Citrus Sinensis ID: 000541
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.986 | 0.746 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.989 | 0.996 | 0.718 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.982 | 0.739 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.985 | 0.977 | 0.713 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.997 | 0.980 | 0.698 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.997 | 0.980 | 0.697 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.994 | 0.982 | 0.686 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.985 | 0.964 | 0.698 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.980 | 0.711 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.974 | 0.950 | 0.693 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2232 bits (5784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1061/1421 (74%), Positives = 1224/1421 (86%), Gaps = 7/1421 (0%)
Query: 13 SLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEA 72
SLR S SIWR+N + FS SSR +EDDEEALKWAALEKLPT++RL+KG+L S+G A
Sbjct: 21 SLRANSNSIWRNNGVEI--FSRSSR-DEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAA 77
Query: 73 NEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEA 132
EVD+ +LG QER+ ++++LVKVAD DNE+FLLKLKNRIDRVGI LPTIEVR+EHLN++A
Sbjct: 78 AEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDA 137
Query: 133 EAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPA 192
+AYVGSR+LPTF NF N +E LNS++IL SRK+ LTILKD+SGII+P RMTLLLGPP+
Sbjct: 138 DAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPS 197
Query: 193 SGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 252
SGKTTLLLALAGKLD +L+V+G+V+YNGH++ EFVPQRTAAYISQHD HIGEMTVRETL
Sbjct: 198 SGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLE 257
Query: 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312
FSARCQGVGSR EML+ELSRREKAA IKPD DID++MKAAATEGQEA+VVTDY+LKILGL
Sbjct: 258 FSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGL 317
Query: 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
D+CADTMVGD+M+RGISGGQKKRVTTGEM+VGP++ALFMDEISTGLDSSTT+ IVNSLRQ
Sbjct: 318 DICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQ 377
Query: 373 SIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKG 432
S+ ILKGT +ISLLQPAPETY+LFDDIIL+SDG IVYQGPR+ VLEFF+ MGF+CP+RKG
Sbjct: 378 SVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKG 437
Query: 433 VADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSH 492
VADFLQEVTS+KDQ+QYW + EPYRF+T KEFA+A+Q F++G+K+GDEL PFDK K H
Sbjct: 438 VADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCH 497
Query: 493 RAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552
AALT + YG+ KKELLK C RELLLMKRNSFVY+FK QLTIM L+ MTLFFRT+M R
Sbjct: 498 PAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPR 557
Query: 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILK 612
D+ DG IY GALFF+V+MIMFNGM+E+ MTI KLP+FYKQRDL F+PSWAYA+ +WILK
Sbjct: 558 DTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILK 617
Query: 613 IPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVAN 672
IP++ +EV +WV LTYYVIGFDPN+ R +Q+LLL+ +NQMAS +FR I A GR + VA+
Sbjct: 618 IPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVAS 677
Query: 673 TFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT 732
TFGSFALLL F LGGFVLSR+D+K WWIW YW SP+MY+ N+I+VNEF G W ++P
Sbjct: 678 TFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGG 737
Query: 733 TEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQES 792
E LG V+KSRGFF +AYWYW+G+GAL GF ++FNF ++LAL++LNPF K QAV+ ++
Sbjct: 738 NETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDG 797
Query: 793 QSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMM 852
+ N + I + G S +E + N K+GMVLPF+PHSITFD++ YSVDMPQEM
Sbjct: 798 E-NAENGEVSSQITSTDGGDSISESQNN---KKGMVLPFEPHSITFDDVVYSVDMPQEMK 853
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912
G ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGY
Sbjct: 854 EQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGY 913
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
PKKQETFARISGYCEQNDIHSP VTVYESL+YSAWLRLP +VD TRKMF++EVMELVEL
Sbjct: 914 PKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVEL 973
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
PLR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN
Sbjct: 974 GPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1033
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSK 1092
TVDTGRTVVCTIHQPSIDI EAFDELFL+KRGGQEIYVG LGRHS HLIKYFE GV+K
Sbjct: 1034 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAK 1093
Query: 1093 IKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFA 1152
IK+GYNPATWMLEVTA +QE LGIDF ++YK+S+LYRRNKALI ++ P PGSKDLHF
Sbjct: 1094 IKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFE 1153
Query: 1153 TQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDL 1212
TQY+QSF+TQC+ACLWKQHWSYWRNP Y+AVRF+FTT IAL FGTMFWD+GTK K QDL
Sbjct: 1154 TQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDL 1213
Query: 1213 FNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIF 1272
NAMGSMY AVLFLGVQNA+SVQPVV+IERTVFYRERAAGMYSA+PYAF Q IEIPYIF
Sbjct: 1214 LNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIF 1273
Query: 1273 VQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFA 1332
VQSV YG+IVYAMIGFEW KF WY F MFFTLLYFT+YGMM VA+TPN +++ IVA
Sbjct: 1274 VQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAF 1333
Query: 1333 FYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLESGETVEQFL 1392
FYG+WN+FSGFIIPR R+P+WWRWYYWA PV+WTLYGLVASQFGDIQ +L ETVEQFL
Sbjct: 1334 FYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQFL 1393
Query: 1393 RSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
R +FGFKHDFLGVVAAV+ A+ +FA FA IK FNFQ+R
Sbjct: 1394 RRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2200 bits (5701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1030/1433 (71%), Positives = 1229/1433 (85%), Gaps = 15/1433 (1%)
Query: 4 GNKVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKG 63
G ++ASNS+R S S+W+ +S FS SSR EEDDEEAL+WAALEKLPT++RL+KG
Sbjct: 3 GTSFHQASNSMRRNS-SVWKKDSGR-EIFSRSSR-EEDDEEALRWAALEKLPTFDRLRKG 59
Query: 64 ILTSSR--GEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTI 121
ILT+S G NE+D+ LG Q+ ++++++L+KV D ++E+ L KLK RIDRVGI LPTI
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 122 EVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRP 181
EVRF+HL VEAE +VG RALPTF NF +N + FLN+++++P+RKK TIL DVSGI++P
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 182 GRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNH 241
GRM LLLGPP+SGKTTLLLALAGKLD L+ +GRVTYNGH M+EFVPQRTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASV 301
IGEMTVRET A++AR QGVGSR++ML+EL+RREK A IKPDPDID+FMKA +T G++ +V
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 302 VTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSS 361
+TDYILKILGL+VCADTMVGD+MLRGISGGQKKRVTTGEM+VGP++ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 362 TTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFK 421
TT+QIVNSLR +HI GT LISLLQPAPET++LFDDIILI++G+I+Y+GPR+HV+EFF+
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 422 FMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDE 481
MGF+CP RKGVADFLQEVTS+KDQ QYW ++EPYRF+ V+EFA+AFQ F++G+++GDE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 482 LRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVA 541
L +PFDK KSH AALTTK YGV KEL+K SRE LLMKRNSFVY FK QL +M +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 542 MTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPS 601
MTLFFRT+M + + DG +YTGALFFI++M+MFNGM+E+ MTIAKLP+FYKQRDL FYP+
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 602 WAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLI 661
W Y+L W+LKIPIS++E A+ F+TYYVIGFDPNVGRLF+QY+LL+ +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 662 AATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFL 721
AA GRN++VANTFG+FA+L+ F LGG VLSR+DIKKWWIW YW SP+MY QNAI+ NEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 722 GNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPF 781
G+SW + + N++E LGV LKSRGF AYWYW+G GAL GF++LFNFGFTLAL+FLN
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 782 GKNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEI 841
GK QAVI++E S+E + + S RS+ V+A +KKRGMVLPF+PHSITFD +
Sbjct: 780 GKPQAVIAEEPASDETELQ---------SARSEGVVEAGANKKRGMVLPFEPHSITFDNV 830
Query: 842 AYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 901
YSVDMPQEM+ G ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 831 VYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 890
Query: 902 YISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM 961
YI G+I ISGYPK Q+TFARISGYCEQ DIHSP+VTVYESL+YSAWLRLP EVD RK+
Sbjct: 891 YIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKI 950
Query: 962 FIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
FIEEVMELVEL PLRQALVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 951 FIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1010
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLI 1081
AAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFLLKRGG+EIYVG LG S+HLI
Sbjct: 1011 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLI 1070
Query: 1082 KYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISK 1141
YFE I+G++KI +GYNPATWMLEV+ SQE ALG+DFA +YK+SELY+RNK LIK++S+
Sbjct: 1071 NYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQ 1130
Query: 1142 PAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWD 1201
PAPGSKDL+F TQY+QSF TQCMA LWKQHWSYWRNPPY+AVRFLFT IAL FGTMFWD
Sbjct: 1131 PAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWD 1190
Query: 1202 MGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAF 1261
+G KTK +QDL NAMGSMYTAVLFLG+QNAASVQPVV++ERTVFYRE+AAGMYSA+PYAF
Sbjct: 1191 LGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAF 1250
Query: 1262 AQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTP 1321
AQ IEIPY+ VQ++ YG+IVYAMIGFEWTA KF WY FFM+ + L FT+YGMMAVAMTP
Sbjct: 1251 AQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTP 1310
Query: 1322 NHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDR 1381
NHHI+ +V+ AFYG+WN+FSGF+IPR +P+WW WYYW CPV+WTLYGL+ASQFGDI +
Sbjct: 1311 NHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEP 1370
Query: 1382 L-ESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
+ +S +V+QF+R F+G++ FLGVVAA+ FP+LFA+IFA+GIK FNFQKR
Sbjct: 1371 MADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2140 bits (5546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1052/1422 (73%), Positives = 1236/1422 (86%), Gaps = 11/1422 (0%)
Query: 13 SLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEA 72
S+R S SIWR+N A + FS S+R +EDDEEALKWAALEKLPTY+RL+KGIL S+G A
Sbjct: 25 SIRENSNSIWRNNGAEV--FSRSAR-DEDDEEALKWAALEKLPTYDRLRKGILFGSQGAA 81
Query: 73 NEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEA 132
EVDV + G ER+ ++++LVKVAD DNE+FLLKLKNRIDRVGI P+IEVRFEHLN++A
Sbjct: 82 AEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDA 141
Query: 133 EAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPA 192
+AYVGSRALPTF NF +N +EG L+S++ILPS+K+ +TILKDVSGI++P RMTLLLGPP
Sbjct: 142 DAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPG 201
Query: 193 SGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 252
SGKTTLLLALAGKLDS+L+V+G+VTYNGH++ EFVPQRTAAYISQHD HIGEMTVRETL
Sbjct: 202 SGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLE 261
Query: 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312
FSARCQGVGSR+EML+ELSRREKAA IKPD DID+FMKAA+TEGQEA VVTDYILKILGL
Sbjct: 262 FSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGL 321
Query: 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
D+CADTMVGD+M+RGISGGQKKRVTTGEM+VGP++ALFMDEISTGLDSSTT+ IVNSL+Q
Sbjct: 322 DICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQ 381
Query: 373 SIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKG 432
S+ I+KGT LISLLQPAPETY+LFDDIIL+SDG IVY+GPRE VLEFF+ MGF+CP+RKG
Sbjct: 382 SVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKG 441
Query: 433 VADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSH 492
ADFLQEVTS+KDQ+QYW+ ++EPYRF+T KEFA+A+Q F++G+KV DEL+ FDK KSH
Sbjct: 442 AADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSH 501
Query: 493 RAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552
AALTT+ YG+ K++LLK C RELLLM+RNSFVY+FK QL I+ L+ MT+FFRTKM R
Sbjct: 502 PAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPR 561
Query: 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILK 612
DS DG IY+GALFF+V+MIMFNG++E+PMT+ KLP+FYKQRD FYPSWAYA+ +WILK
Sbjct: 562 DSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILK 621
Query: 613 IPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVAN 672
IP+++ EV +WVFLTYYV+GFDPNVGR F+Q+LLLL +NQMASALFR IAA GR + VA+
Sbjct: 622 IPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVAS 681
Query: 673 TFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT 732
TFG+FALLL F LGGF+L+R D+K WWIW YW SPLMY+ NAI+VNEF G W+ ++
Sbjct: 682 TFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGG 741
Query: 733 TEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQES 792
TEPLG V+++RGFF DAYWYW+G+GALAGFI++FN +++AL++LNPF K QA IS ES
Sbjct: 742 TEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDES 801
Query: 793 QSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMM 852
++NE ++ Q++++ + A+ +KK+GMVLPF PHSITFDE+ YSVDMP EM
Sbjct: 802 ENNESESSP----QITSTQEGDS---ASENKKKGMVLPFDPHSITFDEVVYSVDMPPEMR 854
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912
G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGY
Sbjct: 855 ESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGY 914
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
PKKQ+TFARISGYCEQNDIHSP VTV+ESL+YSAWLRLP +V+ R MF+EEVM+LVEL
Sbjct: 915 PKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVEL 974
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
PLR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRN
Sbjct: 975 TPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 1034
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSK 1092
TVDTGRTVVCTIHQPSIDI EAFDELFL+KRGGQEIYVG LGR S HLIKYFE I GVSK
Sbjct: 1035 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSK 1094
Query: 1093 IKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFA 1152
I +GYNPATWMLEVTA SQE ALG+DF D+YK S+LYRRNKALI ++S P PG+ DLHF
Sbjct: 1095 IVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFD 1154
Query: 1153 TQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDL 1212
++++Q F+TQCMACLWKQHWSYWRNP Y+AVR +FTT IAL FGTMFWD+GTK + QDL
Sbjct: 1155 SEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDL 1214
Query: 1213 FNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIF 1272
NAMGSMY AVLFLGVQN++SVQPVVS+ERTVFYRE+AAGMYSA+PYAFAQ LIEIPYIF
Sbjct: 1215 VNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIF 1274
Query: 1273 VQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFA 1332
VQ+ YG+IVY+MIGFEWT AKF W FFMFFT LYFT++GMM VA+TPN +++ IVA
Sbjct: 1275 VQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGF 1334
Query: 1333 FYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRL-ESGETVEQF 1391
FY +WN+FSGFI+PR RIPIWWRWYYW CP++WTLYGLVASQFGD+QD L + +TVEQF
Sbjct: 1335 FYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQF 1394
Query: 1392 LRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
LRS FGFKHDFLGVVAAV+ AF V+FA FA+GIK FNFQ+R
Sbjct: 1395 LRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2104 bits (5452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1020/1430 (71%), Positives = 1206/1430 (84%), Gaps = 18/1430 (1%)
Query: 18 STSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANEVDV 77
+ S WR S AF S R EEDDEEALKWAA+EKLPTY+R++KGILT+ G EVD+
Sbjct: 19 TASSWRGTSGRSDAFGRSVR-EEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVDI 75
Query: 78 CNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVG 137
LG QER+ +I++LV+ A+ DNE FLLKL++R++RVGI PTIEVRFE+L+++AEAYVG
Sbjct: 76 GGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVG 135
Query: 138 SRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTT 197
+R +PTF NF +N I L+++ I+ S K+ ++IL D+SGIIRPGRM+LLLGPP SGKT+
Sbjct: 136 NRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTS 195
Query: 198 LLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 257
LLLALAGKLDS+L+VSGRVTYNGHDMDEFVPQRT+AYI QHD HIGEMTVRETLAFSARC
Sbjct: 196 LLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARC 255
Query: 258 QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD 317
QGVG+R++ML+ELSRREK A IKPDPDIDV+MKA + EGQE SVVTDYILKILGL++CAD
Sbjct: 256 QGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICAD 314
Query: 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHIL 377
TMVGD M+RGISGGQKKRVTTGEM+VGPA+ALFMDEISTGLDSSTT+QIVNSLRQS+HIL
Sbjct: 315 TMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHIL 374
Query: 378 KGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
GT LI+LLQPAPETYDLFDDI+L+S+GQIVYQGPRE++LEFF+ MGF+CP+RKGVADFL
Sbjct: 375 GGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFL 434
Query: 438 QEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALT 497
QEVTSRKDQ QYW ++EPYR+++V +F++AF+ F++G+ +G ELR+PFD+ ++H AALT
Sbjct: 435 QEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALT 494
Query: 498 TKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITD 557
T YG+SK EL KAC SRE LLMKRNSFVYIFK+ QL I+G + MT+F RTKMHR S+ D
Sbjct: 495 TSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVED 554
Query: 558 GVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISY 617
G I+ GA+F ++ +FNG AE+ M+IAKLPIFYKQRDL FYPSWAYAL TW+LKIPIS+
Sbjct: 555 GAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISF 614
Query: 618 IEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSF 677
+E AVW+ +TYYV+GFDPN+ R FR Y+LL+ ++QMAS LFRL+AA GR +VVA+TFGSF
Sbjct: 615 LECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSF 674
Query: 678 ALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT--TEP 735
A L+L VLGGF++SRE+IKKWWIW YW SPLMYAQNAI VNEFLG+SW KV+ T +
Sbjct: 675 AQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDT 734
Query: 736 LGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSN 795
LGVQVLK RG F DA WYW+G+GAL G+I+LFN F L L +L+P GK QAV+S+E
Sbjct: 735 LGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELRE 794
Query: 796 EHDNRTGGTIQLSTSGRS-----------KAEVKANHHKKRGMVLPFKPHSITFDEIAYS 844
+H NRTG ++L T G + E+ +KRGMVLPF P SITFD I YS
Sbjct: 795 KHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYS 854
Query: 845 VDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 904
VDMPQEM GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 855 VDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 914
Query: 905 GSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIE 964
G I ISGYPKKQETFARI+GYCEQNDIHSP+VTVYESLLYSAWLRLP EVDS RKMF+E
Sbjct: 915 GDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVE 974
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
EVMELVEL LR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 975 EVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1034
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084
IVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFL+KRGG+EIYVG LG +S HLI YF
Sbjct: 1035 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYF 1094
Query: 1085 EGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAP 1144
EGI+GV KIKDGYNPATWMLEVT +QE LGI+FA++Y++S+LY+RNK LI ++S P P
Sbjct: 1095 EGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPP 1154
Query: 1145 GSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGT 1204
GS DLHF TQ++Q FFTQCMACLWKQH SYWRNP Y+A R FTT+IAL FGT+F ++G
Sbjct: 1155 GSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGK 1214
Query: 1205 KTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQA 1264
K K+ DLFN++GSMY AVLF+G+QN +VQP+V +ERTVFYRE+AAGMYSALPYAFAQ
Sbjct: 1215 KINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQV 1274
Query: 1265 LIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHH 1324
LIEIP+IF+Q+V YG+IVY++IGF+WT KF WY FFMFFT +YFT+YGMMAVAMTPN
Sbjct: 1275 LIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSD 1334
Query: 1325 ISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDR-LE 1383
I+ IV+ AFY +WN+F+GF+IPR RIPIWWRWY WACPV+WTLYGLVASQ+GDI + LE
Sbjct: 1335 IAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLE 1394
Query: 1384 SGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
GE V+ ++R +FGF+HD+LG VA V F LFA +FA IKVFNFQ+R
Sbjct: 1395 DGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2093 bits (5422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1020/1461 (69%), Positives = 1185/1461 (81%), Gaps = 32/1461 (2%)
Query: 1 MESGNKVYKASN-----SLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLP 55
M++ ++ K ++ S+R S S+WR FS SSR EEDDEEAL+WAALEKLP
Sbjct: 1 MDAAGEIQKVASMRLGGSMRGDSGSMWRRGD---DVFSRSSR-EEDDEEALRWAALEKLP 56
Query: 56 TYNRLKKGIL-------TSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLK 108
TY+R+++ IL G VDV LGP+ER+ ++++LV+VAD DNE+FLLKLK
Sbjct: 57 TYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLK 116
Query: 109 NRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKH 168
+R+DRVGI +PTIEVRFEHL EAE VG+ LPT N N +E N++ ILP+RK+
Sbjct: 117 DRVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQT 176
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ +L DVSGII+P RMTLLLGPP SGKTTLLLALAG+L L+ SG+VTYNGH M+EFVP
Sbjct: 177 MPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVP 236
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+RTAAYISQHD HIGEMTVRETLAFSARCQGVGSR +ML+ELSRREKAA IKPD DID F
Sbjct: 237 ERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAF 296
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
MKAAA GQEA+V TDYILKILGL++CADTMVGDEMLRGISGGQ+KRVTTGEM+VGPA+A
Sbjct: 297 MKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARA 356
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
LFMDEISTGLDSSTTFQIVNSLRQ++HIL GT +ISLLQPAPETY+LFDDIIL+SDGQIV
Sbjct: 357 LFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIV 416
Query: 409 YQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADA 468
YQGPRE VLEFF+ MGF+CP RKGVADFLQEVTS+KDQ QYW ++PYRFVTVKEF A
Sbjct: 417 YQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSA 476
Query: 469 FQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYI 528
FQ F+ G+ + +EL +PFDK KSH AAL T YG KELLKA + RE+LLMKRNSFVY+
Sbjct: 477 FQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYM 536
Query: 529 FKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLP 588
F+ QL ++ L+AMTLFFRTKM RDS+T G IY GALFF VLMIMFNG +E+ +T+ KLP
Sbjct: 537 FRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLP 596
Query: 589 IFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLL 648
+F+KQRDL FYP+W+Y + +WILKIPI++IEV +VFLTYYVIGFD NVG F+QYLL+L
Sbjct: 597 VFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLML 656
Query: 649 FLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPL 708
+NQMA +LFR I RN++VAN F SF LL+ VLGGF+L+RE +KKWWIW YW SP+
Sbjct: 657 AINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPM 716
Query: 709 MYAQNAIVVNEFLGNSWRKVLPNT--TEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILL 766
MYAQNAI VNE +G+SW K++ ++ E LGVQVLKSRG F +A WYW+G GA+ GF +L
Sbjct: 717 MYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTIL 776
Query: 767 FNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTG---GTIQLSTSGRSKAEVKANHHK 823
FN FTLAL++L P+G ++ +S+E + N G G + LS+ + +
Sbjct: 777 FNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTEND 836
Query: 824 -----------KRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFR 872
+RGMVLPF P S++FD + YSVDMPQEM GV +D+L LL GVSG+FR
Sbjct: 837 STIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFR 896
Query: 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIH 932
PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGYPKKQETFAR+SGYCEQNDIH
Sbjct: 897 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIH 956
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992
SP VTVYESLL+SAWLRLP +VDS TRKMFIEEVMELVEL LR ALVGLPGV+GLSTEQ
Sbjct: 957 SPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQ 1016
Query: 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIV 1052
RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDI
Sbjct: 1017 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIF 1076
Query: 1053 EAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQE 1112
EAFDELFL+KRGG+EIY G LG HSS LIKYFE I GVSKIKDGYNPATWMLEVT QE
Sbjct: 1077 EAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQE 1136
Query: 1113 TALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHW 1172
ALG+DF+DIYK SELY+RNKALIKD+S+PAP S DL+F TQY+QS TQCMACLWKQ+
Sbjct: 1137 QALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNL 1196
Query: 1173 SYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAA 1232
SYWRNPPY+AVRF FTT+IAL FGT+FWD+G K K QDLFNAMGSMY AVLF+GV N
Sbjct: 1197 SYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCT 1256
Query: 1233 SVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTA 1292
SVQPVV++ERTVFYRERAAGMYSA PYAF Q +IEIPY VQ+ YG+IVYAMIGFEWTA
Sbjct: 1257 SVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTA 1316
Query: 1293 AKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPI 1352
AKF WY FFM FTLLYFT+YGMMAV +TPN+HI+ IV+ AFY +WN+FSGF+IPR R+PI
Sbjct: 1317 AKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPI 1376
Query: 1353 WWRWYYWACPVSWTLYGLVASQFGDIQDRLESGETVEQFLRSFFGFKHDFLGVVAAVVFA 1412
WWRWY WACPV+WTLYGLV SQFGDI+ +E G V+ F+ ++FGFKH +LG VA VV A
Sbjct: 1377 WWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAA 1436
Query: 1413 FPVLFALIFAVGIKVFNFQKR 1433
F LFA +F I FNFQKR
Sbjct: 1437 FAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2090 bits (5415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1019/1461 (69%), Positives = 1184/1461 (81%), Gaps = 32/1461 (2%)
Query: 1 MESGNKVYKASN-----SLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLP 55
M++ ++ K ++ S+R S S+WR FS SSR EEDDEEAL+WAALEKLP
Sbjct: 1 MDAAGEIQKVASMRLGGSMRGDSGSMWRRGD---DVFSRSSR-EEDDEEALRWAALEKLP 56
Query: 56 TYNRLKKGIL-------TSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLK 108
TY+R+++ IL G VDV LGP+ER+ ++++LV+VAD DNE+FLLKLK
Sbjct: 57 TYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLK 116
Query: 109 NRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKH 168
+R+DRVGI +PTIEVRFEHL EAE VG+ LPT N N +E N++ ILP+RK+
Sbjct: 117 DRVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQT 176
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ +L DVSGII+P RMTLLLGPP SGKTTLLLALAG+L L+ SG+VTYNGH M+EFVP
Sbjct: 177 MPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVP 236
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+RTAAYISQHD HIGEMTVRETLAFSARCQGVGSR +ML+ELSRREKAA IKPD DID F
Sbjct: 237 ERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAF 296
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
MKAAA GQEA+V TDYILKILGL++CADTMVGDEMLRGISGGQ+KRVTTGEM+VGPA+A
Sbjct: 297 MKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARA 356
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
LFMDEISTGLDSSTTFQIVNSLRQ++HIL GT +ISLLQPAPETY+LFDDIIL+SDGQIV
Sbjct: 357 LFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIV 416
Query: 409 YQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADA 468
YQGPRE VLEFF+ GF+CP RKGVADFLQEVTS+KDQ QYW ++PYRFVTVKEF A
Sbjct: 417 YQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSA 476
Query: 469 FQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYI 528
FQ F+ G+ + +EL +PFDK KSH AAL T YG KELLKA + RE+LLMKRNSFVY+
Sbjct: 477 FQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYM 536
Query: 529 FKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLP 588
F+ QL ++ L+AMTLFFRTKM RDS+T G IY GALFF VLMIMFNG +E+ +T+ KLP
Sbjct: 537 FRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLP 596
Query: 589 IFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLL 648
+F+KQRDL FYP+W+Y + +WILKIPI++IEV +VFLTYYVIGFD NVG F+QYLL+L
Sbjct: 597 VFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLML 656
Query: 649 FLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPL 708
+NQMA +LFR I RN++VAN F SF LL+ VLGGF+L+RE +KKWWIW YW SP+
Sbjct: 657 AINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPM 716
Query: 709 MYAQNAIVVNEFLGNSWRKVLPNT--TEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILL 766
MYAQNAI VNE +G+SW K++ ++ E LGVQVLKSRG F +A WYW+G GA+ GF +L
Sbjct: 717 MYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTIL 776
Query: 767 FNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTG---GTIQLSTSGRSKAEVKANHHK 823
FN FTLAL++L P+G ++ +S+E + N G G + LS+ + +
Sbjct: 777 FNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTEND 836
Query: 824 -----------KRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFR 872
+RGMVLPF P S++FD + YSVDMPQEM GV +D+L LL GVSG+FR
Sbjct: 837 STIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFR 896
Query: 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIH 932
PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGYPKKQETFAR+SGYCEQNDIH
Sbjct: 897 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIH 956
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992
SP VTVYESLL+SAWLRLP +VDS TRKMFIEEVMELVEL LR ALVGLPGV+GLSTEQ
Sbjct: 957 SPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQ 1016
Query: 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIV 1052
RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDI
Sbjct: 1017 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIF 1076
Query: 1053 EAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQE 1112
EAFDELFL+KRGG+EIY G LG HSS LIKYFE I GVSKIKDGYNPATWMLEVT QE
Sbjct: 1077 EAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQE 1136
Query: 1113 TALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHW 1172
ALG+DF+DIYK SELY+RNKALIKD+S+PAP S DL+F TQY+QS TQCMACLWKQ+
Sbjct: 1137 QALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNL 1196
Query: 1173 SYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAA 1232
SYWRNPPY+AVRF FTT+IAL FGT+FWD+G K K QDLFNAMGSMY AVLF+GV N
Sbjct: 1197 SYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCT 1256
Query: 1233 SVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTA 1292
SVQPVV++ERTVFYRERAAGMYSA PYAF Q +IEIPY VQ+ YG+IVYAMIGFEWTA
Sbjct: 1257 SVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTA 1316
Query: 1293 AKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPI 1352
AKF WY FFM FTLLYFT+YGMMAV +TPN+HI+ IV+ AFY +WN+FSGF+IPR R+PI
Sbjct: 1317 AKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPI 1376
Query: 1353 WWRWYYWACPVSWTLYGLVASQFGDIQDRLESGETVEQFLRSFFGFKHDFLGVVAAVVFA 1412
WWRWY WACPV+WTLYGLV SQFGDI+ +E G V+ F+ ++FGFKH +LG VA VV A
Sbjct: 1377 WWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAA 1436
Query: 1413 FPVLFALIFAVGIKVFNFQKR 1433
F LFA +F I FNFQKR
Sbjct: 1437 FAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2084 bits (5400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 996/1450 (68%), Positives = 1195/1450 (82%), Gaps = 25/1450 (1%)
Query: 6 KVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGIL 65
+V++ ++ R GS +WRS S + E+DDEEAL+WAALE+LPTY+R+++GIL
Sbjct: 4 EVHRMASLRREGS--MWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGIL 61
Query: 66 TSSR------GEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLP 119
S GE EVDV LG +E + +I++LV+ AD D+E FLLKL+ R+DRVGI P
Sbjct: 62 AVSSEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYP 121
Query: 120 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGII 179
TIEVRFE+L VEA+ +VG+R LPT N N +E N+++ILP++K+ +T+L DVSGII
Sbjct: 122 TIEVRFENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGII 181
Query: 180 RPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHD 239
+P RMTLLLGPP SGKTTLLLALAGKLD L+VSG+VTYNGH M EFVP+RTAAYISQHD
Sbjct: 182 KPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHD 241
Query: 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEA 299
HIGEMTVRETLAFSARCQGVG+R+EML+EL+RREKAA IKPD DID++MKA+A GQE+
Sbjct: 242 LHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQES 301
Query: 300 SVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLD 359
SVVTDYILKILGLD+CADT+VG+EMLRGISGGQ+KRVTTGEM+VGPA+ALFMDEISTGLD
Sbjct: 302 SVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLD 361
Query: 360 SSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEF 419
SSTT+QIVNSLRQ+IHIL GT +ISLLQPAPETY+LFDDIIL+SDGQ+VYQGPREHVLEF
Sbjct: 362 SSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEF 421
Query: 420 FKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVG 479
F+FMGF CP RKGVADFLQEVTSRKDQ QYW ++ PYRFV VK+FADAF+ F++G+ +
Sbjct: 422 FEFMGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQ 481
Query: 480 DELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGL 539
+EL PFD+ +SH AAL T YGVS+KELLKA + RELLLMKRN+F+YIFK LT+M L
Sbjct: 482 NELSEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMAL 541
Query: 540 VAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFY 599
+ MT FFRT M D G+IY GAL+F + +MFNG AE+ MT+ KLP+F+KQRDL F+
Sbjct: 542 IVMTTFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFF 600
Query: 600 PSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFR 659
P+WAY + +WIL+IPI+++EV V+VF+TYYVIGFDP+V R F+QYLLLL LNQM+SALFR
Sbjct: 601 PAWAYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFR 660
Query: 660 LIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNE 719
IA GR++VV++TFG +LL LGGF+L+R D+KKWWIW YW SPL YAQNAI NE
Sbjct: 661 FIAGIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNE 720
Query: 720 FLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLN 779
FLG+SW ++LP LGV VLKSRG FT+A WYW+GLGAL G+ LLFN +T+ALS L+
Sbjct: 721 FLGHSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLS 780
Query: 780 PFGKNQAVISQESQSNEHDNRTGGTIQLSTSGRS-KAEVKANH--------------HKK 824
PF + A +S+++ +H N TG ++ +S K E++ +H +
Sbjct: 781 PFTDSHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASR 840
Query: 825 RGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884
+GMVLPF P SI+F+++ YSVDMP+ M G+ ED+L+LL GVSG+FRPGVLTALMGVSG
Sbjct: 841 KGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSG 900
Query: 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLY 944
AGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL++
Sbjct: 901 AGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVF 960
Query: 945 SAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVA 1004
SAWLRLP EVDS RKMFIEEVM+LVEL LR ALVGLPGVSGLSTEQRKRLTIAVELVA
Sbjct: 961 SAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVA 1020
Query: 1005 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
NPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDI EAFDELFL+KRG
Sbjct: 1021 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1080
Query: 1065 GQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYK 1124
G+EIYVG +G++SS LI+YFEGI GVS+IKDGYNPATWMLEVT+ +QE LG+DF++IY+
Sbjct: 1081 GEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYR 1140
Query: 1125 SSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVR 1184
SELY+RNK LI+++S P PGS DL+F TQY++SF TQC+ACLWKQ+WSYWRNP Y+AVR
Sbjct: 1141 QSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVR 1200
Query: 1185 FLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTV 1244
LFT +IAL FGTMFW++GT+TKKQQDLFNAMGSMY AVL++GVQN+ SVQPVV +ERTV
Sbjct: 1201 LLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTV 1260
Query: 1245 FYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFF 1304
FYRERAAGMYSA PYAF Q IE+PYI VQ++ YGV+VY+MIGFEWT AKFLWY FFM+F
Sbjct: 1261 FYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYF 1320
Query: 1305 TLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVS 1364
TLLYFT+YGMMAV +TPN I+ I++ AFY +WN+FSG++IPR +IP+WWRWY W CPV+
Sbjct: 1321 TLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVA 1380
Query: 1365 WTLYGLVASQFGDIQDRLESG-ETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAV 1423
WTLYGLVASQFGDIQ LE TV QF+ +FGF H+FL VVA V F V FA +F+
Sbjct: 1381 WTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSF 1440
Query: 1424 GIKVFNFQKR 1433
I FNFQ+R
Sbjct: 1441 AIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2069 bits (5361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1435 (69%), Positives = 1182/1435 (82%), Gaps = 23/1435 (1%)
Query: 22 WRSNSATLGAFSMSSRGE--EDDEEALKWAALEKLPTYNRLKKGIL-------TSSRGEA 72
W +++ SS GE EDDEEAL+WAALEKLPTY+R+++ +L
Sbjct: 30 WSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGK 89
Query: 73 NEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEA 132
VDV +LGPQER+ ++++LV+VA+ DNE FLLKLK RIDRVGI +PTIEVRFEHL EA
Sbjct: 90 KVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEA 149
Query: 133 EAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPA 192
E VG+ LPT N N +EG N++ ILP++K+ + IL DVSGI++P RMTLLLGPP
Sbjct: 150 EVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPG 209
Query: 193 SGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 252
SGKTTLLLALAG+L ++ SG+VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+
Sbjct: 210 SGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLS 269
Query: 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312
FSARCQGVGSR +ML+ELSRREKAA IKPD DID FMKA+A EGQE +++TDYILKILGL
Sbjct: 270 FSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGL 329
Query: 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
D+CADTMVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV SLRQ
Sbjct: 330 DICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQ 389
Query: 373 SIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKG 432
+IHIL GT +ISLLQPAPETYDLFDDIIL+SDGQIVYQGPRE VLEFF+ MGF+CP+RKG
Sbjct: 390 AIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKG 449
Query: 433 VADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSH 492
VADFLQEVTSRKDQ+QYW+ ++PYR+V VK+FA AFQ F+ G+ + +EL PFDK K+H
Sbjct: 450 VADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNH 509
Query: 493 RAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552
AALTT YGVS ELLKA + RE LLMKRNSFVYIF+ CQL ++ +AMT+FFRTKMHR
Sbjct: 510 PAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHR 569
Query: 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILK 612
DS+TDGVI+ GALFF V+MIMFNG++E+P+TI KLP+F+KQRDL F+P+W Y + +WILK
Sbjct: 570 DSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILK 629
Query: 613 IPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVAN 672
IP+S+IEV +VF++YYVIGFDP+ GR F+QYLL+L +NQMA+ALFR + RN++VAN
Sbjct: 630 IPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVAN 689
Query: 673 TFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPN- 731
FGSF LL+ VLGGF+L RE +KKWWIW YW SP+MYAQNAI VNEFLG+SW KVL N
Sbjct: 690 VFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNS 749
Query: 732 -TTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQ 790
+ E LGVQ L+SRG F +A WYW+G GAL GFI+LFN FTLAL++L P+GK+Q +S+
Sbjct: 750 LSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSE 809
Query: 791 ESQSNEHDNRTGGTIQLSTSGRS-----------KAEVKANHH-KKRGMVLPFKPHSITF 838
E + N G + + T S +E+ N +RGMVLPF P S+TF
Sbjct: 810 EELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSLTF 869
Query: 839 DEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 898
D I YSVDMPQEM G++ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 870 DNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 929
Query: 899 TGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPT 958
TGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP +VDS T
Sbjct: 930 TGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNT 989
Query: 959 RKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
RKMFIEEVMELVEL PLR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 990 RKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
Query: 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSS 1078
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFL+KRGG+EIYVG LG SS
Sbjct: 1050 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSS 1109
Query: 1079 HLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKD 1138
LIKYFEGI+GVS+IKDGYNPATWMLEV+ SQE ALG+DF DIY+ SEL++RNKALI++
Sbjct: 1110 ELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQE 1169
Query: 1139 ISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTM 1198
+S P PGS +L+F T+Y+ SF QC+ACLWK H SYWRNPPY+A+R FTT+IAL FGT+
Sbjct: 1170 LSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTI 1229
Query: 1199 FWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALP 1258
FWD+G KT K QDLFNAMGSMY+AVLF+GV N+ SVQPVVS+ERTVFYRERAAGMYSA P
Sbjct: 1230 FWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFP 1289
Query: 1259 YAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVA 1318
YAF Q IE PY VQS+ YG+IVY+MIGF+WTAAKF WY FFMFFT LYFT+YGMMAV
Sbjct: 1290 YAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVG 1349
Query: 1319 MTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDI 1378
+TP++H++ IV+ AFYG+WN+FSGFIIPR ++PIWWRWY W CPV+WTLYGLVASQFGDI
Sbjct: 1350 LTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI 1409
Query: 1379 QDRLESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
++ G V+ F+ ++F FKH +LGVVA V+ AF +LFA +F I NFQKR
Sbjct: 1410 MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2064 bits (5348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1012/1423 (71%), Positives = 1196/1423 (84%), Gaps = 10/1423 (0%)
Query: 18 STSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANEVDV 77
S S WRS S T F SSR EEDDEEALKWAALEKLPTY+RL+KGI+T GE EVD+
Sbjct: 22 SVSAWRSPS-TSDVFGRSSR-EEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDI 79
Query: 78 CNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVG 137
LG QER+ +++KLV+ A+ DNE FLLKL+NR++RVGI PTIEVRFEHLN+ AEA+VG
Sbjct: 80 QGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVG 139
Query: 138 SRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTT 197
+R +PT NF N L++++++PS K+ ++IL DVSGII+P RMTLLLGPP +GKTT
Sbjct: 140 NRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTT 199
Query: 198 LLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 257
LLLALAGKLD++L+V+G VTYNGH M EFVPQRT+AYISQHD HIGEMTVRETLAFS+RC
Sbjct: 200 LLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRC 259
Query: 258 QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD 317
QGVG+R+EML+ELSRREK A IKPDPD+DV+MKA A EGQE SVVTDYILKILGLD+CAD
Sbjct: 260 QGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICAD 318
Query: 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHIL 377
TMVGD M+RGISGGQKKRVTTGEM+VGP++ALFMDEISTGLDSSTTFQIVNSLRQS+HIL
Sbjct: 319 TMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHIL 378
Query: 378 KGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
GT LI+LLQPAPETYDLFDDI+L+SDGQIVYQGPRE+VLEFF+ MGF+CP+RKGVADFL
Sbjct: 379 GGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFL 438
Query: 438 QEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALT 497
QEVTSRKDQ+QYWV + EPYRFV V EF++AF+ F++G K+ +EL PFD+ ++H AALT
Sbjct: 439 QEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALT 498
Query: 498 TKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITD 557
