----CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6112----233478960488889998888999998871199----------99999899999999999929965322324
Q 000540 926 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------PEIDSETRKMFIGEVMELVELKPLKQSLV 991 (1433)
Q Consensus 926 ~~~~----~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~----------~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 991 (1433)
.... .++-++|++|+...++.+||.|++.+++..+.. .....++..+.+.++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 69888778998888999999996199768982999999999899999999998728998999945843899974088999
Q 000540 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1071 (1433)
Q Consensus 992 g~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~ill 1071 (1433)
..||||||||+.||++|+.+|++|+|||||+|||+.+...+++.|+++++.|.|||+++|+.. ++.+.+|++++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf -----569918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 92694999978998
Q 000540 1072 MKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1072 L~~GG~~vy~G~~g 1085 (1433)
|.+ |+++..|+..
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=306.04 Aligned_cols=206 Identities=22% Similarity=0.345 Sum_probs=174.0
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC----CEEEEECCCCCCCC
Q ss_conf 43131160679948739999869999489999999479999997211999978507997765----32999637998889
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1433)
...+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+...++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 988883025788899799999999985999999996788888---03898424434466088888742355676554577
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCC
Q ss_conf 9999999998667207873256769999998861999998868999997512345789999999990-995434533346
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTVVGD 318 (1433)
Q Consensus 240 ~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~l-gL~~~~dt~VG~ 318 (1433)
.+||+||+.+++........ .....+.++..+ +|++.++..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred CCCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH-
T ss_conf 63699999988873278889-----------------------------------999999999874176888758543-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 44556775566689999998239854432259879999989999999999888139828999945944798205919997
Q 000540 319 EMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL 398 (1433)
Q Consensus 319 ~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL 398 (1433)
.|||||||||+||++|+.+|++|+|||||+|||+.++.++++.++++.. . +++++.++|+..++.+++|++++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEE
T ss_conf ----3899999999999999829987400398867999999999999999996-8-998999958899999969999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 4972998539877999
Q 000540 399 SNGQIVYQGPRELVLE 414 (1433)
Q Consensus 399 ~~G~ivy~G~~~~~~~ 414 (1433)
.+|++++.|+++++.+
T Consensus 213 ~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 213 ETGQIVLEGKASELLD 228 (240)
T ss_dssp ETTEEEEEEEHHHHHT
T ss_pred ECCEEEEECCHHHHHC
T ss_conf 8999999848999842
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=306.97 Aligned_cols=211 Identities=26% Similarity=0.429 Sum_probs=172.5
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+|+||+|+++. +.+.+|+|||+.+++|+.+||+|+||||||||+++|+|.... .+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 9299999999089-----------996037424899849999999999999899999999735788--888999999994
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 61---12233478960488889998888999998871199999998999999999999299-------653223246988
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL-------KPLKQSLVGLPG 995 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~ 995 (1433)
.. ..+++.++||+|+..+ ...||+|++.+.. .+.+.+. +++.++..++ ..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVL-LNRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCC-TTSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCC-CCCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 400246553528898244655-7840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 87789988889999999961997689829999999998999999999987289989999458438999740889999269
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 996 ~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~G 1075 (1433)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++.+ ++|+|+++|+++ ....+|++++|++
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -86698898987544344416513556477655598999999999999858-998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499997899
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 G~~vy~G~~ 1084 (1433)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-44 Score=298.12 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=172.5
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+|+||+|+++.. ....+|+|||+.+++|+.+||+||||||||||+++|+|...+ ..|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69999989988999----------999767443899849989999999998499999998614378--768998899853
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 61---122334789604888899988889999988711999999989999-----9999999929965322324698887
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKM-----FIGEVMELVELKPLKQSLVGLPGVS 997 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l~L~~~~~~~vg~~~~~ 997 (1433)
.. ..+++.++||+|+..++ ..||+|++.|... .......... ...+.++ .|..-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 1101378887765404565002-7634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 78998888999999996199768982999999999899999999998728-99899994584389997408899992694
Q 000540 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 998 glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG 1076 (1433)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.|+++.+. ++|+|+++|+++ ..+.+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997899
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~vy~G~~ 1084 (1433)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7e-45 Score=300.54 Aligned_cols=212 Identities=25% Similarity=0.384 Sum_probs=175.2
Q ss_pred CEEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 40257003767514410031354588527733029998189299997469998457985050897785599999994902
Q 000540 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP 924 (1433)
Q Consensus 845 ~~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 924 (1433)
..|+|+||+|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|.... .+|.|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEE
T ss_conf 87999988999599-----------997606443899839989999889998099999999712786--30001539987
Q ss_pred CCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 761---12233478960488889998888999998871199999998999999999999299653-------22324698
Q 000540 925 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLP 994 (1433)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 994 (1433)
... ..+++.++||+|++.++ ..||+|++.|+. .+.+.+ .+.++++..++.+. .++.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 53078888634145651015689-987999985158-----679999----99999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 88778998888999999996199768982999999999899999999998728998999945843899974088999926
Q 000540 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 995 ~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~ 1074 (1433)
+ ..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|++
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIEN 227 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf 8-9849999999999999855998999837654479779999999999875-3888999968999--9985999999989
Q ss_pred CCEEEEECCC
Q ss_conf 9499997899
Q 000540 1075 GGYEIYVGPL 1084 (1433)
Q Consensus 1075 GG~~vy~G~~ 1084 (1433)
|+++..|+.
T Consensus 228 -G~iv~~G~~ 236 (255)
T d2hyda1 228 -GHIVETGTH 236 (255)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -999998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=307.79 Aligned_cols=210 Identities=26% Similarity=0.421 Sum_probs=170.8
Q ss_pred EEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 25700376751441003135458852773302999818929999746999845798505089778559999999490276
Q 000540 847 LTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK 926 (1433)
Q Consensus 847 i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 926 (1433)
|+++||+|+++. .+.+|+|||+.++||+.+||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 799988998799------------98414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCC
Q ss_conf 1---1223347896048888999888899999887119999999899999999999929965-------32232469888
Q 000540 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKP-------LKQSLVGLPGV 996 (1433)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~ 996 (1433)
. ..+++.++||+|++.+++ .|++|++.+.. ....+.+. +++.++..++.. ..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 2467888743679756654578-53454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 77899888899999999619976898299999999989999999999872899899994584389997408899992694
Q 000540 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1433)
Q Consensus 997 ~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG 1076 (1433)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|||+++|+++ ....+|++++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997899
Q 000540 1077 YEIYVGPL 1084 (1433)
Q Consensus 1077 ~~vy~G~~ 1084 (1433)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.8e-45 Score=299.72 Aligned_cols=193 Identities=23% Similarity=0.373 Sum_probs=171.7
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 029998189299997469998457985050897785599999994902761-1223347896048888999888899999
Q 000540 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLLY 955 (1433)
Q Consensus 877 ~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~f 955 (1433)
|||+.+. ++.++|+||||||||||+++|+|..++ .+|+|.++|.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 88711999999989999999999992996532232469888778998888999999996199768982999999999899
Q 000540 956 SAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1433)
Q Consensus 956 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~ 1035 (1433)
+. + ..+..+++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999998728-9989999458438999740889999269499997899
Q 000540 1036 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1036 ~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|..
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-44 Score=296.29 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=173.1
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+|+||+|+++. ....+|+|||+.+++|+.+||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999988999299-----------997635332899859999999999998599999998621688--846898788012
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 61---12233478960488889998888999998871199999998999999999999299653-------223246988
Q 000540 926 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL-------KQSLVGLPG 995 (1433)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~ 995 (1433)
.. ..+++.++||+|+..++ ..|+++++.+.. +...+.+ .++++++..++.+. .++.+|..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 1110665420687995025447-862024332057----2208999----99999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 87789988889999999961997689829999999998999999999987289989999458438999740889999269
Q 000540 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1433)
Q Consensus 996 ~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~G 1075 (1433)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+++|+++ ..+.+|++++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 898499999999999999549988995164445898899999999987522-788999988799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499997899
Q 000540 1076 GYEIYVGPL 1084 (1433)
Q Consensus 1076 G~~vy~G~~ 1084 (1433)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-43 Score=293.11 Aligned_cols=198 Identities=23% Similarity=0.343 Sum_probs=157.0
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 31311606799487399998699994899999994799999972119999785079977653299963799888999999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVr 244 (1433)
.++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+. +++..||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~-~l~~~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFS-WIMPGTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSC-CCCSEEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCC-CCCCCEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------999981643-02676032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998667207873256769999998861999998868999997512345789999999990995434533346445567
Q 000540 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGI 324 (1433)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~gl 324 (1433)
||+.|+..... .++ ....+. .+....+..+.+..++.+|+.+. .|
T Consensus 115 eni~~~~~~~~--~~~---~~~~~~-----------------------------~~~~~~i~~l~~~~~~~~~~~~~-~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRY---KSVVKA-----------------------------CQLQQDITKFAEQDNTVLGEGGV-TL 159 (281)
T ss_dssp HHHTTTSCCCH--HHH---HHHHHH-----------------------------TTCHHHHTTSTTGGGCEECTTCT-TS
T ss_pred CCCCCCCCCCC--HHH---HHHHHH-----------------------------HHHHHHHHHCHHHHHHHHHHHCC-CC
T ss_conf 14203334560--579---999999-----------------------------77699998461233235555423-77
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 75566689999998239854432259879999989999999999888139828999945944798205919997497299
Q 000540 325 SGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIV 404 (1433)
Q Consensus 325 SGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~iv 404 (1433)
||||||||++||+|+.+|++++|||||++||+.+..++++.+.... ..+.+++.++|+. +....+|+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~--~~~~tvi~itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL--MANKTRILVTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC--TTTSEEEEECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECHH-HHHHHCCEEEEEECCEEE
T ss_conf 9999999999999986963513338554489899999999999886--2899999992528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 8539877999
Q 000540 405 YQGPRELVLE 414 (1433)
Q Consensus 405 y~G~~~~~~~ 414 (1433)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-40 Score=273.97 Aligned_cols=187 Identities=21% Similarity=0.372 Sum_probs=150.1
Q ss_pred EEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 27733029998189299997469998457985050897785599999994902761122334789604888899988889
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1433)
Q Consensus 872 ~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTV~E 951 (1433)
+++|+|||+.+++|+++||+||||||||||+++|+|.... .+|.|.++|. ++|++|+..+.+ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 7677375999859999999989998299999999579747--8828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999988711999999989999999999992-------9965322324698887789988889999999961997689829
Q 000540 952 SLLYSAWLRLPPEIDSETRKMFIGEVMELV-------ELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1433)
Q Consensus 952 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-------~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDE 1024 (1433)
++.|.. ...... .+++++.. .+.+..++.+|..+ ..||||||||++|||+|+.+|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999989999999999872899899994584389997408899992694999978998
Q 000540 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLG 1085 (1433)
Q Consensus 1025 PTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~g 1085 (1433)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|++ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-41 Score=274.84 Aligned_cols=193 Identities=23% Similarity=0.353 Sum_probs=100.0
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEEECCCCCCCCCCHH
Q ss_conf 733029998189299997469998457985050897785599999994902761---12233478960488889998888
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 950 (1433)
Q Consensus 874 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~ 950 (1433)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999887119999999899999999999929965322324698887789988889999999961-------99768982
Q 000540 951 ESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1433)
Q Consensus 951 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~-------~p~iLlLD 1023 (1433)
+.+.+... . ..+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|++|+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999999998999999999987289989999458438999740889999269499997899
Q 000540 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1024 EPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
|||+|||+.+...+++.++++.+.|.|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 877778989999999999999867999999967799-99997999999979-989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-39 Score=266.77 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=167.3
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 131160679948739999869999489999999479999997211999978507997765---32999637998889999
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEMT 242 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1433)
+.|+|||+.|++||+++|+||||||||||+++|+|.. ++ +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999986672078732567699999988619999988689999975123457899999999909954345333464455
Q 000540 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322 (1433)
Q Consensus 243 VrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~ 322 (1433)
+.+++.++..-+ .....++.+++.++|++..+..+ +
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~-----~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRST-----N 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBG-----G
T ss_pred HHHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCH-----H
T ss_conf 988764100146---------------------------------------68999999998659876767684-----4
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 677556668999999823-------9854432259879999989999999999888139828999945944798205919
Q 000540 323 GISGGQRKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDI 395 (1433)
Q Consensus 323 glSGGqrkRvsia~~l~~-------~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~i 395 (1433)
.|||||||||++|++++. +|++++|||||+|||..+...+.+.++++.. . +++++.++|...++.+.+|++
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7-999999967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997497299853987799
Q 000540 396 ILLSNGQIVYQGPRELVL 413 (1433)
Q Consensus 396 ilL~~G~ivy~G~~~~~~ 413 (1433)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.7e-38 Score=258.51 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=156.1
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.|+++|+++.++ +.+|+|+|+.+++|++++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEH
T ss_conf 599998999939--------------9288420889859989999999997199999999662056--778899998962
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 61122334789604888899988889999988711999999989999999999992996532232469888778998888
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1433)
.. .+..++|++|+..+...+|++|++.+.+.++... ... ..+.+.++.+++.+.... + ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCCC-C-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----999999987488563012-6-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 999999996199768982999999999899999999998728998999945843899974088999926
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1433)
Q Consensus 1006 Rlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~ 1074 (1433)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+.+.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.7e-36 Score=244.19 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=147.9
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 13116067994873999986999948999999947999999721199997850799776532999637998889999999
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 245 (1433)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|+.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986672078732567699999988619999988689999975123457899999999909954345333464455677
Q 000540 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGIS 325 (1433)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glS 325 (1433)
++.+.+...+..... ..+...++.+++.+. +.. +..||
T Consensus 90 ~l~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~-~~~-----~~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNK------------------------------------NEIMDALESVEVLDL-KKK-----LGELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCH------------------------------------HHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHHCCCCCCH------------------------------------HHHHHHHHHCCCCCC-CCC-----CCCCC
T ss_conf 999999754886379------------------------------------999999987488563-012-----68689
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 556668999999823985443225987999998999999999988813982899994594479820591999749
Q 000540 326 GGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 326 GGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~ 400 (1433)
||||||+.+|++++.+|++++|||||+|||..+...+++.+++..+. .++++++.+|. .+++|.+..|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC----CTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 71888899999886499899986862016999999999999999867-99999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=1.2e-14 Score=107.13 Aligned_cols=80 Identities=16% Similarity=0.064 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 899888899999999619976898299999999989999999999872-8998999945843899974088999926949
Q 000540 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGY 1077 (1433)
Q Consensus 999 lSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~ 1077 (1433)
+++|++++..+++++..+|+++++|||+...+ .....+..+.+..+ .+.+++.++|+.+ ....+|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999789
Q 000540 1078 EIYVGP 1083 (1433)
Q Consensus 1078 ~vy~G~ 1083 (1433)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=1.6e-13 Score=100.00 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=95.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99998699994899999994799999972119999785079977653--2999637998889999999999866720787
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPER--TAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~--~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~ 257 (1433)
.++|.||||||||||++.++|.+++. .|.+...+.+......+. .+.++..........+..+...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVG------- 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEET-------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 89999899938999999998148888---64699877132888876531123366777887541134554430-------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32567699999988619999988689999975123457899999999909954345333464455677556668999999
Q 000540 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEM 337 (1433)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~ 337 (1433)
+ ..+ +.....+++|+++|..++++
T Consensus 72 -~------------------------------------------------------~~~-~~~~~~~~~~~~~~~~l~~~ 95 (178)
T d1ye8a1 72 -S------------------------------------------------------YGV-NVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -T------------------------------------------------------EEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred -H------------------------------------------------------HHC-CCCHHHHHHHHHHHHHHHHH
T ss_conf -2------------------------------------------------------303-76256653201378999999
Q ss_pred HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 82398544322598799999899999999998881398289999459447982059199974972998539
Q 000540 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGP 408 (1433)
Q Consensus 338 l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~ivy~G~ 408 (1433)
+...|+++++|||.... .........+.+...... ++++.++| ..+...+.|++..+.+|+++.-++
T Consensus 96 ~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~-~~il~~~h-~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 96 KKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPN-VNVVATIP-IRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTT-SEEEEECC-SSCCSHHHHHHHTCTTCEEEECCT
T ss_pred HHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCC-CEEEEEEC-CHHHHHHHCEEEEEECCEEEEECC
T ss_conf 74099742302777310--045799999998750579-78999974-477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=2.3e-09 Score=73.41 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 77899888899999999----61997689829999999998999999999987289989999458438999740889999
Q 000540 997 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 997 ~glSgGqrkRlsia~~L----~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL 1072 (1433)
..+|.|||+.+.++..+ ..+++++++|||-++|++.....+.+.|+..++ +.-|++|+|.|. +++.+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--99732428999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=4.5e-09 Score=71.53 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 77899888899999999----61997689829999999998999999999987289989999458438999740889999
Q 000540 997 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1433)
Q Consensus 997 ~glSgGqrkRlsia~~L----~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL 1072 (1433)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|+|+|+|. +.+..|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--99736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=2.5e-08 Score=66.74 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 55677556668999999----82398544322598799999899999999998881398289999459447982059199
Q 000540 321 IRGISGGQRKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~----l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~ii 396 (1433)
...+|+|||+...++.. ...++++++.|||-++|++.....+.+.|++... .+- +.++.|+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Q-viitTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQ-FIVITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSE-EEEECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC---CCE-EEEEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554---887-999989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--7497
Q 000540 397 L--LSNG 401 (1433)
Q Consensus 397 l--L~~G 401 (1433)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=6.4e-07 Score=57.74 Aligned_cols=75 Identities=16% Similarity=0.307 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 556775566689999998----2398544322598799999899999999998881398289999459447982059199
Q 000540 321 IRGISGGQRKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~l----~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~ii 396 (1433)
+.-+|||||.++++|-.+ ..+++++++|||.++||+.....+.+.|++.. ...+-++ ++.|.|++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~--~~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR--NPDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC--BTTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEE-EEECCHHHHHHCCCEE
T ss_conf 333223047999999999995479997799968877789999999999999972--8998899-9958789997366179
Q ss_pred EE
Q ss_conf 97
Q 000540 397 LL 398 (1433)
Q Consensus 397 lL 398 (1433)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.89 E-value=0.00016 Score=42.42 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=14.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 98189299997469998457985050
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 881 ~i~pG~~~ai~G~sGaGKTTLl~~La 906 (1433)
-++||+++.|.|++|+||||++.-++
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 97898089999479997999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.73 E-value=0.00013 Score=42.94 Aligned_cols=60 Identities=8% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 8889999999961997689829999999998999999-9999872899899994584389997
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFE 1064 (1433)
Q Consensus 1003 qrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~-~l~~~~~~g~Tvi~t~Hqps~~i~~ 1064 (1433)
|-++++-......+.+++++||..+|-|+.....+.. .+..+.+.+..+++++|.. ++.+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 678898775028977278554545686233200258888888862376137865202--3332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00041 Score=39.80 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCCH
Q ss_conf 8889999999961997689829999999998999999-99998728-9989999458438
Q 000540 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPSI 1060 (1433)
Q Consensus 1003 qrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~-~l~~~~~~-g~Tvi~t~Hqps~ 1060 (1433)
|-+|+.-......+.+++++||+-+|-++.....+.. .++.+... +..+++|+|....