T YG+SK ELLKAC+ RE LLMKRNSFVYIFK+ QL ++ L+AMT+FFRTK+ R+ + D
Sbjct: 499 TSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLED 558
Query: 558 GVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISY 617
I+ GA+F ++ +FNG AE+ M+IAKLP+FYKQRDL FYP WAYAL TWILKIPIS+
Sbjct: 559 ATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISF 618
Query: 618 IEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSF 677
+E VW+ +TYYVIGFDPNV R+FR YLLL+ ++Q+AS LFRL+AA GR++VVA+TFG+F
Sbjct: 619 VECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAF 678
Query: 678 ALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLG 737
A L+L VLGGF+++RE IKK+WIW YW SPLMYAQNAI VNEFLG+SW K++ T + LG
Sbjct: 679 AQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLG 738
Query: 738 VQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEH 797
+ L++RG F D WYW+G+GAL G+++LFNF F L L +L+P GK Q +S+E+ +
Sbjct: 739 ERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKE 798
Query: 798 DNRTGGTIQLSTSGRS------KAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEM 851
NRTG ++L+T G + E++ + ++K+GMVLPF P SITFD + YSVDMPQEM
Sbjct: 799 ANRTGANVELATRGSAATSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEM 858
Query: 852 MRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911
GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G I ISG
Sbjct: 859 KDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISG 918
Query: 912 YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
YPK QETFARISGYCEQNDIHSP+VTVYESLLYSAWLRLP EVD RKMF++EVM+LVE
Sbjct: 919 YPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVE 978
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
LN LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VR
Sbjct: 979 LNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 1038
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVS 1091
NTVDTGRTVVCTIHQPSIDI EAFDELFL+KRGG+EIYVG LGR SSHLIKYFE I GV
Sbjct: 1039 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVK 1098
Query: 1092 KIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHF 1151
KIK+ YNPATWMLEVT SQE LG++FA++Y++S+LY+RNK LIK++S P PGSKDL F
Sbjct: 1099 KIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFF 1158
Query: 1152 ATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQD 1211
ATQ++QSF QC+ACLWKQH SYWRNP Y+A R FT +IAL FGT+FWD+G K D
Sbjct: 1159 ATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLD 1218
Query: 1212 LFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYI 1271
L NAMGSMY AVLF+G+QNA +VQP+V +ERTVFYRE+AAGMYSALPYA+AQ LIE+P+I
Sbjct: 1219 LINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHI 1278
Query: 1272 FVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAF 1331
VQ++ YG++VY+MIGF+WTAAKFLWY FFMFFT LYFTYYGMMAVAMTPN I+ IVA
Sbjct: 1279 LVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAA 1338
Query: 1332 AFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRL-ESGETVEQ 1390
AFY +WN+F+GFIIPR RIPIWWRWYYWACPV+WTLYGLV SQFG+ D + + ETV+
Sbjct: 1339 AFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKD 1398
Query: 1391 FLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
FLR F GF+HDFL VV +V F VLFA IFA IK NFQ+R
Sbjct: 1399 FLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2053 bits (5318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1422 (69%), Positives = 1159/1422 (81%), Gaps = 26/1422 (1%)
Query: 37 RGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANE-----------VDVCNLGPQER 85
RGEEDDEEAL+WAAL+KLPTY+R++ IL GE E VDV +LGP ER
Sbjct: 48 RGEEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHER 107
Query: 86 QRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFF 145
+ ++++LV+VAD DNE FLLKLK RI RVGI +PTIEVRFEHL VEAE VG+ +PT
Sbjct: 108 RALLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVL 167
Query: 146 NFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 205
N N IE N++ ILP+RK+ L IL D+SGII+P RMTLLLGPP SGKTT LLALAG+
Sbjct: 168 NSITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGR 227
Query: 206 LDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHE 265
L L+ SG+VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+FSARCQGVGSR +
Sbjct: 228 L-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFD 286
Query: 266 MLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325
ML+EL+RREKAA IKPD D+D FMKA+A EGQE++++TDYILKILGL++CADTMVGD+M+
Sbjct: 287 MLTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMV 346
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
RGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV SLRQ+IHIL GT +ISL
Sbjct: 347 RGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISL 406
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKD 445
LQPAPETYDLFDDIIL+SDG IVYQGPRE+VLEFF+ MGF+CP+RKGVADFLQEVTSRKD
Sbjct: 407 LQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKD 466
Query: 446 QEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSK 505
Q+QYW ++PYR+V +KEFA AFQ F+ G+ + +EL PFDK KSH AALTT YGVS
Sbjct: 467 QKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSA 526
Query: 506 KELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGAL 565
ELLKA + RELLL+KRNSFVYIF+ QL + +AMT+FFRTKMHRDS+ DGVI+ GAL
Sbjct: 527 MELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGAL 586
Query: 566 FFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVF 625
FF V+MIM NG++E+P+TI KLP+F+KQRDL F+P+W Y + +WILK P+S+IEV + F
Sbjct: 587 FFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCF 646
Query: 626 LTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVL 685
++YYVIGFDPNVGR F+QYLL+L ++QMA+ALFR + RN++VAN FGSF LL+ VL
Sbjct: 647 MSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVL 706
Query: 686 GGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT--TEPLGVQVLKS 743
GGF+L+R+ + KWWIW YW SP+MYAQNA+ VNEFLG+SW KVL N+ E LGVQ L S
Sbjct: 707 GGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMS 766
Query: 744 RGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGG 803
RG F +A WYW+G GAL GFI+LFN FTLAL++L P GK+Q IS+E + N G
Sbjct: 767 RGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGN 826
Query: 804 TIQLSTSGRSK-----------AEVKANHH-KKRGMVLPFKPHSITFDEIAYSVDMPQEM 851
+ + T S +E+ N +RGMVLPF P S+TF++I YSVDMPQEM
Sbjct: 827 VLDVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEM 886
Query: 852 MRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911
G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG
Sbjct: 887 KAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISG 946
Query: 912 YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
YPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP +VDS TRKMFIEEVMELVE
Sbjct: 947 YPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVE 1006
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
L PLR ALVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR
Sbjct: 1007 LKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVS 1091
NTV+TGRTVVCTIHQPSIDI EAFDELFL+KRGG+EIYVG LG HSS LIKYFEGI+GVS
Sbjct: 1067 NTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVS 1126
Query: 1092 KIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHF 1151
KI DGYNPATWMLEVT SQE AL +DF DIY+ SEL++RNKALI+++S P PGS +L+F
Sbjct: 1127 KITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYF 1186
Query: 1152 ATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQD 1211
TQY+QSF QC+ACLWKQH SYWRNPPY+A+R FTT+IAL FGT+FWD+G K + QD
Sbjct: 1187 PTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQD 1246
Query: 1212 LFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYI 1271
LFNAMGSMY AVLF+GV N SVQPVVS+ERTVFYRERAAGMYSALPYAF Q IE PY
Sbjct: 1247 LFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYT 1306
Query: 1272 FVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAF 1331
VQSV Y +IVY+MIGF+WT AKF WY FFMFFTLLYFT+YGMMAV +TP++H++ IV+
Sbjct: 1307 LVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSS 1366
Query: 1332 AFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLESGETVEQF 1391
AFY +WN+F+GF+I R P+WWRWY W CPV+WTLYGL+ SQ+GDI ++ G V F
Sbjct: 1367 AFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVF 1426
Query: 1392 LRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
+ ++F FKH +LG VA V+ AF +LFA +F I NFQKR
Sbjct: 1427 VENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | ||||||
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.991 | 0.997 | 0.777 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.995 | 0.997 | 0.774 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.993 | 0.997 | 0.754 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.992 | 0.997 | 0.751 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.990 | 0.995 | 0.774 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.984 | 0.449 | 0.765 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.991 | 0.966 | 0.753 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.991 | 0.979 | 0.761 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.992 | 0.995 | 0.767 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.986 | 0.860 | 0.767 | 0.0 |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2327 bits (6031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/1436 (77%), Positives = 1280/1436 (89%), Gaps = 15/1436 (1%)
Query: 1 MESGNKVYKASNSLRIGSTSIWRSNSATLG--AFSMSSRGEEDDEEALKWAALEKLPTYN 58
MESG +Y+A +S+R G++S SN+A FS+SS G++DDEEALKWAALEKLPTY+
Sbjct: 1 MESG-YLYRAGSSVRRGNSSGTFSNNAAADHQVFSLSSHGQDDDEEALKWAALEKLPTYD 59
Query: 59 RLKKGILTSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISL 118
RL+KGILT+S G A+EV+V NLG QER+ ++++LV VA+ DNE+FLLKLKNRIDRVGI +
Sbjct: 60 RLRKGILTTSTGAASEVEVQNLGFQERKNLVERLVNVAEEDNEKFLLKLKNRIDRVGIHV 119
Query: 119 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGI 178
PTIEVRFEHLNVEAEAYVGSRALPTFFN+ N++EG LN ++IL SRKKH+ ILKDVSGI
Sbjct: 120 PTIEVRFEHLNVEAEAYVGSRALPTFFNYSVNMLEGVLNYLHILSSRKKHMWILKDVSGI 179
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH 238
I+P RMTLLLGPP+SGKTTLLLALAGKLD +L+ SGRVTYNGH+MDEFVPQRTAAYISQH
Sbjct: 180 IKPSRMTLLLGPPSSGKTTLLLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQH 239
Query: 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQE 298
D HIGEMTVRETLAFSARCQGVGSR++ML+ELSRREK AGIKPDPDIDVFMKAAATEGQE
Sbjct: 240 DLHIGEMTVRETLAFSARCQGVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQE 299
Query: 299 ASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGL 358
SVV DYILK+LGL+VCADT+VGDEMLRGISGGQKKRVTTGEM+VGPA+ALFMDEISTGL
Sbjct: 300 DSVVIDYILKVLGLEVCADTLVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGL 359
Query: 359 DSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418
DSSTT+QIVNS++Q + IL+GT LISLLQPAPETYDLFDDIIL+SDG+IVYQGPREHVL
Sbjct: 360 DSSTTYQIVNSIKQYVQILEGTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLR 419
Query: 419 FFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKV 478
FF++MGF+CP RKGVADFLQEVTSRKDQ QYW ++ PYRFVTVKEFA+AF F+ G+++
Sbjct: 420 FFEYMGFKCPARKGVADFLQEVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRL 479
Query: 479 GDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMG 538
G+EL +PFDK K+H AALTTK YGV+K+EL KA SRE LLMKRNSFVY FK QLTI+
Sbjct: 480 GNELAVPFDKSKNHPAALTTKKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVA 539
Query: 539 LVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRF 598
++AMTLF RT+MHRDS+TDG IY GA+FFIV++IMFNGMAEI MT+AKLP+FYKQRDL F
Sbjct: 540 VIAMTLFLRTEMHRDSVTDGGIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLF 599
Query: 599 YPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALF 658
+P+W YAL TWILKIPI++IEVA+ VF+TY+VIGFDPNVGRLF+ YL+LL NQMAS LF
Sbjct: 600 FPAWIYALPTWILKIPITFIEVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLF 659
Query: 659 RLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVN 718
R IAA GRN+VVANTFGSF LLLLFVLGGFVLSR+DIKKWWIW +W SP+MYAQNA+VVN
Sbjct: 660 RTIAAVGRNMVVANTFGSFVLLLLFVLGGFVLSRDDIKKWWIWGFWTSPMMYAQNAVVVN 719
Query: 719 EFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFL 778
EFLG SW VLPN+TEPLG++VLKSRGFFT+AYWYWL + AL GF LL+NF + LAL+FL
Sbjct: 720 EFLGKSWNHVLPNSTEPLGIEVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFL 779
Query: 779 NPFGK-NQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSIT 837
NP GK QA IS+E QSN D GRSK+ + +K+RG+++PF+PHSIT
Sbjct: 780 NPLGKPQQAGISEEPQSNNVDE----------IGRSKSS-RFTCNKQRGVIIPFEPHSIT 828
Query: 838 FDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 897
FD++ YSVDMPQEM GV EDKLVLL GVSGAFRPGVLTALMG+SGAGKTT+MDVLAGR
Sbjct: 829 FDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTMMDVLAGR 888
Query: 898 KTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSP 957
KTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP++TVYESLLYSAWLRLP EVD
Sbjct: 889 KTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVYESLLYSAWLRLPTEVDIE 948
Query: 958 TRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
TRKMF+EEVMELVELNPLRQALVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 949 TRKMFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1008
Query: 1018 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHS 1077
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFLLKRGGQEIYVG LGR S
Sbjct: 1009 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRLS 1068
Query: 1078 SHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIK 1137
HLIKYFEGI GV+KIKDGYNPATWMLEVT+ ++E ALG+DFA+IY+SSEL+RRN+ALIK
Sbjct: 1069 CHLIKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDFAEIYRSSELFRRNRALIK 1128
Query: 1138 DISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGT 1197
D+S PAPGSKDL+F+TQY++SFFTQC+ACLWKQHWSYWRNPPY+A+RFL TT+I L FGT
Sbjct: 1129 DLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPPYTAIRFLSTTVIGLIFGT 1188
Query: 1198 MFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSAL 1257
MFWD+G+K K+QDLFNAMGSMYTAVLFLGVQNAASVQPVV++ERTVFYRERAAGMYSAL
Sbjct: 1189 MFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVAVERTVFYRERAAGMYSAL 1248
Query: 1258 PYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAV 1317
PYAFAQ LIE+PYIFVQ+ YGVIVY+MIGF WT +KF WY +FM+FTLLYFT+YGMMAV
Sbjct: 1249 PYAFAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFWYLYFMYFTLLYFTFYGMMAV 1308
Query: 1318 AMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGD 1377
A++PNH I+ +++ AFYG+WNVFSGF+IPR+R+P+WWRWY W CPV WTLYGLVASQFGD
Sbjct: 1309 AVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWYSWICPVFWTLYGLVASQFGD 1368
Query: 1378 IQDRLESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
++DRLE+GETVEQF+ + FKHDFLGVVAAV+ F VLFA+ FA+ IK+FNFQ+R
Sbjct: 1369 MKDRLETGETVEQFVTIYLDFKHDFLGVVAAVILGFTVLFAITFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2322 bits (6018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1109/1431 (77%), Positives = 1263/1431 (88%), Gaps = 5/1431 (0%)
Query: 4 GNKVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDD-EEALKWAALEKLPTYNRLKK 62
G ++Y A SLR G +SIWRSN+ + FS SSRG+EDD EEALKWAA+E+LPTY+RLKK
Sbjct: 3 GTELYIAGGSLRRGESSIWRSNA--MEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLKK 60
Query: 63 GILTSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIE 122
G+LT+S+GEANE+DV NLG E++ ++D+LVKVA+ DNE FLLKLKNRIDRVGI LP IE
Sbjct: 61 GLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMIE 120
Query: 123 VRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPG 182
VRFEHLNVE EA+VGSRALPTFFNF +I+EGFLN ++ILPS KK L+IL+DVSGII+P
Sbjct: 121 VRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKPK 180
Query: 183 RMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHI 242
RMTLLLGPP+SGKTTLLLALAGKLD L+ SGRVTYNGH+M+EFVPQRTAAYISQHD HI
Sbjct: 181 RMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHI 240
Query: 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVV 302
GEMTVRETLAF+ARCQGVG R+EM+SEL RREKA+ IKPDPDIDVFMKA ATEGQEA+VV
Sbjct: 241 GEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVV 300
Query: 303 TDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSST 362
TDYILKILGL+VCAD MVG+EMLRG+SGGQ+KRVTTGEM+VGPA+ALFMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSST 360
Query: 363 TFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKF 422
T+QIVNS++Q IHIL GT +ISLLQP PETY+LFDDIIL+SDGQIVYQGPRE+VLEFF++
Sbjct: 361 TYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEY 420
Query: 423 MGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDEL 482
MGF+CP+RKGVADFLQEVTSRKDQ QYW K++PY FVTV+EFA+AFQ F +G+++ EL
Sbjct: 421 MGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAEL 480
Query: 483 RIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAM 542
PFDK KSH AALTTK YGV K ELLKAC SRE+LLMKRNSFVYIFKL QLTIM +VAM
Sbjct: 481 STPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAM 540
Query: 543 TLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSW 602
TLF RT+MHRDS+T+G IY GALFF V+ IMFNG++EI +TIAKLP+FYKQR L FYP W
Sbjct: 541 TLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPW 600
Query: 603 AYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIA 662
A++L WI KIPI+ ++VA+WVFLTYYVIGFDPNVGR F+QYLLL ++QMAS LFR IA
Sbjct: 601 AFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIA 660
Query: 663 ATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLG 722
A GRN++VANTFGSFALL LF LGGF+LSR++IKKWWIW YW SPLMY QNAIVVNEFLG
Sbjct: 661 AAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLG 720
Query: 723 NSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFG 782
NSW KVLP+TTE LG+QVL+SRGFFT AYWYW+G+GAL GF LL+NF FTLAL+FL P
Sbjct: 721 NSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQ 780
Query: 783 KNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIA 842
K QAVIS++S SN +TG IQLS S R++ V+ NH K++GMVLPF+PHSITF++I
Sbjct: 781 KPQAVISEDSASNT-SGKTGEVIQLS-SVRTELIVEENHQKQKGMVLPFEPHSITFNDIR 838
Query: 843 YSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 902
YSVDMPQEM R G ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 839 YSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 898
Query: 903 ISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMF 962
I G I ISG+PKKQETFARISGYCEQNDIHSP+VTVYESLLYS+WLRLP EV+S TRKMF
Sbjct: 899 IEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMF 958
Query: 963 IEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
IEEVMELVEL PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 959 IEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1018
Query: 1023 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIK 1082
AAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDEL L+KRGGQEIYVG LGRHS LIK
Sbjct: 1019 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIK 1078
Query: 1083 YFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKP 1142
YFE I GV IKDGYNPATWMLEV++ +QE LG+DFA IYK+SELYRRNKALI+++S P
Sbjct: 1079 YFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELSTP 1138
Query: 1143 APGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDM 1202
GS DL+F TQY+QSFFTQCMACLWKQHWSYWRNPPY+AVRFLFTT+IAL FGTMFWD+
Sbjct: 1139 PLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFWDL 1198
Query: 1203 GTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFA 1262
G+KT K+QDLFNAMGSMY A++FLG+QNA+SVQPVV++ERTVFYRERAAGMYS LPYAFA
Sbjct: 1199 GSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYAFA 1258
Query: 1263 QALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPN 1322
Q +IE+PYIF+Q+ YG+IVYAMIGFEW+AAKF WY FFM+FTLL++TYYGMMAVA+TPN
Sbjct: 1259 QVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVTPN 1318
Query: 1323 HHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRL 1382
++ IV+ AFY +WN+FSGFIIPR RIP+WWRWY W CPV++TLYGLV+SQFGDI+ L
Sbjct: 1319 QQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDIKHTL 1378
Query: 1383 ESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
ESGETVE F+RS+F FKH+ LG VAA VF F LFA FA IK FNFQ+R
Sbjct: 1379 ESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2301 bits (5963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1080/1432 (75%), Positives = 1249/1432 (87%), Gaps = 9/1432 (0%)
Query: 4 GNKVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKG 63
G+ +Y+ASNSLR S+++WR++ AFS SSR EEDDEEALKWAALEKLPTYNRL+KG
Sbjct: 3 GSDIYRASNSLRSRSSTVWRNSGVE--AFSRSSR-EEDDEEALKWAALEKLPTYNRLRKG 59
Query: 64 ILTSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEV 123
+LT+S G ANE+DV +LG QERQ+++++LVKVA+ DNE FLLKLK RIDRVG+ +PTIEV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 124 RFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGR 183
R+EHLN+EAEA+VGSRALP+F N N++EGF N +++ S+KKH+TILKDVSGII+P R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 184 MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIG 243
MTLLLGPP+SGKTTLLLAL+GKLD +L+VSGRVTYNGH+++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVT 303
EMTVRETLAFSARCQGVGSR++MLSELSRREKAA IKPDPD+DV+MKA ATEGQE+++VT
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 304 DYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTT 363
DY LKILGLD+CADTMVGDEMLRGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 364 FQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFM 423
FQIV+SLR +HIL GT +ISLLQPAPETYDLFDDIILISDGQ+VY GPRE+VL+FF+ M
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 424 GFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELR 483
GF CP+RKGVADFLQEVTS+KDQ QYWV +++PYRFVTV +FA+AFQ F++G K+G+EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 484 IPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMT 543
+PFD+ KSH AALTTK YG++KKELLKA SRE LLMKRNSFVY+FKL QL IM LVAMT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 544 LFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWA 603
LF RT+MH +++ D +Y GA+FF+++ +MFNG+AEI MTIAKLP+FYKQR+L FYPSWA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 604 YALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAA 663
YA+ +WILKIP++ +EVAVWVFLTYYVIGFDPNVGR F+QYL+LL ++QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 664 TGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGN 723
GRN++VANTFG+FA++ + LGGF+LS+ DIK WWIW YW SPLMY QNA++VNEFL N
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 724 SWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGK 783
SW N T LGV+ L+SR FFTD+YWYWLGLGAL GF+ LFN F LAL FL PF K
Sbjct: 720 SWH----NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 784 NQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAY 843
QA I+++ SNE + +SGR + V+++H KK+GMVLPF+PHSITFDE+ Y
Sbjct: 776 PQATITEDESSNEGTLADIELPGIESSGRGDSLVESSHGKKKGMVLPFEPHSITFDEVVY 835
Query: 844 SVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 903
SVDMPQEM GV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 836 SVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 895
Query: 904 SGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFI 963
GSI ISGYPKKQETFARISGYCEQNDIHSP+VTVYESLLYSAWLRLP VDS TRKMFI
Sbjct: 896 DGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMFI 955
Query: 964 EEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
EEVMELVELNP+R +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 956 EEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1015
Query: 1024 AIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKY 1083
AIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFL+KRGGQEIYVG LGRHSSHLIKY
Sbjct: 1016 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKY 1075
Query: 1084 FEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPA 1143
FE I GVSKIKDGYNPATWMLEVTA +QE +LG+DF D+YK+S+LYRRNK LI+++ +PA
Sbjct: 1076 FESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQPA 1135
Query: 1144 PGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMG 1203
PGSKDLHF TQY+QSF QC ACLWKQ WSYWRNPPY+AVRF FTT IAL FGT+FWD+G
Sbjct: 1136 PGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLG 1195
Query: 1204 TKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQ 1263
K + DL NA+GSMYTAVLFLGVQNA+SVQPVV+IERTVFYRE+AAGMYSALPYAFAQ
Sbjct: 1196 GKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFAQ 1255
Query: 1264 ALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNH 1323
L+E+PY+FVQ+VTYGVIVYAMIGFEWTA KF WY FFM+FTLLY+T+YGMM V +TPNH
Sbjct: 1256 ILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPNH 1315
Query: 1324 HISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRL- 1382
HI+ IVA AFY +WN+FSGF++ R IP+WWRWYYWACPV+WT+YGLVASQFGD+ + +
Sbjct: 1316 HIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDLTEPMT 1375
Query: 1383 -ESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
E + V+ FL ++G KHDF+GV A VV VLFALIFAV IK FNFQKR
Sbjct: 1376 SEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2284 bits (5919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1076/1432 (75%), Positives = 1254/1432 (87%), Gaps = 10/1432 (0%)
Query: 4 GNKVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEED-DEEALKWAALEKLPTYNRLKK 62
G+ +Y+A NSLR S+++WR+ + + AFS SSR EED DEEALKWAALEKLPTYNRL+K
Sbjct: 3 GSDIYRARNSLRANSSTVWRN--SIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLRK 60
Query: 63 GILTSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIE 122
G+LT+SRG ANE+D+ LG QERQ+++D+L+ VA+ DNE LLKLK RIDRVGI +PTIE
Sbjct: 61 GLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTIE 120
Query: 123 VRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPG 182
VR+EHLNVEAEAYVGSRALPTF NF N++E F S++IL +KKH+TIL+DVSGII+P
Sbjct: 121 VRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKPR 180
Query: 183 RMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHI 242
RM LLLGPP+SGKTTLLLAL+GKLD +L+VSGRV YNGH+M+EFVPQRTAAYISQHD HI
Sbjct: 181 RMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVHI 240
Query: 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVV 302
GEMTVRETLAFSARCQGVG+R+++LSEL+RREK A IKPDPDIDV+MKAAAT GQEAS+V
Sbjct: 241 GEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLV 300
Query: 303 TDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSST 362
TDY+LKILGLD+CADTM+GDEMLRGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSST
Sbjct: 301 TDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSST 360
Query: 363 TFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKF 422
TFQIV SLRQ +HIL GT +ISLLQPAPETY+LFDDI+LISDGQIVYQGPRE+VLEFF++
Sbjct: 361 TFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFEY 420
Query: 423 MGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDEL 482
+GF+CP+RKGVADFLQEVTSRKDQEQYW+H++E YRFVTV EFA+AFQ F++G+++G+EL
Sbjct: 421 VGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEEL 480
Query: 483 RIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAM 542
PFDK KSH AALTTK YGV+KKELLKA SRE LLMKRNSFVYIFKL QLTI+ ++ M
Sbjct: 481 ATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILTM 540
Query: 543 TLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSW 602
T+F RT+MHR+S+ DG +YTGALFF V+++MFNG+AEI MTI KLPIFYKQRDL FYPSW
Sbjct: 541 TMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSW 600
Query: 603 AYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIA 662
AYA+ +WILKIPI++IE AVWVFLTYYVIGFDPNVGRL +QYL+LL +NQM+S LFR IA
Sbjct: 601 AYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAIA 660
Query: 663 ATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLG 722
A GRN++VA+TFGSFALL+LF LGGFVLSR DIK WWIW YW SPLMY QNAIVVNEFLG
Sbjct: 661 ALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFLG 720
Query: 723 NSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFG 782
+SW PN+ + LG+Q+L+SRGFFT AYWYW+G+GAL GF++LFN +TLAL++LNP+
Sbjct: 721 DSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPYD 780
Query: 783 KNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIA 842
Q I++ES+S T G + ++GR+ A + ++H KKRGM+LPF+P+SITFD+I
Sbjct: 781 TPQTTITEESES----GMTNGIAE--SAGRAIAVMSSSHKKKRGMILPFEPYSITFDQIV 834
Query: 843 YSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 902
YSVDMP EM GV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 835 YSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 894
Query: 903 ISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMF 962
I G+I +SGYPK+QETFARISGYCEQNDIHSP+VTVYESL+YSAWLRLP EV++ TRKMF
Sbjct: 895 IEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPAEVEAYTRKMF 954
Query: 963 IEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
IEEVMELVELNPLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 955 IEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1014
Query: 1023 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIK 1082
AAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFL+KRGGQEIYVG LGRHSS +IK
Sbjct: 1015 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSQMIK 1074
Query: 1083 YFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKP 1142
YFE I GV KIKDGYNPATWMLEVT P+QE LG+DF +IY++S L RRNK LI ++ P
Sbjct: 1075 YFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNSGLCRRNKRLISELGNP 1134
Query: 1143 APGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDM 1202
APGSKDLHF TQY QS QC+ACLWKQHWSYWRNPPY+AVRFL TT+ A+ FGTMFWD+
Sbjct: 1135 APGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVTAVLFGTMFWDL 1194
Query: 1203 GTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFA 1262
G K +QDLFNAMGSMY AVLF+GVQN+ASVQPVV+IERTVFYRERAAGMYSALPYA A
Sbjct: 1195 GGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFYRERAAGMYSALPYALA 1254
Query: 1263 QALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPN 1322
Q +IE+PY+FVQ+ +Y VIVYAM+GFEWT KF WY FFM+FTL YFT+YGMM VA+TPN
Sbjct: 1255 QVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTLCYFTFYGMMTVAVTPN 1314
Query: 1323 HHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRL 1382
HH++ +VA AFYG+WN+FSGF+I R IP+WWRWYYWACPV+WT+YGLVASQFGDI + +
Sbjct: 1315 HHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWTIYGLVASQFGDITNVM 1374
Query: 1383 ESGE-TVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
+S +V++F+RS G KHDF+GV A +V F VLF +IFAV IK FNFQ+R
Sbjct: 1375 KSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSIKAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2277 bits (5901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1107/1430 (77%), Positives = 1260/1430 (88%), Gaps = 10/1430 (0%)
Query: 6 KVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGIL 65
++Y+A SLR S+SIWR++ + S SSR +EDDEEALKWAALEKLPTYNR++KG+L
Sbjct: 5 EIYRAGGSLRKDSSSIWRNSGEEVS--SRSSR-DEDDEEALKWAALEKLPTYNRMRKGLL 61
Query: 66 TSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRF 125
S GEA+EVD+ NLG QE++ ++++LVK+A+ DNE+FLLKL+NRIDRVGI LP IEVRF
Sbjct: 62 MGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 126 EHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMT 185
EHL ++AEA+VGSRALP+F N N IE LN++ ILPSRKK TIL DVSGII+P RMT
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKFTILHDVSGIIKPRRMT 181
Query: 186 LLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245
LLLGPP+SGKTTLLLAL+GKLDSSL+V+G+VTYNGH M+EFVPQRTA YISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEM 241
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDY 305
TVRETLAFSARCQGVG R++ML+ELSRREKAA IKPDPDIDVFMKAAATEGQ+ +V+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDY 301
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
LKILGL+VCADT+VGD+M+RGISGGQ+KRVTTGEM+VGP++ALFMDEISTGLDSSTT+Q
Sbjct: 302 TLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQ 361
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGF 425
IVNSLRQ+IHIL GT LISLLQPAPETYDLFDDIIL+SD QIVYQGPRE VL+FF+ MGF
Sbjct: 362 IVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGF 421
Query: 426 ECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIP 485
CP+RKGVADFLQEVTSRKDQ+QYW K+EPY FVTVK+FA+AFQ F+ G+KVGDEL P
Sbjct: 422 RCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATP 481
Query: 486 FDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLF 545
FDK KSH AAL T+ YGV KKELL AC+SRE LMKRNSFVYI +L QL IM ++MT+F
Sbjct: 482 FDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIF 541
Query: 546 FRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYA 605
RT+MH++S DG IY GALFF V+MIMFNGM+E+ MTIAKLP+FYKQR L FYP+WAYA
Sbjct: 542 LRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYA 601
Query: 606 LSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATG 665
LS+WILKIPI+++EVAVWVF++YYVIGFDPNVGRLF+QYLLL+ +NQMASALFR IAA G
Sbjct: 602 LSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAG 661
Query: 666 RNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW 725
RN++VANTFGSF+LLLLF LGGFVLSRE++KKWWIW YW SPLMYAQNAIVVNEFLG SW
Sbjct: 662 RNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 726 RK-VLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKN 784
K N+TE LGV VLKSRGFFT+AYWYW+G GAL GFIL+FNF +T+AL++LN F K
Sbjct: 722 SKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKP 781
Query: 785 QAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYS 844
QAVI++ES+ +++TGG I+LS S R +A +A + KRGMVLPF+P SITFD+I YS
Sbjct: 782 QAVITEESE----NSKTGGKIELS-SHRREAIAEARRNTKRGMVLPFQPLSITFDDIRYS 836
Query: 845 VDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 904
VDMP+EM GVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 837 VDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 896
Query: 905 GSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIE 964
G+I ISGYPKKQETF RISGYCEQNDIHSP+VT++ESLLYSAWLRLP +VDS TRKMFIE
Sbjct: 897 GNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIE 956
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+VMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 957 KVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1016
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084
IVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDEL LLKRGGQEIYVG LGRHSS LIKYF
Sbjct: 1017 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGLLGRHSSCLIKYF 1076
Query: 1085 EGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAP 1144
EGI GVSKIK GYNPATWMLEVT +QE LG+DF +IYK+S LYRRNK LIK++S+PAP
Sbjct: 1077 EGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRRNKDLIKELSQPAP 1136
Query: 1145 GSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGT 1204
GSKDL+F TQY+QSFFTQCMACLWKQ SYWRNPPY+AVRF FTT IAL FGTMFWD+GT
Sbjct: 1137 GSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGT 1196
Query: 1205 KTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQA 1264
K KQQDL NAMGSMY AVLFLGVQN++SVQPVV++ERTVFYRERAAG+YSA+PYAFA
Sbjct: 1197 KRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGIYSAMPYAFAHV 1256
Query: 1265 LIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHH 1324
IEIPY+F Q+V YGVIVYAMIGFEWTAAKF WY FFMFFTLLYFT+YGMMAVA TPN H
Sbjct: 1257 TIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQH 1316
Query: 1325 ISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLE- 1383
I+ IVA AFYGLWN+FSGFI+PRTRIP+WWRWYYWACPV+WTLYGLV SQFGDIQDR E
Sbjct: 1317 IAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFED 1376
Query: 1384 SGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
+G+TVEQ+L +FGF+HDFLGVVAAV+ F VLF IFA IK FNFQ+R
Sbjct: 1377 TGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2274 bits (5893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1108/1447 (76%), Positives = 1265/1447 (87%), Gaps = 36/1447 (2%)
Query: 16 IGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANEV 75
+ S+SIWR++ + FS SSR +EDDEEALKWAALEKLPTYNR++KG+L S GEA+EV
Sbjct: 1703 LDSSSIWRNSGEEV--FSRSSR-DEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEV 1759
Query: 76 DVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAY 135
D+ NLG QE++ ++++LVK+A+ DNE+FLLKL+NRIDRVGI LP IEVRFEHL ++AEA+
Sbjct: 1760 DIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAH 1819
Query: 136 VGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGK 195
VGSRALP+F N IE LN++ ILPSRKK LTIL DVSGII+P RMTLLLGPP+SGK
Sbjct: 1820 VGSRALPSFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGK 1879
Query: 196 TTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 255
TTLLLAL+GKLDSSL+V+G+VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSA
Sbjct: 1880 TTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSA 1939
Query: 256 RCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVC 315
RCQGVG R++ML+ELSRREKAA IKPDPDIDVFMKA ATEGQ+ +V+TDY LKILGL+VC
Sbjct: 1940 RCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVC 1999
Query: 316 ADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIH 375
ADT+VGD+M+RGISGGQ+KRVTTGEM+VGP++ALFMDEISTGLDSSTT+QIVNSLRQ+IH
Sbjct: 2000 ADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIH 2059
Query: 376 ILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVAD 435
IL GT LISLLQPAPETYDLFDDIIL+SD QIVYQGPRE VL+FF+ MGF CP+RKGVAD
Sbjct: 2060 ILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVAD 2119
Query: 436 FLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAA 495
FLQEVTSRKDQ+QYW K+EPY FVTVKEFA+AFQ F++G+K+G EL PFDK KSH AA
Sbjct: 2120 FLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAA 2179
Query: 496 LTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSI 555
L T+ YGV KKELL AC+SRE LLMKRNSFVYIFKL QL IM ++MT+F RT+MH++S
Sbjct: 2180 LKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNST 2239
Query: 556 TDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPI 615
DG IYTGALFF V+MIMFNGM+E+ MTIAKLP+FYKQR L FYP+WAYAL +WILKIPI
Sbjct: 2240 DDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPI 2299
Query: 616 SYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFG 675
+++EVAVWVF++YYVIGFDPNVGRLF+QYLLL+ +NQMASALFR IAA GRN++VANTFG
Sbjct: 2300 TFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFG 2359
Query: 676 SFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRK-VLPNTTE 734
SF+LLLLF LGGFVLSRE++KKWWIW YW SPLMYAQNAIVVNEFLG SW K ++TE
Sbjct: 2360 SFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTE 2419
Query: 735 PLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQS 794
LGV VLKSRGFFT+AYWYW+G GAL GFIL+FNF +T+AL++LN F K QAVI++ES+
Sbjct: 2420 SLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE- 2478
Query: 795 NEHDNRTGGTIQLSTSG---------------------------RSKAEVKANHHKKRGM 827
+++TGG I+LS+ R++A +A + K+GM
Sbjct: 2479 ---NSKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGM 2535
Query: 828 VLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 887
VLPF+P SITFD+I YSVDMP+EM GVLED+L LL GVSGAFRPGVLTALMGVSGAGK
Sbjct: 2536 VLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGK 2595
Query: 888 TTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 947
TTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP+VT++ESLLYSAW
Sbjct: 2596 TTLMDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAW 2655
Query: 948 LRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPS 1007
LRLP +VDS TRKMFIEEVMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAVELVANPS
Sbjct: 2656 LRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 2715
Query: 1008 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDEL LLKRGGQE
Sbjct: 2716 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQE 2775
Query: 1068 IYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSE 1127
IYVG LGRHSSHLIKYF+GI GVSKIKDGYNPATWMLEVT+ +QE LG+DF +IYK+S+
Sbjct: 2776 IYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSD 2835
Query: 1128 LYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLF 1187
LYRRNK LIK++S+PAPGSKDL+F TQY+QSFFTQCMACLWKQ SYWRNPPY+AVRF F
Sbjct: 2836 LYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFF 2895
Query: 1188 TTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYR 1247
TT IAL FGTMFWD+GTK KKQQDL NAMGSMY AVLFLGVQN++SVQPVV++ERTVFYR
Sbjct: 2896 TTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYR 2955
Query: 1248 ERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLL 1307
ERAAGMYSA+PYAFAQAL+EIPY+F Q+V YGVIVYAMIGFEWTAAKF WY FFMFFTLL
Sbjct: 2956 ERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLL 3015
Query: 1308 YFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTL 1367
YFT+YGMMAVA TPN HI+ IVA AFYGLWN+FSGFI+PRTRIP+WWRWYYWACPV+WTL
Sbjct: 3016 YFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTL 3075
Query: 1368 YGLVASQFGDIQDRLE-SGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIK 1426
YGLV SQFGDIQDR E +G+TVEQ+L +FGF+HDFLGVVAAV+ F VLF IFA IK
Sbjct: 3076 YGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIK 3135
Query: 1427 VFNFQKR 1433
FNFQ+R
Sbjct: 3136 AFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2272 bits (5887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1110/1474 (75%), Positives = 1269/1474 (86%), Gaps = 53/1474 (3%)
Query: 6 KVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGIL 65
++Y+A SLR S+SIWR++ + FS SSR +EDDEEALKWAALEKLPTYNR++KG+L
Sbjct: 5 EIYRAGGSLRKDSSSIWRNSGEEV--FSRSSR-DEDDEEALKWAALEKLPTYNRMRKGLL 61
Query: 66 TSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRF 125
S GEA+EVD+ NLG QE++ ++++LVK+A+ DNE+FLLKL+NRIDRVGI LP IEVRF
Sbjct: 62 MGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 126 EHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMT 185
EHL ++AEA+VGSRALP+F N N IE LN++ ILPSRKK TIL DVSGII+P RMT
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPRRMT 181
Query: 186 LLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245
LLLGPP+SGKTTLLLAL+GKLDSSL+V+G+VTYNGH M+EFVPQRTA YISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEM 241
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK--------------- 290
TVRETLAFSARCQGVG R++ML+ELSRREKAA IKPDPDIDVFMK
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIG 301
Query: 291 --AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
A ATEGQ+ +V+TDY LKILGL+VCADT+VGD+M+RGISGGQ+KRVTTGEM+VGP++A
Sbjct: 302 LMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKA 361
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
LFMDEISTGLDSSTT+QIVNSLRQ+IHIL GT LISLLQPAPETYDLFDDIIL+SD QIV
Sbjct: 362 LFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIV 421
Query: 409 YQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADA 468
YQGPRE VL+FF+ MGF CP+RKGVADFLQEVTSRKDQ+QYW K+EPY FVTVKEFA+A
Sbjct: 422 YQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEA 481
Query: 469 FQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYI 528
FQ F++G+K+G EL PFDK KSH AAL T+ YGV KKELL AC+SRE LLMKRNSFVYI
Sbjct: 482 FQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYI 541
Query: 529 FKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLP 588
FKL QL IM ++MT+F RT+MH++S DG IYTGALFF V+MIMFNGM+E+ MTIAKLP
Sbjct: 542 FKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLP 601
Query: 589 IFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLL 648
+FYKQR L FYP+WAYAL +WILKIPI+++EVAVWVF++YYVIGFDPNVGRLF+QYLLL+
Sbjct: 602 VFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLV 661
Query: 649 FLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPL 708
+NQMASALFR IAA GRN++VANTFGSF+LLLLF LGGFVLSRE++KKWWIW YW SPL
Sbjct: 662 LVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPL 721
Query: 709 MYAQNAIVVNEFLGNSWRK-VLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLF 767
MYAQNAIVVNEFLG SW K ++TE LGV VLKSRGFFT+AYWYW+G GAL GFIL+F
Sbjct: 722 MYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVF 781
Query: 768 NFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGTIQLSTSGR--------------- 812
NF +T+AL++LN F K QAVI++ES+ +++TGG I+LS+ R
Sbjct: 782 NFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERREEI 837
Query: 813 ------------SKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDK 860
++A +A + K+GMVLPF+P SITF++I YSVDMP+EM GVLED+
Sbjct: 838 GRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDR 897