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 999999999745466088532223587745666789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.60 E-value=0.00022 Score=41.54 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=31.1
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
Q ss_conf 23985443225987999998999999999988813982899994594479820
Q 000540 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNL 391 (1433)
Q Consensus 339 ~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~l 391 (1433)
.+..+++++||+.+|-++.....+...+-+.....+...++ .+|+ .++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~-tTH~-~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF-ATHY-FELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-ECCC-HHHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEE-EEEC-HHHHHH
T ss_conf 89772785545456862332002588888888623761378-6520-233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00039 Score=39.91 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=28.9
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECC
Q ss_conf 239854432259879999989999999-9998881398289999459
Q 000540 339 VGPALALFMDEISTGLDSSTTFQIVNC-FKQNIHINCGTAVISLLQP 384 (1433)
Q Consensus 339 ~~~~~il~lDEptsgLDs~t~~~iv~~-L~~~~~~~~~t~ii~i~q~ 384 (1433)
..+.+++++||+.+|-++.....+... +..+... ....++..+|.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCH
T ss_conf 54660885322235877456667898764543204-54428985246
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=6.2e-05 Score=45.05 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8739999869999489999999479999997211999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1433)
+|+.++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.38 E-value=0.00091 Score=37.57 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=15.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7994873999986999948999999947
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
|-+.+|++++|.|+||||||+|+.-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8986984999991899999999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.0031 Score=34.18 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=11.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87399998699994899999994
Q 000540 177 PGRLTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~ 199 (1433)
||++++|.|++|+|||||+..|+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89589999289998999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.004 Score=33.43 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=74.7
Q ss_pred EEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 27733029998189299997469998457985050897785599999994902761122334789604888899988889
Q 000540 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYE 951 (1433)
Q Consensus 872 ~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTV~E 951 (1433)
..++.+ +.||+++.|.|++|+|||||+--|+-....|. . +.+..... ...+-|+..++.. -.+.+
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~---~--~~~~~~~~---~~~vl~~~~E~~~---~~~~~ 84 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP---D--LLEVGELP---TGPVIYLPAEDPP---TAIHH 84 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC---C--TTCCCCCC---CCCEEEEESSSCH---HHHHH
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC---C--CCCCCCCC---CCCEEEEECCCHH---HHHHH
T ss_conf 898689----55895899992899989999999999997699---7--21112357---8736898512349---99999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC----
Q ss_conf 9999887119999999899999999999929965322324698887789988889999999961997689829999----
Q 000540 952 SLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS---- 1027 (1433)
Q Consensus 952 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTs---- 1027 (1433)
- +.+.. .+.+..... .....+.+.+..+.. .....-... .--..-..+++++++|--+.
T Consensus 85 R--l~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~lvviD~l~~~~~~ 147 (274)
T d1nlfa_ 85 R--LHALG---AHLSAEERQ----AVADGLLIQPLIGSL-----PNIMAPEWF---DGLKRAAEGRRLMVLDTLRRFHIE 147 (274)
T ss_dssp H--HHHHH---TTSCHHHHH----HHHHHEEECCCTTSC-----CCTTSHHHH---HHHHHHHTTCSEEEEECGGGGCCS
T ss_pred H--HHHHH---HCCCHHHHH----CCCCCCEECCCCCCC-----CHHHHHHHH---HHHHHHCCCCCEEECCCHHHHCCC
T ss_conf 9--99986---236866653----123332321456742-----035789999---998875267658962813542266
Q ss_pred -CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -99999899999999998728-99899994584
Q 000540 1028 -GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1058 (1433)
Q Consensus 1028 -GLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqp 1058 (1433)
--|......+++.++.++.. +++|+++.|..
T Consensus 148 ~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 148 EENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 523225689999887777644797540131005
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.22 E-value=0.00013 Score=43.08 Aligned_cols=27 Identities=44% Similarity=0.569 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00014 Score=42.83 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.00015 Score=42.61 Aligned_cols=26 Identities=38% Similarity=0.717 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999986999948999999947999
Q 000540 178 GRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
|++..|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0002 Score=41.78 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+|..++++|+||+|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=6.9e-05 Score=44.74 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8739999869999489999999479999997211999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1433)
+|+.++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.90 E-value=0.0063 Score=32.20 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=37.4
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 9999961997689829999999998999999999987289989999458438999740889
Q 000540 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069 (1433)
Q Consensus 1009 ia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~i 1069 (1433)
+..+|-.+|.++++.|.. |..++...+++ +.+|+.|+.|+|-.+. +...+++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCCCH--HHHHHHH
T ss_conf 999984138889845768---75999999999----7249858998336766--7665432
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00019 Score=41.94 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.+.+..|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.83 E-value=0.00025 Score=41.19 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.8
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 299981892999974699984579850508977
Q 000540 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 878 vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+...++.+..+.|.|++||||||||++|.+..+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999998378889994035662578999865301
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.82 E-value=0.00021 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999869999489999999479999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
+...|+|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0052 Score=32.73 Aligned_cols=27 Identities=41% Similarity=0.653 Sum_probs=17.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.+-+++.||||+|||++.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.81 E-value=0.00042 Score=39.71 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=20.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
++|.++.|.|+|||||||+.++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.81 E-value=0.00028 Score=40.82 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.++|.||||||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00052 Score=39.13 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=23.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799487399998699994899999994799
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
|-+.+|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.75 E-value=0.00039 Score=39.94 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=23.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 739999869999489999999479999
Q 000540 178 GRLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.+.+++.||||+|||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.0004 Score=39.87 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 92999974699984579850508977
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
|.++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00054 Score=39.02 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.|.+..|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.72 E-value=0.00038 Score=39.97 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
++++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.70 E-value=0.00043 Score=39.66 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+|-.++|.|||||||||+.+.|+-++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.59 E-value=0.00076 Score=38.06 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999869999489999999479
Q 000540 179 RLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
+++.|.|+|||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.58 E-value=0.00058 Score=38.83 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=17.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999986999948999999947999
Q 000540 178 GRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.56 E-value=0.0011 Score=36.96 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 892999974699984579850508977
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
.|+++.|.|++||||||+.+.|+.+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.55 E-value=0.00085 Score=37.76 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399998699994899999994799
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+|-.+.|+|||||||||+.+.|+-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00014 Score=42.86 Aligned_cols=26 Identities=46% Similarity=0.669 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999869999489999999479999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.53 E-value=0.00081 Score=37.90 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.52 E-value=0.00088 Score=37.66 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998699994899999994799
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.51 E-value=0.00023 Score=41.44 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.|..++++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.51 E-value=0.00076 Score=38.07 Aligned_cols=23 Identities=52% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
++|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.50 E-value=0.00041 Score=39.80 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.+.++.|+|||||||||+.+.|+.++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6782899989999987999999999869
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.50 E-value=0.00079 Score=37.96 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999746999845798505089
Q 000540 888 TALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++|+|++|+|||||++.|.|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.48 E-value=0.0049 Score=32.87 Aligned_cols=23 Identities=52% Similarity=0.761 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-+++.||||+|||+|.++++..+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.001 Score=37.18 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79948739999869999489999999479
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
|-+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869969999838999889999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.45 E-value=0.0017 Score=35.79 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=34.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 679948739999869999489999999479999997211999978507997765329996379
Q 000540 172 SGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234 (1433)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~ 234 (1433)
.|-+++|+++.|.|+||+|||||..-++-..-.. .....+.-.........+.+.|+.-+
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~e 87 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP---EFLFYDEEAVSKGEVAQPKAVYIDTE 87 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG---GGEECCTTTSCTTTTSSEEEEEEESS
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCHHCCCEEEEEEEC
T ss_conf 7986288599999179999899999999999853---79743775300310038519999956
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00075 Score=38.09 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++|.|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00087 Score=37.70 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.++.|+|||||||||+.+.|+.++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.39 E-value=0.0011 Score=37.01 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=33.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 39999869999489999999479999997211999978507997765329996379
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~ 234 (1433)
.-++++||+|+|||-|.+.||+.++. -=+..++...+ .+|||..+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 64799899998899999999987389-----88986255114------11111044
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00091 Score=37.58 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 892999974699984579850508977
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
.|.++.|+||||+|||||++.|..+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0042 Score=33.33 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+|++|.+|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.34 E-value=0.0013 Score=36.55 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999869999489999999479999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
++++|.|+|||||||+.+.|+.++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.33 E-value=0.001 Score=37.27 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++|+|+||+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.31 E-value=0.0017 Score=35.78 Aligned_cols=27 Identities=41% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 799487399998699994899999994
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~ 199 (1433)
|=+++|++++|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.00076 Score=38.07 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=16.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.|..+.+.|+|||||||+.+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0014 Score=36.30 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 873999986999948999999947
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+-++++++|+|||||||+.+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.22 E-value=0.0013 Score=36.50 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0017 Score=35.88 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0012 Score=36.87 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=10.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999986999948999999947
Q 000540 179 RLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-.++|.||||||||||++.|..