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFA 920
L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFA
Sbjct: 898 LELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFA 957
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
RI GYCEQNDIHSP+VT++ESLLYSAWLRLP +VDS TRKMFIEEVMELVEL PL+ +LV
Sbjct: 958 RIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLV 1017
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
GLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV
Sbjct: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPA 1100
VCTIHQPSIDI EAFDEL LLKRGGQEIYVG LGRHSSHLIKYFEGI GVSKIK GYNPA
Sbjct: 1078 VCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPA 1137
Query: 1101 TWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFF 1160
TWMLEVT +QE LG+DF +IYK+S+LYRRNK LIK++S+PAPGSKDL+F TQY+QSFF
Sbjct: 1138 TWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFF 1197
Query: 1161 TQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMY 1220
TQCMACLWKQ SYWRNPPY+AVRF FTT IAL FGTMFWD+GTK KKQQDL NAMGSMY
Sbjct: 1198 TQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMY 1257
Query: 1221 TAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGV 1280
AVLFLGVQN++SVQPVV++ERTVFYRERAAGMYSA+PYAFAQAL+EIPY+F Q+V YGV
Sbjct: 1258 AAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGV 1317
Query: 1281 IVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVF 1340
IVYAMIGFEWTAAKF WY FFMFFTLLYFT+YGMMAVA TPN HI+ IVA AFYGLWN+F
Sbjct: 1318 IVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLF 1377
Query: 1341 SGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLE-SGETVEQFLRSFFGFK 1399
SGFI+PRTRIP+WWRWYYWACPV+WTLYGLV SQFGDIQDR E +G+TVEQ+L +FGF+
Sbjct: 1378 SGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFE 1437
Query: 1400 HDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
HDFLGVVAAV+ F +LF IFA IK FNFQ+R
Sbjct: 1438 HDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2271 bits (5884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1107/1454 (76%), Positives = 1263/1454 (86%), Gaps = 33/1454 (2%)
Query: 6 KVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGIL 65
++Y+A SLR S+SIWR++ + S SSR +EDDEEALKWAALEKLPTYNR++KG+L
Sbjct: 5 EIYRAGGSLRKDSSSIWRNSGEEVS--SRSSR-DEDDEEALKWAALEKLPTYNRMRKGLL 61
Query: 66 TSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRF 125
S GEA+EVD+ NLG QE++ ++++LVK+A+ DNE+FLLKL+NRIDRVGI LP IEVRF
Sbjct: 62 MGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 126 EHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMT 185
EHL ++AEA+VGSRALP+F N N IE LN++ ILPSRKK TIL DVSGII+P RMT
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKFTILHDVSGIIKPRRMT 181
Query: 186 LLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245
LLLGPP+SGKTTLLLAL+GKLDSSL+V+G+VTYNGH M+EFVPQRTA YISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEM 241
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDY 305
TVRETLAFSARCQGVG R++ML+ELSRREKAA IKPDPDIDVFMKAAATEGQ+ +V+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDY 301
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
LKILGL+VCADT+VGD+M+RGISGGQ+KRVTTGEM+VGP++ALFMDEISTGLDSSTT+Q
Sbjct: 302 TLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQ 361
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGF 425
IVNSLRQ+IHIL GT LISLLQPAPETYDLFDDIIL+SD QIVYQGPRE VL+FF+ MGF
Sbjct: 362 IVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGF 421
Query: 426 ECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIP 485
CP+RKGVADFLQEVTSRKDQ+QYW K+EPY FVTVK+FA+AFQ F+ G+KVGDEL P
Sbjct: 422 RCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATP 481
Query: 486 FDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLF 545
FDK KSH AAL T+ YGV KKELL AC+SRE LMKRNSFVYI +L QL IM ++MT+F
Sbjct: 482 FDKTKSHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIF 541
Query: 546 FRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYA 605
RT+MH++S DG IY GALFF V+MIMFNGM+E+ MTIAKLP+FYKQR L FYP+WAYA
Sbjct: 542 LRTEMHKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYA 601
Query: 606 LSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATG 665
LS+WILKIPI+++EVAVWVF++YYVIGFDPNVGRLF+QYLLL+ +NQMASALFR IAA G
Sbjct: 602 LSSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAG 661
Query: 666 RNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW 725
RN++VANTFGSF+LLLLF LGGFVLSRE++KKWWIW YW SPLMYAQNAIVVNEFLG SW
Sbjct: 662 RNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 726 RK-VLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKN 784
K N+TE LGV VLKSRGFFT+AYWYW+G GAL GFIL+FNF +T+AL++LN F K
Sbjct: 722 SKNSSTNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKP 781
Query: 785 QAVISQESQSNEHDNRTGGTIQLSTSG------------------------RSKAEVKAN 820
QAVI++ES+ +++TGG I+LS+ R++A +A
Sbjct: 782 QAVITEESE----NSKTGGKIELSSHRRGSIDQTASTDEIGRSISSTSSSVRAEAIAEAR 837
Query: 821 HHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALM 880
+ KRGMVLPF+P SITFD+I YSVDMP+EM GVLED+L LL GVSGAFRPGVLTALM
Sbjct: 838 RNTKRGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALM 897
Query: 881 GVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYE 940
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETF RISGYCEQNDIHSP+VT++E
Sbjct: 898 GVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHE 957
Query: 941 SLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAV 1000
SLLYSAWLRLP +VDS TRKMFIE+VMELVEL PL+ +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 958 SLLYSAWLRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAV 1017
Query: 1001 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFL 1060
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDEL L
Sbjct: 1018 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1077
Query: 1061 LKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFA 1120
LKRGGQEIYVG LGRHSS LIKYFEGI GVSKIK GYNPATWMLEVT +QE LG+DF
Sbjct: 1078 LKRGGQEIYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFT 1137
Query: 1121 DIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPY 1180
+IYK+S LYRRNK LIK++S+PAPGSKDL+F TQY+QSFFTQCMACLWKQ SYWRNPPY
Sbjct: 1138 EIYKNSNLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPY 1197
Query: 1181 SAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSI 1240
+AVRF FTT IAL FGTMFWD+GTK KQQDL NAMGSMY AVLFLGVQN++SVQPVV++
Sbjct: 1198 TAVRFFFTTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAV 1257
Query: 1241 ERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQF 1300
ERTVFYRERAAG+YSA+PYAFA AL+EIPY+F Q+V YGVIVYAMIGFEWTAAKF WY F
Sbjct: 1258 ERTVFYRERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLF 1317
Query: 1301 FMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWA 1360
FMFFTLLYFT+YGMMAVA TPN HI+ IVA AFYGLWN+FSGFI+PRTRIP+WWRWYYWA
Sbjct: 1318 FMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWA 1377
Query: 1361 CPVSWTLYGLVASQFGDIQDRLE-SGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFAL 1419
CPV+WTLYGLV SQFGDIQDR E +G+TVEQ+L +FGF+HDFLGVVAAV+ F VLF
Sbjct: 1378 CPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLF 1437
Query: 1420 IFAVGIKVFNFQKR 1433
IFA IK FNFQ+R
Sbjct: 1438 IFAFAIKAFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2270 bits (5883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1095/1427 (76%), Positives = 1244/1427 (87%), Gaps = 5/1427 (0%)
Query: 8 YKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTS 67
Y+AS SLR +SIWRS+ A + FS SSR +EDDEEALKWAALEKLPTYNRL++G+L
Sbjct: 7 YRASGSLRRNGSSIWRSSGADV--FSRSSR-DEDDEEALKWAALEKLPTYNRLRRGLLMG 63
Query: 68 SRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEH 127
S GEA+E+D+ NLG QE++ ++++LVKVA+ DNE+FLLKLKNRIDRVGI +P IEVRFEH
Sbjct: 64 SEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEH 123
Query: 128 LNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLL 187
L ++AEA+VGSRALP+F NF N +EG LN+V ILPS+K+ TIL DVSGII+P R+TLL
Sbjct: 124 LTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLL 183
Query: 188 LGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 247
LGPP+SGKTTLLLALAGKLD +L+V GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTV
Sbjct: 184 LGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTV 243
Query: 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYIL 307
RETLAFSARCQGVG R++ML+ELSRREKAA IKPDPD+DVFMKAAATEGQ+ +VVTDY L
Sbjct: 244 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 303
Query: 308 KILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIV 367
KILGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGP++ALFMDEISTGLDSSTTFQI+
Sbjct: 304 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQII 363
Query: 368 NSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFEC 427
NSL+Q+IHIL GT +ISLLQPAPETY+LFDDIIL+SD QIVYQGPRE VLEFF+ +GF+C
Sbjct: 364 NSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKC 423
Query: 428 PKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFD 487
P+RKG ADFLQEVTSRKDQ QYW K+ PY FVTVKEFA+AFQ F++G+KV DEL PFD
Sbjct: 424 PERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFD 483
Query: 488 KRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFR 547
+ KSH AALTTK YGV KKELL A MSRE LLMKRNSFVYIFKL QL ++ ++AMTLF R
Sbjct: 484 RAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLR 543
Query: 548 TKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALS 607
T+M+++S DG IYTGALFF V+MIMFNGMAE+ MTIAKLP+FYKQRD FYP+WAYAL
Sbjct: 544 TEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALP 603
Query: 608 TWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRN 667
TW+LKIPI+++EVAVWVF+TYYVIGFDPNV RLFRQYLLLL +NQMAS LFR IAA GRN
Sbjct: 604 TWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRN 663
Query: 668 IVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRK 727
++VA+TFG+FA+L+L LGGF+LS +++KKWWIW YW SPLMYAQNAIVVNEFLG SW K
Sbjct: 664 MIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSK 723
Query: 728 VLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAV 787
+ N+TE LG+ VLKSRGFFTDA+WYW+G GAL GFI +FNF +TL L++LNPF K QAV
Sbjct: 724 NVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAV 783
Query: 788 ISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDM 847
I++ES N TG +A + NH+KK+GMVLPF+PHSITFD+I YSVDM
Sbjct: 784 ITEES-DNAKTATTGDETHTWGEHMVEAIAEGNHNKKKGMVLPFQPHSITFDDIRYSVDM 842
Query: 848 PQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSI 907
P+EM G LED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I
Sbjct: 843 PEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNI 902
Query: 908 MISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
ISGYPKKQETFARISGYCEQNDIHSP+VTV+ESLLYSAWLRLP +V+S TRKMFIEEVM
Sbjct: 903 SISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFIEEVM 962
Query: 968 ELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
ELVEL PLR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 963 ELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1022
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGI 1087
RTVRNTVDTGRTVVCTIHQPSIDI EAFDEL L+KRGGQEIYVG LGRHSSHLI YFEGI
Sbjct: 1023 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINYFEGI 1082
Query: 1088 RGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSK 1147
GVSKIKDGYNPATWMLEVT +QE LG+DF +IYK+S+LYRRNK LIK++S+PAPG+K
Sbjct: 1083 EGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGTK 1142
Query: 1148 DLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTK 1207
DL+FATQY+Q FFTQ +ACLWKQ WSYWRNPPY+AVRFLFTT IAL FG +FWD+GT+
Sbjct: 1143 DLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGLIFWDLGTRRT 1202
Query: 1208 KQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIE 1267
+QQDL NAMGSMY AVLFLGVQNA SVQPV+ +ERTVFYRERAAGMYSALPYAF QAL+E
Sbjct: 1203 RQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSALPYAFGQALVE 1262
Query: 1268 IPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISG 1327
IPY+F Q+V YGVIVY MIGFEWTA KF WY FFMF TLLYFT+YGMMAVA TPN HI+
Sbjct: 1263 IPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAVAATPNQHIAS 1322
Query: 1328 IVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDR-LESGE 1386
I+A FY LWN+FSGFI+PR RIP+WWRWY W CPV+WTLYGLVASQFGDIQ LE+ +
Sbjct: 1323 IIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGDIQSTLLENNQ 1382
Query: 1387 TVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
TV+QFL +FGFKHDFLGVVAAVV F VLF IFA IK FNFQKR
Sbjct: 1383 TVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2268 bits (5878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1095/1426 (76%), Positives = 1244/1426 (87%), Gaps = 13/1426 (0%)
Query: 9 KASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSS 68
+AS SLR +SIWRS+ A + FS SSR +EDDEEALKWAALEKLPTYNRL++G+L S
Sbjct: 229 QASGSLRRNGSSIWRSSGADV--FSRSSR-DEDDEEALKWAALEKLPTYNRLRRGLLMGS 285
Query: 69 RGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHL 128
GEA+E+D+ NLG QE++ ++++LVKVA+ DNE+FLLKLKNRIDRVGI +P IEVRFEHL
Sbjct: 286 EGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHL 345
Query: 129 NVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLL 188
++AEA+VGSRALP+F NF N +EG LN+V ILPS+K+ TIL DVSGII+P R+TLLL
Sbjct: 346 TIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLL 405
Query: 189 GPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248
GPP+SGKTTLLLALAGKLD +L+V GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTVR
Sbjct: 406 GPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVR 465
Query: 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILK 308
ETLAFSARCQGVG R++ML+ELSRREKAA IKPDPD+DVFMKAAATEGQ+ +VVTDY LK
Sbjct: 466 ETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLK 525
Query: 309 ILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVN 368
ILGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGP++ALFMDEISTGLDSSTTFQI+N
Sbjct: 526 ILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIIN 585
Query: 369 SLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECP 428
SL+Q+IHIL GT +ISLLQPAPETY+LFDDIIL+SD QIVYQGPRE VLEFF+ +GF+CP
Sbjct: 586 SLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCP 645
Query: 429 KRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDK 488
+RKG ADFLQEVTSRKDQ QYW K+ PY FVTVKEFA+AFQ F++G+KV DEL PFD+
Sbjct: 646 ERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDR 705
Query: 489 RKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRT 548
KSH AALTTK YGV KKELL A MSRE LLMKRNSFVYIFKL QL ++ ++AMTLF RT
Sbjct: 706 AKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRT 765
Query: 549 KMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALST 608
+M+++S DG IYTGALFF V+MIMFNGMAE+ MTIAKLP+FYKQRD FYP+WAYAL T
Sbjct: 766 EMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPT 825
Query: 609 WILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNI 668
W+LKIPI+++EVAVWVF+TYYVIGFDPNV RLFRQYLLLL +NQMAS LFR IAA GRN+
Sbjct: 826 WVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNM 885
Query: 669 VVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKV 728
+VA+TFG+FA+L+L LGGF+LS +++KKWWIW YW SPLMYAQNAIVVNEFLG SW K
Sbjct: 886 IVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKN 945
Query: 729 LPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVI 788
+ N+TE LG+ VLKSRGFFTDA+WYW+G GAL GFI +FNF +TL L++LNPF K QAVI
Sbjct: 946 VTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVI 1005
Query: 789 SQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMP 848
++ES DN T T +A + NH+KK+GMVLPF+PHSITFD+I YSVDMP
Sbjct: 1006 TEES-----DNAKTAT----TEHMVEAIAEGNHNKKKGMVLPFQPHSITFDDIRYSVDMP 1056
Query: 849 QEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIM 908
+EM G LED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I
Sbjct: 1057 EEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIS 1116
Query: 909 ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
ISGYPKKQETFARISGYCEQNDIHSP+VTV+ESLLYSAWLRLP +V+S TRKMFIEEVME
Sbjct: 1117 ISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFIEEVME 1176
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
LVEL PLR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 1177 LVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1236
Query: 1029 TVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIR 1088
TVRNTVDTGRTVVCTIHQPSIDI EAFDEL L+KRGGQEIYVG LGRHSSHLI YFEGI
Sbjct: 1237 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINYFEGIE 1296
Query: 1089 GVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKD 1148
GVSKIKDGYNPATWMLEVT +QE LG+DF +IYK+S+LYRRNK LIK++S+PAPG+KD
Sbjct: 1297 GVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGTKD 1356
Query: 1149 LHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKK 1208
L+FATQY+Q FFTQ +ACLWKQ WSYWRNPPY+AVRFLFTT IAL FG +FWD+GT+ +
Sbjct: 1357 LYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGLIFWDLGTRRTR 1416
Query: 1209 QQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEI 1268
QQDL NAMGSMY AVLFLGVQNA SVQPV+ +ERTVFYRERAAGMYSALPYAF QAL+EI
Sbjct: 1417 QQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSALPYAFGQALVEI 1476
Query: 1269 PYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGI 1328
PY+F Q+V YGVIVY MIGFEWTA KF WY FFMF TLLYFT+YGMMAVA TPN HI+ I
Sbjct: 1477 PYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAVAATPNQHIASI 1536
Query: 1329 VAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDR-LESGET 1387
+A FY LWN+FSGFI+PR RIP+WWRWY W CPV+WTLYGLVASQFGDIQ LE+ +T
Sbjct: 1537 IAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGDIQSTLLENNQT 1596
Query: 1388 VEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433
V+QFL +FGFKHDFLGVVAAVV F VLF IFA IK FNFQKR
Sbjct: 1597 VKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1433 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.990 | 0.997 | 0.662 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.991 | 0.977 | 0.556 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.972 | 0.959 | 0.562 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.983 | 0.992 | 0.542 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.980 | 0.974 | 0.536 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.953 | 0.929 | 0.540 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.981 | 0.992 | 0.534 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.968 | 0.973 | 0.503 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.983 | 0.971 | 0.48 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.972 | 0.985 | 0.482 | 0.0 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4964 (1752.5 bits), Expect = 0., P = 0.
Identities = 951/1436 (66%), Positives = 1130/1436 (78%)
Query: 1 MESGNKVYKASNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRL 60
ME G ++ASNS+R S S+W+ +S FS SSR EEDDEEAL+WAALEKLPT++RL
Sbjct: 1 ME-GTSFHQASNSMRRNS-SVWKKDSGR-EIFSRSSR-EEDDEEALRWAALEKLPTFDRL 56
Query: 61 KKGILTSSR--GEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISL 118
+KGILT+S G NE+D+ LG Q+ ++++++L+KV D ++E+ L KLK RIDRVGI L
Sbjct: 57 RKGILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDL 116
Query: 119 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGI 178
PTIEVRF+HL VEAE +VG RALPTF NF +N + FLN+++++P+RKK TIL DVSGI
Sbjct: 117 PTIEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGI 176
Query: 179 IRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH 238
++PGRM LLLGPP+S D L+ +GRVTYNGH M+EFVPQRTAAYI Q+
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQN 236
Query: 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQE 298
D HIGEMTVRET A++AR QGVGSR++ML+EL+RREK A IKPDPDID+FMKA +T G++
Sbjct: 237 DVHIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEK 296
Query: 299 ASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGL 358
+V+TDYILKILGL+VCADTMVGD+MLRGISGGQKKRVTTGEM+VGP++ALFMDEISTGL
Sbjct: 297 TNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGL 356
Query: 359 DSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418
DSSTT+QIVNSLR +HI GT LISLLQPAPET++LFDDIILI++G+I+Y+GPR+HV+E
Sbjct: 357 DSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVE 416
Query: 419 FFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKV 478
FF+ MGF+CP RKGVADFLQEVTS+KDQ QYW ++EPYRF+ V+EFA+AFQ F++G+++
Sbjct: 417 FFETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRI 476
Query: 479 GDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMG 538
GDEL +PFDK KSH AALTTK YGV KEL+K SRE LLMKRNSFVY FK QL +M
Sbjct: 477 GDELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMA 536
Query: 539 LVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRF 598
+ MTLFFRT+M + + DG +YTGALFFI++M+MFNGM+E+ MTIAKLP+FYKQRDL F
Sbjct: 537 FLTMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLF 596
Query: 599 YPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALF 658
YP+W Y+L W+LKIPIS++E A+ F+TYYVIGFDPNVG NQMASALF
Sbjct: 597 YPAWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALF 656
Query: 659 RLIAATGRNIVVANTFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVN 718
+++AA GRN++VANTFG+FA SR+DIKKWWIW YW SP+MY QNAI+ N
Sbjct: 657 KMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILAN 716
Query: 719 EFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFL 778
EF G+SW + + N++E LGV LKSRGF AYWYW TLAL+FL
Sbjct: 717 EFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFL 776
Query: 779 NPFGKNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITF 838
N GK QAVI++E S+E + +Q S RS+ V+A +KKRGMVLPF+PHSITF
Sbjct: 777 NSLGKPQAVIAEEPASDETE------LQ---SARSEGVVEAGANKKRGMVLPFEPHSITF 827
Query: 839 DEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 898
D + YSVDMPQEM+ G ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 828 DNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 887
Query: 899 TXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPT 958
T PK Q+TFARISGYCEQ DIHSP+VTVYESL+YSAWLRLP EVD
Sbjct: 888 TGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNK 947
Query: 959 RKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
RK+FIEEVMELVEL PLRQALVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 948 RKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1007
Query: 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSS 1078
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI EAFDELFLLKRGG+EIYVG LG S+
Sbjct: 1008 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHEST 1067
Query: 1079 HLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKD 1138
HLI YFE I+G++KI +GYNPATWMLEV+ SQE ALG+DFA +YK+SELY+RNK LIK+
Sbjct: 1068 HLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKE 1127
Query: 1139 ISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTM 1198
+S+PAPGSKDL+F TQY+QSF TQCMA LWKQHWSYWRNPPY+AVRFLFT IAL FGTM
Sbjct: 1128 LSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTM 1187
Query: 1199 FWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALP 1258
FWD+G KTK +QDL NAMGSMYTAVLFLG+QNAASVQPVV++ERTVFYRE+AAGMYSA+P
Sbjct: 1188 FWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMP 1247
Query: 1259 YAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVA 1318
YAFAQ IEIPY+ VQ++ YG+IVYAMIGFEWTA KF W GMMAVA
Sbjct: 1248 YAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVA 1307
Query: 1319 MTPNHHISGIVAFAFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDI 1378
MTPNHHI+ +V+ AFYG+WN+FSGF CPV+WTLYGL+ASQFGDI
Sbjct: 1308 MTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDI 1367
Query: 1379 QDRL-ESGETVEQFLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
+ + +S +V+QF+R F+G++ GIK FNFQKR
Sbjct: 1368 TEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4159 (1469.1 bits), Expect = 0., P = 0.
Identities = 806/1449 (55%), Positives = 1020/1449 (70%)
Query: 3 SGNKVYKASNSLR--IGSTSIWRS--NSATLGAFSMSSRGEEDDEEALKWAALEKLPTYN 58
SG +V AS S R +G++ +R T F S R EEDD E L+WAA+E+LPT++
Sbjct: 16 SG-RVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME-LRWAAIERLPTFD 73
Query: 59 RLKKGIL--TSSRG--EANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRV 114
RL+KG+L TS+ G E ++D+ L P++++ +++ ++ + DNE+FL L+ R DRV
Sbjct: 74 RLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRV 133
Query: 115 GISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKD 174
GI +P IEVR+E+++VE + SRALPT FN N +E L ++LPS++K + ILKD
Sbjct: 134 GIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKD 193
Query: 175 VSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAY 234
+SGI++P RMTLLLGPP+S D +L++SGR+TY GH+ EFVPQ+T AY
Sbjct: 194 ISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAY 253
Query: 235 ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAAT 294
ISQHD H GEMTVRE L FS RC GVGSR++++SELSRREK GIKPDP ID FMK+ A
Sbjct: 254 ISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAI 313
Query: 295 EGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEI 354
GQE S+VTDY+LKILGLD+CAD + GD M RGISGGQKKR+TTGEM+VGPA+ALFMDEI
Sbjct: 314 SGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEI 373
Query: 355 STGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPRE 414
STGLDSSTTFQI +RQ +HI T +ISLLQPAPET++LFDDIIL+S+GQIVYQGPR+
Sbjct: 374 STGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRD 433
Query: 415 HVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYM 474
+VLEFF++ GF+CP+RKGVADFLQEVTS+KDQEQYW +E+PY +V+V +F+ F F+
Sbjct: 434 NVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHT 493
Query: 475 GQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQL 534
GQK+ E R+P+DK K+H AAL T+ YG+S EL KAC RE LLMKRNSFVY+FK Q+
Sbjct: 494 GQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQI 553
Query: 535 TIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQR 594
TIM L+ MT++ RT+MH ++ DG + GA+FF ++ +MFNG+AE+ T+ +LP+FYKQR
Sbjct: 554 TIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQR 613
Query: 595 DLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMA 654
D FYP WA+AL W+LKIP+S IE +W+ LTYY IGF P+ NQMA
Sbjct: 614 DFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMA 673
Query: 655 SALFRLIAATGRNIVVANTFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNA 714
+LFR + A GR V++N+ G+F +++DI+ W WAY+ SP+MY Q A
Sbjct: 674 LSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTA 733
Query: 715 IVVNEFLGNSWRKVLPNT---TEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXX 771
IV+NEFL W +T + +G +LKSRGFFT+ YW+W
Sbjct: 734 IVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFY 793
Query: 772 TLALSFLNPFGKNQAVISQESQSNEH-DNR--TGGTIQLSTSGRSKAEVKANHHKKRGMV 828
LAL +LNP G ++A + +E + + +NR G ++L++S +N KRGMV
Sbjct: 794 ILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSS--------SNKGPKRGMV 845
Query: 829 LPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 888
LPF+P S+ F+ + Y VDMP EM GV D+L LL V GAFRPG+LTAL+GVSGAGKT
Sbjct: 846 LPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKT 905
Query: 889 TLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWL 948
TLMDVLAGRKT PK Q TFAR+SGYCEQNDIHSP+VTVYESL+YSAWL
Sbjct: 906 TLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWL 965
Query: 949 RLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1008
RL ++D TR++F+EEVMELVEL PLR ++VGLPGV GLSTEQRKRLTIAVELVANPSI
Sbjct: 966 RLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSI 1025
Query: 1009 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI E+FDEL L+KRGGQ I
Sbjct: 1026 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVI 1085
Query: 1069 YVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSEL 1128
Y GSLG HS L++YFE + GV KI DGYNPATWML+VT PS E+ + +DFA I+ +S L
Sbjct: 1086 YAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSL 1145
Query: 1129 YRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFT 1188
YRRN+ LIKD+S P PGSKD++F T+YAQSF TQ AC WKQ+WSYWR+P Y+A+RFL T
Sbjct: 1146 YRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMT 1205
Query: 1189 TIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRE 1248
+I + FG +FW +GTKT+ +QDL N G+MY AVLFLG NAA+VQP ++IERTVFYRE
Sbjct: 1206 VVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYRE 1265
Query: 1249 RAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXX 1308
+AAGMYSA+PYA +Q +EI Y +Q+ Y +I+Y+MIG WT AKFLW
Sbjct: 1266 KAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIY 1325
Query: 1309 XXXXGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLY 1368
GMM +A+TPN+ I+GI F LWN+FSGF A PV+WTLY
Sbjct: 1326 FTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLY 1385
Query: 1369 GLVASQFGDIQDRLE-SGE---TVEQFLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXG 1424
GL+ SQ GD + SG ++ L+ FGF+HD G
Sbjct: 1386 GLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYG 1445
Query: 1425 IKVFNFQKR 1433
IK NFQ+R
Sbjct: 1446 IKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4116 (1454.0 bits), Expect = 0., P = 0.
Identities = 796/1416 (56%), Positives = 1003/1416 (70%)
Query: 32 FSMSSRGEEDDEEALKWAALEKLPTYNRLKKGIL--TSSRGEAN--EVDVCNLGPQERQR 87
F S R EEDD E L+WAALE+LPTY+RL+KG+L T G+ +VDV NL P+E++
Sbjct: 46 FGRSDRREEDDVE-LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKH 104
Query: 88 IIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNF 147
+++ ++K + DNE+FL +L+ R DRVGI +P IEVR+E+L+VE + SRALPT FN
Sbjct: 105 LMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNV 164
Query: 148 CANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXD 207
N IE L ++LPS+K+ + ILKD+SGII+P RMTLLLGPP+S D
Sbjct: 165 TLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLD 224
Query: 208 SSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEML 267
+L++SGR+TY GH+ EFVPQ+T AYISQHD H GEMTVRE+L FS RC GVG+R+++L
Sbjct: 225 DTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLL 284
Query: 268 SELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327
+ELSRRE+ AGIKPDP+ID FMK+ A GQE S+VTDY+LK+LGLD+CADT+VGD M RG
Sbjct: 285 TELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRG 344
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
ISGGQ+KR+TTGEM+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI T +ISLLQ
Sbjct: 345 ISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQ 404
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQE 447
PAPET++LFDDIIL+S+GQIVYQG R++VLEFF++MGF+CP+RKG+ADFLQEVTS+KDQE
Sbjct: 405 PAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQE 464
Query: 448 QYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKE 507
QYW +E PY +V+V +F+ F F+ GQ++ E R+P+DK K+H AAL T+ YG+S K+
Sbjct: 465 QYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKD 524
Query: 508 LLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFF 567
L KAC RE LLMKRNSFVY+FK Q+TIM L+AMT++FRT+MH ++ DG + GALFF
Sbjct: 525 LFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFF 584
Query: 568 IVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLT 627
++ +MFNGMAE+ T+ +LP+F+KQRD FYP WA+AL ++LKIP+S IE +W+ LT
Sbjct: 585 SLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALT 644
Query: 628 YYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVVANTFGSFAXXXXXXXXX 687
YY IGF P+ NQMA +LFR + A GR V+AN+ G+ A
Sbjct: 645 YYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGG 704
Query: 688 XXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT---TEPLGVQVLKSR 744
S++DI W W Y+ SP+MY Q A+V+NEFL W +T + +G +LKSR
Sbjct: 705 FIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSR 764
Query: 745 GFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804
GFFT+ YW+W +AL +LNP G ++A E ++H GT
Sbjct: 765 GFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGT 824
Query: 805 IQLSTSGRSKAEVKA--NHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLV 862
G S E+ + +H K+GMVLPF+P S+ F+ + Y VDMP EM GV D+L
Sbjct: 825 ------GGSVVELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQ 878
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT PK Q TFAR+
Sbjct: 879 LLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARV 938
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
SGYCEQNDIHSP+VTVYESL+YSAWLRL ++D+ TR+MF+EEVMELVEL PLR ++VGL
Sbjct: 939 SGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGL 998
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
PGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC
Sbjct: 999 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1058
Query: 1043 TIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATW 1102
TIHQPSIDI E+FDEL L+KRGGQ IY G+LG HS L++YFE I GV KIKDGYNPATW
Sbjct: 1059 TIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATW 1118
Query: 1103 MLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQ 1162
ML+VT PS E+ + +DFA I+ +S + RRN+ LIK++S P PGS DL+F T+YAQ F TQ
Sbjct: 1119 MLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQ 1178
Query: 1163 CMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTA 1222
AC WK +WS WR P Y+A+RFL T +I + FG +FW GTK +K+QDL N G+MY A
Sbjct: 1179 TKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAA 1238
Query: 1223 VLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIV 1282
VLFLG NAA+VQP V+IERTVFYRE+AAGMYSA+PYA +Q +EI Y +Q+ Y +I+
Sbjct: 1239 VLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLIL 1298
Query: 1283 YAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIVAFAFYGLWNVFSG 1342
Y+MIG++WT KF W GMM VA+TPN+ I+GI F WN+FSG
Sbjct: 1299 YSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSG 1358
Query: 1343 FXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLES----GE-TVEQFLRSFFG 1397
F A PV+WTLYG++ SQ GD +D + G+ +++ L++ FG
Sbjct: 1359 FLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGD-RDSIVHITGVGDMSLKTLLKNGFG 1417
Query: 1398 FKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
F +D GIK NFQ+R
Sbjct: 1418 FDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4018 (1419.5 bits), Expect = 0., P = 0.
Identities = 772/1423 (54%), Positives = 993/1423 (69%)
Query: 21 IWRSNSATLGAFSMSS--RGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANEVDVC 78
+W NSA AFS S+ + E +DEE L+WAAL++LPTY+R+++GI GE E+ +
Sbjct: 1 MW--NSAE-NAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIG 57
Query: 79 NLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVGS 138
NL E++ ++D+LV + D E+F +++ R D V + P IEVRF++L VE+ +VGS
Sbjct: 58 NLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGS 117
Query: 139 RALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXX 198
RALPT NF N+ EG L +++++ ++ LTIL +SG+IRP R+TLLLGPP+S
Sbjct: 118 RALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTL 177
Query: 199 XXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQ 258
++L+ SG++TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQ
Sbjct: 178 LLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQ 237
Query: 259 GVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318
GVG +++ML EL+RREK AGI PD D+D+FMK+ A G E S+V +Y++KILGLD CADT
Sbjct: 238 GVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADT 297
Query: 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK 378
+VGDEM++GISGGQKKR+TTGE++VGPA+ LFMDEIS GLDSSTT QI+ +R S H L+
Sbjct: 298 LVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALE 357
Query: 379 GTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQ 438
GTT+ISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF +GF CP RK VADFLQ
Sbjct: 358 GTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQ 417
Query: 439 EVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTT 498
EVTS+KDQ+QYW PYR+V +FA+AF+ + G+K+ +L +PFDKR +H AAL+T
Sbjct: 418 EVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALST 477
Query: 499 KIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDG 558
YGV K ELLK + + LMK+N+F+Y+FK QL ++ L+ MT+F RT MH ++I DG
Sbjct: 478 SQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDG 537
Query: 559 VIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYI 618
IY G+L+F +++I+FNG E+PM +AKLP+ YK RDL FYPSWAY L +W+L IP S I
Sbjct: 538 NIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSII 597
Query: 619 EVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVVANTFGSFA 678
E A WV +TYY IG+DP +QM+ LFR++ + GR+++VANTFGSFA
Sbjct: 598 ESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFA 657
Query: 679 XXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPN-TTEPLG 737
SR+ I WWIW YW SPLMYAQNA VNEFLG++W+K N T++ LG
Sbjct: 658 MLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLG 717
Query: 738 VQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVISQESQSNEH 797
+ +LK R F+ YWYW TL L+ LNP+GK QAV+S+E
Sbjct: 718 LALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDERE 777
Query: 798 DNRTGG--TIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPG 855
R G ++L + + + K RGMVLPF+P S++F I Y VD+P + G
Sbjct: 778 KKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQG 837
Query: 856 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKK 915
+LED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT PK+
Sbjct: 838 ILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKR 897
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
QETFARISGYCEQND+HSP +TV ESLL+SA LRLP ++DS T++ F+ EVMELVEL L
Sbjct: 898 QETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSL 957
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
ALVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 958 SGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1017
Query: 1036 TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKD 1095
TGRT+VCTIHQPSIDI E+FDEL +KRGG+ IY G LG+ S LIKYFE I GV KIK
Sbjct: 1018 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKP 1077
Query: 1096 GYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQY 1155
G+NPA WML+VTA ++E LG+DFA+IY++S L +RNK LI+ +SKP+ +K++ F T+Y
Sbjct: 1078 GHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRY 1137
Query: 1156 AQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNA 1215
+QS ++Q +ACLWKQ+ SYWRNP Y+AVRF +T +I+L GT+ W G+K QQ LFNA
Sbjct: 1138 SQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNA 1197
Query: 1216 MGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQS 1275
MGSMY AVLF+G+ NA + QPVVSIER V YRERAAGMYSALP+AFAQ IE PY+ QS
Sbjct: 1198 MGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQS 1257
Query: 1276 VTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIVAFAFYG 1335
Y I YAM FEW+A KFLW GMM A+TPNH+++ I+A FY
Sbjct: 1258 TIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYM 1317
Query: 1336 LWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQD--RLESG---ETVEQ 1390
LWN+FSGF A PV+WTLYGL+ SQ+GD + +L G V+Q
Sbjct: 1318 LWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQ 1377
Query: 1391 FLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
L G+KHD IK FNFQ+R
Sbjct: 1378 LLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3925 (1386.7 bits), Expect = 0., P = 0.
Identities = 769/1434 (53%), Positives = 989/1434 (68%)
Query: 18 STSIWRSNSATLGAFSMSSRGEE---DDEEALKWAALEKLPTYNRLKKGILTSSRGE--- 71
S S+ +++ F+ SSR + +DEEALKWA++EKLPTYNRL+ ++ GE
Sbjct: 20 SRSVSKASRNMEDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPEL-GEDDV 78
Query: 72 -ANE-----VDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRF 125
N+ VDV L +ERQ+ ID + KVA+ DNE L KL+NRIDRVGI LPT+EVR+
Sbjct: 79 YGNQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRY 138
Query: 126 EHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMT 185
+HL V+A+ Y G R+LP+ N N+ E L + I ++K LTILKDVSGI++P RMT
Sbjct: 139 DHLTVKADCYTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMT 198
Query: 186 LLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245
LLLGPP+S D SL VSG VTYNG+ ++EFVP +T+AYISQ+D H+G M
Sbjct: 199 LLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIM 258
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDY 305
TV+ETL FSARCQGVG+R+++L+EL+RREK AGI P+ D+D+FMKA+A +G ++S++TDY
Sbjct: 259 TVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDY 318
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
LKILGLD+C DT+VGD+M+RGISGGQKKRVTTGEM+VGP + LFMDEISTGLDSSTTFQ
Sbjct: 319 TLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQ 378
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGF 425
IV L+Q +H+ + T LISLLQPAPET+DLFDDIIL+S+GQIVYQGPR+H+LEFF+ GF
Sbjct: 379 IVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGF 438
Query: 426 ECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIP 485
+CP+RKG ADFLQEVTS+KDQEQYWV PYR++ V EFA +F+ F++G K+ +EL +P
Sbjct: 439 KCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVP 498
Query: 486 FDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLF 545
+DK KSH+AAL Y + K ELLK+C +E +LMKRNSF Y+FK Q+ I+ + TL+
Sbjct: 499 YDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLY 558
Query: 546 FRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYA 605
RT+MH + D IY G+L F +++ MFNG+AE+ MTI +LP+FYKQRDL F+P W Y
Sbjct: 559 LRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYT 618
Query: 606 LSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATG 665
L T++L IPIS E W+ +TYY IG+ P+ QMA+ +FR IA+T
Sbjct: 619 LPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTC 678
Query: 666 RNIVVANTFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW 725
R + +ANT G R +I WW WAYW SPL YA NAI VNE W
Sbjct: 679 RTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRW 738
Query: 726 -RKVLPNTTEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKN 784
K+ N+T LG VL F D WYW TLAL++L+P GK
Sbjct: 739 MNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKA 798
Query: 785 QAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYS 844
QA++ +E + E + G S V A K+GMVLPF P +++FD++ Y
Sbjct: 799 QAILPKE-EDEEAKGKAG-----SNKETEMESVSA----KKGMVLPFTPLAMSFDDVKYF 848
Query: 845 VDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXX 904
VDMP EM GV E +L LL GV+ AFRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 849 VDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 908
Query: 905 XXXXXXXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIE 964
PKKQETFARISGYCEQ DIHSP VTV ESL++SA+LRL EV + MF++
Sbjct: 909 GDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVD 968
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+VMELVEL LR A+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 969 QVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1028
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084
IVMR VRNTVDTGRTVVCTIHQPSIDI EAFDEL L+KRGG IY G LGR+S +++YF
Sbjct: 1029 IVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYF 1088
Query: 1085 EGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAP 1144
E GV KI + YNPATWMLE ++ + E LG+DFA++YK+S L +RNKAL++++S P
Sbjct: 1089 ESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQ 1148
Query: 1145 GSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGT 1204
G+ DL+FATQ++Q+ + Q +CLWKQ W+YWR+P Y+ VRF+FT +L G++FW +G
Sbjct: 1149 GATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGG 1208
Query: 1205 KTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQA 1264
K QDL +G++Y AV+F+G+ N ++VQP+V++ERTVFYRE+AAGMYSA+PYA +Q
Sbjct: 1209 KRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQV 1268
Query: 1265 LIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHH 1324
E+PY+ +Q+ Y +I+Y+M+GFEW A+KFLW GMM V++TPN
Sbjct: 1269 TCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQ 1328
Query: 1325 ISGIVAFAFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLE- 1383
++ I A AFYG++N+FSGF CPV+WT+YGL+ SQ+GD++ +
Sbjct: 1329 VASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIAL 1388
Query: 1384 ----SGETVEQFLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
G TV+Q+++ +GF+ D IK NFQ R
Sbjct: 1389 LGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3895 (1376.2 bits), Expect = 0., P = 0.
Identities = 753/1393 (54%), Positives = 976/1393 (70%)
Query: 18 STSIWRSNSATLGAFSMSSRGEE---DDEEALKWAALEKLPTYNRLKKGILTS------- 67
S S+ R++ FS SR + DDEEALKWAA+EKLPTY+RL+ ++ +
Sbjct: 22 SRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVY 81
Query: 68 -SRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFE 126
++ + EVDV L ++RQ+ ID + KVA+ DNE L KL+NRIDRVGI LPT+EVR+E
Sbjct: 82 GNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYE 141
Query: 127 HLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTL 186
HL ++A+ Y G+R+LPT N N+ E L + I ++K LTILKD+SG+I+PGRMTL
Sbjct: 142 HLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTL 201
Query: 187 LLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 246
LLGPP+S D SL+VSG +TYNG+ +DEFVP++T+AYISQ+D H+G MT
Sbjct: 202 LLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMT 261
Query: 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYI 306
V+ETL FSARCQGVG+R+++L+EL+RREK AGI P+ D+D+FMKA+A +G + S+VTDY
Sbjct: 262 VKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYT 321
Query: 307 LKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI 366
LKILGLD+C DT+VGD+M+RGISGGQKKRVTTGEM+VGP + LFMDEISTGLDSSTTFQI
Sbjct: 322 LKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQI 381
Query: 367 VNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFE 426
V L+Q +H+ + T L+SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+++LEFF+ GF+
Sbjct: 382 VKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFK 441
Query: 427 CPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPF 486
CP+RKG ADFLQEVTS+KDQEQYWV+ PY ++ V EFA ++ F++G K+ +EL +PF
Sbjct: 442 CPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPF 501
Query: 487 DKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFF 546
DK + H+AAL Y VSK+ELLK+C +E LLM+RN+F Y+FK Q+ I+ + TLF
Sbjct: 502 DKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFL 561
Query: 547 RTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYAL 606
RT+M+ + D +Y GAL F +++ MFNG AE+ M +++LP+FYKQRDL FYPSW ++L
Sbjct: 562 RTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSL 621
Query: 607 STWILKIPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGR 666
T++L IP S +E W+ +TYY IGF P+ QMA++LFRLIA+ R
Sbjct: 622 PTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCR 681
Query: 667 NIVVANTFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWR 726
+++ANT G+ + I WW WAYW SPL YA N +VVNE W
Sbjct: 682 TMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWM 741
Query: 727 KVLP--NTTEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKN 784
+ N+T LG VL + + WYW TLAL++LNP GK
Sbjct: 742 NKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKK 801
Query: 785 QAVISQE--------------SQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLP 830
++ +E S S NR G S S AE K+GMVLP
Sbjct: 802 AGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLP 861
Query: 831 FKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 890
F P +++FD++ Y VDMP EM GV E +L LL GV+GAFRPGVLTALMGVSGAGKTTL
Sbjct: 862 FTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTL 921
Query: 891 MDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL 950
MDVLAGRKT PK QETFARISGYCEQ DIHSP VTV ESL++SA+LRL
Sbjct: 922 MDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRL 981
Query: 951 PLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1010
P EV + MF+++VMELVEL+ LR ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 982 PKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1041
Query: 1011 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070
MDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDI EAFDEL L+KRGGQ IY
Sbjct: 1042 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYA 1101
Query: 1071 GSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYR 1130
G LG++S +++YFE GVSKI + YNPATWMLE ++ + E L +DFA++Y S L++
Sbjct: 1102 GPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQ 1161
Query: 1131 RNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTI 1190
RNKAL+K++S P G+ DL+FATQ++Q+ + Q +CLWKQ W+YWR+P Y+ VRF+FT
Sbjct: 1162 RNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLA 1221
Query: 1191 IALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERA 1250
+L GT+FW +G DL +G++Y A++F+G+ N ++VQP+V++ERTVFYRERA
Sbjct: 1222 TSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERA 1281
Query: 1251 AGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXX 1310
AGMYSA+PYA +Q E+PY+ +Q+V Y +IVYAM+GFEW A KF W
Sbjct: 1282 AGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWT 1341
Query: 1311 XXGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGL 1370
GMM V++TPN ++ I A AFYG++N+FSGF CPV+WT+YGL
Sbjct: 1342 YYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGL 1401
Query: 1371 VASQFGDIQDRLE 1383
+ SQ+GD++ R++
Sbjct: 1402 IVSQYGDVETRIQ 1414
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3879 (1370.5 bits), Expect = 0., P = 0.
Identities = 764/1429 (53%), Positives = 981/1429 (68%)
Query: 11 SNSLRIGSTSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRG 70
S SL + SNS + S ++ DEEALKWAALEKLPT+ RL+ I+
Sbjct: 5 SRSLSKSLGELLASNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTII---HP 61
Query: 71 EANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNV 130
+ VDV LG +RQ+ ID + KV + DNE+FL K +NRIDRV I LPT+EVRFE + +
Sbjct: 62 HEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTI 121
Query: 131 EAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGP 190
EA ++G RALPT N NI E L + ++ +TIL+DVSGII+P RMTLLLGP
Sbjct: 122 EANCHIGKRALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGP 181
Query: 191 PASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 250
P+S D SL+V+GRVTYNGH ++EFVPQ+T+AYISQ+D H+G MTV+ET
Sbjct: 182 PSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQET 241
Query: 251 LAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL 310
L FSARCQGVG+R+++LSEL RREK AGI P+P++D+FMK+ A ++S++TDY L+IL
Sbjct: 242 LDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRIL 301
Query: 311 GLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSL 370
GLD+C DT+VGDEM+RGISGGQKKRVTTGEM+VGP + LFMDEISTGLDSSTT+QIV L
Sbjct: 302 GLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL 361
Query: 371 RQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKR 430
++ + T L+SLLQPAPET++LFDDIIL+S+GQIVYQGPR+HVL FF+ GF+CP R
Sbjct: 362 QEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDR 421
Query: 431 KGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRK 490
KG ADFLQEVTSRKDQEQYW ++PY +++V EF+ F+ F++G + +L +P+D+ K
Sbjct: 422 KGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFK 481
Query: 491 SHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKM 550
SH A+L K + V K +L K C RELLLMKRN+F YI K Q+ IM L+A T++ RT+M
Sbjct: 482 SHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEM 541
Query: 551 HRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWI 610
+ +DG +Y GAL F +++ MFNG AE+ + I +LP+FYKQRDL F+P W ++L T++
Sbjct: 542 GTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFL 601
Query: 611 LKIPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVV 670
L IPIS E VWV +TYY+IGF P + QMA +FR IAAT R++++
Sbjct: 602 LGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMIL 661
Query: 671 ANTFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW-RKVL 729
ANT G+ R +I KWW WAYW SP+ Y +A+ VNE L W +
Sbjct: 662 ANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPS 721
Query: 730 PNTTEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVIS 789
+ + LG+ VL+ FTD WYW TLAL+FLNP K QAV+S
Sbjct: 722 SDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVS 781
Query: 790 QESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQ 849
+E N +NR +SK+ + KRGMVLPF P +++FD + Y VDMP+
Sbjct: 782 KE---NTEENRA------ENGSKSKS-IDV----KRGMVLPFTPLTMSFDNVNYYVDMPK 827
Query: 850 EMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXX 909
EM GV +DKL LL V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 828 EMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 887
Query: 910 XXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL 969
PK+QETFARISGYCEQNDIHSP VTV ESL+YSA+LRLP EV + F++EVMEL
Sbjct: 888 SGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMEL 947
Query: 970 VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
VEL L+ A+VGLPG++GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT
Sbjct: 948 VELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1007
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRG 1089
VRNTVDTGRTVVCTIHQPSIDI EAFDEL LLKRGGQ IY G LG++S +I+YF+ I G
Sbjct: 1008 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHG 1067
Query: 1090 VSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDL 1149
V KIK+ YNPATWMLEV++ + E L IDFA+ YK+S LY++NK L+K++S P G+ DL
Sbjct: 1068 VPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDL 1127
Query: 1150 HFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQ 1209
+F+T+++QS Q +CLWKQ +YWR P Y+ RF FT A+ G++FW +GTK +
Sbjct: 1128 YFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENA 1187
Query: 1210 QDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIP 1269
DL +G+MY AVLF+GV N++SVQP++++ER+VFYRERAA MYSALPYA AQ + EIP
Sbjct: 1188 NDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIP 1247
Query: 1270 YIFVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIV 1329
Y+ +Q+ Y +I+YAM+ FEWT AKF W GMM VA+TPN ++ +
Sbjct: 1248 YVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVF 1307
Query: 1330 AFAFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLE-----S 1384
A AFYGL+N+FSGF CPV+WT+YGL+ SQ+GD++D ++ +
Sbjct: 1308 AGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMAN 1367
Query: 1385 GETVEQFLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
T++ ++ + +G+ D GI+ NFQ+R
Sbjct: 1368 DPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3611 (1276.2 bits), Expect = 0., P = 0.
Identities = 716/1421 (50%), Positives = 939/1421 (66%)
Query: 31 AFSMSSRGE--EDDEEALKWAALEKLP-----TYN----RLKKGILTSSRGEANEV---D 76
+F+ S E E DEE L+WAA+ +LP T+N R + TS + N V D
Sbjct: 21 SFARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTID 80
Query: 77 VCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYV 136
V L +R+ ++ + + +D DN + L +K R+DRVG+ +P IEVRFE+LN+EA+
Sbjct: 81 VKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQA 140
Query: 137 GSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXX 196
G+RALPT N + E L+S+ I+ RK L ILKD+SGII+PGRMTLLLGPP S
Sbjct: 141 GTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKS 200
Query: 197 XXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR 256
D SL+ +G +TYNG ++++F +RT+AYISQ DNHI E+TVRETL F+AR
Sbjct: 201 TLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAAR 260
Query: 257 CQGVGSRHE-MLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVC 315
CQG + +L+R EK GI+P +ID FMKAA+ +G++ SV TDY+LK+LGLDVC
Sbjct: 261 CQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVC 320
Query: 316 ADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIH 375
+DTMVG++M+RG+SGGQ+KRVTTGEM VGP + LFMDEISTGLDSSTTFQIV +R +H
Sbjct: 321 SDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVH 380
Query: 376 ILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVAD 435
++ T L++LLQPAPET+DLFDD+IL+S+G +VYQGPRE V+ FF+ +GF P RKGVAD
Sbjct: 381 LMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVAD 440
Query: 436 FLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAA 495
FLQEVTS+KDQ QYW +PY+F+ V + A AF+ G +L PFDK+ + +A
Sbjct: 441 FLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSA 500
Query: 496 LTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSI 555
L + +S E LK C RELLL+KR+ F+Y F+ CQ+ +GLV T+F +T++H S
Sbjct: 501 LCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSE 560
Query: 556 TDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPI 615
G Y LFF ++ +MFNG +E+P+ I++LP+FYKQRD F+P+W++++++W+L++P
Sbjct: 561 QFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPY 620
Query: 616 SYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVVANTFG 675
S +E VW + Y+ +G P+ G +QMA LFR++A+ R++V+ANTFG
Sbjct: 621 SVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFG 680
Query: 676 SFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEP 735
S A + DIK WW+W +W SPL Y Q AI VNEF W +
Sbjct: 681 SAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTT 740
Query: 736 LGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVISQESQSN 795
+G+ +LK R F T+ YWYW TLAL++LNP K +AV+ + N
Sbjct: 741 IGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDDP--N 798
Query: 796 EHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPG 855
E T ++ + + +E K+GM+LPFKP ++TF + Y VDMP+EM G
Sbjct: 799 EE------TALVADANQVISE-------KKGMILPFKPLTMTFHNVNYYVDMPKEMRSQG 845
Query: 856 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKK 915
V E +L LL+ VSG F PGVLTAL+G SGAGKTTLMDVLAGRKT PK+
Sbjct: 846 VPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKE 905
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
Q+TFARISGY EQNDIHSP VTV ESL +SA LRLP E+ +K F+E+VM LVEL+ L
Sbjct: 906 QQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTL 965
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
R ALVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD
Sbjct: 966 RYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1025
Query: 1036 TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKD 1095
TGRTVVCTIHQPSIDI EAFDEL L+KRGGQ IY G LG HS L+ YF+GI GV I
Sbjct: 1026 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISS 1085
Query: 1096 GYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQY 1155
GYNPATWMLEVT P+ E ++FAD+YK S+ +R +A IK +S P GS+ + F ++Y
Sbjct: 1086 GYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRY 1145
Query: 1156 AQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNA 1215
+Q+ +Q + CLWKQ+ YWR+P Y+ VR +FTTI A GT+FWD+G+K QDL
Sbjct: 1146 SQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITV 1205
Query: 1216 MGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQS 1275
MG++Y+A LFLGV NA+SVQP+VSIERTVFYRE+AAGMY+ +PYA AQ L+EIPYI Q+
Sbjct: 1206 MGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQT 1265
Query: 1276 VTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIVAFAFYG 1335
+ YGVI Y IGFE T +KF+ GMMAV +TPN H++ +++ AFY
Sbjct: 1266 ILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYS 1325
Query: 1336 LWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLESG---ETVEQFL 1392
LWN+ SGF CPV+WTL G++ SQ GD++ + TV++F+
Sbjct: 1326 LWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLFHGTVKEFI 1385
Query: 1393 RSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
+FG+K + +K NFQ+R
Sbjct: 1386 EYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3408 (1204.7 bits), Expect = 0., P = 0.
Identities = 684/1425 (48%), Positives = 907/1425 (63%)
Query: 19 TSIWRSNSATLGAFSMSSRGEEDDEEALKWAALEKLPTYNRLKKGILTSSRGEANE---- 74
TS +RS+S+ + + D E AL+WA +E+LPT R++ +L E
Sbjct: 32 TSSFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRR 91
Query: 75 -VDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAE 133
VDV LG ER +I+KL+K + DN + L K++ RIDRVG+ LPTIEVR+E L V AE
Sbjct: 92 VVDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAE 151
Query: 134 A-YVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPA 192
V +ALPT +N ++ + K + I+ DV+GII+PGR+TLLLGPP+
Sbjct: 152 CEVVEGKALPTLWNTAKRVLSELVKLTGAKTHEAK-INIINDVNGIIKPGRLTLLLGPPS 210
Query: 193 SXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 252
+++L+ SG ++YNGH +DEFVPQ+T+AYISQ+D HI EMTVRET+
Sbjct: 211 CGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVD 270
Query: 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312
FSARCQGVGSR +++ E+S+REK GI PD ++D +MKA + EG + S+ TDYILKILGL
Sbjct: 271 FSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGL 330
Query: 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
D+CA+ ++GD M RGISGGQKKR+TT EM+VGP +ALFMDEI+ GLDSST FQIV SL+Q
Sbjct: 331 DICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQ 390
Query: 373 SIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKG 432
HI T L+SLLQPAPE+YDLFDDI+L++ G+IVY GPR VL FF+ GF CP+RKG
Sbjct: 391 FAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKG 450
Query: 433 VADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSH 492
VADFLQEV S+KDQ QYW H++ PY FV+V+ + F+ +G+K+ D L P+D+ KSH
Sbjct: 451 VADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSH 510
Query: 493 RAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552
+ AL+ +Y + EL AC+SRE LLMKRN FVYIFK QL + + MT+F RT+M
Sbjct: 511 KDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGI 570
Query: 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILK 612
D I G Y ALFF +++++ +G E+ MT +L +FYKQ+ L FYP+WAYA+ +LK
Sbjct: 571 D-IIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLK 629
Query: 613 IPISYIEVAVWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVVAN 672
+P+S+ E VW L+YYVIG+ P + + ++FR +AA + +V +
Sbjct: 630 VPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASI 689
Query: 673 TFGSFAXXXXXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT 732
T GSF + W W +W +PL Y + + VNEFL W ++ PN
Sbjct: 690 TAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNN 749
Query: 733 TEPLGVQVLKSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVISQES 792
LG +L++RG + Y YW TLAL+FL ++A+ISQ+
Sbjct: 750 FT-LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDK 808
Query: 793 QSNEHDNRTGGTIQLSTSGRSK-AEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEM 851
S E T S ++ + VK K MVLPFKP ++TF ++ Y VDMP EM
Sbjct: 809 LS-ELQGTEKSTEDSSVRKKTTDSPVKTEEEDK--MVLPFKPLTVTFQDLNYFVDMPVEM 865
Query: 852 MRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXX 911
G + KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT
Sbjct: 866 RDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISG 925
Query: 912 XPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
PK QETFAR+SGYCEQ DIHSPN+TV ES++YSAWLRL E+D+ T+ F+++V+E +E
Sbjct: 926 FPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIE 985
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
L+ ++ +LVG+ GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+
Sbjct: 986 LDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1045
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVS 1091
N DTGRT+VCTIHQPSIDI EAFDEL LLKRGG+ IY G LG+HS H+I+YFE + +
Sbjct: 1046 NVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIP 1105
Query: 1092 KIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHF 1151
KIKD +NPATWML+V++ S E LG+DFA IY S LY+RN L+K +S+P GS D+ F
Sbjct: 1106 KIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQF 1165
Query: 1152 ATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQD 1211
+AQS++ Q + LWK + SYWR+P Y+ +R + T + +L FG +FW G QQ
Sbjct: 1166 KRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQS 1225
Query: 1212 LFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYI 1271
+F G++Y VLFLG+ N AS ER V YRER AGMYSA YA Q + EIPYI
Sbjct: 1226 MFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYI 1285
Query: 1272 FVQSVTYGVIVYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIVAF 1331
F+Q+ + ++ Y MIGF +A K W M V++TPN ++ I+
Sbjct: 1286 FIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQS 1345
Query: 1332 AFYGLWNVFSGFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLES-GE--TV 1388
FY +N+FSGF P SWTL G ++SQ+GDI + + G+ TV
Sbjct: 1346 LFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTV 1405
Query: 1389 EQFLRSFFGFKHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
+FL+ +FGF HD + NFQ+R
Sbjct: 1406 ARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3399 (1201.6 bits), Expect = 0., P = 0.
Identities = 683/1415 (48%), Positives = 909/1415 (64%)
Query: 33 SMSSRGEEDD-----EEALKWAALEKLPTYNRLKKGILTSSRGEANE-----VDVCNLGP 82
S SSR E +D E AL+WA +++LPT+ RL+ L GE E VDV LG
Sbjct: 7 SSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSS-LVDKYGEGTEKGKKVVDVTKLGA 65
Query: 83 QERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEA-YVGSRAL 141
ER +I+KL+K + DN + L K++ R++RVG+ P+IEVR+EHL VEA V +AL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 142 PTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXX 201
PT +N ++ L + + + ++ IL DVSGII PGR+TLLLGPP
Sbjct: 126 PTLWNSLKHVFLDLLKLSGVR-TNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 202 XXXXXDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 261
+++L+ G ++YNGH ++E VPQ+T+AYISQHD HI EMT RET+ FSARCQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 262 SRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321
SR +++ E+S+REK GI PDP+ID +MKA + +G + S+ TDYILKILGLD+CA+T+VG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
+ M RGISGGQKKR+TT EM+VGP +ALFMDEI+ GLDSST FQI+ SL+Q HI T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVT 441
+SLLQPAPE+YDLFDDI+L+++G+IVY GPR+ VL+FF+ GF+CP+RKGVADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 442 SRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIY 501
S+KDQ QYW+H+ P+ FV+V + F+ +G+K+ + L P+D K+H+ AL+ +Y
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 502 GVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIY 561
+ K EL +AC+SRE LLMKRN FVY+FK QL + ++ MT+F RT+M D I G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSY 543
Query: 562 TGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVA 621
LFF ++++ +G+ E+ MT+ +L +FYKQ+ L FYP+WAYA+ +LKIP+S+ E
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 622 VWVFLTYYVIGFDPNVGXXXXXXXXXXXXNQMASALFRLIAATGRNIVVANTFGSFAXXX 681
VW LTYYVIG+ P + + ++FR IAA + V A T GSF
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 682 XXXXXXXXXSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVL 741
D+ W W +W +P+ YA+ + VNEFL W+K+ P T LG +L
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTIL 722
Query: 742 KSRGFFTDAYWYWXXXXXXXXXXXXXXXXXTLALSFLNPFGKNQAVISQESQSNEHDNRT 801
+SRG D Y YW TLALSFL ++ +ISQ+ S +
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD 782
Query: 802 GGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKL 861
+ + + +K N + M+LPFKP +ITF ++ Y VD+P EM G E KL
Sbjct: 783 SS---VKKNKPLDSSIKTNEDPGK-MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKL 838
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFAR 921
LL+ ++GAFRPGVLTALMG+SGAGKTTL+DVLAGRKT K QETFAR
Sbjct: 839 QLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFAR 898
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
+SGYCEQ DIHSP++TV ESL+YSAWLRL E++ T+ F+++V+E +EL ++ ALVG
Sbjct: 899 VSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVG 958
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT+V
Sbjct: 959 VAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIV 1018
Query: 1042 CTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPAT 1101
CTIHQPSI I EAFDEL LLKRGG+ IY G LG+HSS +I+YF+ I GV+KI+D YNPAT
Sbjct: 1019 CTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPAT 1078
Query: 1102 WMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFT 1161
WMLEVT+ S ET L +DFA IY S+LY+ N L+K++SKP GS DLHF +AQ+++
Sbjct: 1079 WMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWE 1138
Query: 1162 QCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYT 1221
Q +CLWK SYWR+P Y+ +R T I + FG +FW+ G K QQ+LF +G++Y
Sbjct: 1139 QFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYG 1198
Query: 1222 AVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVI 1281
VLF+G+ N S ER V YRER AGMYSA YA AQ + EIPYIF+QS + ++
Sbjct: 1199 LVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIV 1258
Query: 1282 VYAMIGFEWTAAKFLWXXXXXXXXXXXXXXXGMMAVAMTPNHHISGIVAFAFYGLWNVFS 1341
+Y MIGF + +K W M +++TPN ++ I+ F+ +N+F+
Sbjct: 1259 IYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFA 1318
Query: 1342 GFXXXXXXXXXXXXXXXXACPVSWTLYGLVASQFGDIQDRLES-GET--VEQFLRSFFGF 1398
GF P SWTL +SQ+GDI ++ + GET V FL +FGF
Sbjct: 1319 GFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGF 1378
Query: 1399 KHDXXXXXXXXXXXXXXXXXXXXXXGIKVFNFQKR 1433
HD + NFQKR
Sbjct: 1379 HHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6056 | 0.9678 | 0.9493 | N/A | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.7187 | 0.9895 | 0.9964 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.7111 | 0.9860 | 0.9805 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7466 | 0.9867 | 0.9860 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7398 | 0.9846 | 0.9825 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6974 | 0.9972 | 0.9807 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.7132 | 0.9853 | 0.9778 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3172 | 0.8004 | 0.8637 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5308 | 0.9818 | 0.9723 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PtrPDR12 | pleiotropic drug resistance, ABC transporter family protein (1424 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1433 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-96 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-74 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-69 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-53 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-53 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-47 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-32 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-25 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-16 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-15 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-15 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-14 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-13 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-12 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-11 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-08 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-06 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.001 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.001 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.001 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.001 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.002 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.002 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.002 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.003 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.004 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.004 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.004 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2084 bits (5402), Expect = 0.0
Identities = 884/1465 (60%), Positives = 1100/1465 (75%), Gaps = 42/1465 (2%)
Query: 11 SNSLRIGSTSIWRSNSATLGAFSM------SSRGEEDDEEALKWAALEKLPTYNRLKKGI 64
+ R S S+ RS+ FS + ++DEEALKWAA+EKLPTY+RL+ I
Sbjct: 6 GSMRRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSI 65
Query: 65 LTS--------SRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGI 116
+ S ++ EVDV L +RQ+ ID + KVA+ DNE+FL K +NRIDRVGI
Sbjct: 66 MKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGI 125
Query: 117 SLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVS 176
LPT+EVRFEHL VEA+ Y+GSRALPT N NI E L + I ++K LTILKD S
Sbjct: 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDAS 185
Query: 177 GIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYIS 236
GII+P RMTLLLGPP+SGKTTLLLALAGKLD SL+VSG +TYNG+ ++EFVP++T+AYIS
Sbjct: 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYIS 245
Query: 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEG 296
Q+D H+G MTV+ETL FSARCQGVG+R+++LSEL+RREK AGI P+ ++D+FMKA A EG
Sbjct: 246 QNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEG 305
Query: 297 QEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEIST 356
++S++TDY LKILGLD+C DT+VGDEM+RGISGGQKKRVTTGEM+VGP + LFMDEIST
Sbjct: 306 VKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365
Query: 357 GLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHV 416
GLDSSTT+QIV L+Q +H+ + T L+SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+H+
Sbjct: 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHI 425
Query: 417 LEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQ 476
LEFF+ GF+CP+RKG ADFLQEVTS+KDQEQYW + +PYR+++V EFA+ F+ F++G
Sbjct: 426 LEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGM 485
Query: 477 KVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTI 536
++ +EL +PFDK +SH+AAL Y V K ELLKAC +E LLMKRN+FVY+FK Q+ I
Sbjct: 486 QLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIII 545
Query: 537 MGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDL 596
+ +A T+F RT+MH + DG +Y GAL F +++ MFNG AE+ + I +LP+FYKQRDL
Sbjct: 546 VAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDL 605
Query: 597 RFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASA 656
F+P W + L T++L IPIS IE VWV +TYY IGF P R F+Q LL+ + QMA+
Sbjct: 606 LFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAG 665
Query: 657 LFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIV 716
+FRLIA+ R +++ANT G+ LLL+F+LGGF+L + +I WW WAYW SPL Y NA+
Sbjct: 666 IFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALA 725
Query: 717 VNEFLGNSW-RKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLAL 775
VNE W K+ + + LG VL FTD WYW+G+GAL GF +LFN FTLAL
Sbjct: 726 VNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLAL 785
Query: 776 SFLNPFGKNQAVISQE--------------SQSNEHDNRTGGTIQLSTS--------GRS 813
++LNP GK QA+IS+E S S+ N T S S
Sbjct: 786 TYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDS 845
Query: 814 KAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRP 873
E KRGMVLPF P +++FD++ Y VDMP EM GV ED+L LL V+GAFRP
Sbjct: 846 SLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHS 933
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISG+PKKQETFARISGYCEQNDIHS
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
P VTV ESL+YSA+LRLP EV + MF++EVMELVEL+ L+ A+VGLPGV+GLSTEQR
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVE 1053
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI E
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 1054 AFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQET 1113
AFDEL L+KRGGQ IY G LGR+S +I+YFE I GV KIK+ YNPATWMLEV++ + E
Sbjct: 1086 AFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145
Query: 1114 ALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWS 1173
LGIDFA+ YKSS LY+RNKAL+K++S P PG+ DL+FATQY+QS + Q +CLWKQ W+
Sbjct: 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205
Query: 1174 YWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAAS 1233
YWR+P Y+ VRF FT AL GT+FW +GTK DL +G+MY AVLF+G+ N ++
Sbjct: 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCST 1265
Query: 1234 VQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAA 1293
VQP+V++ERTVFYRERAAGMYSALPYA AQ + EIPY+ +Q+ Y +IVYAM+ FEWTAA
Sbjct: 1266 VQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAA 1325
Query: 1294 KFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIW 1353
KF W+ F FF+ LYFTYYGMM V++TPN ++ I A AFYGL+N+FSGF IPR +IP W
Sbjct: 1326 KFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385
Query: 1354 WRWYYWACPVSWTLYGLVASQFGDIQDRLE-----SGETVEQFLRSFFGFKHDFLGVVAA 1408
W WYYW CPV+WT+YGL+ SQ+GD++D ++ T++ +++ +G+ DF+G VAA
Sbjct: 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAA 1445
Query: 1409 VVFAFPVLFALIFAVGIKVFNFQKR 1433
V+ F V FA IFA I+ NFQ R
Sbjct: 1446 VLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1196 bits (3095), Expect = 0.0
Identities = 409/1436 (28%), Positives = 655/1436 (45%), Gaps = 151/1436 (10%)
Query: 99 DNEEFLLKLKNRIDRVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFL 156
+ + ++ + ID I + V +++L+ A S PTF N I+
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 157 NSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR-VSGR 215
+ K ILK + G+I+PG +T++LG P SG +TLL +A D V G
Sbjct: 63 RKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 216 VTYNGHDMDEFVPQRTA--AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRR 273
+TY+G +E Y ++ D H +TV ETL F+ARC+ +R + +S
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 274 EKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQK 333
+ + D + GL +T VG++ +RG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 334 KRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393
KRV+ E +G A+ D + GLDS+T + + +L+ S +IL T L+++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 394 DLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHK 453
+LFD +I++ +G +Y GP + ++F+ MGF+CP R+ ADFL +TS + Q
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 454 EEP-YRFVTVKEFADAFQVFYMGQKVGDELRIPFDK----------RKSH-----RAALT 497
E+ R T +EF ++ ++ E+ D+ R+SH +
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 498 TKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITD 557
+ Y VS +K C++R L MK N +F + IM L+ ++F+ + +D
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSD 449
Query: 558 GVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISY 617
GALFF +L F+ + EI PI K R Y A A+++ I +IP
Sbjct: 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 618 IEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSF 677
IE V+ + Y+++ F GR F L+L S LFR I A + + A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 678 ALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWR----------- 726
LL L + GF + R + W W Y+ +PL YA +++VNEF G +
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 727 KVLPNTTEPLGVQVLKSRGFFTD-------AY-----WYWLGLGALAGFILLFNFGFTLA 774
L T + V + + D ++ W G + GF + F F + L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 775 LSFLNPFGKNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPH 834
F + ++ + + + G S + G VL
Sbjct: 690 TEFNKGAKQKGEILVFR-RGSLKRAKKAGETSASNKN----------DIEAGEVLGSTDL 738
Query: 835 SITFDEIAYSVDMPQEMMRP-----------GVLEDKLVLLNGVSGAFRPGVLTALMGVS 883
+ D++ DM +E + ++K V+LN V G +PG LTALMG S
Sbjct: 739 TDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGAS 798
Query: 884 GAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 943
GAGKTTL++VLA R T G I+G + +F R GY +Q D+H P TV ESL
Sbjct: 799 GAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLR 858
Query: 944 YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELV 1003
+SA+LR P V + ++EEV++L+E+ A+VG+PG GL+ EQRKRLTI VELV
Sbjct: 859 FSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELV 917
Query: 1004 ANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062
A P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS + E FD L LL+
Sbjct: 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQ 977
Query: 1063 RGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADI 1122
+GGQ +Y G LG +S +I YFE G K + NPA WMLEV + D+ ++
Sbjct: 978 KGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEV 1036
Query: 1123 YKSSELYRRNKALIKDISKPAPGSKDLHFAT---QYAQSFFTQCMACLWKQHWSYWRNPP 1179
+++S Y+ K + + ++D + +YA S + Q LW+ YWR P
Sbjct: 1037 WRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPD 1096
Query: 1180 YSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVS 1239
Y +F T AL G F+ +GT Q L N M +++ A + + P V+
Sbjct: 1097 YLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVA 1153
Query: 1240 IERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAK----- 1294
RER + +S L + AQ +EIPY V + I Y +GF W A+K
Sbjct: 1154 QRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVH 1213
Query: 1295 --FLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPI 1352
+ + LYF+ G M ++ PN + ++A + + F G + P +R+P
Sbjct: 1214 ERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG 1273
Query: 1353 WWRWYYWACPVSWTLYGLVASQFGDIQDRLE----------SGETVEQFLRSF------- 1395
+W + Y P ++ + L+++ D+ + SG+T ++++ +
Sbjct: 1274 FWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGY 1333
Query: 1396 --------------FGFKHDFLGVVAAVVF----AFPVLFALIFAVGIKVFNFQKR 1433
+ + +DFL +++ F + A IF I F
Sbjct: 1334 LLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 3e-98
Identities = 111/239 (46%), Positives = 142/239 (59%), Gaps = 47/239 (19%)
Query: 833 PHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 892
+T+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 893 VLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL 952
VLAGRKT G I+G I+I+G P + F R +GY EQ D+HSPN+TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1013 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS I E FD L LLKRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 323 bits (829), Expect = 3e-96
Identities = 176/592 (29%), Positives = 280/592 (47%), Gaps = 47/592 (7%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGSIMISGYPKKQETFAR 921
LL VSG +PG L A+MG SGAGKTTLM+ LA R G SGS++++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
IS Y +Q+D+ P +TV E L++ A LR+P V ++ ++EV++ + L +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 982 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFE--GIRGVSKIKDGYN 1098
+CTIHQPS ++ E FD++ L+ G+ Y+GS + +F G + YN
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDLGHP----CPENYN 270
Query: 1099 PATWMLEVTA--PSQETALGIDFADI---YKSSELYRRNKALIKDISKPAPG---SKDLH 1150
PA + ++V A P E I + S++ R S A G +
Sbjct: 271 PADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330
Query: 1151 FATQYAQSFFTQCMACLWKQHW-SYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQ 1209
Y S++TQ L K+ W S R+P VR + T + A+ G ++ G K
Sbjct: 331 EGIGYNASWWTQ-FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGV 389
Query: 1210 QDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIP 1269
Q N G+++ + + QN V V + E VF RE +G+Y Y A+ + E+P
Sbjct: 390 Q---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELP 446
Query: 1270 YIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYF---TYYGMMAVAMTPNHHIS 1326
+ + I Y MIG A FL F+F L T +G + + ++
Sbjct: 447 LFIILPALFTSITYWMIGLRSGATHFL---TFLFLVTLVANVATSFGYLISCAFSSTSMA 503
Query: 1327 GIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLY---GLVASQFGDIQ---- 1379
V F + +F GF I IP++++W + +SW Y GL+ +Q+ D+
Sbjct: 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIEC 560
Query: 1380 ----DRLESGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKV 1427
+ E L + F++ L + + F L+ +++
Sbjct: 561 TSANTTGPCPSSGEVILET-LSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 8e-74
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 894
+++F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 895 AGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEV 954
AGR+TG +SG ++I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 955 DSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
TSGLD+ +A VM +R DTGRT++C+IHQPS +I E FD+L LL + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 1e-69
Identities = 158/666 (23%), Positives = 286/666 (42%), Gaps = 91/666 (13%)
Query: 139 RALPTFFNFCANIIEGFLNSVNILP--SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKT 196
R F + L S + +LK+VSG+ +PG + ++G +GKT
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKT 65
Query: 197 TLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR 256
TL+ ALA + ++ SG V NG +D + +AY+ Q D I +TVRE L F A
Sbjct: 66 TLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
Query: 257 CQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316
+ M ++++EK + D +L+ LGL CA
Sbjct: 126 LR-------MPRRVTKKEKRERV------------------------DEVLQALGLRKCA 154
Query: 317 DTMVGDE-MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIH 375
+T +G ++G+SGG++KR+ ++ LF DE ++GLDS + +V L+
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK---G 211
Query: 376 I-LKGTTLI-SLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGV 433
+ KG T+I ++ QP+ E ++LFD IIL+++G++ Y G + + FF +G CP+
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 434 ADFLQEVTSRKDQEQYWVHKEEPYR----FVTVKEFADAFQVFYMGQKVGDELRIPFDKR 489
ADF +V + P +++ D+F V +G+ + L
Sbjct: 272 ADFYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDM---LVNTN--L 315
Query: 490 KSHRAA-LTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFK--------LCQLTIMGLV 540
S +A L + + ++ L+KR S++ + + L Q + ++
Sbjct: 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAIL 374
Query: 541 AMTLFFRTKMHRDSI--TDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRF 598
++ + + + +G ++ F+ M N I + A+LP+F ++
Sbjct: 375 IGLIYLGQGLTQKGVQNINGALF----LFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430
Query: 599 YPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALF 658
Y AY L+ I ++P+ I A++ +TY++IG L+ + +A++
Sbjct: 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490
Query: 659 RLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVN 718
LI+ + +A T G ++ + GGF ++ + I ++ W + S Y +++N
Sbjct: 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLIN 550
Query: 719 EFLGNSWRKVLP------NTTEPL---GVQVLKSRGFFTDAYWYWLGLGALAGFILLFNF 769
+ W V NTT P G +L++ F +L L L I F
Sbjct: 551 Q-----WSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRL 603
Query: 770 GFTLAL 775
AL
Sbjct: 604 LAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-53
Identities = 83/210 (39%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGSIMISGYPKKQETFAR 921
+LN VS G + A++G SG+GKTTL+D ++GR GG SG I+ +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
Y Q+DI P +TV E+L Y+A LRLP + RK E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDLALTR---IG 137
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1042 CTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
TIHQP D+ FD + LL G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 2e-53
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 7/216 (3%)
Query: 1161 TQCMACLWKQHWSYWRNPPYS-AVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSM 1219
TQ A L ++ WR+P R + ++AL FGT+F ++ T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1220 YTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYG 1279
+ ++LF + + PV ER V RE A+ +YS Y A+ L+E+P +Q++ +
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1280 VIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNV 1339
+IVY M+G + +F + + T L + G+ A+ P+ + + +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1340 FSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQF 1375
SGF IP +P W +W Y+ P+++ + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-47
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 507 ELLKACMSRELLLMKRNSFV-YIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGAL 565
LKA + RE L R+ + +++L Q +M LV T+F D+ G+ G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 566 FFIVLMIMFNGMAEI-PMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWV 624
FF +L F+ + I P+ I + + ++ Y AY L+ ++++PIS ++ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 625 FLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFV 684
+ Y+++G + R F L+LL AS L IAA + A+ G LL L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 685 LGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEF 720
L GF + + + W W Y+ +PL YA A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-44
Identities = 123/455 (27%), Positives = 219/455 (48%), Gaps = 39/455 (8%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+LNGV+G PG + A++G SG+GK+TL++ LAGR G +G+I+ + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G+ Q+DI P++TV E+L++ + LRLP + + + E V+ + L ++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1043 TIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATW 1102
++HQPS + + FD + +L G+ ++ G S + YFE + NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFP--MNPADF 314
Query: 1103 MLEVT---------------------APSQETALGIDFADIYKSSELYRRNKALIKDISK 1141
+L++ S T L + S + N + S
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1142 PAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWD 1201
S D ++F Q + L ++ ++ ++ +R AL G M+W
Sbjct: 375 KEHRSSD----RISISTWFNQ-FSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH 429
Query: 1202 MGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAF 1261
+D+ + +G ++ +F GV + + V ER +F +ERA+GMY+ Y
Sbjct: 430 -----SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484
Query: 1262 AQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFL 1296
A+ + ++P + + + Y M G + FL
Sbjct: 485 ARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFL 519
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-44
Identities = 76/288 (26%), Positives = 119/288 (41%), Gaps = 24/288 (8%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP--KKQ 916
L+GVS PG + L+G +GAGKTTL+ +LAG SG I++ GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
R GY Q P +TV E+L + A L + ++ R IEE++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDG 1096
G + + E D + +L G I G+ L + F G + +
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP----EELKEKFGGKGVIELEPER 240
Query: 1097 YNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAP 1144
E+ + L ++ + E I+ I P
Sbjct: 241 L-------ELAELLEGLKLVKGEEELAEILEALLEEGVKIESIEVKEP 281
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 1e-42
Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 36/245 (14%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF 226
K+ IL DVS + G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 227 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
Q+ AY+ Q D + +TVRETL ++A R+ + I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------RLPRKSSDAIRKKRVED 125
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
V ++ A T +G +++GISGG+++RV+ ++
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE ++GLDS T +V++L Q + ++++ QP + + LFD I+L+S G+
Sbjct: 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGE 221
Query: 407 IVYQG 411
IVY G
Sbjct: 222 IVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-40
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGT 380
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ +R +LK T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 381 TLISLLQPAPETYDLFDDIILISDGQIVYQG 411
T +SL Q + E YDLFD ++++ +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 3e-38
Identities = 136/536 (25%), Positives = 249/536 (46%), Gaps = 68/536 (12%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
RT +++Q D +TVRETL F + + + L+++EK
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCSLLR-------LPKSLTKQEK-------------- 178
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG-EMMVGPAQA 348
+V + ++ LGL C +T++G+ +RGISGG++KRV+ EM++ P+
Sbjct: 179 ----------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI-SLLQPAPETYDLFDDIILISDGQI 407
L +DE ++GLD++ +++V +L KG T++ S+ QP+ Y +FD ++++S+G+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ--KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 408 VYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEP---------YR 458
++ G + +F+ +GF ADFL ++ + Q +E+P Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 459 FVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELL 518
+ + A ++ + Q + + K HR++ I + + R L
Sbjct: 346 TLLAPKVKAAIEMSHFPQA--NARFVGSASTKEHRSSDRISISTWFNQ--FSILLQRSLK 401
Query: 519 LMKRNSF--VYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVL----MI 572
K SF + +F++ I + L + RD + D + G LFFI +
Sbjct: 402 ERKHESFNTLRVFQV----IAAALLAGLMWWHSDFRD-VQDRL---GLLFFISIFWGVFP 453
Query: 573 MFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIG 632
FN + P A IF K+R Y +Y ++ + +P+ I +++ +TY++ G
Sbjct: 454 SFNSVFVFPQERA---IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 633 FDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGF 688
P +G L+LL ++ L + A + A+T + +L + GGF
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-37
Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 51/297 (17%)
Query: 160 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYN 219
N+ T L VS + PG + LLGP +GKTTLL LAG L + SG +
Sbjct: 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVL 65
Query: 220 GHDMDEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAA 277
G+D+ + + R Y+ Q + E+TVRE L F AR G+ E+
Sbjct: 66 GYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE-------AEERI- 117
Query: 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT 337
+ +L++ GL+ A+ V R +SGG K+R++
Sbjct: 118 --------------------------EELLELFGLEDKANKKV-----RTLSGGMKQRLS 146
Query: 338 TGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLIS--LLQPAPETYDL 395
++ + L +DE ++GLD + +I LR+ T L+S +L+ E +L
Sbjct: 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEEL 203
Query: 396 FDDIILISDGQIVYQGPREHVLEFFKFMGFEC--PKRKGVADFLQEVTSRKDQEQYW 450
D +I+++DG+I+ +G E + E F G P+R +A+ L+ + K +E+
Sbjct: 204 CDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 7e-36
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 152 IEGFLNSVNILPSRKKH-LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL 210
+++ + + + ILKD SG+++PG M L+LG P SG +TLL ALA + + ++
Sbjct: 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV 61
Query: 211 RVSGRVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLS 268
V G + YNG EF Y+S+ D H +TVRETL F+ RC+G +E +
Sbjct: 62 SVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG----NEFVR 117
Query: 269 ELSRREK 275
+S E+
Sbjct: 118 GISGGER 124
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 38/224 (16%)
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMIS 910
G K+ +L SG +PG + ++G G+G +TL+ LA R T G + G I +
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYN 70
Query: 911 GYPKKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
G P K+ E + Y + D+H P +TV E+L ++ +
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------- 111
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++
Sbjct: 112 ------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159
Query: 1029 TVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
+R D T +++Q S +I + FD++ +L G++IY G
Sbjct: 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 23/215 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFA- 920
++ +S G + L+G +GAGKTT + +L G R T SG+ I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 921 -RISGYCEQNDIHSPNVTVYESLLYSAWLR-LPLEVDSPTRKMFIEEVMELVELNPLRQA 978
+ GYC Q D +TV E L + A L+ LP K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS----EIKEEVELLLRVLGLTDKANK 129
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR
Sbjct: 130 RAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGR 183
Query: 1039 TVVCTIHQPSIDIVEAF-DELFLLKRGGQEIYVGS 1072
+++ T H S+D EA D + ++ G+ +GS
Sbjct: 184 SIILTTH--SMDEAEALCDRIAIMSD-GKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKN 784
W K + E LG VLKSRG FT+AYWYW+G+GAL GF +LFN FTLAL++LNP GK+
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 785 QAVIS 789
QA++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 74/208 (35%), Positives = 106/208 (50%), Gaps = 15/208 (7%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP--KKQ 916
K L+GVS PG+ L+G +GAGKTTLM +LA SG+I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
+ R GY Q PN TV E L Y AWL+ + S K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
R V+ + H D+ +++ +L +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 7e-29
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE 225
K +LK+VSG +PG +T ++GP +GK+TLL ALAG+ + L VSG V NG +D+
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 226 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 260
++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET---F 919
L+ +S + G ++G +G+GK+TL+ +L G G SG +++ G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 920 ARISGYCEQNDIHSP-----NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
R G QN P TV E + + L L + + +EE +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFG--LEN-LGLPEEEIEERVEEALELVGLEG 126