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2897438999989999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.0015 Score=36.17 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=6.6e-05 Score=44.87 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=19.6
Q ss_pred ECCEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 116067994873999986999948999999947
Q 000540 168 LKDVSGIIKPGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 168 L~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+++.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.0096 Score=31.03 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-+.|.||+|+|||+|.+++++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 5788789987630477887877
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.17 E-value=0.00069 Score=38.35 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.6
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 31160679948739999869999489999999479
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
-|+++.+-++||++++|.|+||+|||||+.-++-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.10 E-value=0.0015 Score=36.09 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.+.|+|||||||||+.+.|+-++
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0015 Score=36.15 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=6.7e-05 Score=44.80 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=27.1
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 330299981892999974699984579850508
Q 000540 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 875 L~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.++.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.05 E-value=0.0018 Score=35.71 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-++++|+|++|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0014 Score=36.30 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+.+.|||||||||+.+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.002 Score=35.36 Aligned_cols=23 Identities=39% Similarity=0.346 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+++|-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978988789999999999983
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.01 E-value=0.002 Score=35.41 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1892999974699984579850508977
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
++|-.++|+|++||||||+.+.|+.+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0017 Score=35.78 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|+|++|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0018 Score=35.60 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.+.|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.99 E-value=0.0021 Score=35.25 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+.|+|||||||||+.+.|+-++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.98 E-value=0.0024 Score=34.87 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+++++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.98 E-value=0.0019 Score=35.49 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0027 Score=34.57 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=22.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7994873999986999948999999947
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
|-+++|+++.|.||||||||+|...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0026 Score=34.70 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999746999845798505089
Q 000540 888 TALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++++|++|+|||||++.|.|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.97 E-value=0.0022 Score=35.08 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.++|+|||||||||+.+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.96 E-value=0.0013 Score=36.57 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECC
Q ss_conf 299997469998457985050897-7855999999949
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNIKVSG 922 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g 922 (1433)
..++|+|++|||||||+..|..+. ..|...+-|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.96 E-value=0.0022 Score=35.15 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.002 Score=35.36 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
..++.||||+||||+.++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0018 Score=35.72 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
-++|+|||||||+||++.|+...+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.90 E-value=0.0022 Score=35.09 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.++|.|+.|||||||++.|..
T Consensus 53 ~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 986117998889999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.0015 Score=36.26 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99974699984579850508
Q 000540 888 TALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag 907 (1433)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0032 Score=34.03 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8929999746999845798505089
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+..-+.+.||+|+|||++.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0027 Score=34.54 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-++|+|.||+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.84 E-value=0.0027 Score=34.52 Aligned_cols=22 Identities=59% Similarity=0.878 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..|+|||||||||+.+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.83 E-value=0.0017 Score=35.76 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0025 Score=34.79 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.81 E-value=0.0031 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.++|-|||||||||+.+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0032 Score=34.07 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+++|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0029 Score=34.35 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+.++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.78 E-value=0.0029 Score=34.36 Aligned_cols=27 Identities=44% Similarity=0.584 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
|-.-+++.||||+|||++.++|+....
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.0019 Score=35.55 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.78 E-value=0.0038 Score=33.62 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99818929999746999845798505
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVL 905 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~L 905 (1433)
|-+++|+++.|.|++|+|||+|..-+
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 89969839999947999999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.002 Score=35.41 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=24.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94873999986999948999999947999
Q 000540 175 IKPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+++..-+++.||||+|||+|.+++++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.75 E-value=0.037 Score=27.24 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=26.4
Q ss_pred EECCE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 31160-6799487399998699994899999994
Q 000540 167 ILKDV-SGIIKPGRLTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 167 iL~~v-s~~i~pG~~~~ilGp~GsGKSTLL~~L~ 199 (1433)
-|+++ .|-+++|+++.|.|+||+|||+|..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.73 E-value=0.002 Score=35.39 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|+|++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.73 E-value=0.0027 Score=34.55 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-++|+|++|+|||||++.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.0028 Score=34.42 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
++|+||||||||||.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.69 E-value=0.0034 Score=33.92 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.|+|+|||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0042 Score=33.30 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9299997469998457985050897
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
|-.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0034 Score=33.89 Aligned_cols=25 Identities=48% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
-+++.||||+||||+.++++..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0026 Score=34.61 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-+.+.||+|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0035 Score=33.81 Aligned_cols=25 Identities=44% Similarity=0.712 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399998699994899999994799
Q 000540 178 GRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
|=-++++|++++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.64 E-value=0.0043 Score=33.24 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.0037 Score=33.66 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-++++|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.0028 Score=34.41 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=16.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+=+++.||||+|||++.++++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.61 E-value=0.0038 Score=33.59 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-+.++|+|||||||+.+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.61 E-value=0.003 Score=34.27 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.60 E-value=0.0035 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=0.0036 Score=33.77 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
-++|+|++|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.59 E-value=0.0026 Score=34.66 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|+|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0043 Score=33.28 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+++|-|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0037 Score=33.64 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-.+||+|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.55 E-value=0.0041 Score=33.37 Aligned_cols=22 Identities=59% Similarity=0.821 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0031 Score=34.18 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99974699984579850508977
Q 000540 888 TALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+.|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0058 Score=32.40 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9981892999974699984579850508
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
|-+.+|.++-+.|++|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.005 Score=32.85 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999746999845798505089
Q 000540 888 TALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++++|.+++|||||++.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0039 Score=33.54 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999974699984579850508977
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
..+.|+||||+||+||++-|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0037 Score=33.70 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0048 Score=32.93 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 99818929999746999845798505089
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
|-++||+++.|.|++|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.50 E-value=0.0047 Score=32.98 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999869999489999999479999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
++..|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.45 E-value=0.0032 Score=34.06 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.43 E-value=0.0046 Score=33.04 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999948999999947999
Q 000540 181 TLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.++|+|||||||+.+.|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.39 E-value=0.0029 Score=34.37 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 799487399998699994899999994799999
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGKLDSS 205 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~ 205 (1433)
..++.+.-++|.|++||||||+|++|.+..++.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999837888999403566257899986530145
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0043 Score=33.24 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++|+|++++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.37 E-value=0.0043 Score=33.26 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999974699984579850508
Q 000540 886 VLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0045 Score=33.11 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.35 E-value=0.0044 Score=33.20 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.0046 Score=33.06 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.34 E-value=0.0051 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 92999974699984579850508977
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.34 E-value=0.005 Score=32.82 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|++.+|||||+++|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.34 E-value=0.0056 Score=32.51 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=14.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999869999489999999479
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++.++|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.33 E-value=0.0045 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999974699984579850508977
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
.++.|.|++||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.004 Score=33.43 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++|+|++|||||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0041 Score=33.39 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99974699984579850508977
Q 000540 888 TALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+.|+||||+|||||++.|+....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.32 E-value=0.0065 Score=32.10 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8739999869999489999999479999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
+...++|.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.30 E-value=0.0059 Score=32.37 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
++++|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0047 Score=33.01 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++||-|++||||||+.+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.29 E-value=0.0071 Score=31.85 Aligned_cols=27 Identities=41% Similarity=0.506 Sum_probs=19.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 487399998699994899999994799
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+.|.++.+.|.|||||||+.+.|.-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.28 E-value=0.0043 Score=33.27 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0065 Score=32.09 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=18.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.|.++++-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.22 E-value=0.0048 Score=32.97 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.006 Score=32.32 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.0053 Score=32.66 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++++|+|++|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.15 E-value=0.0051 Score=32.75 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=17.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.|+-++++.||+||||||.+.++...++
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 4105489876787774477999866625
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.07 E-value=0.0039 Score=33.52 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997469998457985050897
Q 000540 888 TALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0033 Score=34.00 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998699994899999994799
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-.++++|+|++|||||+++|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.07 E-value=0.0063 Score=32.19 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.005 Score=32.82 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8739999869999489999999479999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.+++++|-|+.||||||+++.|+..+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9988999878887799999999999735
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.03 E-value=0.0027 Score=34.56 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
-+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0029 Score=34.32 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.02 E-value=0.0074 Score=31.75 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
-++++|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.01 E-value=0.019 Score=29.06 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=11.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 873999986999948999999947
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
.|.=+++.|+||+|||||...|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999981899998999999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.00 E-value=0.0075 Score=31.72 Aligned_cols=27 Identities=41% Similarity=0.455 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
++|-.+.|+||+||||||+-+.|+.+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.98 E-value=0.025 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.94 E-value=0.0073 Score=31.76 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0062 Score=32.24 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+.|.||+|+|||||+..++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.92 E-value=0.0071 Score=31.85 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.89 E-value=0.0069 Score=31.95 Aligned_cols=28 Identities=43% Similarity=0.401 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+.++.+++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0099 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8739999869999489999999479999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.|.++++-|+.||||||+.+.|+..+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.0093 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=31.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 39999869999489999999479999997211999978507997765329996379988899
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1433)
-+++|.|++||||||+.+.|...+... .....+..++++|.+.+.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 899996899998768999999997304-----------------689965999521568984
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0074 Score=31.76 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 929999746999845798505089
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.-.++|.|+.|||||||++.|...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 328974389999899999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0093 Score=31.11 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.75 E-value=0.0091 Score=31.16 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.75 E-value=0.011 Score=30.53 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=11.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999869999489999999479
Q 000540 178 GRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
+..++++||+|+||||.+--|+..