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G+T++ H ++E D + +L+ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L VS +PG A++G +GAGK+TL+ + G + T SGSI + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 922 ISGYCEQNDIHSPN--VTVYESLLYSAWLRLPLEVDSPTRKMF--IEEVMELVELNPLRQ 977
I GY Q + ++V + +L + L ++ ++E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGL-FRRLSKADKAKVDEALERVGLSELAD 127
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRG 1064
T++ H + ++E FD + LL R
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-----YPKKQ 916
+L+ +S + G +T ++G +G+GK+TL+ LAG SG +++ G K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLL-----YSAWLRLPLEVDSPTRKMFIEEVMELVE 971
A+ Y Q+ +TVYE +L + P + D + +EE +EL+
Sbjct: 74 --LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKED----EEIVEEALELLG 127
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
L L V LS +R+R+ IA L I+ +DEPTS LD V+ +R
Sbjct: 128 LEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 1032 N-TVDTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+ + G TVV +H D+ A D L LLK G
Sbjct: 183 DLNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 98.6 bits (247), Expect = 1e-23
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP--KKQETF 919
L+ +S G + L+G +GAGKTTL+ ++ G + SG I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R GY + N+TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRG 1064
++ + H + D + +L G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L +S + G +TAL+G +GAGK+TL+ + G SG I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 923 SGYCEQNDIHSPN--VTVYESLLYSAWLRLPLEVDSPTRKMF--IEEVMELVELNPLRQA 978
GY Q + +TV + +L + + +K ++E +E V + LR
Sbjct: 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDKEKVDEALERVGMEDLRDR 135
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
+G LS Q++R+ +A L NP ++ +DEP +G+D + ++ G+
Sbjct: 136 QIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190
Query: 1039 TVVCTIHQPSIDIVEA-FDELFLLKRG 1064
TV+ H + +V A FD + L R
Sbjct: 191 TVLMVTHD--LGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQ 916
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 917 ETFAR---ISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
R I G+ Q+ + P++T E++ LPL + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLE 126
Query: 972 LNPLRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1027 MRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
M +R + G T+V H P ++ E D + L+ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFA 920
+L+ +S G + AL G +GAGKTTL +LAG +++ SGSI+++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 921 RISGYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
+ GY Q+ D +V E LL + E V++ ++L L++
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGL-------KELDAGNEQAETVLKDLDLYALKERH 123
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 124 ---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
V+ H D FL K + + + +
Sbjct: 179 VIVITH----------DYEFLAKVCDRVLLLAN 201
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 8e-22
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 60/246 (24%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
L D+S I+ G L++GP SGK+TLL L G L + SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 230 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R + Q+ D+ TV E +AF G+ E+ R + A
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIE----ERVEEA--------- 118
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
L+++GL+ D L SGGQK+RV ++
Sbjct: 119 --------------------LELVGLEGLRDRSP--FTL---SGGQKQRVAIAGVLAMDP 153
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDII 400
L +DE + GLD + +++ L++ +G T+I LL +L D +I
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLDLL------LELADRVI 205
Query: 401 LISDGQ 406
++ DG+
Sbjct: 206 VLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916
+ L VS G L+G +G+GK+TL+ +L G SG +++ G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 917 ET----FARISGYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
E + G QN D TV + + + L L + + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALELVG 127
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1032 NTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
+ G+T++ H +++V + + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTH--DLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 4e-21
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 57/215 (26%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYISGSIMISG-----Y 912
+L+ +S + G + ++G +GAGK+TL+ LAG K SG I++ G
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASL 66
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
K+ AR Y Q +EL+ L
Sbjct: 67 SPKE--LARKIAYVPQ-------------------------------------ALELLGL 87
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
L + LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 88 AHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142
Query: 1033 TVD-TGRTVVCTIHQPSIDIVEAF-DELFLLKRGG 1065
G+TVV +H +++ + D + LLK G
Sbjct: 143 LARERGKTVVMVLHD--LNLAARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 5e-21
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 63/257 (24%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD 224
+K + D+S + G + LLG +GKTT L L G+L + SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 225 EFVPQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
E + +L++LGL A+ +SGG K++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 340 EMMVGPAQALFMDEISTGLDSSTT---FQIVNSLRQ--SIHILKGTTLISLLQPAPETYD 394
++G L +DE ++GLD ++ + ++ +R+ SI IL TT S+ E
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSI-IL--TTH-SMD----EAEA 197
Query: 395 LFDDIILISDGQIVYQG 411
L D I ++SDG++ G
Sbjct: 198 LCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 61/212 (28%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-----KKQ 916
LN VS G + AL+G SG+GK+TL+ +AG SGSI+I G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSILIDGEDLTDLEDEL 71
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
R G Q+ P++TV E++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
GLS Q++R+ +A L +P ++ +DEPTS LD V +++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 1037 -GRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
G TVV H D+ EA D + +L+ G
Sbjct: 150 LGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 35/87 (40%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLIS 384
LRG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ + T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 385 LLQPAPETYDLFDDIILISDGQIVYQG 411
+ QP+ E ++LFD ++L+S G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P + +L ++SG ++PG +T L+G +GKTTLL LAG+ + + ++G + NG
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRP 72
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRH 264
+D+ QR+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 73 LDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ 113
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKK 915
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+ R G Q+ P++TV E++ + L+L V + + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEGL 123
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1034
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+ G T + H D EA D + ++ G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 8e-20
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG----YPKKQE 917
L G++ A G + AL+G +GAGK+TL+ L G R SG+++I G Y +K
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ----SGAVLIDGEPLDYSRKGL 63
Query: 918 TFARIS-GYCEQN---DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN 973
R G Q+ + + V + + + L L L R+ + E + V +
Sbjct: 64 LERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGAS 118
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 119 GLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 1034 VDTGRTVVCTIH 1045
G TVV + H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-----YPKKQET 918
L+G++ + G L+G SGAGK+TL+ ++ + SG+I ++G +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 919 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
+ R G Q+ P+ VYE++ LEV + + V +EL L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1038 RTVVCTIHQPSI 1049
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-19
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK--- 914
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
E + + + QN + T+ E++L L + + I ++ L
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENIL--------LARPDASDEE-IIAALDQAGLLE 438
Query: 975 LRQALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+++
Sbjct: 439 FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
++ +TV+ H+ D +A D + +L G
Sbjct: 499 LQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 40/203 (19%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIM-----ISGYP 913
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T SGS++ I+G P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT----SGSVLFDGEDITGLP 68
Query: 914 KKQ-------ETFARISGYCEQNDIHSPNVTVYESLL--------YSAWLRLPLEVDSPT 958
+ TF + P +TV E+++ L +
Sbjct: 69 PHEIARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREA 120
Query: 959 RKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
R+ EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL
Sbjct: 121 RER-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1019 DARAAAIVMRTVRNTVDTGRTVV 1041
+ + +R + G TV+
Sbjct: 175 NPEETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY------PKKQE 917
L VS + PG AL+G SGAGK+TL+ L G SGS++I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R G Q ++V E++L R +F +E E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTW--RSLFGLFPKE-----EKQRALA 127
Query: 978 AL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
AL VGL LS Q++R+ IA L+ P +I DEP + LD ++ VM +
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 1031 RN-TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + G TV+ ++HQ + E D + LK G
Sbjct: 188 KRINREEGITVIVSLHQVDL-AREYADRIVGLKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 5e-19
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-- 913
+K+ L V+ G A++G SG+GK+TL+++L G + T SG ++I+G
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT----SGEVLINGKDLT 70
Query: 914 ----KKQETFARIS-GYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV 966
K+ R G+ QN + P++TV E++ LPL + +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKRAA 122
Query: 967 MELVELNPLRQALVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
EL+E+ +GL S LS Q++R+ IA L+ NP II DEPT LD+
Sbjct: 123 EELLEV-------LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1021 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
+ A V+ +R + G+T++ H P ++ + D + LK G
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 7e-19
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1045 HQPSIDIVEAFDELFLLKRG 1064
H P A D + +LK G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGSIMISGYPKKQE---T 918
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLR-LPLEVDSPTRKMFIEEVMELVELNPLRQ 977
AR+ +Q + +++V ++L Y A L L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLS-RAEARAR---IAELLARLGLAERAD 127
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1036
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D
Sbjct: 128 DKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQ 182
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G +V+ H +D +EA D L +L RG
Sbjct: 183 GLSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 70/251 (27%), Positives = 110/251 (43%), Gaps = 42/251 (16%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 230 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ +E + + L++LGL+ AD V + +SGG+++RV +
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQET 157
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
L +DE ++ LD + +++ LR ++ KG T++ +L D +IL+ DG+
Sbjct: 158 PILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216
Query: 407 IVYQGPREHVL 417
IV QG E VL
Sbjct: 217 IVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFA- 920
++GVS +PG +T L+G +GAGKTT + +LAG +G + G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 921 -RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G+ + +T E+L Y A L L+ D T + +EE+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTAR--LEELADRLGMEELLDRR 133
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1040 VVCTIHQPSIDIVEAF-DELFLLKRG 1064
++ + H + VE D + +L RG
Sbjct: 189 ILFSTH--IMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 26/196 (13%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP--K 914
++GV+ R G + +G +GAGKTT + +L R T SG+ ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDVVR 59
Query: 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-----EVDSPTRKMFIEEVMEL 969
+ R G Q +V E L + L + + + EE++EL
Sbjct: 60 EPRKVRRSIGIVPQY------ASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLEL 111
Query: 970 VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 112 FELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 1030 VRNTVDTGRTVVCTIH 1045
+R + G T++ T H
Sbjct: 167 IRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 53/253 (20%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+ + LK VS I G ++GP SGK+TLL + G LD SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRP--TSGEVRVDGTD 67
Query: 223 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
+ + + AA ++ Q N + ++T E + GV + RRE+
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKE-------RRER 120
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
A +L+ +GL + E+ SGGQ++R
Sbjct: 121 AE---------------------------ELLERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 336 VTTGEMMVGPAQALFMDEISTG-LDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD 394
V + + + DE TG LDS T +++ LR+ ++ GTT++ ++ PE +
Sbjct: 149 VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELAE 205
Query: 395 LFDDIILISDGQI 407
D II + DG+I
Sbjct: 206 YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 7e-18
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 820 NHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTAL 879
K + LP I F+ +++ D +L +S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAI 504
Query: 880 MGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQ---ETFARISGYCEQNDIHSP 934
+G SG+GK+TL+ +L G Y G I++ G + R GY Q+
Sbjct: 505 VGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP---- 556
Query: 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP---------GV 985
L+S +R + + +P EE++E +L + + LP G
Sbjct: 557 -------FLFSGSIRENIALGNPEATD--EEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
+ LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAH 666
Query: 1046 QPSIDIVEAFDELFLLKRG 1064
+ S + + D + +L +G
Sbjct: 667 RLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+L+D+S + G +T L+GP +GK+TLL A+ G L SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74
Query: 230 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Y+ Q + +TV++ + G + L++++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEKV--------- 120
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
D L+ +G++ D +G+ +SGGQK+RV +
Sbjct: 121 ----------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 348 ALFMDEISTGLDSSTT---FQIVNSLRQSIHILKGTTLISL---LQPAPETYDLFDDIIL 401
L +DE TG+D + + ++ LRQ +G T++ + L FD +I
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVLMVTHDLGLVM---AYFDRVIC 211
Query: 402 ISDGQIVYQGPREHVLE 418
+ + ++ GP E VL
Sbjct: 212 L-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-KKQETFAR--IS 923
VS G +T L+G +GAGKTTL+ ++A SG + I G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
+ +++ +T E+L Y A L + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1043
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1044 IHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073
H + VEA + ++ G+ + GS+
Sbjct: 190 SH--IMQEVEALCDRVIVLHKGEVVLEGSI 217
|
Length = 245 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP--KKQETF 919
+ GVS R G + L+G +GAGKTT + +L + T SG ++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRATVAGHDVVREPREV 71
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1038
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1039 TVVCTIH 1045
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L+ +S + G + +G +GAGKTT M ++ G + G I+ Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
I E + PN+T E+L A L RK I+EV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLKDSAKKKVK 125
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1042 CTIHQ 1046
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 47/246 (19%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 893
I F +++S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 894 LAGRKTGGYI--SGSIMISGYPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWL 948
LAG Y SGS+++ G +Q A + GY Q D+ T+ +++ A
Sbjct: 50 LAGL----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA-- 102
Query: 949 RLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP---------GVSGLSTEQRKRLTIA 999
D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 ---PLADD-------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152
Query: 1000 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-DIVEAFDEL 1058
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ D+V D +
Sbjct: 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLV---DRI 208
Query: 1059 FLLKRG 1064
++ G
Sbjct: 209 IVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 52/272 (19%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
L DV+ + G + LLGP SGK+TLL +AG L+ SGR+ NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQP--DSGRIRLNGQDATRVHAR 70
Query: 230 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGL-------------EIRKHPKAK----------- 106
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+KA E +L+++ L +GD +SGGQ++RV + Q
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
L +DE LD+ ++ + LR+ + TT+ + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 409 YQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
G + V ++ P V FL EV
Sbjct: 211 QIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 5e-17
Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 50/259 (19%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-- 228
LKDVS I G LL+GP SGK+TLL L G L SG V +G D
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLL 75
Query: 229 --QRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
++ + Q+ D+ + TV + +AF G+ R E
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-PREE-------------------- 114
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT-TGEMMVG 344
++ E L+++GL+ D + SGGQK+RV G + +G
Sbjct: 115 ---IEERVAE----------ALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMG 156
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
P + L +DE + GLD +++ L++ + G T+I + + D ++++ D
Sbjct: 157 P-EILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 405 GQIVYQGPREHVLEFFKFM 423
G+I+ G + + +
Sbjct: 215 GKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 59/250 (23%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-- 229
L +VS IR G ++G SGK+TLL LAG + SG V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 230 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
R Y+ Q D + T+R+ + A P D +
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 289 MKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
++AA E + VTD++ K GLD +G E RG+SGGQ++ V ++
Sbjct: 111 LRAA-----ELAGVTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDIIL 401
L +DE ++ +D ++ ++ LRQ L TLI SLL DL D II+
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQL---LGDKTLIIITHRPSLL-------DLVDRIIV 210
Query: 402 ISDGQIVYQG 411
+ G+IV G
Sbjct: 211 MDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 62/219 (28%), Positives = 94/219 (42%), Gaps = 32/219 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP------KKQE 917
L ++ PG A++G SGAGK+TL+ + SGSI++ G KK
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLR 75
Query: 918 TFARISGYCEQNDIHSPNVTVYESLL-----YSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
R G Q+ +TV E++L Y R L S K E + +E
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK---ERALSALER 132
Query: 973 NPLRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
VGL LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 133 -------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM 185
Query: 1028 RTVRN-TVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
++ + G TV+ +HQ +D+ + + D + LK G
Sbjct: 186 DYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 79.3 bits (197), Expect = 6e-17
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 58/207 (28%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ---E 917
+L VS +PG A++G SG+GK+TL+ +L T SG I+I G + E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEILIDGVDLRDLDLE 72
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
+ + Y Q + L+S +R E +
Sbjct: 73 SLRKNIAYVPQ-----------DPFLFSGTIR--------------ENI----------- 96
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G
Sbjct: 97 ----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKG 145
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+TV+ H+ S + D + +L G
Sbjct: 146 KTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQE 917
+L GV R G + A++G SG+GK+TL+ ++ G R G I G + +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R G Q+ ++TV+E++ + LR ++ EE+ E+V +
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF--PLR-------EHTRLSEEEIREIVLE---KL 121
Query: 978 ALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R+
Sbjct: 122 EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 1033 TVDT-GRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
G T + H D+ AF D + +L G
Sbjct: 182 LKKELGLTSIMVTH----DLDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 7e-17
Identities = 72/257 (28%), Positives = 115/257 (44%), Gaps = 59/257 (22%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP--- 228
L +VS IRPG ++G SGK+TLL L G + G V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+R Y+ Q D + T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 289 MKAAATEGQEASVVTDYI-LKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
++AA G VT+++ GL D +G E R +SGGQ++ V ++
Sbjct: 572 LRAAELAG-----VTEFVRRHPDGL----DMQIG-ERGRSLSGGQRQAVALARALLRDPP 621
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDIIL 401
L +DE ++ +D+ + + + L++ L G TL+ SLL DL D II+
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKR---WLAGKTLVLVTHRTSLL-------DLVDRIIV 671
Query: 402 ISDGQIVYQGPREHVLE 418
+ +G+IV GP++ VLE
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-17
Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 57/259 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G D+++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 230 --RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRH---EMLSELSRREKAAGIK 280
R I Q N I ++V E + +G R + + EK +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR----LGRRSTWRSLFGLFPKEEKQRAL- 126
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
L+ +GL A D++ SGGQ++RV
Sbjct: 127 ------------------------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIAR 157
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLISLLQPAPETYDL---- 395
++ + + DE LD +++ Q+++ L++ I+ +G T ++SL Q DL
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREY 211
Query: 396 FDDIILISDGQIVYQGPRE 414
D I+ + DG+IV+ GP
Sbjct: 212 ADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 8e-17
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 32/199 (16%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--------SGSIMISGYPKKQETFARI 922
+T + G SGAGK+TL+ +AG + GG I I+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G Q P++ V E+L + + E ++ ++E+++L+ L+ L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR---- 127
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK------- 179
Query: 1043 TIHQPSIDIVEAFDELFLL 1061
++ P I + E L
Sbjct: 180 NLNIPVIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 22/201 (10%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK--- 914
+ L VS PG AL+G SGAGK+TL+++L G GSI ++G P
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADA 389
Query: 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+++ + Q+ T+ E++ RL S I E +E L+
Sbjct: 390 DADSWRDQIAWVPQHP-FLFAGTIAENI------RLARPDASDAE---IREALERAGLDE 439
Query: 975 LRQAL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
AL GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1029 TVRNTVDTGRTVVCTIHQPSI 1049
+R + GRTV+ H+ ++
Sbjct: 500 ALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 15/190 (7%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET 918
DKLV+ +G+S + G L+G +GAGKTT + +L G +GSI + G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 919 -FARIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
AR G Q D P+ TV E+LL + + L + + + ++E +L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLENK 131
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
A VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1036 TGRTVVCTIH 1045
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-16
Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L +S + G AL+G SG GK+TL+ ++AG R T SG +++ G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR 75
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
GY Q D P +TV +++ L LE+ + E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVA------LGLELQGVPKAEARERAEELLEL-------VG 120
Query: 982 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1035
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1036 TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFE 1085
TG+TV+ H DI EA +FL + V L ++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 38/183 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISGSIMISGYPKKQETFA 920
L +S G +TAL+G SG GK+TL+ +L G G +++ G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 921 RIS-----GYCEQNDIHSPNV---TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ G Q PN ++Y+++ Y L EE+ E VE
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKL---------KEELDERVE- 121
Query: 973 NPLRQAL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
+AL L GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 122 ----EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 1024 AIV 1026
A +
Sbjct: 178 AKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 24/212 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGSIMISGYPKKQETF 919
L+ +S + G + L+G +GAGKTT + ++ G I SG ++ G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLR-LPLEVDSPTRKMFIEEVMELVELNPLRQA 978
RI GY + P + V + L+Y A L+ L E ++ R I+E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE-EARRR---IDEWLERLELSEYANK 124
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1039 TVVCTIHQPSIDIVEAF-DELFLLKRGGQEIY 1069
TV+ + HQ +++VE D + LL +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 67/251 (26%), Positives = 97/251 (38%), Gaps = 48/251 (19%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+LK V +R G + ++GP SGK+TLL + G L SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 230 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
R + Q +TV E +AF R H LSE RE
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR------EHTRLSEEEIREIVL------ 118
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
K L+ +GL D + +SGG KKRV +
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRVALARALA 152
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
+ L DE + GLD + I + +R S+ G T I + + + D I ++
Sbjct: 153 LDPELLLYDEPTAGLDPIASGVIDDLIR-SLKKELGLTSIMVTHDLDTAFAIADRIAVLY 211
Query: 404 DGQIVYQGPRE 414
DG+IV +G E
Sbjct: 212 DGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 3e-16
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 23/222 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIM-----ISGYPKKQET 918
L V+ G + A++G SGAGK+TL+ L G SG I+ I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKELR 77
Query: 919 FARIS-GYCEQNDIHSPNVTVYESLL-----YSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
R G Q P ++V E++L Y++ R + S K + +E +
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE--RV 135
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR- 1031
L +A S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 136 GILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 1032 -NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
N D G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 193 INQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 27/200 (13%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG--YP----KK 915
V+L+ ++ G + A++G SG+GK+TL++++ + + SG + ++G P KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGQETPPLNSKK 69
Query: 916 QETFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
F R GY QN N TV E+L L L+ ++K E+ E +E
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENL------DLGLKYKKLSKKEKREKKKEALEK-- 121
Query: 975 LRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
VGL + LS +++R+ +A ++ P +I DEPT LD + V+
Sbjct: 122 -----VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1030 VRNTVDTGRTVVCTIHQPSI 1049
+ D G+T++ H P +
Sbjct: 177 LLELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-16
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-SGSIMISGYPKKQ- 916
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 917 ------ETFARISGYCEQNDIHSPNVTVYESLL--------YSAWLRLPLEVDSPTRKMF 962
TF Q P +TV E++ S L P
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 963 I-EEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1022 AAAIVMRTVRNTVDT-GRTVV 1041
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-16
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETF 919
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----LEVDSPTRKMFIEEVMELVELNPL 975
AR EQ+ + +TV + + R+P DSP ++ + EL+ L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 ADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185
Query: 1036 TGRTVVCTIH 1045
TG TVV +H
Sbjct: 186 TGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 64/282 (22%), Positives = 108/282 (38%), Gaps = 71/282 (25%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L D+S I+ G + LLGP +GK+TLL +AG +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 232 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ ++ D +G MTV + +AF + + E SE R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARA 151
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQ---SIHILKGTTLISLLQPAPETYDLFDD 398
+ + L +DE LD ++ LR+ +H G T + + E +L D
Sbjct: 152 LAVEPKVLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADR 207
Query: 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
+++++ G+I GP + V + P + VA FL EV
Sbjct: 208 VVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 9e-16
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP----KKQETF 919
L+ +S + G L AL+G SGAGK+TL+ ++AG +T +G I ++G
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVR 75
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G+ Q+ P++TV +++ + +R + +EE++ LV+L L
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR- 133
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1038
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 134 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067
T V H + +E D + +L +G E
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 72/279 (25%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+LKDV+ I G +LLGP GK+TLL +AG + + SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 230 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
R A + Q H MTV E +AF + R +E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLK-----LRGVPKAEIDKRVKEV----- 117
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQKKRVTT 338
K+LGL + +L +SGGQ++RV
Sbjct: 118 ------------------------AKLLGL---------EHLLNRKPLQLSGGQRQRVAL 144
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398
+V + +DE + LD+ + + + + +H GTT I + E L D
Sbjct: 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADR 203
Query: 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
I++++DG+I G + +E P VA F+
Sbjct: 204 IVVMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 9e-16
Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 47/252 (18%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGY------- 912
V+L+GV G + A++G SG+GK+TL+ ++ G R G I+I G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VMELVE 971
+ E R+ G Q ++TV+E++ + PL + + I E V+ +E
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSLTVFENVAF------PLREHTKLPESLIRELVLMKLE 130
Query: 972 LNPLRQALVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025
L VGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A +
Sbjct: 131 L-------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 1026 VMRTVRNTVDT-GRTVVCTIHQPSIDIVEAF---DELFLLKRGGQEIYVGSLG--RHSSH 1079
+ +R D G TV+ H D+ D + +L G+ I G+ S
Sbjct: 184 IDELIRELNDALGLTVIMVTH----DLDSLLTIADRVAVLAD-GKVIAEGTPEELLASDD 238
Query: 1080 -LIK-YFEGIRG 1089
++ +F GIR
Sbjct: 239 PWVRQFFNGIRD 250
|
Length = 263 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-15
Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 47/252 (18%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
+L+D+S I PG ++G SGK+TLL L G GR+ +G D+++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 230 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 288 FMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
++AA + + ++I + +G D T VG E +SGGQ++R+ ++
Sbjct: 579 IIEAA-----QLAGAHEFIENLPMGYD----TPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE ++ LD T I+ +L Q IL+G T+I ++ T D II++ G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 407 IVYQGPREHVLE 418
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKK 915
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R G Q+ P++TV E++ + L++ ++ K +EE +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1034
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+ G T V H D EA D + ++ G
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-15
Identities = 63/198 (31%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETFA 920
L+GVS PG A++G SG+GK+TL+ LAG + G + + G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
R C Q D H + TV E+L + P D EE+ +E L L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR----PDATD--------EELWAALERVGLADWLR 455
Query: 981 GLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
LP GL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1030 VRNTVDTGRTVVCTIHQP 1047
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 67/259 (25%), Positives = 97/259 (37%), Gaps = 66/259 (25%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
++DVS G +T LLG +GKTTLL +A L SG+VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 232 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+++ + IG +T RE L + AR L+ LSR+E A I
Sbjct: 70 PSFVRRK---IGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
+ K L L D VG S G K++V
Sbjct: 115 ----------------------AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQP--APETYDLFDDI 399
+V L +DE ++GLD T I LK + E L D +
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203
Query: 400 ILISDGQIVYQGPREHVLE 418
I++ G++V +G E +
Sbjct: 204 IVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 55/260 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 229 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR---HEMLSELSRREKAAGIK 280
+R I Q N + ++V E + +G + S+ +KA +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR----LGYTSTWRSLFGLFSKEDKAQAL- 129
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
L+ +G+ A +SGGQ++RV
Sbjct: 130 ------------------------DALERVGILDKAYQRAST-----LSGGQQQRVAIAR 160
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL----F 396
+V + + DE LD + ++++ L+ I+ G T+I L DL
Sbjct: 161 ALVQQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYA 215
Query: 397 DDIILISDGQIVYQGPREHV 416
D II + G+IV+ GP +
Sbjct: 216 DRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 61/259 (23%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
+L+D+S I G L+GP SGK+TL+ + D SGR+ +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 230 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
R +SQ D + TV E +A+ +P +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYG-------------------------RPGATREE 107
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQKKRVTTGEMMVGP 345
+AA A+ ++I++ L DT++G+ RG+ SGGQ++R+ ++
Sbjct: 108 VEEAA-----RAANAHEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 346 AQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPETYDLFDDI 399
L +DE ++ LD+ + + +L ++K TT + S ++ A D I
Sbjct: 157 PPILILDEATSALDTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRI 206
Query: 400 ILISDGQIVYQGPREHVLE 418
+++ DG+IV +G E +L
Sbjct: 207 VVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-15
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS--GSIMISGYPKKQETF 919
L V+ G L+G SG GK+TL+ ++AG T G I G + P+K+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI- 77
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
QN P++TVYE++ + L+L + K ++EV +L+ L L
Sbjct: 78 ----AMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRK 130
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TG 1037
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 131 P-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLG 184
Query: 1038 RTVVCTIHQPSIDIVEA---FDELFLLKRG 1064
T + H D VEA D + ++ G
Sbjct: 185 TTTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETF 919
LL+GVS RPG + A++G +GAGK+TL+ L+G + SG + ++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEV--DSPTRKMFIEEVMELVELNPLRQ 977
AR QN + TV E + R+P + + + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLAG 130
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 131 RD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
G V+ +H +++ + D + LL +G
Sbjct: 186 QLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETF 919
VL +G+S G L G +G+GKTTL+ ++AG G I
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-------LDGGDIDD 68
Query: 920 ARISGYC----EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
++ C +N + P +TV E+L + A ++ I +E V L
Sbjct: 69 PDVAEACHYLGHRNAMK-PALTVAENLEFWAAFL-------GGEELDIAAALEAVGL--- 117
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 118 -APLAHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175
Query: 1036 TGRTVVCTIHQP 1047
G V+ H P
Sbjct: 176 QGGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 8e-15
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 34/221 (15%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
+ +L ++ + G A++G SG GK+TL+ ++AG + T SG +++ G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRPVTG 69
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
GY Q D P +TV +++ L LE+ ++ E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 977 QALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1032 NTV-DTGRTVVCTIHQPSIDIVEAF---DELFLLKRGGQEI 1068
+T +TV+ H D+ EA D + +L I
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-15
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 854 PGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-- 911
+ L+ VS G + ++G SGAGK+TL+ ++ + SGS+ + G
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQD 69
Query: 912 ---YPKKQ-ETFARISGYCEQNDIHSPNV----TVYESLLYSAWLRLPLEVDSPTRKMFI 963
+ + + G Q+ N+ TV+E++ + PLE+ +
Sbjct: 70 LTALSEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAF------PLELAGVPKAEIK 119
Query: 964 EEVMELVELNPLRQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
+ V EL+EL VGL + LS Q++R+ IA L NP I+ DE TS L
Sbjct: 120 QRVAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172
Query: 1019 D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
D +I+ + G T+V H+ +++V+ D + +L +G
Sbjct: 173 DPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 53/252 (21%)
Query: 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS----SLRVSGRVTYN 219
S +K +L D++ I PG + +L GP SGKTT LL L G L S SL+V G+ Y
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYG 71
Query: 220 GHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
+ + +R YI Q N +G +T R+ + + E+ LS +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE-- 120
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM---LRGISGGQKKRV 336
+A A +L+ +GL GD + +SGGQK+RV
Sbjct: 121 ----------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRV 150
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396
+V + + DE + LDS + +V +++ +G T I ++ D+
Sbjct: 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCT-ILIVTHDNRILDVA 208
Query: 397 DDIILISDGQIV 408
D I+ + DG+++
Sbjct: 209 DRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 70/261 (26%)
Query: 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS-SLRVSGRVTYNGHD 222
+ + LKDV+ I G ++GP SGK+T LL L G LD + SG V NG D
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLINGKD 68
Query: 223 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
+ + + A ++ Q+ N + ++TV E + G + RR++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG--------RRKR 120
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG----ISGG 331
AA + +L++LGL D +L+ +SGG
Sbjct: 121 AA--------------------------EELLEVLGL--------EDRLLKKKPSELSGG 146
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTG-LDSSTTFQIVNSLRQSIHILKGTTLI----SLL 386
Q++RV ++ + + DE TG LDS T +++ LR+ ++ +G T+I
Sbjct: 147 QQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD-- 202
Query: 387 QPAPETYDLFDDIILISDGQI 407
PE D +I + DG+I
Sbjct: 203 ---PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 1e-14
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L+GVS RPG + AL+G +GAGK+TLM +L+G SG I+I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 922 ISGYCEQND-----IH-----SPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIE--EVME 968
S + +H PN++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 969 LVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1028 RTVRNTVDTGRTVV 1041
+R G ++
Sbjct: 186 DLIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 58/250 (23%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L DVS +RPGR LLGP +GK+TL L + G+++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 232 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
A + Q +++VR+ L + A G LSR E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAE------- 115
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+L LGL AD V R ++GG ++RV ++
Sbjct: 116 -----------------LLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPAL 153
Query: 349 LFMDEISTGLDSSTTFQIVNSLR-----QSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
L +DE + GLD ++ I +R Q + +L T L+ ++ D ++++
Sbjct: 154 LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLH 206
Query: 404 DGQIVYQGPR 413
G+++ G
Sbjct: 207 RGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-KKQE 917
DK V+ NG+S G L+G +GAGK+T+ ++ G + +G I + G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 918 TFARIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPLEVDSPTRKMFIEEVM-ELVELNP 974
AR G Q D TV E+LL + + + TR+ IE V+ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFAR 161
Query: 975 L-RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
L +A VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+
Sbjct: 162 LESKADAR---VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218
Query: 1034 VDTGRTVVCTIH 1045
+ G+T++ T H
Sbjct: 219 LARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
+N +S + L+G +GAGK+TL+ ++ G R T SG I+ G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
I E ++ N+T E+L L L + I+EV+ +V+L G
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTL---LGLPDSR----IDEVLNIVDLTN-----TG 118
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQETF 919
L+ VS + + G L+G SG+GK+TL + G + T G G ++ + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 920 ARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP--L 975
+ Q+ + S P +T+ E + + L RK + ++ V L L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE-ARKEAVLLLLVGVGLPEEVL 139
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---------SGSIMISGY 912
++ VS R G L+G SG+GK+TL +LAG + G I +G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 913 PKKQETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
+ Q F Q+ S P +TV + L LR+ R+ + E++ELV
Sbjct: 367 RRIQMVF--------QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELV 416
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
L P + L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 417 GLPP--EFLDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 44/243 (18%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
L D+S + PG LLGP GKTTLL +AG SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVRE------------ 113
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+L+++GL+ + +SGGQ++RV +
Sbjct: 114 -----------------LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSL 151
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
L +DE + LD+ ++ L++ L G T I + E L D I ++++G+IV
Sbjct: 152 LLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRIV 210
Query: 409 YQG 411
G
Sbjct: 211 QVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 4e-14
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
L L DVS +RPG + L+GP +GKTTL ++G L + SG V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 229 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
A I Q E+TV E + +A+ + + +L +RRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE------- 119
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+ A E +L+ +GL AD G+ +S GQ++R+ +
Sbjct: 120 ----ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQ 372
+ L +DE + GL+ T ++ +R+
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 34/215 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGSIMISGYPKKQETFAR 921
L ++ + +PG A++G +GAGKTTL+++L Y G I+I G + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 922 IS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
+ G Q D + T+ E++ P EEV+E +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG----------RPNATD--EEVIEAAKEAGAHDF 121
Query: 979 LVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + GRT + H+ S I A D++ +L G
Sbjct: 182 LEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 60/254 (23%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD-- 222
KK L VS + PG M LLGP +GKTTL+ LA S SG + +G D
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 223 --MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+ +R Y+ Q TVRE L + A +G+ S+
Sbjct: 65 KQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEV--------------- 107
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
KA D +L+++ L + + +SGG ++RV +
Sbjct: 108 ---------KARV----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQ 143
Query: 341 MMVGPAQALFMDEISTGLD--SSTTFQ-IVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397
+VG L +DE + GLD F+ +++ L + ++ T ++ ++ L +
Sbjct: 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE------SLCN 197
Query: 398 DIILISDGQIVYQG 411
+ +++ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-KKQETFA 920
L GVS G + AL+G +GAGKTTL+ + G SGSI G
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR----SGSIRFDGRDITGLPPHE 71
Query: 921 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLR 976
R GY + P +TV E+LL A+ R + + +E V EL L R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERR 126
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1037 GRTVV 1041
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 72/262 (27%), Positives = 113/262 (43%), Gaps = 61/262 (23%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF- 226
+LKDVS I G+ ++GP SGK+T+L L D S SG + +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 227 ----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
VPQ T + +D T+ + + R A
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPDA 102
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
D +V AA +A+ + D KI+ DT+VG+ L+ +SGG+K+RV
Sbjct: 103 T------DEEVI--EAA----KAAQIHD---KIMRFPDGYDTIVGERGLK-LSGGEKQRV 146
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396
++ L +DE ++ LD+ T +I +LR + KG T I + +
Sbjct: 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIVIAHRLSTIVNA- 202
Query: 397 DDIILISDGQIVYQGPREHVLE 418
D II++ DG+IV +G E +L
Sbjct: 203 DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 57/209 (27%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ---E 917
+L VS + PG A++G SG+GK+TL ++ G R T SG + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066
T + H+P + + D + +L+ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 54/167 (32%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG--YPKKQET 918
LN VS G ++G SG+GK+TL +LAG + + SGSI++ G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 919 --FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDS-PTRKMFIEEVMELVELN 973
F R Q+ S P TV L PL + I E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL------SEPLRPHGLSKSQQRIAELLDQVGLP 131
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
P L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 132 P--SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-14
Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 56/250 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
L D++ I+ G++T L+G +GK+TLL L G L + G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 229 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
++ +++SQ+ ++ T+RE + + + S E
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLARP------------DASDEE------------ 426
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ AA + + + +++ K GL DT++G+ G+SGGQ +R+ ++ PA
Sbjct: 427 --IIAAL----DQAGLLEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL-----FDDIIL 401
L +DE + LD+ T I+ +L++ K T++ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQELA---KQKTVLVI------THRLEDAADADRIVV 526
Query: 402 ISDGQIVYQG 411
+ +G++V QG
Sbjct: 527 LDNGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 7e-14
Identities = 57/265 (21%), Positives = 95/265 (35%), Gaps = 71/265 (26%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
IL VS + G + LLG +GKTTLL + G L SG + ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 229 QRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSEL--------SRREKA 276
A Y+ + E+TV E L A + R L + RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 337 TTGEMMVGPAQALFMDEISTGLD---SSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393
++ + L +DE S GL F+ + LR +G T++ + Q A
Sbjct: 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-----EGVTILLVEQNARFAL 196
Query: 394 DLFDDIILISDGQIVYQGPREHVLE 418
++ D ++ G++V +G +L
Sbjct: 197 EIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 24/203 (11%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---K 914
E +L +L GV + G A++G SG+GK+TL+ VLAG SG + + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 915 KQETFARIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
++ A + G+ Q+ PN+T E++ LPLE+ + L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIV 1026
E L + L P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 132 EAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1027 MRTVRNTVDTGRTVVCTIHQPSI 1049
R + G T+V H P +
Sbjct: 190 FALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-----YPKKQET 918