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.71 E-value=0.0086 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+++|.|++||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.0095 Score=31.06 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++.|+||+||||||+.+.|+...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.59 E-value=0.0095 Score=31.04 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-++||.||+||||||+-+.|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599978999879899999999996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.57 E-value=0.0084 Score=31.39 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 29999746999845798505089778
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKTG 911 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~~ 911 (1433)
..+.+.||+|+|||||.+.|++....
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.012 Score=30.49 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++.||||+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.0091 Score=31.17 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.51 E-value=0.0066 Score=32.06 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+..+.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0091 Score=31.18 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.48 E-value=0.027 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=19.5
Q ss_pred EECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 31160679948739999869999489999999479
Q 000540 167 ILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
-+|. ++....|.=+++.|+||+||||+...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.47 E-value=0.023 Score=28.62 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|-|.+|||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.46 E-value=0.012 Score=30.34 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.016 Score=29.66 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8739999869999489999999479999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.|.++++-|+-||||||+.+.|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.46 E-value=0.009 Score=31.20 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+||+||||||+.+.|+.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.012 Score=30.35 Aligned_cols=22 Identities=45% Similarity=0.869 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.++.||+|+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.44 E-value=0.0095 Score=31.04 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997469998457985050897
Q 000540 888 TALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.43 E-value=0.026 Score=28.30 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=11.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4873999986999948999999947
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-.|.=+++.|+||+||||+...|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999980899998999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.014 Score=29.87 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9981892999974699984579850508
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
|-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.42 E-value=0.011 Score=30.68 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399998699994899999994799
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..-.+.|.||||+|||||+..|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.40 E-value=0.0069 Score=31.93 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998699994899999994799999972119999785079977653299963799888
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI 238 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (1433)
+++|.|++||||||+.+.|...+... | -.++.++|++.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----------~---------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----------G---------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----------T---------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------C---------CCEEEEECCCCCC
T ss_conf 99998999780999999999997156----------9---------9769994777875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.38 E-value=0.01 Score=30.89 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.34 E-value=0.0095 Score=31.06 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.++|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.33 E-value=0.075 Score=25.29 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=28.0
Q ss_pred EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7733029998189299997469998457985050897
Q 000540 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 873 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
..+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3178999999-99999998189999899999999859
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.011 Score=30.58 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.30 E-value=0.011 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
|+.-+.+.||+|+|||.|.++||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.015 Score=29.84 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 92999974699984579850508
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
-+++.++|++||||||+.+-++.
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999989999999997
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.26 E-value=0.013 Score=30.15 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.25 E-value=0.012 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99768982999999999899999999998728998999945843
Q 000540 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1059 (1433)
Q Consensus 1016 ~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps 1059 (1433)
+.+++++||.-. |...+...+.+.+.... ....+|++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCC
T ss_conf 724999424333-45431112210022135-6643000102111
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.23 E-value=0.016 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8189299997469998457985050897
Q 000540 882 FRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 882 i~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-.|.....+.||+|+|||.|.+.|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.22 E-value=0.016 Score=29.52 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|..+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.21 E-value=0.012 Score=30.48 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.018 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+++|-|++|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.02 Score=28.99 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 8739999869999489999999479999997211999978
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1433)
|....+++||+|+|||.|.+.|+..+. ..-+.+|.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECC
T ss_conf 765899977875006999999986336-----77067415
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.16 E-value=0.012 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.16 E-value=0.022 Score=28.72 Aligned_cols=24 Identities=42% Similarity=0.362 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998699994899999994799
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.+.+++||+|+||||.+--||..+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.10 E-value=0.015 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999974699984579850508977
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
-.++|-|+.||||||+++.|+....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.09 E-value=0.016 Score=29.53 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 998189299997469998457985050
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~La 906 (1433)
|-+.+|+++.|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.07 E-value=0.015 Score=29.78 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999971
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.012 Score=30.47 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.02 E-value=0.017 Score=29.44 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|.|.+|||||+++|.|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.015 Score=29.79 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+||+||||||..+.|+...
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.01 E-value=0.015 Score=29.79 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+++++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.99 E-value=0.014 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.019 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 92999974699984579850508977
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.017 Score=29.38 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 18929999746999845798505089
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.90 E-value=0.018 Score=29.25 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.|-++-+.|.||||||||.+.|+.+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.90 E-value=0.018 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999974699984579850508977
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.86 E-value=0.017 Score=29.44 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 818929999746999845798505089
Q 000540 882 FRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 882 i~pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.86 E-value=0.017 Score=29.50 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.86 E-value=0.017 Score=29.48 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.85 E-value=0.0036 Score=33.74 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99974699984579850508
Q 000540 888 TALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag 907 (1433)
++++|.+++|||||++.|.|
T Consensus 3 I~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999958
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.85 E-value=0.025 Score=28.35 Aligned_cols=22 Identities=41% Similarity=0.447 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
++++|.+.+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.021 Score=28.80 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999961
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.81 E-value=0.021 Score=28.84 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=10.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
.++++||+|+||||.+--||.
T Consensus 14 vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEECSCCC----HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.018 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.78 E-value=0.022 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 99981892999974699984579850508
Q 000540 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 879 s~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.|-+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.75 E-value=0.019 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998699994899999994799
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..++++||+|+||||.+--||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.74 E-value=0.077 Score=25.25 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 929999746999845798505089
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
..+++++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.74 E-value=0.016 Score=29.57 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99974699984579850508977
Q 000540 888 TALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+.++|++||||||+-+.|+.+..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.65 E-value=0.01 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.65 E-value=0.023 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 998189299997469998457985050
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~La 906 (1433)
|-+..|.++.+.|++|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.02 Score=28.99 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.57 E-value=0.024 Score=28.52 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.57 E-value=0.03 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=21.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94873999986999948999999947999
Q 000540 175 IKPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+||.++++-|+=|||||||.+.++..+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.56 E-value=0.03 Score=27.81 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=21.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9981892999974699984579850508
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
|-++.|.++-+-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.033 Score=27.62 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
++++|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.49 E-value=0.026 Score=28.20 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699994899999994
Q 000540 180 LTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~ 199 (1433)
+++|.|++||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.46 E-value=0.021 Score=28.79 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.45 E-value=0.028 Score=28.09 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=75.4
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 9998189299997469998457985050897-785599999994902761122334789604888899988889999988
Q 000540 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 957 (1433)
Q Consensus 879 s~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a 957 (1433)
.|-+.+|.++.|.|++|+|||+|..-++-.. ..+. ...|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECC------CCHHHHHHHHH
T ss_conf 689869849999918999999999999999987232-------------------44112126------79999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 7119999999899999999999929965322324698887789988889999999-961997689829999---999998
Q 000540 958 WLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 1033 (1433)
Q Consensus 958 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~-L~~~p~iLlLDEPTs---GLD~~s 1033 (1433)
.+. .+.. +. ...+.....+.. .......+.- -.|... --.+|.+++.|--+. +.+...