L+ VS R G L G SGAGKTTL+ +L G T G + I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 919 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R G Q+ P+ TVYE++ LPLEV + V + L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENV------ALPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1038 RTVVCTIHQPSI 1049
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 34/205 (16%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGSIMISGYP--- 913
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ +G +++ G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 914 KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME----- 968
R G Q E++L++ +R + + P M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIRDNIALADPG--MSMERVIEAAKLA 115
Query: 969 -----LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
+ EL +VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1024 AIVMRTVRNTVDTGRTVVCTIHQPS 1048
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 41/224 (18%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG----Y 912
D L G++ G + AL+G +GAGK+TL G + T SG ++I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 913 PKKQETFARIS-GYCEQN---DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
KK R + G QN + +P TV E + + PL + EEV +
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFG-----PLNLGLSK-----EEVEK 116
Query: 969 LVELNPLRQAL--VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
V ++AL VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 117 RV-----KEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
A+ +M+ + + G T++ + H +D+V + D+++++ G
Sbjct: 172 GASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 53/248 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRVSGRVTYNGHDMDEF 226
+L+DVS ++PG ++GP +GK+TLL A+ G K S S+RV G+ +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 227 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
VPQR + + ++VR+ + G+ + LS+ +KA
Sbjct: 73 VPQRRSI------DRDFPISVRDVVLM-----GLYGHKGLFRRLSKADKAKV-------- 113
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
D L+ +GL + + D + +SGGQ++RV +V
Sbjct: 114 -----------------DEALERVGL-----SELADRQIGELSGGQQQRVLLARALVQDP 151
Query: 347 QALFMDEISTGLDSSTTFQI---VNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
L +DE G+D T I + LR+ +G T++ + + FD ++L+
Sbjct: 152 DLLLLDEPFAGVDPKTQEDIYELLRELRR-----EGMTILVVTHDLGLVLEYFDRVLLL- 205
Query: 404 DGQIVYQG 411
+ +V G
Sbjct: 206 NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQETF 919
LN +S + PG L L+G +GAGKTTLMDV+ G R G G ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVD-----------SPTRKMFIEEVME 968
AR G + P TV+E+L L L L D + I+E++
Sbjct: 79 ARA-GIGRK--FQKP--TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA 133
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
+ L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 134 TIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 68/251 (27%), Positives = 102/251 (40%), Gaps = 48/251 (19%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-R 230
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
++ QH MTV + +AF R V R E E R K
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKV-------------- 117
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
+LK++ LD AD +SGGQ++RV + + L
Sbjct: 118 -------------HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 351 MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI--- 407
+DE LD+ ++ LR+ +H T + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 408 -----VYQGPR 413
VY P
Sbjct: 219 GTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 14/186 (7%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETFA 920
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 921 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R+ GY Q +TV E++L A L + + R+ +EE++E + LR++
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENIL--AVLEI-RGLSKKEREEKLEELLEEFHITHLRKSK 130
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 131 A-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1040 VVCTIH 1045
V+ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET---F 919
+LN +S + G +TAL+G +G GK+TL+ A T SG++ + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 920 ARISGYCEQNDIHSPNVTVYESLLY------SAWLRLPLEVDSPTRKMFIEEVMELVELN 973
AR Q+ + +TV E + Y S W RL S + + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1034 VDTGRTVVCTIHQPSIDIVEA---FDELFLLKRGG 1065
G+TVV +H D+ +A D L +L G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP----KKQE 917
V+L+ VS G +T+++G +GAGK+TL+ + R SG I I G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTR--KMFIEEVMELVELNPL 975
++S ++N I+S +TV + + + R P T+ + I E +E + L L
Sbjct: 73 LAKKLSILKQENHINS-RLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDL 128
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 1036 T-GRTVVCTIHQPSIDIVEA---FDELFLLKRG 1064
G+T+V +H DI A D + LK G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 50/250 (20%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM-- 223
KK + + VS ++PG +T LLGP +GKTT L LAG L+ +G T +G D+
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+ +R ++S +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL----------------------- 108
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
+G E + + + LG++ D VG G S G +++V +V
Sbjct: 109 -----------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALV 152
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLISLLQPAPETYDLFDDIIL 401
L +DE +TGLD T +LR+ I L+ G ++ E L D +++
Sbjct: 153 HDPPVLLLDEPTTGLDVMAT----RALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV 208
Query: 402 ISDGQIVYQG 411
+ G++VY+G
Sbjct: 209 LHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-13
Identities = 68/219 (31%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGS-IMISGYPKKQE-TFAR 921
L+ V G + AL+G SG+GK+TL+ L+G TG +GS I + G ++E AR
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 922 -------ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+GY Q ++V E++L A P + ++ L L
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+R+
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
Query: 1035 DT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
G TVV T+HQ +D + E + R G Y GS
Sbjct: 200 QNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY--WQGEPIQNVR 70
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
E++ + Y +T E+L + W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1037 GRTVVCTIHQP 1047
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 53/255 (20%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--- 226
LK+++ I PG ++GP +GK+TLL + ++ S SG + G D+ +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 227 ----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ +R I QH N I +TV E + R + +L S +K
Sbjct: 73 KLRKLRRRI-GMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK------- 123
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+A L+ +GL A D++ SGGQ++RV +
Sbjct: 124 ------ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARAL 160
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLISLLQPAPETYDL----FD 397
+ DE LD T+ Q+++ L++ I+ G T +I+L Q DL D
Sbjct: 161 AQQPDLILADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQ-----VDLAKKYAD 214
Query: 398 DIILISDGQIVYQGP 412
I+ + G+IV+ G
Sbjct: 215 RIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 5e-13
Identities = 58/266 (21%), Positives = 99/266 (37%), Gaps = 66/266 (24%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P+ + L DVS I+ G L+G SGK+TL A+ G L SG + ++G D
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 223 MDEFVPQ------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
+ + + + + Q D N MT+ E +A R G S+ E E
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEARKEA- 124
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGG 331
G+ + + E +SGG
Sbjct: 125 VLLLLVGVGLPEE---VLNRYPHE--------------------------------LSGG 149
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SL 385
Q++RV + + L DE ++ LD S QI++ L++ + G TL+ +
Sbjct: 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFITHDLGV 208
Query: 386 LQPAPETYDLFDDIILISDGQIVYQG 411
+ + D + ++ G+IV +G
Sbjct: 209 VA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 30/225 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISGYPKK 915
+L VS G A++G SG+GK+T++ DV SGSI+I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---------SGSILIDGQDIR 66
Query: 916 ---QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
++ R G Q D N T+ ++ Y EV + I + +++
Sbjct: 67 EVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD--KIMRF 123
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
+VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 124 PDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR- 181
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHS 1077
V GRT + H+ S IV A D++ +LK G + G H
Sbjct: 182 DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG----RIVERGTHE 220
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-13
Identities = 72/276 (26%), Positives = 114/276 (41%), Gaps = 65/276 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
T + D+S I+ G LLGP GKTTLL +AG S SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 229 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+R + Q H MTV E +AF + + + E + +
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLKVRKKLKKAE------IKARVE---- 118
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
EA L+++GL+ AD +SGGQ++RV
Sbjct: 119 ----------------EA-------LELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+V + L +DE + LD+ Q+ L++ L G T + + E + D I +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAV 209
Query: 402 ISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
++DG+I G E + +E P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 873 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQ-ETFARISGYC 926
PG +TA+ G SG+GKTTL+ ++AG R G ++G + R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 927 EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986
Q P+++V +L Y R++ E V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 64/260 (24%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
LT + DVS +RPG + L+GP +GKTTL + G S SG V + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 229 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
R A I+ Q +TV E +A A + S + E+ A
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA------- 126
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+ A +L+ +GL AD G+ +S GQ++R+ +
Sbjct: 127 ----RERARE-----------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTL------ISLLQPAPETYDLFDD 398
+ L +DE + GL+ T ++ +R+ + G T+ + L+ L D
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRE-LRDRGGVTILLIEHDMKLV------MGLADR 219
Query: 399 IILISDGQIVYQGPREHVLE 418
I++++ G+++ +G E V
Sbjct: 220 IVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
+ +L G+S G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR--WNGTALAEQR 68
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1037 GRTVVCTIHQP 1047
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 55/218 (25%), Positives = 80/218 (36%), Gaps = 51/218 (23%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISG---- 911
E K +L GV+ + G + A+MG +G+GK+TL + G Y G I+ G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 912 -----------------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEV 954
YP I G VT + L + R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 955 DSPTRKMFIEEVMELVELNPL---RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1011
P ++E EL+ L+ R G G G ++KR I L+ P + +
Sbjct: 115 ILPEFIKELKEKAELLGLDEEFLERYVNEGFSG--G----EKKRNEILQLLLLEPKLAIL 168
Query: 1012 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
DEP SGLD A IV + + GR V+ H +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-13
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 42/221 (19%)
Query: 854 PGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913
PGV L+ +S R G + ALMG +GAGK+TL+ +L+G +GSI+I G
Sbjct: 15 PGVKA-----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQE 67
Query: 914 KK-QETFARI-SG----YCEQNDIH-SPNVTVYESLLYSAWL-RLPLEVDSPTRKMFIEE 965
+ T A + +G Y E +H P +TV E+L +L +LP + R++ E
Sbjct: 68 MRFASTTAALAAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYE 120
Query: 966 VMEL-----VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1021 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061
R + R +R GR ++ H+ +E+F L
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR--------MEEIFAL 206
|
Length = 501 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 8e-13
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 24/239 (10%)
Query: 829 LPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 888
L SI F+ +++S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 889 TLMDVLAGRKTGGYISGSIMISGYPKKQETFA---RISGYCEQNDIHSPNVTVYESLLYS 945
TL+ +L SG I+I G + + + G Q D + T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENIALG 426
Query: 946 AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVAN 1005
E++ + E + L +VG GV LS QR+RL IA L+ N
Sbjct: 427 RPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLRN 483
Query: 1006 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
P I+ +DE TS LD A++ ++ + GRT + H+ S ++ D + +L G
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-13
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 44/215 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP--- 228
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+ A++ QH + T+ E + + +PD
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA-------------------------RPD------ 422
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
A+ E +EA + L DT +G+ G+SGGQ +R+ + A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
L +DE + LD+ T +++ +LR + +G T++
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA---LAQGRTVL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 19/159 (11%)
Query: 878 ALMGVSGAGKTTLMDVLAGRKTGGYISGSIM-----ISGYPKKQETFARISGYCEQNDIH 932
++G +G+GK+ L++ +AG SG I+ I+ P ++ Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDI----SYVPQNYAL 82
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992
P++TVY+++ Y R VD + +V+E+ E+ + L P LS +
Sbjct: 83 FPHMTVYKNIAYGLKKRK---VDKKEIE---RKVLEIAEMLGIDHLLNRKPET--LSGGE 134
Query: 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETFA 920
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 921 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G Q+ P+ TVYE++ LPL V + V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1040 VVCTIH 1045
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQETFA 920
L+ VS + G + +G +GAGK+T M ++ G Y+ SGS+ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 921 --RISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R GY + H+P ++ V E L + A + + K +EE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGI---YGMKGQLLKQRVEEMIELVGLRPE 126
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD + +R V +
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN-QLVEIRNVIKNIG 180
Query: 1036 TGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
+T++ + H + VEA D + ++ +G
Sbjct: 181 KDKTIILSTH--IMQEVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 45/254 (17%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+L VS +RPG + +LGP +GK+TLL AL+G+L SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM------V 343
+A A DY R +SGG+++RV ++ V
Sbjct: 118 QALAATDLSGLAGRDY--------------------RTLSGGEQQRVQLARVLAQLWPPV 157
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
+ LF+DE ++ LD + + RQ +G ++++L D I+L+
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 404 DGQIVYQGPREHVL 417
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFA-RI 922
L+ VS G L AL+G SG+GKTTL+ ++AG + SG+I+ G R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPVQERN 75
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G+ Q+ ++TV++++ + LR+ + P +V EL++ LV L
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LVQL 126
Query: 983 PGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1036
+ + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 127 DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
T V H + +E D + ++ +G E VG+
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIE-QVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 20/189 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG---YPKKQET 918
L G+S G + +G +GAGKTT + +L+G + T SG + ++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 919 FARISGYCEQNDIHSPNVTVYESL-LYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
RI Q ++ V +S L +A LP P R F + + EL EL L +
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP-----PAR--FKKRLDELSELLDL-E 144
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1036
L+ P V LS QR R IA L+ P I+F+DEPT GLD A + ++ +
Sbjct: 145 ELLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 1037 GRTVVCTIH 1045
G TV+ T H
Sbjct: 204 GTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 70/264 (26%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR----VSGRVTY 218
PSR ILK +S I PG+ L+G GK+T++ L R SG +
Sbjct: 11 PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILL 62
Query: 219 NGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
+G D+ + + +SQ + + + T+ E + +
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG--------------------- 100
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG--ISGGQK 333
KPD + +AA + + + D+I+ L DT+VG+ RG +SGGQK
Sbjct: 101 ----KPDATDEEVEEAA-----KKANIHDFIMS---LPDGYDTLVGE---RGSQLSGGQK 145
Query: 334 KRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQ 387
+R+ ++ + L +DE ++ LD+ + + +L + +KG T I S ++
Sbjct: 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR---AMKGRTTIVIAHRLSTIR 202
Query: 388 PAPETYDLFDDIILISDGQIVYQG 411
A D I ++ +GQ+V QG
Sbjct: 203 NA-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-12
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 29/222 (13%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ--- 916
K L G+S + + G A++G SG+GK+TL ++ G SGS+ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
ETF + GY Q D+ TV E++ R D E+++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADP-------EKIIEAAKLAGVH 434
Query: 977 QALVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069
++ G TVV H+PS ++ D++ +L+ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 2e-12
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK-KQETFA 920
V++N +S G L+G +GAGK+T+ +L G + G I + G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 921 RIS-GYCEQNDIHSPNVTVYESLL-YSAWLRLPLEVDSPTRKMFIEEVM-ELVELNPLRQ 977
R++ G Q D P TV E+LL + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFARL-E 126
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
+ + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1038 RTVVCTIH 1045
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-----KKQET 918
L G++ + G +TA++G +GAGK+TL L G SG I+ G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMK 79
Query: 919 FARISGYCEQNDIHSP-NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
G Q+ + + +VY+ + + A + L L D ++ ++ ++ + L+
Sbjct: 80 LRESVGMVFQDPDNQLFSASVYQDVSFGA-VNLKLPEDEVRKR--VDNALKRTGIEHLKD 136
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1036
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 137 K-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL 191
Query: 1037 GRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
G T++ H IDIV + D +F++K G
Sbjct: 192 GLTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIS-GSIMISGYP--KKQ 916
+L+G+ +PG + A++G SG+GKTTL+ L + G I G I I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 917 ETFARI----SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ R G+ QN P+ TV E+++ P+ V ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 973 NPLRQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
A VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1028 RTVRNTVDTGRTVVCTIHQPS 1048
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 2e-12
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 38/202 (18%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQ--- 916
LL+ VS RPG + A++G +GAGK+TL+ L+ G + SG + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 917 ETFARISGYCEQNDIHSPNV----TVYE--SLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
AR Q ++ TV E ++ + E D+ + + V
Sbjct: 72 AELARRRAVLPQ----HSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV 122
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1024
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1025 IVMRTVRN-TVDTGRTVVCTIH 1045
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
T L D++ I G +LLGP GKTT L +AG + + SGR+ G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
++ A ++L ++ + D + +SGGQ++RV G +V +
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
MDE + LD+ Q+ L++ + GTT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 64/298 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL------DSSLRVSGRVTYNGHDMD 224
L D+S I G T L+G SGK+T+ + G L +S + V G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ + ++ DN TV + +AF + V R EM+ I D
Sbjct: 81 D-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVL 128
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT-TGEMMV 343
DV M DYI D +SGGQK+RV G + V
Sbjct: 129 ADVGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
P + + +DE ++ LD + QI+ +R+ + T+IS+ E ++ D ++++
Sbjct: 161 EP-KIIILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLD 217
Query: 404 DGQIVYQG-PRE--HVLEFFKFMGFECP---------KRKGVADFLQEVTSRKDQEQY 449
DG+++ QG P E +E K +G + P K KG++ QE+ + + QY
Sbjct: 218 DGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 29/168 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQETF 919
L +S + + G L+G SG GKTTL+ ++AG R+T G Y G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-ITRLPPQKRDY 78
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLRQA 978
G Q+ PN+TV +++ Y L+ R M EV E V EL
Sbjct: 79 ----GIVFQSYALFPNLTVADNIAYG------LK----NRGMGRAEVAERVAEL----LD 120
Query: 979 LVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-E 917
V L+GVS + G L+G SG GKTTL+ ++AG +T SG I++ G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R QN P++TV+E++ + LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 69/264 (26%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHD---MDE 225
LKD+S I G +T L+GP GK+TLL L L G V +G D +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 226 FVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
V + R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKE----ELDERVEEA------ 123
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR-----GISGGQKKRVTT 338
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLRQSIHILKGTTLI---SLLQPAPET 392
+ + L +DE ++ LD +T +I + L++ T +I ++ Q A
Sbjct: 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAA--- 204
Query: 393 YDLFDDIILISDGQIVYQGPREHV 416
+ D + +G++V GP E +
Sbjct: 205 -RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY------P 913
K+ L VS + G + ++G SGAGK+TL+ + G + SGS+++ G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 914 KKQETFARISGYCEQ--NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
K+ R G Q N + S TV+E++ PLE+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 972 LNPLRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1027 MRTVRNT-VDTGRTVVCTIHQ 1046
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMIS 910
RP V +L G+S PG AL+G SG GK+T++ +L R Y SG I++
Sbjct: 13 RPDVP-----ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLD 63
Query: 911 GYPKKQ---ETFARISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIE 964
G + G Q P + T+ E++ Y EV+ +K I
Sbjct: 64 GVDIRDLNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 965 E-VMELVELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
+ +M L P LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 120 DFIMSL----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 1023 AAIVMRTVRNTVDTGRTVVCTIH 1045
+V + + GRT + H
Sbjct: 175 EKLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-12
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 46/225 (20%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQET 918
+V + VS + + G + AL+G +GAGK+TLM +L G + SG I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE----- 67
Query: 919 FARISGYCEQND--------IHS-----PNVTVYE----SLLYSAWLRLPLEVDSPTRKM 961
RI D +H P +TV E L S + R
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA---RAR 120
Query: 962 FIEEVMEL--VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
I+E+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 -IKELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 1020 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ A + +R G+T++ H+ +++ D + +L+RG
Sbjct: 173 PQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 6e-12
Identities = 60/248 (24%), Positives = 95/248 (38%), Gaps = 86/248 (34%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+L D+S I G + +LGP +GK+TLL LAG L S SG + +G D
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKD------- 62
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
L+ LS +E A
Sbjct: 63 -------------------------------------LASLSPKELA------------- 72
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
++ + V L++LGL AD + +SGG+++RV + L
Sbjct: 73 -------RKIAYVPQ-ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPIL 119
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL------FDDIILIS 403
+DE ++ LD + +++ LR+ T ++ L +DL D +IL+
Sbjct: 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLK 172
Query: 404 DGQIVYQG 411
DG+IV QG
Sbjct: 173 DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGY-P-KKQETFARISGYCEQ 928
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLV-- 102
Query: 929 NDIHSPNVTVYESLLYSAW----------LRLPLEVDSPTRKMFIEEVMELVELNP-LRQ 977
+ L W L+L E+ ++ + E+++L L+
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1036
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 P------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVS 1091
TV+ T H DI D + L+ + GQ ++ G+L + L + F + S
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL----AQLQEQFGPYKEFS 255
|
Length = 325 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 6e-12
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 63/268 (23%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
+ L+ VS + G + LLG +GKTTLL + G + SGR+ ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 228 PQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
P A AY+ + +TV E L L R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENL---------------LLGAYARRDKEAQERDL 116
Query: 284 DI--DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
+ ++F + Q A T+ SGG+++ +
Sbjct: 117 EEVYELFPRLKERRNQRAG-----------------TL---------SGGEQQMLAIARA 150
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL---QPAPETYDLFDD 398
++ + L +DE S GL IV + ++I L+ +++L Q A ++ D
Sbjct: 151 LMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADR 206
Query: 399 IILISDGQIVYQGP------REHVLEFF 420
++ +G+IV G V E +
Sbjct: 207 GYVLENGRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 75/271 (27%), Positives = 113/271 (41%), Gaps = 57/271 (21%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LRVSGRVTYNG 220
++H IL+D+S I PGR+T LLG +GK+TLL ALAG L RV+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 221 HDMDEFVPQRTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSR--REK 275
+ R A A + Q + AFSAR E++ L R +
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAR--------EIVL-LGRYPHAR 113
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
AG D ++ +A A G A ++G DV +SGG+ R
Sbjct: 114 RAGALTHRDGEIAWQALALAGATA---------LVGRDVTT-----------LSGGELAR 153
Query: 336 VTTGEMM---------VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL 386
V ++ P + L +DE + LD + ++++++R+ L +
Sbjct: 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVH 213
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVL 417
P D I +++DG IV G VL
Sbjct: 214 DPNLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-12
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L + G A++G SG+GK+TL+ +LAG GSI ++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV---MELVEL-NPLRQAL 979
EQ + +V L+S LR L + +P EE+ ++ V L L A
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDAS--DEELWAALQQVGLEKLLESAP 461
Query: 980 VGLP-----GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
GL G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ G+T++ H+ +E D + +L G
Sbjct: 522 E-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 46/235 (19%)
Query: 181 PGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRVSGRVTYNGH-DMDEFVPQRTAAYIS 236
+T + G +GK+TLL +AG K D ++ ++G V ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEG 296
Q + VRE LAF + RE + + E
Sbjct: 82 QQYALFPHLNVRENLAFGLK------------RKRNRE--------------DRISVDE- 114
Query: 297 QEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEIST 356
+L +LGLD + +SGG+K+RV + + L +DE +
Sbjct: 115 ---------LLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 357 GLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411
LD + Q++ L+Q L + + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-12
Identities = 76/293 (25%), Positives = 114/293 (38%), Gaps = 80/293 (27%)
Query: 150 NIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS 209
N+ + + + + + + + DVS +R G L+G SGK+TL LAG L S
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 210 LRVSGRVTYNGHDMD----EFVPQR-TAAYISQH-----DNHIGEMTVRETLAFSARCQG 259
SG + ++G D+D E R + Q + MTV + LA R G
Sbjct: 345 ---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHG 398
Query: 260 VGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319
GS E RR + A +L+++GL
Sbjct: 399 GGSGAE------RRARVAE---------------------------LLELVGL----PPE 421
Query: 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQAL-------FMDEISTGLDSSTTFQIVNSLRQ 372
D +SGGQ++RV A+AL +DE + LD S Q++N L+
Sbjct: 422 FLDRYPHELSGGQRQRVAI-------ARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 373 SIHILKGTTL-IS-----LLQPAPETYDLFDDIILISDGQIVYQGPREHVLEF 419
L T L IS + A D + ++ DG+IV +GP E V E
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISGSIMISGYPKKQETFARIS 923
VS G + L+G +GAGKTT ++ G R G I IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
GY Q ++VY++L+ A L++ ++ + R+ E+ME + LR ++
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1043
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1044 IH--QPSIDIVE 1053
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 8e-12
Identities = 67/274 (24%), Positives = 102/274 (37%), Gaps = 86/274 (31%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+L DVS +RPG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 230 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 287 VFMKAA--ATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV------TT 338
V M A E + L + L + +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRVQLARVLAQ 151
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK---------GTTLISLLQPA 389
GP + L +DE ++ LD L H+L+ G +I +L
Sbjct: 152 LWEPDGPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLAVIVVL--- 198
Query: 390 PETYDL------FDDIILISDGQIVYQGPREHVL 417
+DL D I+L+ G++V G VL
Sbjct: 199 ---HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-12
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 888 TTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS----GYCEQNDIHSPNVTVYESLL 943
+TL+ ++ G SG+I++ G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 944 YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELV 1003
+ EE +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFL----DREPVGTLSGGQKQRVAIARALL 106
Query: 1004 ANPSIIFMDEPTS 1016
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
++ +S PG + L+G +GAGKTT ++ G G I +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 924 GYC-EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
GY E+ ++ P +TV + L Y A L+ + + + ++ +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 983 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRG 1064
+ + H+ + E D L +LK+G
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---- 913
E +L +L GV + G AL+G SG+GK+TL+ +LAG G SG + + G P
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQM 77
Query: 914 ---KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
+ + A+ G+ Q+ + P + E++ A LR E +R L+
Sbjct: 78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGAKALL 131
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 132 EQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 47/201 (23%)
Query: 160 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYN 219
NI S KK IL D+S + G + L G +GKTTL LAG + S SG + N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLN 60
Query: 220 GHDMDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
G + +++ Y+ Q D + +VRE L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------------------ 96
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
+K ++A +LK L L + +SGGQK+R+
Sbjct: 97 ----------LKELDAGNEQAE----TVLKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 339 GEMMVGPAQALFMDEISTGLD 359
++ L DE ++GLD
Sbjct: 138 AAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-11
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG---HDMDEFV 227
+L VS + PG +LGP SGK+TLL LAG LD G VT +G +D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+R + +Q D H+ + TVRE L + + E+ + L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL---- 454
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
A +G DT++G E +SGG+++R+ ++ A
Sbjct: 455 ---RALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQ 372
L +DE + LD+ T +++ L
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-11
Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 43/249 (17%)
Query: 829 LPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 888
LP +ITF+ I + D +L+ ++ +PG ++G SG+GK+
Sbjct: 449 LPELRGAITFENIRFRYA-----------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 889 TLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYS 945
TL +L T + G +++ G R G V + E++L+S
Sbjct: 498 TLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG-----------VVLQENVLFS 544
Query: 946 AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP----------GVSGLSTEQRKR 995
+R + + +P E V+ +L + LP G LS QR+R
Sbjct: 545 RSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQR 601
Query: 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF 1055
+ IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H+ + V A
Sbjct: 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHR--LSTVRAC 658
Query: 1056 DELFLLKRG 1064
D + +L++G
Sbjct: 659 DRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
L VS G L ++G SG GKTTL++++AG T GSI ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G QN+ P + V +++ + LR ++ R+ +++ ALVGL
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQML----------ALVGL 122
Query: 983 PG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
G + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 29/218 (13%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQE--- 917
++ V+ G L+G SG+GKTT + + I SG I+I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R GY Q P++TV E++ L L D K +E+++LV L+P +
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP-SE 127
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTV 1034
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 128 YADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE- 184
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRGGQEIY 1069
G+T+V H DI EA D + ++ G Y
Sbjct: 185 -LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQY 217
|
Length = 309 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETFA 920
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 921 RISGYCE--QNDIHSPNVTVYESLLYS--------AWLRLPLEVDSPTRKMFIEEVMELV 970
R +G Q N+TV+E+L + A L L S K IEEV+E +
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRL---SAEEKDRIEEVLETI 131
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 132 GLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM--- 223
T L D+S + G + LLGP +GKTTL+ + G L SG + G D+
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFS 254
E V +R Y+ + + +TVRE L S
Sbjct: 68 PEEVKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 45/242 (18%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM--DEFVPQ 229
++ VS +R G + LLGP +GKTT + L L + SGR T GHD+ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
R + Q + E+T E L AR GV RRE+
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI------------- 112
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
D +L +GL D +++ SGG ++R+ +V + L
Sbjct: 113 --------------DELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409
F+DE + GLD T + + + + G T++ E L D + +I G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 410 QG 411
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFA-RI 922
L+ V+ G L AL+G SG+GK+TL+ ++AG + SG I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G+ Q+ ++TV +++ + +R K +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKH---PKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
P + LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE 917
D +L +S G AL+G SG+GK+TL++++ + SG I+I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 918 TFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
T A R G Q D+ N TV E++ Y TR EEV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR--------PGATR----EEVEEAARAAN 116
Query: 975 LRQALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1026 VMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
V + + RT H+ S +E D + +L+ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 76/315 (24%), Positives = 113/315 (35%), Gaps = 63/315 (20%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD 224
+T L DVS I G + ++G +GK+TLL + L+ SG V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDLT 71
Query: 225 EF--VPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
R I QH N + TV E +AF GV + E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAEI--- 118
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
K E +L+++GL AD +SGGQK+RV
Sbjct: 119 -----------KQRVAE----------LLELVGLSDKADRYPAQ-----LSGGQKQRVAI 152
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE-TYDLFD 397
+ + L DE ++ LD TT I+ L+ I+ G T I L+ E + D
Sbjct: 153 ARALANNPKILLCDEATSALDPETTQSILELLKD-INRELGLT-IVLITHEMEVVKRICD 210
Query: 398 DIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKD----QEQYWVHK 453
+ ++ G++V +G V F PK +F+ E E+
Sbjct: 211 RVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLEIDLPEELLERLESGD 262
Query: 454 EEPYRFVTVKEFADA 468
R E AD
Sbjct: 263 GPLLRLTFTGESADQ 277
|
Length = 339 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 65/266 (24%), Positives = 109/266 (40%), Gaps = 64/266 (24%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
ILK V+ ++ G + ++GP SGK+TL +AG S SG + + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 231 TAA---YIS-QHDNHIGEMTVRETL--AFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
A +++ Q+ I ++ E L A +AR R + +
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---------------RSARG-----EEP 113
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR-----GISGGQKKRVTTG 339
+D+ + L +LG+D +E L G SGG+KKR
Sbjct: 114 LDLL--DFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEIL 156
Query: 340 EMMVGPAQALFMDEISTGLDSSTT---FQIVNSLRQS----IHILKGTTLISLLQPAPET 392
+M + + +DEI +GLD + +N LR+ + I L++ ++P
Sbjct: 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---- 212
Query: 393 YDLFDDIILISDGQIVYQGPREHVLE 418
D + ++ DG+IV G E E
Sbjct: 213 ----DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 34/256 (13%)
Query: 156 LNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGR 215
L +V++ R IL D+S + PG ++GP +GKTTLL L G+ S SG
Sbjct: 34 LKNVSV--RRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGD 87
Query: 216 VTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
VT G I + IG V L R + + +++ LS
Sbjct: 88 VTLLGR------RFGKGETIFELRKRIG--LVSSELHE--RFRVRETVRDVV--LSGFFA 135
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
+ GI D+ AAA +L++LG AD G +S G+++R
Sbjct: 136 SIGI-YQEDLTAEDLAAAQW----------LLELLGAKHLADRPFGS-----LSQGEQRR 179
Query: 336 VTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL 395
V +V + L +DE + GLD Q++N L + L+ + A E
Sbjct: 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239
Query: 396 FDDIILISDGQIVYQG 411
F +L+ +G++V QG
Sbjct: 240 FTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 24/216 (11%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETF 919
+L GVS + G + A++G SG+GK+TL+ +L G SG ++ +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 920 ARIS-------GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ G+ Q P+ T E++ +PL + + K E E++E
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVA------MPLLIGKKSVKEAKERAYEMLEK 128
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1029
L + P S LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 129 VGLEHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
+ ++T VV H ++ + D + +K G
Sbjct: 187 LNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLR------QSIHILK 378
LRG+S Q+KR+T G + LF+DE ++GLDS + IV L+ Q+I
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI---- 161
Query: 379 GTTLISLLQPAPETYDLFDDIILI-SDGQIVYQG 411
L ++ QP+ ++ FD ++L+ G+ VY G
Sbjct: 162 ---LCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 3e-11
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
+LKDVS I+PG ++GP SGK+TLL L D + SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 230 --RTAAYISQHDNHIGEMTVRE 249
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL V + G + +LG SGK+TLL + G L G + +G D+ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 230 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+ Q +TV E +AF R H L E RE
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR------EHTKLPESLIRELVL------ 126
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
MK L+++GL D +SGG +KRV +
Sbjct: 127 -----MK----------------LELVGLR----GAAADLYPSELSGGMRKRVALARAIA 161
Query: 344 GPAQALFMDEISTGLD--SSTTF-QIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400
+ LF+DE ++GLD S+ +++ L ++ G T+I + + D +
Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----GLTVIMVTHDLDSLLTIADRVA 217
Query: 401 LISDGQIVYQGPREHVLE 418
+++DG+++ +G E +L
Sbjct: 218 VLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 57/260 (21%), Positives = 111/260 (42%), Gaps = 63/260 (24%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG---HDMDEFV 227
+LKD++ I+PG ++GP +GKTTL+ L D G++ +G D+
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+ + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 288 FMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDEMLRG--ISGGQKKRVTTGEMMVG 344
++AA G D+I+K+ G DT++G+ G +S G+++ + M+
Sbjct: 109 VIEAAKEAG-----AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAMLR 156
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDD 398
+ L +DE ++ +D+ T I +L + ++KG T I S ++ A D
Sbjct: 157 DPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------DK 206
Query: 399 IILISDGQIVYQGPREHVLE 418
I+++ DG+I+ +G + +L
Sbjct: 207 ILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQND--- 930
G + AL+GV+G+GK+TL L G SG I I G P +Q + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 931 ----IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986
+ +V + + WLR + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 49/252 (19%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRV--SGRVTYNGHDMDEFVP 228
IL ++S I+PG + ++G SGK+TL KL V +GRV +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 229 ---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
+R + Q +N + ++R+ +A + P +
Sbjct: 72 AWLRRQVGVVLQ-ENVLFNRSIRDNIALA-------------------------DPGMSM 105
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
+ ++AA G D+I + L DT+VG E G+SGGQ++R+ ++
Sbjct: 106 ERVIEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHN 156
Query: 346 AQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
+ L DE ++ LD + I+ ++ I G T+I ++ T D II++ G
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKG 212
Query: 406 QIVYQGPREHVL 417
+IV QG + +L
Sbjct: 213 RIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-KKQETFARI 922
L GVS G +T ++G +G GKTTL+ L G SGSI + G K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITKLPPHERA 73
Query: 923 S---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
Y Q P +TV E+LL P R I + E+ EL P+ + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLKEM 124
Query: 980 VGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
+G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 125 LGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-11
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 28/156 (17%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS--GSIMISG-----YPKKQETFARIS 923
G+ TAL G SG+GKT+L++++AG R G I G +++ P ++ RI
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR---RI- 78
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
GY Q+ P+ TV +L Y W + + ++++ L+ + L L P
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYP 126
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
G LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 GT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 20/219 (9%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ET 918
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I++ P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----LEVDSPTRKMFIEEVMELVELNP 974
FAR Y Q + +TV E + A R P L + +EE + LV L P
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREKVEEAISLVGLKP 139
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNT 1033
L LV LS +R+R IA+ + + + +DEPTS LD V+ V R +
Sbjct: 140 LAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194
Query: 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
+ G TV+ +H I++ + + + RGG+ I G+
Sbjct: 195 QERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 62/251 (24%), Positives = 97/251 (38%), Gaps = 43/251 (17%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG---HDMDEF 226
I+ V PG +T LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 227 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R A + Q + +TVR+ +A L + R AG D D
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA--------------LGRIPHRSLWAG---DSPHD 114
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
V D L L + + D + +SGG+++RV +
Sbjct: 115 A-------------AVVDRALARTEL-----SHLADRDMSTLSGGERQRVHVARALAQEP 156
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE + LD + + +R+ G T+++ L D ++++ G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 407 IVYQGPREHVL 417
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 5e-11
Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 49/269 (18%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
T+L D+S I G + L+G GKTTLL A+AG + ++ ++GR+ D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+R A + Q+ + V + +AF R +++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
A V D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
L +DE + LD++ + + L T++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 409 YQGPREHVLEFFKFMGFECPKRKGVADFL 437
G + + ++ P A+FL
Sbjct: 219 AHGEPQAL--------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 59/195 (30%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 879 LMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQETFARISGYCEQNDIHSP 934
L+G SG GKTT + ++AG T G YI G + PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994
++TVY+++ L++ + E V E+ EL + L P LS QR+
Sbjct: 86 HMTVYDNI------AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP--KQLSGGQRQ 137
Query: 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCTIHQPSIDIV 1052
R+ + +V P + MDEP S LDA+ + MR R G T + H D V
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRAELKRLQQRLGTTTIYVTH----DQV 192
Query: 1053 EAF---DELFLLKRG 1064
EA D + ++ G
Sbjct: 193 EAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-11
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF- 226
+L D+S I G+M LLGP SGKTTLL +AG L+ + SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 227 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R ++ QH MTV + +AF L+ L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+KA T+ +L+++ L AD +SGGQK+RV +
Sbjct: 112 A-IKAKVTQ----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
Q L +DE LD+ ++ LRQ LK T++ + E ++ D ++++S G
Sbjct: 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGN 214
Query: 407 IVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
I G + V + P + V +F+ EV
Sbjct: 215 IEQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 6e-11
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 27/173 (15%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-------KK 915
+L+ VS + G + A++G SG+GK+TL+ +L G T SG ++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
E + G+ Q P+ T E++ +PL + +E++
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEML----- 130
Query: 976 RQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
A VGL S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 --AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 71/278 (25%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-SSLRVSGRVTYNGH 221
+ + ++DVS + PG + ++G SGK+TL LAL G L SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 222 DMDE---------------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEM 266
D+ + Q ++ MT+ + + + R G GSR E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLN------PVMTIGDQIREALRLHGKGSRAE- 128
Query: 267 LSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326
R++A +L+ +GL D D
Sbjct: 129 -----ARKRAV---------------------------ELLEQVGLP---DPERRDRYPH 153
Query: 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL 386
+SGG ++RV + + L DE +T LD +T QI++ L+ + G ++ +
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD-LQRELGMAVLFI- 211
Query: 387 QPAPETYDL------FDDIILISDGQIVYQGPREHVLE 418
T+DL D ++++ G+IV GP E +L
Sbjct: 212 -----THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 77/249 (30%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
LKD++ + G + ++GP SGK++LL AL G+L+ ++SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 231 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRRE-KAAGIKPDPDID 286
+ AY+SQ N T+RE + F E + KA ++PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILFG---------KPFDEERYEKVIKACALEPD---- 109
Query: 287 VFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDEMLRGI--SGGQKKRVTTGEMMV 343
L+IL D T +G+ +GI SGGQK+R++ +
Sbjct: 110 --------------------LEILPDGD---LTEIGE---KGINLSGGQKQRISLARAVY 143
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFD 397
A +D+ + +D+ I + +L T I LL A D
Sbjct: 144 SDADIYLLDDPLSAVDAHVGRHIFENCILG-LLLNNKTRILVTHQLQLLPHA-------D 195
Query: 398 DIILISDGQ 406
I+++ +G+
Sbjct: 196 QIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 42/209 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYISGSIMISG---YPK 914
LN VS F P +TAL+G SG+GK+TL M+ L T I+GSI+ +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 915 KQETF---ARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
+ +T I +Q PN +++YE+++Y LRL D K ++E +E
Sbjct: 78 RTDTVDLRKEIGMVFQQ-----PNPFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE 126
Query: 969 LVELNPLRQALVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L+ A + GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ----KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 1022 AAAIVMRTVRNTVD--TGRTVVCTIHQPS 1048
+A + T+ D T V ++ Q S