T Consensus 75 ~~~----~~~~-------~~-~~~~~~~~~~~~-----~~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWG----MDFE-------EM-ERQNLLKIVCAY-----PESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTS----CCHH-------HH-HHTTSEEECCCC-----GGGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCC----CCHH-------HH-HHCCCEEEEEEE-----CCHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 829----9869-------98-545861799730-----0010179999-9999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHCCEEEEEE
Q ss_conf 999999999987-2899899994584---------389997408899992
Q 000540 1034 AAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMK 1073 (1433)
Q Consensus 1034 a~~i~~~l~~~~-~~g~Tvi~t~Hqp---------s~~i~~~fD~illL~ 1073 (1433)
....+..+.+.+ +.+.+++++.|.. +..+....|.++.|.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.41 E-value=0.022 Score=28.69 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+|++||||||+.+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.39 E-value=0.021 Score=28.79 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.022 Score=28.66 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.03 Score=27.81 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+++|.|++||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.036 Score=27.35 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999986999948999999947999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
..++++||+|+||||.+--||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.32 E-value=0.022 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.03 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.03 Score=27.83 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.075 Score=25.31 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.21 E-value=0.025 Score=28.39 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.025 Score=28.37 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.20 E-value=0.085 Score=24.95 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=26.6
Q ss_pred EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7733029998189299997469998457985050897
Q 000540 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 873 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
..||+... .-.|.-+.++|+||+|||||...|..+-
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 32899999-9999999998089999899999999859
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.032 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.03 Score=27.85 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCHHHH
Q ss_conf 997689829999--999998999999999987289989999458438999740889999269499997899852005899
Q 000540 1016 NPSIIFMDEPTS--GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVS 1093 (1433)
Q Consensus 1016 ~p~iLlLDEPTs--GLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~g~~~~~~~~ 1093 (1433)
.+.++++||+-. .-+......+++... .....++++...+.......+ .+....+.+.++.. ..+..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~---~~~~~ii~i~~~~~~~~~~~l------~~~~~~i~f~~~~~--~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERNLPKMRPF------DRVCLDIQFRRPDA--NSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTTSSTTGGG------TTTSEEEECCCCCH--HHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCCCH--HHHHH
T ss_conf 51377763011111000134677765401---234222111355552113532------44036531145314--67889
Q ss_pred HHHHC
Q ss_conf 98519
Q 000540 1094 YFEAI 1098 (1433)
Q Consensus 1094 yF~~~ 1098 (1433)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.024 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.++||+||||||..+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.03 Score=27.85 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998699994899999994799
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..+.|+||.++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.12 E-value=0.027 Score=28.18 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.08 E-value=0.063 Score=25.79 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.08 E-value=0.0055 Score=32.56 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
-++++|+|++|||||+++|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.029 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9981892999974699984579850508
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
|-+.+|.++.|.|++|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.04 E-value=0.026 Score=28.22 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.045 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.02 E-value=0.027 Score=28.09 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-.+.|+||.||||||+-+.|+.+.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.01 E-value=0.036 Score=27.34 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+++|-|+.||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.99 E-value=0.032 Score=27.69 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.026 Score=28.25 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.031 Score=27.77 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.91 E-value=0.031 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.027 Score=28.14 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.86 E-value=0.027 Score=28.18 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.03 Score=27.85 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899088999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.029 Score=27.90 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.041 Score=27.01 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=26.0
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 7330299981892999974699984579850508977
Q 000540 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 874 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
+|+.++. |=.+++|+|+.++||||||+.|+|...
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9970799---879999889999979999999809987
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.78 E-value=0.02 Score=28.95 Aligned_cols=20 Identities=45% Similarity=0.595 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999988733
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.66 E-value=0.067 Score=25.64 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=14.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399998699994899999994799
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
|.=-++++|...+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97089999724886999999997041
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.035 Score=27.44 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.62 E-value=0.027 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=0.031 Score=27.79 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999869999489999999479
Q 000540 179 RLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
-++.|-|.-||||||||+-+...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.57 E-value=0.031 Score=27.77 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCHHHHHH
Q ss_conf 99768982999999999899999999998728998999945843899974088999926949999789985200589998
Q 000540 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYF 1095 (1433)
Q Consensus 1016 ~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~g~~~~~~~~yF 1095 (1433)
++.++++||-- .+.......+...+..- .....+++++++++. +...+ ..+ -..+.+.|... ..+..+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~l-----~sR-~~~i~~~~~~~--~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEPI-----QSR-CAIFRFRPLRD--EDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHHH-----HHT-EEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHHH-----HCC-CCCCCCCCCCH--HHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-65768-----473-12101233430--4677899
Q ss_pred HHC
Q ss_conf 519
Q 000540 1096 EAI 1098 (1433)
Q Consensus 1096 ~~~ 1098 (1433)
..+
T Consensus 178 ~~~ 180 (231)
T d1iqpa2 178 RYI 180 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 888
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.53 E-value=0.04 Score=27.02 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 929999746999845798505089
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+..++++||+|+||||.+-=||.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.50 E-value=0.032 Score=27.67 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997469998457985050897
Q 000540 888 TALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=0.039 Score=27.13 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 892999974699984579850508977
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
.|..+++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.032 Score=27.65 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.44 E-value=0.042 Score=26.92 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=26.4
Q ss_pred HCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 2398544322598799-9998999999999988813982899994594479
Q 000540 339 VGPALALFMDEISTGL-DSSTTFQIVNCFKQNIHINCGTAVISLLQPAPET 388 (1433)
Q Consensus 339 ~~~~~il~lDEptsgL-Ds~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1433)
+...+++++|+.-.=. +......+...+-.. ...++.++++-..++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~-~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987-631663899548751001
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.032 Score=27.63 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.037 Score=27.25 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+.|+||.||||||+.+.|+.+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.38 E-value=0.026 Score=28.23 Aligned_cols=20 Identities=50% Similarity=0.629 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 15 IvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999878999999844
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.024 Score=28.43 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.035 Score=27.46 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.04 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
++||-|++|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.054 Score=26.23 Aligned_cols=31 Identities=39% Similarity=0.593 Sum_probs=27.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7994873999986999948999999947999
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
|-+++|++|.+.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9966735899805777478999999999987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.27 E-value=0.041 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.045 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8929999746999845798505089
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
|...+.++||+|.|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.046 Score=26.69 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8929999746999845798505089
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.|..+++-|+.||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.038 Score=27.17 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899098999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.03 E-value=0.039 Score=27.11 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-.++++|.+|+|||||++-+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.046 Score=26.65 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.046 Score=26.69 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.035 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.97 E-value=0.048 Score=26.52 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|...||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.96 E-value=0.058 Score=26.03 Aligned_cols=20 Identities=50% Similarity=0.529 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699994899999994
Q 000540 180 LTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~ 199 (1433)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.046 Score=26.67 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.94 E-value=0.047 Score=26.61 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.92 E-value=0.069 Score=25.55 Aligned_cols=35 Identities=31% Similarity=0.223 Sum_probs=26.9
Q ss_pred EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 773302999818929999746999845798505089
Q 000540 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 873 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
..||. +...-.|.=+.+.|+||+|||||.-.|..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.91 E-value=0.054 Score=26.22 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=15.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 81892999974699984579850508
Q 000540 882 FRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 882 i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+-.|+..+|.|++|+|||||+..++.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 45787556867999887899999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.91 E-value=0.049 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.84 E-value=0.036 Score=27.35 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999986999948999999
Q 000540 180 LTLLLGPPASGKTTLLLA 197 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~ 197 (1433)
-++|.|+|||||||.|-.
T Consensus 16 ~~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHH
T ss_conf 989996288438999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=0.061 Score=25.90 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=11.2
Q ss_pred CEEEEEECCCCCCHHHHHH
Q ss_conf 7399998699994899999
Q 000540 178 GRLTLLLGPPASGKTTLLL 196 (1433)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~ 196 (1433)
+.++.|.||||+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHH
T ss_conf 8859997689887521699
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.049 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|++|+|||+|++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.053 Score=26.28 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.77 E-value=0.036 Score=27.37 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf 999974699984579850508977855999999949027611223347896048
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQN 940 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~ 940 (1433)
-+.++||+|+|||-|.+.||+...-- -+..+.-. |-. .|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP----Fv~~daT~-----fTe-aGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP----FIKVEATK-----FTE-VGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC----EEEEEGGG-----GC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC----EEEEECCE-----EEE-CCEEECC
T ss_conf 47998999988999999999873898----89862551-----141-1111044
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.04 Score=27.04 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.73 E-value=0.068 Score=25.59 Aligned_cols=21 Identities=38% Similarity=0.265 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++++|++++|||||+.+|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.73 E-value=0.065 Score=25.69 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997469998457985050
Q 000540 887 LTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~La 906 (1433)
.+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.046 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
.++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.053 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.057 Score=26.07 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.69 E-value=0.057 Score=26.07 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 981892999974699984579850508
Q 000540 881 AFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 881 ~i~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
..+||.+++|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 579982999966877658899999876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.68 E-value=0.052 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|.+|+|||||++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.056 Score=26.09 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999986999948999999947
Q 000540 179 RLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+-++|+|++|||||++++.+.-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 6589990799968999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.098 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.60 E-value=0.048 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-+.+.||+|+|||++.++||..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 7998896999889999998620
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.59 E-value=0.043 Score=26.86 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.51 E-value=0.041 Score=26.96 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=18.8
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 313116067994873999986999948999999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLA 197 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1433)
..+++... |. ++|.|++||||||.|-.
T Consensus 17 ~~~v~~~~-----g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 17 QEAVRTTE-----GP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHCCS-----SC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHCCC-----CC-EEEEECCCCCHHHHHHH
T ss_conf 99982999-----99-89995298668999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.51 E-value=0.054 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+||+|.+.+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.034 Score=27.53 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.055 Score=26.19 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799487399998699994899999994799
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..+-.|+-.+|.|++|+|||||+..++...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 564578755686799988789999999977
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.057 Score=26.05 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.055 Score=26.17 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.48 E-value=0.062 Score=25.84 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 929999746999845798505089
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-..++++||+|+||||.+-=||.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.043 Score=26.87 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999974699984579850508
Q 000540 886 VLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
-.++|+|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.43 E-value=0.04 Score=27.02 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9997469998457985050897
Q 000540 888 TALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.083 Score=25.04 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-.+|+||||.|||++...++.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.36 E-value=0.065 Score=25.71 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699994899999994
Q 000540 180 LTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~ 199 (1433)
.++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.36 E-value=0.044 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.34 E-value=0.058 Score=26.02 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
.++++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.079 Score=25.17 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999869999489999999479999
Q 000540 179 RLTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.061 Score=25.90 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.05 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.058 Score=26.01 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.073 Score=25.36 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.059 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.13 E-value=0.076 Score=25.27 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8189299997469998457985050897
Q 000540 882 FRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 882 i~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+|.-.+|++|.-.||||||++.|.|..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.13 E-value=0.058 Score=26.01 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 929999746999845798505089
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
..+++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.064 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.06 E-value=0.074 Score=25.35 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9299997469998457985050897
Q 000540 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.05 E-value=0.16 Score=23.28 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCC---CCCCCEEEEEEEECCC
Q ss_conf 2999974699984579850508---9778559999999490
Q 000540 886 VLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGY 923 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag---~~~~~~~~G~i~i~g~ 923 (1433)
-.+.++|.+|+|||||++-+.. ..+-|...-.+.+++.
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~ 47 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKV 47 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCE
T ss_conf 77999989999889999989509827888867899997769
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=0.058 Score=26.01 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999746999845798505089
Q 000540 888 TALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
..+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.061 Score=25.87 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999746999845798505089
Q 000540 888 TALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++++|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.01 E-value=0.062 Score=25.84 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99997469998457985050
Q 000540 887 LTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~La 906 (1433)
.+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.059 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.97 E-value=0.066 Score=25.64 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.95 E-value=0.087 Score=24.91 Aligned_cols=28 Identities=43% Similarity=0.528 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4873999986999948999999947999
Q 000540 176 KPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
+|.-..+++||+|+|||.+.+.|+..+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.95 E-value=0.075 Score=25.30 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999869999489999999
Q 000540 180 LTLLLGPPASGKTTLLLAL 198 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1433)
.++++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.91 E-value=0.079 Score=25.17 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
-++++|.+.+|||||+++|.+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899995889809999999999
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.88 E-value=0.1 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=17.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8739999869999489999999479
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
+..+++|.|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8408999779978889999999985
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.82 E-value=0.1 Score=24.48 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999948999999947
Q 000540 180 LTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G 200 (1433)
+++|.|+.||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.072 Score=25.43 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.057 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.085 Score=24.97 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.054 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.73 E-value=0.076 Score=25.25 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHH----HHH-CCCEEEEEECCCCHHHHHHCCEEEEEE--CCCEEEE
Q ss_conf 619976898299999999989------999999999----872-899899994584389997408899992--6949999
Q 000540 1014 VANPSIIFMDEPTSGLDARAA------AIVMRTVRN----TVD-TGRTVVCTIHQPSIDIFEAFDELFLMK--RGGYEIY 1080 (1433)
Q Consensus 1014 ~~~p~iLlLDEPTsGLD~~sa------~~i~~~l~~----~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~--~GG~~vy 1080 (1433)
...|.|||+||--.=...+.. ..+...+.. ... .+.-||+|+++|.. .|.-++ . +=.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred ECCCCCCCCHHHHHHHHC
Q ss_conf 789985200589998519
Q 000540 1081 VGPLGRHSCHLVSYFEAI 1098 (1433)
Q Consensus 1081 ~G~~g~~~~~~~~yF~~~ 1098 (1433)
.+++... .-...++..
T Consensus 169 ~~~P~~~--~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDAT--GRLEILQIH 184 (258)
T ss_dssp CCCCCHH--HHHHHHHHT
T ss_pred CCCCCHH--HHHHHHHHH
T ss_conf 8999988--999873220
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.079 Score=25.16 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.67 E-value=0.066 Score=25.65 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1892999974699984579850508
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+|--.+|++|..++|||||++.|..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971999994789849999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.66 E-value=0.05 Score=26.44 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.068 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.56 E-value=0.063 Score=25.77 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 39999869999489999999---479999
Q 000540 179 RLTLLLGPPASGKTTLLLAL---AGKLDS 204 (1433)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L---~G~~~~ 204 (1433)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 29999958989989999999996485340
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.54 E-value=0.076 Score=25.28 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.53 E-value=0.069 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.50 E-value=0.061 Score=25.87 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.071 Score=25.45 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|++|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.38 E-value=0.077 Score=25.25 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.074 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.24 E-value=0.087 Score=24.90 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.12 Score=24.09 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
..++-||||+||||+.++++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59888899875899999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.073 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.083 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
++.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.08 E-value=0.066 Score=25.67 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-.+||+|.+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.089 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999489999999479
Q 000540 181 TLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
++++|.+|+|||+|++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=0.081 Score=25.10 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCHHHHHH
Q ss_conf 99768982999999999899999999998728998999945843899974088999926949999789985200589998
Q 000540 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYF 1095 (1433)
Q Consensus 1016 ~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~g~~~~~~~~yF 1095 (1433)
+.+++++||.-. +...+...+...+.... ..+.++++.++.+. +... +.++ -..+.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 519
Q 000540 1096 EAI 1098 (1433)
Q Consensus 1096 ~~~ 1098 (1433)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.091 Score=24.77 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.85 E-value=0.11 Score=24.33 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECC
Q ss_conf 999986999948999999947999999721199997850799776532999637
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q 233 (1433)
-.+.+||+|+|||-|.+.||..++. .-+.++ ++++ ...+|+..