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-11
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ET 918
+L G+S A + G ++G SG+GK+TL +L G SGS+ + G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIE-----EVMELVELN 973
R GY Q D+ + T+ E++ R E D + IE V EL+
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADP---EKVIEAARLAGVHELILRL 458
Query: 974 PL-RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
P +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 459 PQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G TVV H+PS + + D++ +L+ G
Sbjct: 518 AKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 48/193 (24%), Positives = 72/193 (37%), Gaps = 46/193 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+ +S + G +L GP SGKTTLL +AG L +G + +G D+D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDI---- 108
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
AAA L+ +GL A G +S GQK+RV ++V
Sbjct: 109 -AAA-------------LEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 350 FMDEISTGLDSST 362
+DE + LD++
Sbjct: 150 ILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMI-----SGYPKKQET 918
L ++ PG + L G SG+GKTTL+ ++ G ++ GS+ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 919 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEV-DSPTRKMFIEEVMELVELNPLR 976
R + GY Q H+ + L +++ LE+ + + + E ++E L
Sbjct: 79 QLRRNIGYIFQA--HN----LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG 132
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1035
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 133 DHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 1036 TGRTVVCTIHQPSI 1049
G T++ H I
Sbjct: 191 QGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD---M 223
+LKD+S I PG ++GP SGK+TL+ L D + SG + +G D +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
++ +SQ D + T+RE +A +PD
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIALG-------------------------RPDA 430
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
+ +A + + ++I L DT+VG E +SGGQ++R+ ++
Sbjct: 431 TDEEIEEAL-----KLANAHEFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
L +DE ++ LD+ T I ++L++ +LKG T + + T D II++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK---LLKGRTTLIIAH-RLSTIKNADRIIVLD 537
Query: 404 DGQIVYQGPRE 414
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 52/267 (19%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-R 230
LK+VS + G ++LGP SGK+ LL +AG + SG++ NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
+Y+ Q+ MTV + +A+ G+ R E+ R+
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK----------------- 109
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
I ++LG+D + + +SGG+++RV +V + L
Sbjct: 110 ------------VLEIAEMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 351 MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQ 410
+DE + LD T ++ L++ I G T++ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 411 GPREHVLEFFKFMGFECPKRKGVADFL 437
G E V F+ PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 18/213 (8%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG--YISGSIMISGYPKKQET 918
+L +S PG A++G +GAGKTTL+ +L G + G + G G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-ETIFEL 104
Query: 919 FARISGYC--EQNDIHSPNVTVYESLL--YSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
RI G E ++ TV + +L + A + + E + + ++EL+
Sbjct: 105 RKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--N 1032
L G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 164 LADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
++ H +I F LLK G
Sbjct: 219 ASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-10
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-ETFA 920
+L+ +S G L AL+G SG GKTTL+ +AG ++G I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
R QN P++ V +++ + L + E V + ++L L A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFG------LRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1038
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 133 HLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRG 1064
T++C H + A D+ ++K G
Sbjct: 191 TILCVTHDQDDALTLA-DKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L ++ +TAL+G SG GK+TL+ D++ G + + G +++ G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 914 KKQETFA---RISGYCEQNDIHSPNV---TVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
K + R+ G Q PN ++Y+++ Y LRL D E+
Sbjct: 79 PKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYG--LRLHGIKDK--------ELD 123
Query: 968 ELVELNPLRQALVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
E+VE + L++A L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 124 EIVE-SSLKKA--ALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1018 LD 1019
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 878 ALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS---GYCEQN---DI 931
A++G +GAGK+TL G SGS++I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 932 HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991
SP TV + + + + L +D T + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1050
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1051 IVEAFDELFLLKRG 1064
+ E D ++++ +G
Sbjct: 201 VPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-10
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS------GY 925
RPG L+GV+GAGKTT +L G T SG ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 926 CEQNDIHSPNVTVYESLLYSAWLR-LPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG 984
C Q D +T E L A LR +P E IE+V + L +L
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE--------IEKVANW-SIQSLGLSLYADRL 2067
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 1045 H 1045
H
Sbjct: 2128 H 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
D L +G+S G + G +G+GKTTL+ +LAG +G ++++G P
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDF 66
Query: 917 E--TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+ + AR Y ++V E+L + D +EE + V LN
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENL---RFWH-ADHSDEQ-----VEEALARVGLNG 117
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 118 FEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 1035 DTGRTVVCTIHQP 1047
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 20/211 (9%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETF 919
+L+GV + R G L L+G +GAGKTTL+ + G T +G+++++G
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----LEVDSPTRKMFIEEVMELVELNPL 975
+R Q+ S V + + R P + + T + +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPHRSRFDTWTETDRAAVERAMERTGVA-- 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 --QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 1036 TGRTVVCTIHQPSIDIVEAF-DELFLLKRGG 1065
G+T V IH +D+ + DEL LL G
Sbjct: 188 DGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK-- 915
D ++L+ VS PG A++G SG+GK+TL+ +L G +T SGS+ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 916 -QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+ R G QN +++E++ A PL +D E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----PLTLD---------EAWEAARMAG 566
Query: 975 LRQALVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025
L + + +P G LS QR+RL IA LV P I+ DE TS LD R AI
Sbjct: 567 LAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI 626
Query: 1026 VM 1027
V
Sbjct: 627 VS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 67/279 (24%), Positives = 112/279 (40%), Gaps = 77/279 (27%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRV-SGRVTYNGHDMDEFVPQ 229
ILK V+ ++ G + ++GP SGK+TL + G V G + ++G D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED------- 69
Query: 230 RTAAYISQHDNHIGEMTVRE------TLAFS--ARCQGVGSRHEMLSELSRREKAAGIKP 281
I E++ E LAF GV + + + ++ R A GI
Sbjct: 70 ------------ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-- 115
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR-----GISGGQKKRV 336
P+ +K A ++LGLD +E L G SGG+KKR
Sbjct: 116 LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRN 153
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLRQSIHILKGTTLISLLQPAPETY 393
++++ + +DE +GLD + +N+LR+ +G +I+ Q
Sbjct: 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG---RGVLIITHYQ------ 204
Query: 394 DLFDDII-----LISDGQIVYQGPREHVLEFFKFMGFEC 427
L D I ++ DG+IV G E + E + G++
Sbjct: 205 RLLDYIKPDKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 71/307 (23%)
Query: 125 FEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNI---LPSRKKHLTILKDVSGIIRP 181
F L+ E G+RA+ G + N+ P R + L +S +I P
Sbjct: 308 FTLLDSPPEKDTGTRAIER--------ARGDVEFRNVTFRYPGRDR--PALDSISLVIEP 357
Query: 182 GRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQH 238
G L+G SGK+TL+ + + SG++ +GHD+ ++ R A +SQ
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ- 413
Query: 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQE 298
D + T+ +A+ Q + E
Sbjct: 414 DVVLFNDTIANNIAYGRTEQADRAEIE-----------------------------RALA 444
Query: 299 ASVVTDYILKI-LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTG 357
A+ D++ K+ LGLD T +G+ + +SGGQ++R+ ++ A L +DE ++
Sbjct: 445 AAYAQDFVDKLPLGLD----TPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 358 LDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPETYDLFDDIILISDGQIVYQG 411
LD+ + + +L +++G TTL+ S ++ A D I+++ DG+IV +G
Sbjct: 500 LDNESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERG 549
Query: 412 PREHVLE 418
+L
Sbjct: 550 THNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFA 920
L +SG R G + L+G +GAGK+TL+ +AG +G SGSI +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQAL 979
R Y Q +P W L L TR + +V + L + L ++
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 980 VGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1034
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G +V + H + + A +LLKRG
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 157 NSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSG 214
VNI K+ +K+V+ ++ G + L+GP GKTT L A+ L RV+G
Sbjct: 8 QDVNIYYGDKQ---AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64
Query: 215 RVTYNGHDM-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSE 269
R+ +G D+ D +R + Q N M+V + + + G+ R ++
Sbjct: 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124
Query: 270 LSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329
R + A + ++ +K AT G+S
Sbjct: 125 AERSLRGAALW--DEVKDRLKTPAT--------------------------------GLS 150
Query: 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPA 389
GGQ++R+ + + L MDE ++ LD ++T +I + + + K TT+I +
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNM 207
Query: 390 PETYDLFDDIILISDGQIVYQGPREHVLE 418
+ + D G +V GP + +
Sbjct: 208 HQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 18/223 (8%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY---PKKQET 918
+LNG+S G A++G SGAGK+T++ +L SGSI I G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME-LVELNPLRQ 977
R G Q D N T+ ++ Y EV + I + ++ L E
Sbjct: 335 LRRAIGIVPQ-DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
GL LS +++R+ IA ++ NP I+ +DE TS LD + +R V G
Sbjct: 394 GERGLK----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAG 448
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHL 1080
RT + H+ S I++A DE+ +L G + G H L
Sbjct: 449 RTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 65/291 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHDMDEFV 227
++ ++ I G LLGP GKTT+L +AG D SGR+ +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 228 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R + Q MTV E +AF R Q + +E++ R A
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA-----AEITPRVMEA--------- 128
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 --------------------LRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKP 163
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE + LD Q+ N L+ L G T + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 407 IVYQG-PREHVLEFFKFMGFECPKRKGVADFLQE-------VTSRKDQEQY 449
I G PRE +E PK VA F+ E V R D+++
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRV 264
|
Length = 375 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 62/282 (21%), Positives = 111/282 (39%), Gaps = 76/282 (26%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNG 220
P+ + + VS ++ G + ++G SGK+ L A+ G L V G + ++G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 221 HDMDEFVPQRTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGSRHEMLS 268
D+ + A I Q D N + MT+ + +A R + LS
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLR-----LHGKGLS 123
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG- 327
+ +E+A +L+++G+ D R
Sbjct: 124 KKEAKERAI---------------------------ELLELVGIP--------DPERRLK 148
Query: 328 -----ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTL 382
+SGG ++RV + + L DE +T LD + QI++ L++ + KGT L
Sbjct: 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTAL 207
Query: 383 ISLLQPAPETYDL------FDDIILISDGQIVYQGPREHVLE 418
I + T+DL D + ++ G+IV +GP E + +
Sbjct: 208 ILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 49/217 (22%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L GV+ + G + ALMG +G+GK+TL + G G I+ G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 923 SGYCEQNDIHSPNVTVYESL---LYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
DI ++ E ++ A+ P E+ F+ V E
Sbjct: 64 ------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1040 VVCTIHQPSI-DIVEAFDELFLL------KRGGQEIY 1069
V+ H + D ++ D + +L K G +E+
Sbjct: 157 VLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
D LVL VS PG +TAL+G SG+GK+T++ +L + G G +++ G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP--- 77
Query: 917 ETFARISGYCEQNDIHSPNVTV-YESLLYSAWLRLPLEVDSPTRKMFIEEVMELV----- 970
IS Y E +HS V E +L++ L+ + + E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 971 -----ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025
EL VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1026 VMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
V + + + RTV+ H+ + VE D++ +L G
Sbjct: 189 VQQALYDW-PERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-KKQETFA 920
L GVS G + AL+G +GAGKTTL+ + G R SG I+ G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGEDITGLPPHE 74
Query: 921 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLR 976
R Y + P +TV E+LL A+ R E +EEV EL L R
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD----LEEVYELFPRLKERR 130
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 131 NQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 1037 GRTVVCTIHQ 1046
G + + Q
Sbjct: 186 GGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGGYI---SGSIM-----ISGYP 913
+N VS G + L+G +GAGKTT M V G + SG I+ I+ P
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV-------GLVRPDSGKILLDDEDITKLP 72
Query: 914 KKQETFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPT--RKMFIEEVMELV 970
+ AR+ GY Q +TV ++++ +R E D RK ++ ++E
Sbjct: 73 MHKR--ARLGIGYLPQEASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEF 127
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
+ LR + S LS +R+R+ IA L ANP I +DEP +G+D A + R +
Sbjct: 128 HITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1031 RNTVDTGRTVVCTIH 1045
++ D G V+ T H
Sbjct: 183 KHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 56/258 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+L DVS I G +T ++GP +GK+T LL++ +L + SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 230 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
A +S + +NHI +TVR+ + F G P
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF------------------------GRFP----- 102
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ + T+ E + + ++ L L + D L +SGGQ++R ++
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRAFIAMVLAQDT 154
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL------FDDII 400
+ +DE LD + QI+ LR+ L T ++ L +D+ D I+
Sbjct: 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDHIV 207
Query: 401 LISDGQIVYQGPREHVLE 418
+ +G++V QG + +++
Sbjct: 208 ALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFAR 921
LL VS PG L+G +GAGK+TL+ +LAG SG + R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 922 ISGYCEQNDIHSPNVTVYESLL--YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
+ GY Q P TV + ++ + L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 980 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1021 RA 1022
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 38/170 (22%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE 917
+ +LL +S G A++G +GAGK+TL+ +LAG G +SG++ G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTV-KVGETVKIG 388
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
F ++++ P+ TV E + E + +R
Sbjct: 389 YFD-----QHRDEL-DPDKTVLE---------------------ELSEGFPDGDEQEVRA 421
Query: 978 AL--VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 55/253 (21%), Positives = 92/253 (36%), Gaps = 68/253 (26%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM----DE-- 225
+ V+ +R G + LGP +GKTT + L L + SG G+D+ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 226 ----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
VPQ + ++T RE L R G L + E+A
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAE---- 106
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
+L++ L D + SGG ++R+
Sbjct: 107 -----------------------ELLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 342 MVGPAQALFMDEISTGLDSST---TFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398
++ LF+DE +TGLD T + + +L++ G T++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-----GVTILLTTHYMEEADKLCDR 193
Query: 399 IILISDGQIVYQG 411
I +I G+I+ +G
Sbjct: 194 IAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 60/271 (22%)
Query: 149 ANIIEGFLNSVN-ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD 207
NIIE ++ ++ + + L+ILK V +++ G ++GP SGK+TLL LAG D
Sbjct: 4 ENIIE--VHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 208 SSLRVSGRVTYNGHD---MDE----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 260
S SG V G +DE + R ++ Q + I +T E +A +G
Sbjct: 62 PS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 261 GSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320
S +A A +L+ +GL
Sbjct: 119 SSAD------------------------SRAGAKA----------LLEAVGL-------- 136
Query: 321 GDEML---RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHIL 377
G + +SGG+++RV G LF DE + LD +T +I + L +++
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD-LLFALNRE 195
Query: 378 KGTTLISLLQPAPETYDLFDDIILISDGQIV 408
+GTTL+ L+ P+ D + + G++V
Sbjct: 196 RGTTLV-LVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL D+S + G++T L+GP GK+TLL A L SG V + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 230 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRHEMLS---ELSRREKAAGIKPDP 283
+ A ++ QH +TVRE +A+ R LS LS + A
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY--------GRSPWLSLWGRLSAEDNAR------ 118
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
++ M+ ++ AD + D +SGGQ++R ++
Sbjct: 119 -VNQAMEQ------------------TRINHLADRRLTD-----LSGGQRQRAFLAMVLA 154
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
+ +DE +T LD + +++ +R+ +G T++++L + D +++++
Sbjct: 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLA 212
Query: 404 DGQIVYQGPREHVL 417
+G ++ QG E V+
Sbjct: 213 NGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-10
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 40/218 (18%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFA 920
L+ S +PG AL+G SG+GK+T+ ++AG + SG I+ G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW----SGEILFDGIPREEIPRE 549
Query: 921 RISG---YCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
++ +Q DI TV ++L + W PT + +++ + +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLW--------DPT--IPDADLVRACKDAAIHD 596
Query: 978 ALVGLPGV---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
+ PG + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 1029 TVRNTVDTGRTVVCTI--HQPSIDIVEAFDELFLLKRG 1064
+R R C I H+ S I + DE+ +L+RG
Sbjct: 657 NLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD 224
R T L +VS ++ G + L+GP SGK+TLL A+AG L + SG + +G D+
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 225 EFVPQ---RTAAYISQ 237
+ + R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-10
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIM-----ISGYPK 914
+ VS PG + ++G SG+GK+TL L G + G SG ++ + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 915 KQET--FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
++ + Q+ + S P +T+ + + + L ++ E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR--AVELLEQV 140
Query: 971 EL-NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 1030 VRN-TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+++ + G V+ H + + E D + ++ +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 40/208 (19%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISGSIMISG---YPKKQ 916
++GVS + G + ++G SG+GK+ L + G + + G I+ G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 917 ETFARISG----YCEQNDIHSPNVT------VYESLLYSAWLRLPLEVDSPTRKMFIEEV 966
+ +I G Q+ + S N + E L L ++K E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--------LHGKGLSKKEAKERA 131
Query: 967 MELVELNPLRQALVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1019 DARAAAIVMRTVRNTV-DTGRTVVCTIH 1045
D A ++ ++ + G ++ H
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 65/213 (30%), Positives = 96/213 (45%), Gaps = 36/213 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L ++ G L ++G SG GKTTL++++AG Y GSI + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
G QN+ P V +++ + L V+ R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQML----------KKVGLE 119
Query: 984 G-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV-- 1034
G + LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+TG+ V+ H DI EA EL LL G
Sbjct: 177 ETGKQVLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-10
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 879 LMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-ETFARISGYCEQNDIHSPNVT 937
L+G SG GKTTL+ +LAG + SGSIM+ G R Q+ P++T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLT 997
V E++ + +R +V K + E + LV+L LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 998 IAVELVANPSIIFMDEPTSGLDAR 1021
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKK----- 915
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
++ A + EQ + T +S + + L + TR+ ++E + LV+
Sbjct: 76 RQQVATVFQDPEQQIFY----TDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHF 129
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
R + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 130 RHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 1036 TGRTVVCTIHQPSIDIV-EAFDELFLLKRG 1064
G V+ + H ID++ E D +++L++G
Sbjct: 185 QGNHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQET- 918
+N ++ G L+G SG+GKTT M + I SG I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 919 --FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
R GY Q P++TV E++ + +L L+ + +E++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKL-LKWPKEKIRERADELLALVGLDP-A 126
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1030
+ P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 127 EFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEFK 179
Query: 1031 RNTVDTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
R + G+T+V H DI EAF D + ++K G
Sbjct: 180 RLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-10
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 61/261 (23%)
Query: 158 SVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVT 217
N L +L D+S ++ G + LGP +GKTT + + G + SG +T
Sbjct: 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEIT 58
Query: 218 YNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
++G + +R A I + +T RE L AR G+
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------- 102
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
ID +L ++GL A V G S G K+R
Sbjct: 103 -----RKKRIDE------------------VLDVVGLKDSAKKKVK-----GFSLGMKQR 134
Query: 336 VTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK---GTTLIS--LLQPAP 390
+ ++G L +DE + GLD + LR+ I L+ T LIS LL
Sbjct: 135 LGIALALLGNPDLLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS--- 187
Query: 391 ETYDLFDDIILISDGQIVYQG 411
E + D I +I+ G+++ +G
Sbjct: 188 EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
LK+ + + G +LG SGK+TLL LAG D G +T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 230 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
T + ++Q H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ AA + + + +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAAL----QQVGLEKL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL-----FDDIIL 401
+DE + GLD T Q++ L + +G TL+ + T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFEH---AEGKTLLMV------THRLRGLERMDRIIV 544
Query: 402 ISDGQIVYQGPREHVLE 418
+ +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGSIMISG-----YPKKQ 916
LL V+ G + LMG SG GK+TL+ + G G + +G + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
R G Q+ + P+++V ++LL++ LP + R+ +E R
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALE-------R 121
Query: 977 QALVGL----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
L G P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 122 SGLDGAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 68/277 (24%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
L VS I+ G LLGP GKTTLL +AG + SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+R + Q+ +TV E +AF R + + +E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
L ++ L+ A+ ++ SGGQ++RV +V +
Sbjct: 115 ------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEPKV 151
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHI-LK------GTTLISLLQPAPETYDLFDDIIL 401
L +DE LD LR+ + + LK G T + + E + D I +
Sbjct: 152 LLLDEPLGALDL--------KLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203
Query: 402 ISDGQIVYQG-PREHVLEFFKFMGFECPKRKGVADFL 437
++ G+I G P E +E P + VADF+
Sbjct: 204 MNKGKIQQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 47/250 (18%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM--DEFVPQ 229
L +VS + GR+ LGP +GK+T + + G L SG V G D+ + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
R Y+ +H+ +M VRE L F A G M
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYG-----------------------------M 105
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
K + + ++ +++GL +G +S G ++RV + ++ + L
Sbjct: 106 KGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVL 155
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409
+DE +TGLD + +I N ++ I K T+I E + D +I+I+ G+IV
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212
Query: 410 QGPREHVLEF 419
+ +
Sbjct: 213 DKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 63/263 (23%), Positives = 104/263 (39%), Gaps = 49/263 (18%)
Query: 161 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG 220
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 221 HDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRRE 274
D+ +R I QH N + TV E +A GV + E E
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV-PKAE------IEE 119
Query: 275 KAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKK 334
+ +L+++GL+ AD +SGGQK+
Sbjct: 120 RV---------------------------LELLELVGLEDKADAYPAQ-----LSGGQKQ 147
Query: 335 RVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD 394
RV + + L DE ++ LD TT I+ LR I+ G T++ +
Sbjct: 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRD-INRELGLTIVLITHEMEVVKR 206
Query: 395 LFDDIILISDGQIVYQGPREHVL 417
+ D + ++ G++V +G E V
Sbjct: 207 ICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 27/200 (13%)
Query: 866 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGSIMISG---YPKKQETF 919
V+ + G + AL+G SG GKTT + + + G ++G I++ G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 920 A--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
A R G Q P ++V+++++ A L+L D + +ME+ E +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAERSLRGA 132
Query: 978 AL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MR 1028
AL + P +GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 133 ALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 1029 TVRNTVDTGRTVVCTIHQPS 1048
T V T V +HQ +
Sbjct: 192 TDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG--YPKKQE 917
+L G+ + G + ++G SG+GK+TL+ + + SG+I+I G ++
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKK 69
Query: 918 TFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+ G Q P++TV E++ + P++V ++ E +EL+E
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK-- 122
Query: 975 LRQALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+
Sbjct: 123 -----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 1030 VRNTVDTGRTVVCTIHQ 1046
+++ + G T+V H+
Sbjct: 178 MKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 49/248 (19%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N + ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 232 A----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID- 286
A I Q + I E+TV E L +G RH +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENLY-------IG-RHLT-------KKVCGV---NIIDW 119
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
M+ A +L +GL V D V + +S K+ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 347 QALFMDEISTGLDSSTT---FQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
+ + MDE ++ L + F I+N LR+ +GT ++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 404 DGQIVYQG 411
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG----YPKKQETF 919
L G+S + G + ++G SG+GK+TL+ L G + SGSI + G K
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKL 75
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV----MELVELNPL 975
R G Q P++TV E++ + P++V +K+ E +EL+E
Sbjct: 76 RRKVGMVFQQFNLFPHLTVLENVTLA-----PVKV----KKLSKAEAREKALELLEK--- 123
Query: 976 RQALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +
Sbjct: 124 ----VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 1031 RNTVDTGRTVVCTIHQ 1046
++ + G T++ H+
Sbjct: 180 KDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 46/247 (18%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF 226
HL + D++ + G + +LGP +GK+TLL +AG SG + NG D
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 227 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
P +R + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
+K A + ++ + +GL + +SGGQ++RV +V
Sbjct: 100 ---LKLNAEQREK----VEAAAAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 346 AQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
L +DE + LD + +++ + Q + + TL+ + + + D ++ + +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 406 QIVYQGP 412
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 51/245 (20%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T L D+S + G + LLGP +GKTT + + G + SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
Y+ + +M V + L + A+ +G L + E I
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKG----------LKKEEARRRI---------- 109
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
D L+ L L A+ + + +S G +++V ++ + L
Sbjct: 110 --------------DEWLERLELSEYAN-----KRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 350 FMDEISTGLDSSTT---FQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+DE +GLD ++ L + G T+I +L D ++L++ G+
Sbjct: 151 ILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVEELCDRVLLLNKGR 205
Query: 407 IVYQG 411
V G
Sbjct: 206 AVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 62/272 (22%), Positives = 102/272 (37%), Gaps = 62/272 (22%)
Query: 160 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYN 219
+ +++ + ++D+S I G + LG +GK+T L L G L + SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVN 84
Query: 220 GHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
G D P R + + M + L + L L E I
Sbjct: 85 GKD-----PFRRREEYLRSIGLV--MGQKLQLWWD------------LPALDSLEVLKLI 125
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
PD D F + D++ +IL L + + + R +S GQ+ R
Sbjct: 126 YEIPD-DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELA 168
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ-----------SIHILKGTTLISLLQP 388
++ P + LF+DE + GLD + I L++ + HI
Sbjct: 169 AALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIA------- 221
Query: 389 APETYDLFDDIILISDGQIVYQGPREHVLEFF 420
L D ++LI GQ+V+ G + E F
Sbjct: 222 -----TLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 63/255 (24%), Positives = 94/255 (36%), Gaps = 52/255 (20%)
Query: 187 LLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEM 245
LLGP GKTTLL LAG SG + +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDY 305
TV E +AF + + V +E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
L+++ L D +SGGQ++RV +V + L +DE + LD Q
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGF 425
+ L+ L G T + + E + D I ++ G+I G E + +
Sbjct: 139 MQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI--------Y 189
Query: 426 ECPKRKGVADFLQEV 440
E P VA F+ E+
Sbjct: 190 EEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG--YPKKQETFAR 921
L V+ PG + AL+G +GAGK+TLM VL+G G+I I+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 922 ISG----YCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
G Y E + I +TV E+L R T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RH------LTKKVCGVNIIDWREMRVRAA 127
Query: 978 AL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1026
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1027 MRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
M +R G +V H+ + +I D ++K G V S
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGS---SVCS 226
|
Length = 510 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 59/276 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM-----D 224
LK+++ I ++T L+GP GK+TLL +L L +R+ G+V ++G D+ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N M++ + +A+ R G+ + E+ + K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-WDEV 134
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
D +A LGL SGGQ++R+ +
Sbjct: 135 KDRLHDSA-----------------LGL----------------SGGQQQRLCIARALAV 161
Query: 345 PAQALFMDEISTGLDSSTTFQI---VNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+ L +DE ++ LD T +I + L++ I+ T ++ Q A + D
Sbjct: 162 EPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH--NMQQAARIS----DRTAF 215
Query: 402 ISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
DG++V GP E + F PK K D++
Sbjct: 216 FYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 40/214 (18%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE 917
EDK +L GV+ + G + A+MG +G+GK+TL +AG + SG+I+ G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFI------------EE 965
P+ L + + P E+ + F+ EE
Sbjct: 66 LLEL-----------EPDERARAGLFLA--FQYPEEIPGVSNLEFLRSALNARRSARGEE 112
Query: 966 VMELVELNPLRQALVGLPGVS----------GLSTEQRKRLTIAVELVANPSIIFMDEPT 1015
++L++ L +A + L G+ G S ++KR I + P + +DE
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172
Query: 1016 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
SGLD A IV + + R+ + H +
Sbjct: 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSI---MISGYPK--------K 915
VS PG + ++G SG+GKTTL+ ++GR T +G++ M G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 916 QETFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFI----------- 963
+ R G+ QN + V SA + R M I
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQV------SAGGNIG------ERLMAIGARHYGNIRAE 130
Query: 964 -EEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
++ +E VE++ R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 AQDWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 186
Query: 1023 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
A ++ +R V + G VV H ++ + A D L ++K+G
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK----QETF 919
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQA 978
Q P ++V E++ + LP + + + ++ ++L+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068
V C ++ V+A + + R GQ +
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 4e-09
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 52/195 (26%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+T L+D+S + G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE-------ARERAEE---- 114
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV----TT 338
+L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFENAYPHQ-----LSGGMRQRVALARA- 145
Query: 339 GEMMVGPAQALFMDE 353
+ V P L +DE
Sbjct: 146 --LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 47/192 (24%), Positives = 67/192 (34%), Gaps = 47/192 (24%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--V 227
T+ D+S + G + GP +GKTTLL LAG L +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+ Y+ E+T E L F R G G+ + E
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEA----------------- 114
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
L +GL D VG +S GQ++RV + + PA
Sbjct: 115 -------------------LAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAP 150
Query: 348 ALFMDEISTGLD 359
+DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 870 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFAR--ISGYCE 927
F G +TA++G SG+GK+TL++++AG +T SG ++I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 928 QNDIHSPNVTVYES--LLYSAWLRLPLE----VDSPTRKMFIEEVMELVELNPLRQALVG 981
+N++ ++TV ++ L S L+L E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1038
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRG 1064
TV+ HQP D + L G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 50/219 (22%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE----- 225
+LK ++ G + LLG +GK+TLLL L G L SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 226 FVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q D+ + V + +AF G+
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL------------------------ 99
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
E L +G + L SGG+KKRV +
Sbjct: 100 ----------SEAEVERRVREALTAVGASGLRERPT--HCL---SGGEKKRVAIAGAVAM 144
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
L +DE + GLD + Q++ LR+ +G T++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILRRLRA--EGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 59/273 (21%), Positives = 100/273 (36%), Gaps = 66/273 (24%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
K L +VS I G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 223 MDEFVPQRTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
+ + + Q + + TV L+ R G+ + ++EL +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ--- 127
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
G+ P S + + +SGGQ++R+
Sbjct: 128 VGLPP------------------SFLDRRPHE-------------------LSGGQRQRI 150
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLI------SLLQP 388
++ + L +DE ++ LD S QI+N L + + K G T + +L+
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLL---LELKKERGLTYLFISHDLALV-- 205
Query: 389 APETYDLFDDIILISDGQIVYQGPREHVLEFFK 421
+ D I ++ +GQIV GP E +L
Sbjct: 206 ----EHMCDRIAVMDNGQIVEIGPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQETFARISGYCEQN 929
G L L+G +GAGKTTL+ R G I G++ ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 930 DIHSPN--VTVYESLLYS-----AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
+ + ++V +++ WLR P D + + + V L L VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1043 TIHQPSIDIVEAFD 1056
T H D+ +A
Sbjct: 169 TTH----DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS--GSIMISGYPKKQET 918
+L VS + G L+G SG GK+TL +L G + G +S G + K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 919 FARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
F R Q+ + P +TV + + LR +D +K I E++++V L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS-- 141
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066
T I + +V++F + + GQ
Sbjct: 200 FGTAYLFITH-DLRLVQSFCQRVAVMDKGQ 228
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L ++ I G L+GP +GK+TLL + + L SG + NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 232 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD----II 400
L DE + LD TT++I+N L + I+ GTT++ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMN-LLKKIN-KAGTTVVV----ATHAKELVDTTRHRVI 207
Query: 401 LISDGQI 407
+ G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 67/253 (26%), Positives = 99/253 (39%), Gaps = 55/253 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
++ D+S I G LLGP +GK+T+ L G + G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 231 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ Q DN E TVRE L R G +S RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
Q L +DE +TGLD I LR + +G T++ E L D + ++
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSL--LARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 405 GQIVYQGPREHVL 417
G+ + +G R H L
Sbjct: 211 GRKIAEG-RPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 71/278 (25%), Positives = 111/278 (39%), Gaps = 60/278 (21%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
T LKD+S ++ G LLGP GKTTLL +AG L+ + +G + G D+
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQGGRDITRLP 72
Query: 228 PQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
PQ R + Q +TV + +A+ + +G+G R E A +
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----------RAEVAERV------- 115
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+L ++GL G +SGGQ++RV +
Sbjct: 116 -----------------AELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSP 153
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILK---GTTLISLLQPAPETYDLFDDIILIS 403
L +DE + LD+ ++ LR I L+ G T I + E + D I++++
Sbjct: 154 GLLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN 209
Query: 404 DGQIVYQG-PREHVLEFFKFMGFECPKRKGVADFLQEV 440
G I G P+E + P VADF+ EV
Sbjct: 210 HGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETF 919
+LN +S + R G A+ G SG GK+TL+ ++A + SG+++ G K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAY 75
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
+ YC Q + TV ++L++ +R P R ++ + A
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAALDLL-----------AR 119
Query: 980 VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRT 1029
LP ++ LS +++R+ + L P I+ +DE TS LD ++ R
Sbjct: 120 FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179
Query: 1030 VRNTVDTGRTVVCTIHQP 1047
VR + V+ H
Sbjct: 180 VR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQET--FARISGYC 926
+ G TAL+G +G+GK+TL+ L G + T G ++ G I++S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 927 EQNDIHSPNVTVYESLLYS--AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG 984
Q P ++E + A+ + + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP- 142
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 -FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1045 HQPSIDIVEAFDELFLLKRG 1064
H D+ + D ++LL++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L+GV+ +TALMG SG+GK+TL+ V + +I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 923 SG--YCEQNDIHS--------------------PNVTVYESLLYSAWLRLPLEVDSPTRK 960
SG Y + DI PN++++E++ L L L ++K
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVA----LGLKLNRLVKSKK 117
Query: 961 MFIEEVMELVELNPLRQAL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
E V +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 1018 LDARAAA 1024
LD A
Sbjct: 177 LDPENTA 183
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
+ +SGGQ++RV ++ L +DE ++GLD ++ +++ LR+ +G T+I
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 384 SLLQPAPETYDLFDDIILISDGQ 406
+ D +I++ DG+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-08
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 37/207 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQ---ET 918
L+ VS RPG A++G G+GK+TL+ +L G Y GS+++ G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-----------VM 967
R GY Q+ L+ LR + + +P + ++ V
Sbjct: 537 LRRNIGYVPQD-----------PRLFYGTLRDNIALGAP----YADDEEILRAAELAGVT 581
Query: 968 ELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
E V +P + LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641
Query: 1028 RTVRNTVDTGRTVVCTIHQPSI-DIVE 1053
++ + G+T+V H+ S+ D+V+
Sbjct: 642 DRLKRWL-AGKTLVLVTHRTSLLDLVD 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 63/255 (24%), Positives = 96/255 (37%), Gaps = 61/255 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTT---LLLALAGKLDSSLRVSGRVTYNGHDMDEF 226
++ +S ++ G LLGP +GKTT +LL L S+ + G E
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EP 70
Query: 227 VPQRT------AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
VP R + Q DN + TVRE L R G LS + R +
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG-------LSAAAARALVPPL- 122
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
L+ L+ AD VG+ +SGG K+R+T
Sbjct: 123 --------------------------LEFAKLENKADAKVGE-----LSGGMKRRLTLAR 151
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400
+V L +DE +TGLD + LR + +G T++ E L D +
Sbjct: 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLC 209
Query: 401 LISDGQIVYQG-PRE 414
+I +G+ + +G P
Sbjct: 210 VIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L ++ +TAL+G SG GK+TL+ D++ G + I G ++ G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 914 KKQETFA---RISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
KK + R+ ++ PN +++Y+++ Y RL D K ++E++
Sbjct: 73 KKIDVVELRRRVGMVFQK-----PNPFPMSIYDNIAYG--PRLHGIKD----KKELDEIV 121
Query: 968 ELVELNPLRQALVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
E L++A L GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 122 E----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1019 DARAAA 1024
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 856 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIS-GSIMISGY 912
+ LNG+S G ++G +GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 913 PKKQ--ETFARI-----SGYCEQNDIHSPNVTVYESLLYSAWLR-----LPLEVDSPTRK 960
+ AR+ +G P +T+ E+L A R L ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 961 MFIEEVMELVE-LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
F E + L L +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1020 ARAAAIVM 1027
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 52/220 (23%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
L DVS IR G L GP +GKTTLL L G L S G+V G D++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 231 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGA------- 120
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
L+ +GL+ AD +SGG+++RV +V
Sbjct: 121 ----------------------ALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
L DE + LD + +I++ L++ + GTT+I
Sbjct: 154 NSPPLLLADEPTGNLDPDLSERILDLLKRL-NKR-GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 59/254 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
R Y+ + +MTV + L + A +G+ KA K + ++
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM-------------PKAEIQK---KLQAWL 115
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
+ G++ + + +S G ++++ ++ + L
Sbjct: 116 ERLEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELL 152
Query: 350 FMDEISTGLDSSTTFQIVNS--LRQSIHILK--GTTLI---SLLQPAPETYDLFDDIILI 402
+DE +GLD VN L+ +I LK G T+I ++ E L D ++++
Sbjct: 153 ILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLML 203
Query: 403 SDGQIVYQGPREHV 416
GQ V G E +
Sbjct: 204 KKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 3e-08
Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 47/240 (19%)
Query: 854 PGVLEDKLVLLNGVSGAFRPGV-----------LTALMGVSGAGKTTLMDVLAGRKTGGY 902
PGV LV + SG RP V +TA +G +GAGKTT + +L G
Sbjct: 927 PGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-- 982
Query: 903 ISGSIMISGYPKKQET---FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPT 958
SG++++ G K ET R S G C Q++I ++TV E +L+ A L+ ++
Sbjct: 983 TSGTVLVGG--KDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA-- 1038
Query: 959 RKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
++ +E ++E L+ R LS +++L++A+ V + ++ +DEPTSG+
Sbjct: 1039 -QLEMEAMLEDTGLHHKRNE-----EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092
Query: 1019 DA---RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075
D R+ ++ R +GRT++ + H DE LL G I + S GR
Sbjct: 1093 DPYSRRSIWDLLLKYR----SGRTIIMSTHH--------MDEADLL---GDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 52/249 (20%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF 226
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 227 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
P QR + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR---GISGGQKKRVTTGEMM 342
+K A + ++ D + D + R +SGGQ++RV +
Sbjct: 99 ---LKLNAEQQEKVV------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCL 143
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
V P L +DE + LD +++ ++Q + T L+ + + + I ++
Sbjct: 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVV 202
Query: 403 SDGQIVYQG 411
S G+I
Sbjct: 203 SQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 54/252 (21%)
Query: 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 894
SI F+ + Y + PG +K L N +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDY-------IYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 895 AGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEV 954
SG+I I+GY ET + L ++ L
Sbjct: 54 NALLKPS--SGTITIAGYHITPETGNKN--------------------LKKLRKKVSLVF 91
Query: 955 DSPTRKMFIEEVMELVELNPLR----------QALVGLPGVSGLSTE------------Q 992
P ++F V++ VE P +AL L V GLS + Q
Sbjct: 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQ 150
Query: 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIV 1052
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D+
Sbjct: 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVA 209
Query: 1053 EAFDELFLLKRG 1064
E D++ +L+ G
Sbjct: 210 EYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 80/265 (30%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
LK ++ I+ G +T +LG +GK+TL L G L S SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 232 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKA 291
Y + G M +RE++ + DPD +F
Sbjct: 72 --YSRK-----GLMKLRESVGM-------------------------VFQDPDNQLF--- 96
Query: 292 AATEGQEASVVTDYILKILGLDVCADTM----------VGDEMLRG-----ISGGQKKRV 336
ASV D + L + D + G E L+ +S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL- 395
++V + L +DE + GLD +I+ L + L T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 396 -----FDDIILISDGQIVYQG-PRE 414
D++ ++ +G+++ QG P+E
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 41/204 (20%)
Query: 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS-- 923
VS PG + ++G SG+GKTTL++ L+ R +G + + +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEA 81
Query: 924 ----------GYCEQN--DIHSPNVT----VYESLLYSAW-----LRLPLEVDSPTRKMF 962
G+ Q+ D V+ + E L+ +R +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAG---- 132
Query: 963 IEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
+ +E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD
Sbjct: 133 --DWLERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 1023 AAIVMRTVRNTV-DTGRTVVCTIH 1045
A ++ +R V + G VV H
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
LL +S G L L G +GAGKTTL+ ++AG G I+ K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 923 SGYC---EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
C ++ I +P +T+ E+ LY ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1040 VVCTIHQ 1046
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 48/217 (22%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQET 918