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~~-----~~ir~D---~s~~---~e~gyvg~ 112 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLDI-----PIAISD---ATSL---TEAGYVGE 112 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEE---GGGC---C-------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-----CEEEHH---HHHC---CCCHHHHH
T ss_conf 3244189986378999999864435-----331112---2201---44316676
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.13 Score=23.71 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-.++.||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.086 Score=24.91 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.70 E-value=0.15 Score=23.36 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999986999948999999947999
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+-.++|+|-|-+|||||+|.|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.62 E-value=0.1 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHC
Q ss_conf 299997469998457985050
Q 000540 886 VLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~La 906 (1433)
-++.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.58 E-value=0.11 Score=24.29 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CCC
Q ss_conf 999986999948999999947-999
Q 000540 180 LTLLLGPPASGKTTLLLALAG-KLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G-~~~ 203 (1433)
.++++|.+|+|||+|++.+.. ..+
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~ 28 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFP 28 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999995989999999729999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.099 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.29 E-value=0.09 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.11 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.14 Score=23.61 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.+++||||.|||++...|+.++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3998358754479999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.03 E-value=0.12 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.00 E-value=0.11 Score=24.25 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+++.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.12 Score=23.90 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.13 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.12 Score=23.92 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.++++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.85 E-value=0.1 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.57 E-value=0.12 Score=24.07 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 97689829999999998999999999987289989999458438999740889999269499997899852005899985
Q 000540 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFE 1096 (1433)
Q Consensus 1017 p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~g~~~~~~~~yF~ 1096 (1433)
.+++++||.- .+.......+.+.+..... ...++++.+++. .+... +..+ ...+.+-|+.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCCC
T ss_conf 1899996632-0002378999988631120-023201267087-75999-----9988-75401235652--00011021
Q ss_pred HC
Q ss_conf 19
Q 000540 1097 AI 1098 (1433)
Q Consensus 1097 ~~ 1098 (1433)
.+
T Consensus 169 ~I 170 (227)
T d1sxjc2 169 NV 170 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 22
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.50 E-value=0.13 Score=23.86 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999974699984579850508977
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
-++.|-|.=|||||||++-|.....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.39 E-value=0.15 Score=23.41 Aligned_cols=29 Identities=38% Similarity=0.595 Sum_probs=25.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79948739999869999489999999479
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
|-++.|+++.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.29 E-value=0.082 Score=25.06 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
...+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.13 E-value=0.27 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.115 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.98 E-value=0.15 Score=23.40 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699994899999994799
Q 000540 181 TLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
.+|+|+||.|||+++..|+.++
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 7687999988999999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.98 E-value=0.25 Score=22.00 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=17.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 998189299997469998457985050
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~La 906 (1433)
..+-.|+..+|.|++|+|||||+.-++
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 563678877766799989899999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.91 E-value=0.13 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-.++|+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.90 E-value=0.15 Score=23.43 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.16 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
+++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.73 E-value=0.12 Score=24.04 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1892999974699984579850508
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
+|.-.+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.73 E-value=0.12 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999746999845798505089
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.58 E-value=0.2 Score=22.57 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999948999999947
Q 000540 181 TLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~G 200 (1433)
.+++|...+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99993789898999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.56 E-value=0.21 Score=22.38 Aligned_cols=31 Identities=45% Similarity=0.699 Sum_probs=27.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7994873999986999948999999947999
Q 000540 173 GIIKPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
|-++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.52 E-value=0.22 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 679948739999869999489999999479
Q 000540 172 SGIIKPGRLTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
=..+-.|+..+|.|++|+|||||+.-++..
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 256367887776679998989999999998
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.37 E-value=0.17 Score=23.09 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 189299997469998457985050897
Q 000540 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 883 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
+|.....++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.12 E-value=0.16 Score=23.17 Aligned_cols=48 Identities=4% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 619976898299999-999989999999999872899899994584389
Q 000540 1014 VANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1061 (1433)
Q Consensus 1014 ~~~p~iLlLDEPTsG-LD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~ 1061 (1433)
..+..+|++|+--.= -+......+...+......|+.+|+|+..|..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.09 E-value=0.19 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999746999845798505089
Q 000540 887 LTALMGVSGAGKTTLMDVLAGR 908 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~ 908 (1433)
.++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.08 E-value=0.19 Score=22.74 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|..|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.70 E-value=0.16 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 892999974699984579850508977
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
.+..+.+.||+|+|||++..+|++...
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 767699989999888999999999859
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.50 E-value=0.16 Score=23.15 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=23.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94873999986999948999999947999
Q 000540 175 IKPGRLTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
-.|.-..++.||||+|||.|.++|++...
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 36886388877998508899999999863
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.32 E-value=0.22 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999948999999947999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLD 203 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~ 203 (1433)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.17 E-value=0.2 Score=22.60 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99997469998457985050897
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
....+||+|+|||-|.+.||...
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 32441899863789999998644
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.93 E-value=0.22 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299997469998457985050897
Q 000540 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.74 E-value=0.23 Score=22.19 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699994899999994
Q 000540 181 TLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L~ 199 (1433)
++|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.14 E-value=0.33 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89299997469998457985050897
Q 000540 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~~Lag~~ 909 (1433)
.+-.++++|.+.+|||||+|.|.|++
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.88 E-value=0.34 Score=21.09 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=9.8
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999746999845798505
Q 000540 887 LTALMGVSGAGKTTLMDVL 905 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~L 905 (1433)
.++++|.-++|||||++.|
T Consensus 5 Ni~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
T ss_conf 8999944799999999999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.82 E-value=0.27 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.+.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.75 E-value=0.28 Score=21.60 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999974699984579850508
Q 000540 886 VLTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 886 ~~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.++||.|.-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.73 E-value=0.22 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999489999999479999
Q 000540 180 LTLLLGPPASGKTTLLLALAGKLDS 204 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~~~ 204 (1433)
.+.|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.58 E-value=0.25 Score=21.97 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 873999986999948999999947
Q 000540 177 PGRLTLLLGPPASGKTTLLLALAG 200 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~L~G 200 (1433)
|.=-++++|..++|||||+..|..
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 951899994479999999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.49 E-value=0.31 Score=21.38 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999489999999479
Q 000540 180 LTLLLGPPASGKTTLLLALAGK 201 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~ 201 (1433)
.++++|..|+|||||++-+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998889999988408
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.40 E-value=0.33 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999974699984579850508
Q 000540 887 LTALMGVSGAGKTTLMDVLAG 907 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag 907 (1433)
.+.++|.+|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.31 E-value=0.15 Score=23.41 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.3
Q ss_pred EECCEEEEEECCCCCCHHH
Q ss_conf 9487399998699994899
Q 000540 175 IKPGRLTLLLGPPASGKTT 193 (1433)
Q Consensus 175 i~pG~~~~ilGp~GsGKST 193 (1433)
+++|+.++|.+|+|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred HHCCCCEEEEECCCCCHHH
T ss_conf 6469949999799997879
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=84.12 E-value=0.28 Score=21.61 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699994899999994799
Q 000540 180 LTLLLGPPASGKTTLLLALAGKL 202 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~G~~ 202 (1433)
+..+.||+++||||++++|...+
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998589887789999999983
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.53 E-value=0.21 Score=22.44 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 246988877899888899999999619976898299999999989999999999872899899994584
Q 000540 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058 (1433)
Q Consensus 990 ~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqp 1058 (1433)
++-.||.-.++++-..=+. +.+-.+++. .+..|+-+.|...+..+.+ .+..+++.+...
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viNKi 158 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVINKV 158 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEECH
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEECC
T ss_conf 9737873889999998875-----237249998-6566820469999999987----699869998772
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.23 E-value=0.33 Score=21.15 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=16.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48739999869999489999
Q 000540 176 KPGRLTLLLGPPASGKTTLL 195 (1433)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL 195 (1433)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.20 E-value=0.16 Score=23.20 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999974699984579850508977
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
-+.|.|+.|+|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.84 E-value=0.27 Score=21.76 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999974699984579850508977
Q 000540 887 LTALMGVSGAGKTTLMDVLAGRKT 910 (1433)
Q Consensus 887 ~~ai~G~sGaGKTTLl~~Lag~~~ 910 (1433)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.60 E-value=0.35 Score=21.04 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=13.8
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8739999869999489999
Q 000540 177 PGRLTLLLGPPASGKTTLL 195 (1433)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL 195 (1433)
.|...+..|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.55 E-value=0.27 Score=21.70 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=9.1
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999746999845798505
Q 000540 888 TALMGVSGAGKTTLMDVL 905 (1433)
Q Consensus 888 ~ai~G~sGaGKTTLl~~L 905 (1433)
++++|.-++|||||++.|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.43 E-value=0.34 Score=21.08 Aligned_cols=20 Identities=45% Similarity=0.742 Sum_probs=16.8
Q ss_pred CCCEEEEECCCCCCHHHHHH
Q ss_conf 89299997469998457985
Q 000540 884 PGVLTALMGVSGAGKTTLMD 903 (1433)
Q Consensus 884 pG~~~ai~G~sGaGKTTLl~ 903 (1433)
.|+.....|.||.|||||-.
T Consensus 13 ~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCCEEEEECCCCCCCCCCCC
T ss_conf 99889997368798142210
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.97 E-value=0.47 Score=20.22 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699994899999994
Q 000540 180 LTLLLGPPASGKTTLLLALA 199 (1433)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L~ 199 (1433)
-++++|..++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.46 E-value=0.75 Score=18.91 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=13.1
Q ss_pred CCEEEEECCCCCCHHH-HHHHH
Q ss_conf 9299997469998457-98505
Q 000540 885 GVLTALMGVSGAGKTT-LMDVL 905 (1433)
Q Consensus 885 G~~~ai~G~sGaGKTT-Ll~~L 905 (1433)
|.+..++||=.||||| |++.+
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRL 23 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 3799999150678999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.37 E-value=0.38 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.7
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 998189299997469998457985050
Q 000540 880 GAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1433)
Q Consensus 880 ~~i~pG~~~ai~G~sGaGKTTLl~~La 906 (1433)
..+..|+..+|.|++|+|||+|+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 676678778765688888589999999
|