L ++ G L A++G G+GK++L+ L G K G + GSI
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI----------- 68
Query: 919 FARISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
Y Q P N T+ E++L+ P + E+V++ L P
Sbjct: 69 -----AYVSQ----EPWIQNGTIRENILFG----------KPFDEERYEKVIKACALEPD 109
Query: 976 RQAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVM 1027
+ L +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 110 LEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + +T + HQ + ++ D++ +L G
Sbjct: 169 NCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L VS + G A++G +G+GK+TL +L G +G+I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 922 IS---GYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
+ G QN D TV + + + LE R+ +E V + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFG------LENIGVPREEMVERVDQALRQVGMED 132
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
L P LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1038 R-TVVCTIHQPSIDIVEA 1054
TV+ H D+ EA
Sbjct: 191 GITVLSITH----DLDEA 204
|
Length = 279 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-08
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 51/247 (20%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF---V 227
IL D+S I+ T ++G SGK+TL L G + SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
++ Y+ Q + +I ++ E L A+ + + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
TE E ISGGQK+R+ ++ ++
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL---LQPAPETYDLFDDIILISD 404
L +DE ++ LD+ T +IVN+L L+ T+I + L A ++ D II++
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVAKQS----DKIIVLDH 683
Query: 405 GQIVYQG 411
G+I+ QG
Sbjct: 684 GKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 42/224 (18%)
Query: 865 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSI---MISGYPK------- 914
VS PG + ++G SG+GK+TL+ LAGR G+ M SG
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 915 -KQETFARIS-GYCEQNDIH------SPNVTVYESLL-----YSAWLRLPLEVDSPTRKM 961
++ R G+ QN S + E L+ + +R T +
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-------ATAQD 130
Query: 962 FIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
++EEV E++P R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 WLEEV----EIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 1022 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
A ++ +R V D G V+ H + + A L ++++G
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 69/229 (30%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L + + VL + GVSG+GK+TL+ G Y SG + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN----PLRQAL 979
S N + FI+++ L+++ L Q L
Sbjct: 57 --------FSRNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEG 1086
TV+ H D++ + D + G G+ ++ F G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGS--------GKSGGKVV--FSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-08
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 43/249 (17%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRV--SGRVTYNGHDMDEFVP 228
+L +++ I+PG ++GP SGK+TL KL L G+V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+R R GV + +L S R+ A P +
Sbjct: 527 ----------------AWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+ AA G I L +T VG E +SGGQ++R+ +VG +
Sbjct: 564 IHAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
L DE ++ LD + I+ ++R+ I +G T+I + T D II++ GQI
Sbjct: 615 LIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIA 670
Query: 409 YQGPREHVL 417
G E +L
Sbjct: 671 ESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 55/244 (22%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
L+DVS I G + ++LGP GKTTLL +AG + S G + NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGA 74
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
+L ++GL + + +SGG ++RV + Q L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 351 MDEISTGLDSSTTFQIVNSL----RQSIHILKGTTLISLLQPAPETYDLFDDIILIS--D 404
+DE LD+ T Q+ L +++ K LI+ E L ++++S
Sbjct: 156 LDEPFGALDALTREQMQELLLDLWQET---GKQVLLIT--HDIEEALFLATRLVVLSPGP 210
Query: 405 GQIV 408
G++V
Sbjct: 211 GRVV 214
|
Length = 259 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 38/231 (16%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-YPKKQ 916
E++LV LN +S F + ++G SG+GK+TL+ G Y G+I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 917 ETFARISGYCEQNDIHS--------------PNVTVYESLLYSAWLRLPL-----EVDSP 957
+ + I + P +++ + + P+ + ++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 958 TRKMFIEEVMEL----VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1013
F M L +E +P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 1014 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
PT+GLD + +M+ + + +TV H ++E DE+ ++ +G
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 47/195 (24%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-- 228
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
QR + Q ++V + L F+ A +G R+ + L R DP
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT- 134
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+SGGQ+ RV ++
Sbjct: 135 -----------------------------------------LSGGQRARVALLRALLAQP 153
Query: 347 QALFMDEISTGLDSS 361
+AL +DE + LD +
Sbjct: 154 KALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 33/207 (15%)
Query: 870 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFAR--ISGYCE 927
G + A++G SGAGK+TL++++AG +T SG I+I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 928 QNDIHSPNVTVYES--LLYSAWLRLPLE----VDSPTRKMFIEEVMELVELNPLRQALVG 981
+N++ + ++TV ++ L S L+L E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 1037
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRG 1064
T++ H P D D + L G
Sbjct: 181 MTLLMVTHHPE-DAARIADRVVFLDNG 206
|
Length = 231 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-08
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 53/255 (20%)
Query: 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 895
+ FD++++S D R GV VS +PG A++G +GAGK+TL+++L
Sbjct: 335 VEFDDVSFSYDNS----RQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL- 381
Query: 896 GRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVD 955
++ SG I+I G I + + V ++ L++ + + V
Sbjct: 382 -QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 956 SPTRKMFIEEVME---------LVELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVAN 1005
P EE+ +E P +VG G LS +R+RL IA L+ +
Sbjct: 433 RPDATD--EEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKD 489
Query: 1006 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-------------DIV 1052
P I+ +DE TS LD A V + + + GRT H+ S +V
Sbjct: 490 PPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548
Query: 1053 EA--FDELFLLKRGG 1065
E+ FDE L+ RGG
Sbjct: 549 ESGSFDE--LVARGG 561
|
Length = 588 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYISG-SIMISGYPKK 915
+N A G + +MG+SG+GK+T + +L AG+ +I G +IM +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+E + G Q P++T+ ++ L L RK E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK---EKALELLKL--- 116
Query: 976 RQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1031 RNTVDT-GRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+ T +T+V H D+ EA D + ++K G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-08
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQET 918
L+ VS + G + AL+G +G+GK+TL+ +AG SG I+I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 919 FARISGYCEQ 928
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 924 ---GYCEQNDIHSPNVTVYESLLYS--AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
G Q+ P+ V+ S ++ A+ + + +D + +EE ++ V + R
Sbjct: 79 SKVGLVFQD----PDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK 134
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G+
Sbjct: 135 -----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK 189
Query: 1039 TVVCTIHQPSIDI-VEAFDELFLLKRG 1064
TV+ H +D+ E D++ +LK G
Sbjct: 190 TVIVATH--DVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 9e-08
Identities = 62/267 (23%), Positives = 101/267 (37%), Gaps = 50/267 (18%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD---M 223
+ + DV+ I G +L+GP SGKTT L + ++ + SG + +G D +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
D +R Y+ Q +TV E +A + G R +K A
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE--------RIKKRA------ 114
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
D +L ++GLD D +SGGQ++RV +
Sbjct: 115 --------------------DELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALA 151
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
L MDE LD T Q+ ++ + G T++ + E L D I ++
Sbjct: 152 ADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRIAVMD 210
Query: 404 DGQIVYQGPREHVL-----EFFK-FMG 424
G+IV + +L +F + F G
Sbjct: 211 AGEIVQYDTPDEILANPANDFVEDFFG 237
|
Length = 309 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 9e-08
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGSIMISGYPKKQ 916
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 917 ETFARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
T AR G Q+ + TV+ ++ LPLE+D+ + +V EL+ L L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
P S LS Q++R+ IA L +NP ++ DE TS LD ++ ++
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 1036 T-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSH 1079
G T++ H+ +D+V+ + + G+ I G++ SH
Sbjct: 189 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-08
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L+ VS R G + +L G +GAGK+TLM VL+G G G I+ G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 924 GYCEQND---IHS-----PNVTVYESL-LYSAWLRLPLEVDSPTRKMFIE--EVMELVEL 972
E+ IH ++V E++ L + + +D M++ +++ ++L
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGI-MDYD--AMYLRAQKLLAQLKL 133
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
+ P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 134 D----INPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068
G + H+ ++ V+A + + R G+ I
Sbjct: 189 LKAHGIACIYISHK--LNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD-- 224
T+L DVS I G + LLGP SGK+TLL +AG L+ SG + +G D+
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 225 --EFVPQRTA-AYISQHDNHIGEMTVRETLAF 253
E P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 54/231 (23%), Positives = 79/231 (34%), Gaps = 56/231 (24%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE--F 226
+ + +S + G + GP GKTTLL LAG L SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 227 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
P R Y+ E++ E L F A
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAA------------------------------ 99
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
A ++A L +GL D +S GQ++R+ + + A
Sbjct: 100 -IHGGAQRTIEDA-------LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-----TTLISL-LQPAPE 391
+DE +T LD + + LR H+ +G TT L L A E
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVLLTTHQDLGLVEARE 195
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 69/297 (23%), Positives = 114/297 (38%), Gaps = 95/297 (31%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDS-SLRVSGRVTYNGHDMD 224
+LK +S + G + +++GP SGK+TLL L G + DS S+ V G + D+
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ +R + Q N +TV E + + K +
Sbjct: 74 KL--RRKVGMVFQQFNLFPHLTVLENVTLAPV------------------KVKKLS---- 109
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG-----DEMLRGISGGQKKRVTTG 339
KA A E +A L++L VG D +SGGQ++R
Sbjct: 110 -----KAEARE--KA-------LELL-------EKVGLADKADAYPAQLSGGQQQR---- 144
Query: 340 EMMVGPAQALFM-------DEISTGLDSSTT---FQIVNSLRQSIHILKGTTLISLLQPA 389
V A+AL M DE ++ LD ++ L + G T+I +
Sbjct: 145 ---VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-----GMTMIIV---- 192
Query: 390 PETYDL-F-----DDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
T+++ F D +I + G+I+ +GP E F+ PK + FL ++
Sbjct: 193 --THEMGFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ----ETF 919
L+G++ RPG AL+G SGAGK+TL +L + SG I++ G +Q E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
AR++ + + + +V E++ Y EV++ R E + L
Sbjct: 414 ARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDTY 469
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
+G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT
Sbjct: 470 LGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRT 527
Query: 1040 VVCTIHQ 1046
+ H+
Sbjct: 528 TLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP------KK 915
LN VS + + G AL+G SG GK+TL +L G + G +S G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS----WRGEPLAKLNRAQ 83
Query: 916 QETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN 973
++ F R Q+ I + P TV E + LR L +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-07
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 35/217 (16%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS--GSIMISGYPKKQ--- 916
L ++ G AL+G SGAGKT+L++ L G ++ GS+ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
E++ + + QN P+ T+ +++L L P D E++ + +E +
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVL----LGNPDASD--------EQLQQALENAWVS 465
Query: 977 QALVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
+ L LP +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM
Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + N +T + HQ ++ + +D++++++ G
Sbjct: 526 QAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQET 918
V +N VS R G + +MG+SG+GK+TL+ R I SG ++I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 919 FARIS-------GYCEQNDIHSPNVTVYESLLYSAWLRLPLE---VDSPTRKMFIEEVME 968
+ Q+ P+ TV E++ + LE V R+ E +E
Sbjct: 93 RKELRELRRKKISMVFQSFALLPHRTVLENVAF------GLEVQGVPRAEREERAAEALE 146
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LV L LS ++R+ +A L +P I+ MDE S LD
Sbjct: 147 LVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL--LALAGKLDSSLRVSGRVTYNGHD- 222
KH LKD++ I ++T L+GP GK+TLL L L RV G V +G +
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 223 ----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 260
+D +R + Q N M++ + +A+ R G+
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI 117
|
Length = 253 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-07
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 33/215 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L+ +S PG AL+G SG+GK+TL++++ + SG I++ G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 924 GYCEQ--NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
D+ N T+ ++ Y + D E+ + + +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADR-------AEIERALAAAYAQDFVDK 454
Query: 982 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
LP G +G LS QR+RL IA L+ + I+ +DE TS LD + R V+
Sbjct: 455 LPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQA 510
Query: 1033 TVD---TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
++ GRT + H+ S +E D + ++ G
Sbjct: 511 ALERLMQGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 18/177 (10%)
Query: 879 LMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-------YPKKQETFA--RISGYCEQN 929
L+G SGAGK++L+ VL + SG++ I+G P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 930 DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989
P++TV E+L+ + P V ++ + +L++ L+ P LS
Sbjct: 91 YNLWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLS 143
Query: 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYISGSIMISG---YPKKQETF 919
V+ P +TA +G SG GK+T++ L R G + G +++ G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 920 A--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLR 976
A R G Q P +++ ++++ A L+L + +E+ + L N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 23/216 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L GV+ + G +L+G SG GK+TL+++++G SG +++ G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPGPDRMV 58
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
+ QN P +TV E+ + A R+ ++ R+ +EE + LV L +A P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1042
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1043 TIHQPSIDIVEAFDELFLLKR-----GGQEIYVGSL 1073
H D+ EA L L R G +G +
Sbjct: 171 VTH----DVDEA---LLLSDRVVMLTNGPAANIGQI 199
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 55/199 (27%)
Query: 851 MMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIM 908
MMR G L+ +N V+ R + +L+G +GAGKTT+ + L G + TG G+I+
Sbjct: 12 MMRFG----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG----GTIL 63
Query: 909 -----ISGYPKKQ-------ETFARISGYCEQNDIHSPNVTVYESLL-----------YS 945
I G P Q TF + + E +TV E+LL +S
Sbjct: 64 LRGQHIEGLPGHQIARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFS 115
Query: 946 AWLRLP----LEVDSPTRKMFIEEVMELVEL-NPLRQALVGLPGVSGLSTEQRKRLTIAV 1000
L+ P E ++ R E + L+E N RQA L+ Q++RL IA
Sbjct: 116 GLLKTPAFRRAESEALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIAR 166
Query: 1001 ELVANPSIIFMDEPTSGLD 1019
+V P I+ +DEP +GL+
Sbjct: 167 CMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L+ V+ RP + ALMG +GAGK+TL+ L G +K SGSI+ G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 922 ISGYCEQNDI---HSP-NVTVYESLLYSAWL-RLPLE---VDSPTRKMFIEEVM---EL- 969
S +N I H N+ + S++ + WL R P + VD KM+ + EL
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ--DKMYRDTKAIFDELD 123
Query: 970 VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 124 IDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068
+R + G +V H+ +I + DE+ +L R GQ I
Sbjct: 177 IRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWI 213
|
Length = 491 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 44/185 (23%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ +L+D++ + G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
Y+ Q D + +TV + +A +G S+ E RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGK-SKAE------ARERA------------ 111
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+L+++GL D +SGG ++RV + +
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRVAIARALATRPKL 151
Query: 349 LFMDE 353
L +DE
Sbjct: 152 LLLDE 156
|
Length = 248 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 57/269 (21%)
Query: 156 LNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRV 212
L + ++ S LK ++ G M LLGP +GK+TL L G L + +
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 213 SGR-VTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSEL 270
G + Y+ + E ++T + Q+ D+ + TV E +AF +G E E+
Sbjct: 62 KGEPIKYDKKSLLEV--RKTVGIVFQNPDDQLFAPTVEEDVAFGP--LNLGLSKE---EV 114
Query: 271 SRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISG 330
+R K A +KA EG E ++ +SG
Sbjct: 115 EKRVKEA-----------LKAVGMEGFE-----------------------NKPPHHLSG 140
Query: 331 GQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSL----RQSIHILKGTTLISLL 386
GQKKRV ++ + + +DE ++GLD QI+ L ++ I I+ T + L
Sbjct: 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL- 199
Query: 387 QPAPETYDLFDDIILISDGQIVYQG-PRE 414
P Y D + ++SDG+I+ +G P+E
Sbjct: 200 --VP-VYA--DKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 73/264 (27%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF---- 226
IL +S I G+ ++G +GK+T+L L D + SG +T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 227 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
VPQ T + T+ + + R + + E
Sbjct: 335 LRRAIGIVPQDTVLFND---------TIAYNIKY-GR-----------PDATAEEV---- 369
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
AAA Q I L DT VG+ L+ +SGG+K+RV
Sbjct: 370 ----------GAAAEAAQIHDF-------IQSLPEGYDTGVGERGLK-LSGGEKQRVAIA 411
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPETY 393
++ L +DE ++ LD+ T I +LR+ + G TTL+ S + A
Sbjct: 412 RTILKNPPILILDEATSALDTHTEQAIQAALRE---VSAGRTTLVIAHRLSTIIDA---- 464
Query: 394 DLFDDIILISDGQIVYQGPREHVL 417
D+II++ +G+IV +G E +L
Sbjct: 465 ---DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 36/208 (17%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL+ ++ +RPG + ++GP SGK+TL LAG+ D + G V + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 230 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
A GE +AF GV ++ + + L+ G +P +D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDR 117
Query: 288 FMKAAATEGQEASVVTDYI-LKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
F D + KI L + D ++ + G SGG+KKR +M V
Sbjct: 118 FD------------FQDLMEEKIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEP 164
Query: 347 QALFMDEISTGLDS---STTFQIVNSLR 371
+ +DE +GLD VNSLR
Sbjct: 165 ELCILDESDSGLDIDALKIVADGVNSLR 192
|
Length = 248 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARIS 923
+S R G + L+G +GAGK+TL+ +AG G SGSI +G P + AR
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHR 71
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
Y Q + V++ L L P + + + EV E + L+ L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK------LG 121
Query: 984 -GVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1034
V+ LS E QR RL AV L NP+ ++ +DEP + LD A + R +
Sbjct: 122 RSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G VV + H + + A D ++LLK+G
Sbjct: 181 QQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 914 KKQET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
K + + G Q P +++E++ Y LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 972 L-----NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
L + L+++ L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 45/182 (24%), Positives = 65/182 (35%), Gaps = 47/182 (25%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH 238
+ G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD-IDVFMKAAATEGQ 297
H+ G+K D ++ G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 298 EASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTG 357
A + L I+GL DT+V R +S GQKKR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 358 LD 359
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 40/279 (14%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL---LALAGKLDSSLRVSGRVTYNGH 221
R LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 222 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+P R + + H+ +M +G + + + +
Sbjct: 67 -----MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTE 110
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
P + + M A E + +L ++GL AD D M +SGGQ++RV
Sbjct: 111 APVLVLGMARAEAEKRAME-----LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARA 160
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+ + + DE+++ LD +++N +R+ T L+ + + D +
Sbjct: 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCF 219
Query: 402 ISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
G+IV QG + + F PK + +FL +V
Sbjct: 220 FDKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 55/253 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
++ +S + G LLGP +GK+T+ + G +G++T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 231 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ Q DN E TVRE L R G +S RE A I
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 155
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+L+ L+ AD V D +SGG K+R+T ++
Sbjct: 156 ---------------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
Q L +DE +TGLD I LR + +G T++ E L D + ++
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERLRSL--LARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 405 GQIVYQGPREHVL 417
G+ + +G R H L
Sbjct: 248 GRKIAEG-RPHAL 259
|
Length = 340 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 61/255 (23%), Positives = 97/255 (38%), Gaps = 57/255 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL+ VS + G +T +LG GKTTLL L G L SG + +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 230 RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
A AY+ Q +TV E L SR PD
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRK---------------IPDEIY 115
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML--RG--ISGGQKKRVTTGEM 341
++F +LK EML RG +SGGQ++++
Sbjct: 116 ELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+V + L +DE + G+ S I +R+ + G ++ + Q +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYV 204
Query: 402 ISDGQIVYQGPREHV 416
+ G++V G + +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 44/231 (19%)
Query: 182 GRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDN 240
G +T ++GP SGK+TLL +AG SGRV NG D+ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEAS 300
+TV + + G+ ++ +E R+ + K E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 301 VVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDS 360
+SGG+++RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 361 STTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411
+ +++ L +H T++ + + L ++ + +G+I QG
Sbjct: 162 ALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 41/169 (24%)
Query: 876 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YPKKQETFARIS-G 924
+TAL+G SG GK+TL+ D++ G K I+G + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 925 YCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL-- 979
Q PN +++YE++ Y L K ++EV+E LR A
Sbjct: 87 MVFQK----PNPFPMSIYENVAYG------LRAQGIKDKKVLDEVVE----RSLRGAALW 132
Query: 980 ------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
+ GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 133 DEVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 23/221 (10%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSI------MISGYPKK 915
++ VS + G + ++G SGAGKTTL ++AG T G ++ + M P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+ R G Q P+ TV ++L + L LP E+ K I M +
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEKA 417
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1034
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 418 EEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSIL 471
Query: 1035 ----DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
+ +T + H +D V + L R G+ + +G
Sbjct: 472 KAREEMEQTFIIVSH--DMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-07
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK----QETF 919
L +S + +PG ++G +G+GK++L +LA + SGSI+I G +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVDISKIGLHDLR 77
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRL---PLEVDSPTRKMFIEEVMELVELNPLR 976
+RIS Q + +L+S +R P S + + +E V L
Sbjct: 78 SRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSDEE---LWQALERVGLKEFV 122
Query: 977 QALV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
++L GL V LS QR+ L +A L+ I+ +DE T+ +D A++ +T+
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 1031 RNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
R TV+ H+ +D + D + +L +G
Sbjct: 183 R-EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGSIMISG---YPKKQE 917
L G+ F +TAL+G SG GK+T + L G I+G++ + G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 918 T--FARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ G Q PN ++YE+++Y LRL D K ++E +E
Sbjct: 81 VVQLRKQVGMVFQQ----PNPFPFSIYENVIYG--LRLAGVKD----KAVLDEAVE---- 126
Query: 973 NPLRQALVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L+QA + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 127 TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
L++V+ ++PG+M + GP SGK+TLL + D S G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
HD + ++ + + +R V + S+ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPDATQQEIE 422
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQKKRVTTGEMMVGPAQ 347
A + ASV D IL L DT VG+ RG+ SGGQK+R++ ++ A+
Sbjct: 423 HVA----RLASVHDD----ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDIIL 401
L +D+ + +D T QI+++LRQ +G T+I S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 402 ISDGQIVYQGPREHVLE 418
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
Y+SQ E TV + + +G G E+L+EL E+A + DPD ++
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLA 117
Query: 290 KAAATEGQEASVVTDY----ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
+ A + + L LG D V +SGG ++RV ++
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEE 171
Query: 346 AQALFMDEISTGLD 359
L +DE + LD
Sbjct: 172 PDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMI-----SGYPKKQETFARISGYCEQ 928
G + A+MG SGAGK+TL++++AG SGSI + +G Q + + + E
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML--FQEN 79
Query: 929 NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988
N ++TV +++ L L + ++ + + + V + L LP L
Sbjct: 80 NLF--AHLTVRQNIGLGLHPGLKL---NAEQQEKVVDAAQQVGIADY---LDRLPE--QL 129
Query: 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1047
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 1048 SIDIVEAFDELFLLKRG 1064
S D ++ ++ +G
Sbjct: 190 S-DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 56/257 (21%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P+R L ++ +RPG L+GP +GK+TL L D SGR+ +G D
Sbjct: 348 PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVD 403
Query: 223 MDEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+ + P R + D + +V E + + +
Sbjct: 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------------------R 438
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
PD D ++AAA A+ ++I L DT +G+ + +SGGQ++R+
Sbjct: 439 PDAT-DEEVEAAA----RAAHAHEFISA---LPEGYDTYLGERGVT-LSGGQRQRIAIAR 489
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPETYD 394
++ A L +DE ++ LD+ + + +L ++KG TTLI + + A
Sbjct: 490 AILKDAPILLLDEATSALDAESEQLVQQALET---LMKGRTTLIIAHRLATVLKA----- 541
Query: 395 LFDDIILISDGQIVYQG 411
D I+++ G+IV QG
Sbjct: 542 --DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFAR 921
+L G+ G + AL+G +GAGK+TLM ++AG SG++ I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 922 ISGY----CEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL-VELNPLR 976
Q + PN++V E++L+ LP S +KM + + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQAS-MQKM-KQLLAALGCQLDLDS 136
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
A L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 50/209 (23%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP--KK 915
E + +L +S + G AL+G SG+GK+TL+ +L G G I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
++ + + Q + + T+ +L
Sbjct: 70 EKALSSLISVLNQR-PYLFDTTLRNNL--------------------------------- 95
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 96 -----GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 1036 TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+T++ H + +E D++ L+ G
Sbjct: 146 KDKTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-07
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 49/267 (18%)
Query: 156 LNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGR 215
+ +V I+P K L+ +S ++ G ++GP SGK+TL + G SG
Sbjct: 319 VENVTIVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGS 374
Query: 216 VTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSR 272
V +G D+ ++ + + Y+ Q D + TV E +A R
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA-------------------R 414
Query: 273 REKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SG 330
+ A DP+ + EA+ + IL L DT++G G SG
Sbjct: 415 FGENA----DPEKII----------EAAKLAGVHELILRLPDGYDTVIGP---GGATLSG 457
Query: 331 GQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAP 390
GQ++R+ + G + + +DE ++ LD + N++ +++ T ++ +P+
Sbjct: 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI-KALKARGITVVVITHRPS- 515
Query: 391 ETYDLFDDIILISDGQIVYQGPREHVL 417
D I+++ DG+I G R+ VL
Sbjct: 516 -LLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-07
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETF 919
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G+ Q+ ++TV++++ + L + + P +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 50/264 (18%)
Query: 160 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYN 219
N+ + +++ I G +L+GP SGKTT + + ++ + SG + +
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFID 61
Query: 220 GHDMDEFVP---QRTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRHEMLSELSRR 273
G D+ E P +R Y+ Q IG MTV E +A + + R
Sbjct: 62 GEDIREQDPVELRRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKW-------PKEKIR 111
Query: 274 EKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQK 333
E+A D +L ++GLD D +SGGQ+
Sbjct: 112 ERA---------------------------DELLALVGLD---PAEFADRYPHELSGGQQ 141
Query: 334 KRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393
+RV + L MDE LD T Q+ ++ + G T++ + E +
Sbjct: 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR-LQQELGKTIVFVTHDIDEAF 200
Query: 394 DLFDDIILISDGQIVYQGPREHVL 417
L D I ++ +G+IV G + +L
Sbjct: 201 RLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 43/251 (17%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+ ++++ I G T ++GP GK+TLL L+ + G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 230 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
A I +Q+ G++TV+E +A H+ L R+E
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGR------YPHQPLFTRWRKEDEE--------- 122
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
A T+ +A+ +T + D+ + +SGGQ++R ++
Sbjct: 123 -----AVTKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ +DE +T LD S ++ L + ++ KG TL ++L + +I + +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 407 IVYQG-PREHV 416
IV QG P+E V
Sbjct: 222 IVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG----------- 911
+L GVS G + +++G SG+GK+T + + + +GSI ++G
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDG 78
Query: 912 --YPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV 966
P + R+ G Q+ ++TV E+++ P+ V ++ IE
Sbjct: 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-----EAPVHVLGVSKAEAIERA 133
Query: 967 MELVELNPLRQALVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+ + A VG+ P + LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 134 EKYL-------AKVGIAEKADAYP--AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
Query: 1020 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046
V++ +++ + GRT+V H+
Sbjct: 185 PELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 49/264 (18%)
Query: 153 EGFLNSVNILPSRKKHL-TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR 211
G + S+ L RK LK +S I G + +GP +GKTT L L+G L +
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 212 VSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
SG V G VP + + + + V G + ++ +L
Sbjct: 75 -SGEVRVAG-----LVPWK------RRKKFLRRIGVV-----------FGQKTQLWWDLP 111
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM-VGDEM---LRG 327
+ + D+ A + LD ++ + + + + +R
Sbjct: 112 VIDSFYLLAAIYDLP---PARFKK---------------RLDELSELLDLEELLDTPVRQ 153
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+S GQ+ R ++ + LF+DE + GLD I N L++ +GTT++
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSH 212
Query: 388 PAPETYDLFDDIILISDGQIVYQG 411
+ L +++I G+++Y G
Sbjct: 213 YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 856 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG ++G
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
|
Length = 272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 42/206 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM-----D 224
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGH++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q N M++ E + + R +G+ + + + + K A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-- 137
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
V D + D+ + G+SGGQ++RV ++
Sbjct: 138 -----------------VKDRL---------HDSAL------GLSGGQQQRVCIARVLAT 165
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSL 370
+ + +DE ++ LD + +I +L
Sbjct: 166 SPKIILLDEPTSALDPISAGKIEETL 191
|
Length = 252 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 68/262 (25%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
ILK +S ++ G ++GP SGK+TL L G SG V +G D+ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDR-- 405
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSEL---SRREKAAGIKPDPDIDV 287
Q HIG + Q V EL + E A + D +
Sbjct: 406 -----EQLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPEK 441
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
++AA + V + IL+ L DT +G+ +SGGQ++R + A+
Sbjct: 442 VIEAA-----RLAGVHELILR---LPQGYDTRIGEGG-ATLSGGQRQR-------IALAR 485
Query: 348 ALF-------MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI-----SLLQPAPETYDL 395
AL+ +DE ++ LDS + ++ + GT ++ S L
Sbjct: 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAI-LAAKARGGTVVVIAHRPSALASV------ 538
Query: 396 FDDIILISDGQIVYQGPREHVL 417
D I+++ DG+I GPRE VL
Sbjct: 539 -DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIH 932
G + G +GAGKTTL+ VLAG SG I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG-----VSG 987
+++ E+L + L P + A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSAL----------------AIVGLAGYEDTLVRQ 137
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-06
Identities = 65/246 (26%), Positives = 97/246 (39%), Gaps = 67/246 (27%)
Query: 830 PFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSG-------AFRPGVLTALMGV 882
PF SI V++P+E LE+++V GV+G RPG + ++G
Sbjct: 63 PFDAISI--------VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGP 108
Query: 883 SGAGKTTLMDVLAGRKT---GGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVY 939
+G GK+T + +LAG G Y P E R G QN Y
Sbjct: 109 NGIGKSTALKILAGELKPNLGRY-------EDPPSWDEVIKRFRGTELQN---------Y 152
Query: 940 ESLLYSAWLR----------LPLEVDSPTRKM--------FIEEVMELVELNPL--RQAL 979
LY LR +P V ++ +EV+E + L + R
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-- 210
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
VS LS + +R+ IA L+ + + F DEP+S LD R R +R + G+
Sbjct: 211 -----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY 265
Query: 1040 VVCTIH 1045
V+ H
Sbjct: 266 VIVVEH 271
|
Length = 591 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L G++ PG + AL+G SG+GK+T+ +L + TGG +++ G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 922 ISGYCEQNDIHSPNVTV-YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
+ + +H V E +L+S +R + EE+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHDFIM 601
Query: 981 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1032 NTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHS 1077
+ RTV+ H+ S VE D++ +LK+G V +G H
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKGS----VVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 852 MRPGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIS 904
+R G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ +
Sbjct: 287 IRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ------- 339
Query: 905 GSIMISGYPKKQETFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPT---- 958
G I G P ++ + + PN ++ L + L V PT
Sbjct: 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 959 -RKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 1017 GLD 1019
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 63/249 (25%)
Query: 181 PGR-MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG---HDMD--EFVP--QRTA 232
P R +T L GP SGKT+L+ +AG GR+ NG D + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 233 AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAA 292
Y+ Q TVR L +
Sbjct: 79 GYVFQDARLFPHYTVRGNLR-----------------------------------YGMWK 103
Query: 293 ATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMD 352
+ Q D ++ +LG++ D G +SGG+K+RV G ++ + L MD
Sbjct: 104 SMRAQ-----FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMD 153
Query: 353 EISTGLDSSTTFQI---VNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409
E LD +I + LR I+I ++ + E L D ++++ +G++
Sbjct: 154 EPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVKA 209
Query: 410 QGPREHVLE 418
GP E V
Sbjct: 210 SGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 173 KDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD--------MD 224
+DVS + PG + ++G SGK+TLL LAG+L G TY +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 225 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
E +R ++ Q+ M V R +G+RH
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
+ AT D++ + V D D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEE-----VEIDPTRIDDLPRAFSGGMQQRLQIAR 161
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD------ 394
+V + +FMDE + GLD S ++++ LR + L +I T+D
Sbjct: 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARL 214
Query: 395 LFDDIILISDGQIVYQGPREHVLE 418
L ++++ G++V G + VL+
Sbjct: 215 LAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 32/194 (16%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYISGSIMISGY--PKKQETFARIS 923
R G + L+G +G GK+T + +LAG+ K ++ + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM--------FIEEVMELVELNPL 975
+ I P Y L+ P V ++ ++E+++ +EL +
Sbjct: 84 EG-DVKVIVKPQ---YVDLI-------PKAVKGKVGELLKKKDERGKLDELVDQLELRHV 132
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 133 LDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 1036 TGRTVVCTIHQPSI 1049
V+ H ++
Sbjct: 188 DDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGSIMISGYPKKQ 916
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 917 ETFARI-SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
E R +G Q P++T E++++ PL V +++ ++ EL+
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELL----- 121
Query: 976 RQALVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
A VGL P S LS Q++R+ IA L P ++ DEPTS LD V++
Sbjct: 122 --AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177
Query: 1029 TVRNTVDTGRTVVCTIHQ 1046
+++ + G T+V H+
Sbjct: 178 VMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 66/191 (34%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISGYPKKQ 916
L ++ +TAL+G SG GK+T + D++ K I G +++ G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 917 ETFARISGYCEQNDI-----------HSPN---VTVYESLLYSA---WLRLPLEVDSPTR 959
+ Y D+ PN +++Y+++ Y ++ ++D
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLD---- 120
Query: 960 KMFIEEVMELVELNPLRQALV-----------GLPGVSGLSTEQRKRLTIAVELVANPSI 1008
E+VE L+ A + L GLS Q++RL IA L P +
Sbjct: 121 --------EIVE-KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEV 167
Query: 1009 IFMDEPTSGLD 1019
+ MDEPTS LD
Sbjct: 168 LLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 25/155 (16%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDI-- 931
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 932 --HS----PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985
S P++++ E++ Y L++ L V RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKM-LGVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
+S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 49/256 (19%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRVSGRVTYNGHD---MD 224
ILKD++ I + ++GP SGK+TLL L + DS ++V G+V Y G D +D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q N +++ + +A+ + G+ + E+ + + G+
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK--- 141
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+V+ + + Q +SGGQ++R+T +
Sbjct: 142 -EVYDRLNSPASQ------------------------------LSGGQQQRLTIARALAL 170
Query: 345 PAQALFMDEISTGLDSSTTFQIVNS--LRQSIHILKGTTLISLLQPAP-ETYDLFDDIIL 401
+ L MDE ++ +D IVNS + + I LK I ++ P + + D +
Sbjct: 171 KPKVLLMDEPTSMID------IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAF 224
Query: 402 ISDGQIVYQGPREHVL 417
+ +G++V G +
Sbjct: 225 LYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 881 GVSGAGKTTLMDVLAGRK--TGG--YISGSIMISGYPKKQETFARISGYCEQNDIHSPNV 936
G SG GK+TL+ ++AG + T G +I M P + R G Q+ P++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-----RGVGMVFQSYALYPHL 90
Query: 937 TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL--RQALVGLPGVSGLSTEQRK 994
+V E++ S L+L + +V E+++L L R+ LS QR+
Sbjct: 91 SVAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQ 140
Query: 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
R+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISG-----YPKK 915
+N S G + +MG+SG+GK+TL+ R I G I++ G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLE---VDSPTRKMFIEEVMELV 970
+ E + Q+ P+ TV E++ + LE V R+ E +ELV
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLENVAF------GLEVQGVPKAEREERALEALELV 152
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 GLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 44/196 (22%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
L+D++ + G + ++LGP GKTTLL +AG + G +T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ-------RLEIA-------------- 109
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
+ LK +GL+ + +SGGQ++RV + Q L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 351 MDEISTGLDSSTTFQI 366
+DE LD+ T Q+
Sbjct: 152 LDEPFGALDAFTREQM 167
|
Length = 255 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD---SSLRVSGRVTYNGHDMDEFVP 228
L D+ ++ G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 229 QRTAAYISQH--DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R + ++ + E TV + +AF + G+ + + EK A K +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI-PKEKA-------EKIAAEKLE---- 129
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
M A E E S +SGGQ +RV ++
Sbjct: 130 --MVGLADEFWEKSPFE------------------------LSGGQMRRVAIAGILAMEP 163
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE + GLD +++ L +SIH G T++ + + D D + L+ G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 407 IVYQGPREHV---LEFFKFMGFECPKRKGVADFLQE 439
I+ G V ++F K PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 66/256 (25%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE----FV 227
LK +S I G T LLGP +GK+TLLL L G L GRV G +++ +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKVMGREVNAENEKWV 77
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+ D+ + TV + +AF G+ E+ RR + A
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---------- 122
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
LK + + D+ +S GQKKRV ++
Sbjct: 123 -------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPD 158
Query: 348 ALFMDEISTGLDSS---TTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL------FDD 398
+ +DE LD T +I++ L +G T+I T+D+ D
Sbjct: 159 VIVLDEPMAYLDPRGQETLMEILDRLHN-----QGKTVIV------ATHDVDLAAEWADQ 207
Query: 399 IILISDGQIVYQGPRE 414
+I++ +G+++ +G +
Sbjct: 208 VIVLKEGRVLAEGDKS 223
|
Length = 274 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 64/245 (26%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRVSGRVTYNGHDMDEFVPQ---RTAA 233
+ G+ L+GP +GKT+LL AL G L SL++ NG ++ E P+ + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 234 YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAA 293
++ Q + + T+R+ + +PD
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG---------------------------NPDAS---DEQL 455
Query: 294 TEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMD 352
+ E + V++++ + GLD T +GD+ G+S GQ +R+ ++ P Q L +D
Sbjct: 456 QQALENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLD 510
Query: 353 EISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDIILISDGQ 406
E + LD+ + ++ +L + + TTL+ L Q +D I ++ DGQ
Sbjct: 511 EPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ--------WDQIWVMQDGQ 560
Query: 407 IVYQG 411
IV QG
Sbjct: 561 IVQQG 565
|
Length = 588 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG----- 911
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G++ G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 912 ----------------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVD 955
YP I G Q + + V R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 956 SPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
+ +EE + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP 913
L+GVS + R G + AL+G +GAGK+TLM +L+G + SG I++ G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 32/208 (15%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-----ISGSIMISG 911
+ DK +L + ++ + +MG SG+GK+TL+ VL R Y + G ++ G
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFG 77
Query: 912 YPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
Q ++ G Q P++++Y+++ Y PL+ K I++++E
Sbjct: 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY------PLKSHGIKEKREIKKIVE 131
Query: 969 LVELNPLRQALVGL---------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LR+ VGL S LS Q++RLTIA L P ++ MDEPTS +D
Sbjct: 132 ----ECLRK--VGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
Query: 1020 ARAAAIVMRTVRNTVDTGRTVVCTIHQP 1047
+ + + + + +V H P
Sbjct: 186 IVNSQAIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 39/218 (17%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYISGSIMISGYPKK 915
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+R+S + + + +L+S +R L+ P K + + E +E+ L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLD---PECKCTDDRLWEALEIAQL 135
Query: 976 RQALVGLPG-VSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
+ + LPG + + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 136 KNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195
Query: 1027 MRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ V T RTVV H+ S I++A D + +L RG
Sbjct: 196 QKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 31/213 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETFAR 921
L G+S + G AL+G +G GK+TL+ +L T + G I+++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 922 ISGYCEQNDIHSPNVT---VYESLLYSAWLR--LPLEVDSPTRKMFIEEVMELVELNPLR 976
I+ Y E + +V V+ L+SA LR L L + + + IE V++ V L L
Sbjct: 404 IADYSEAALRQAISVVSQRVH---LFSATLRDNLLLAAPNASDEALIE-VLQQVGLEKLL 459
Query: 977 QALVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 460 EDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA 519
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+TV+ H+ + +E FD + ++ G
Sbjct: 520 -EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 47/189 (24%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L V +TA +G SG GK+T + D + G + ++G I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 914 KKQ---ETFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
+ E AR+ G Q PN ++YE++ Y P K ++E++
Sbjct: 91 PRLDVVELRARV-GMVFQK----PNPFPKSIYENVAYG-----PRIHGLARSKAELDEIV 140
Query: 968 ELVELNPLRQALVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
E LR+A GL PG +GLS Q++RL IA + +P +I MDEP S
Sbjct: 141 E----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 1018 LDARAAAIV 1026
LD A A V
Sbjct: 194 LDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 68/192 (35%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGSIMISGYPKKQETFA 920
+ G+ F +TAL+G SG+GK+T + L ++G I+ G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLR----------------------LPLEVDSPT 958
DI+ + VYE +R LE
Sbjct: 88 ---------DINRKEINVYE-------MRKHIGMVFQRPNPFAKSIYENITFALERAGVK 131
Query: 959 RKMFIEEVMELVELNPLRQALV-----------GLPGVSGLSTEQRKRLTIAVELVANPS 1007
K ++E++E L+QA + L LS Q++RL IA + P
Sbjct: 132 DKKVLDEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPD 183
Query: 1008 IIFMDEPTSGLD 1019
I+ MDEP S LD
Sbjct: 184 ILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-06
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 25/228 (10%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYISGSIMISGYPKKQ 916
+ + VS R G + + GV+G G++ L++ ++G RK SG I+++G
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLG 324
Query: 917 ETFARIS-----GYCEQNDIH---SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VM 967
R Y ++ ++++ E+L+ + P + I +
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 968 ELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
EL+E +R P LS +++L +A EL P ++ +PT GLD A +
Sbjct: 385 ELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075
+ D G+ V+ I E DE+ L I V GR
Sbjct: 444 ERLLELRDAGKAVLL--------ISEDLDEILEL---SDRIAVIYEGR 480
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 63/224 (28%), Positives = 87/224 (38%), Gaps = 54/224 (24%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG---HDMDE 225
L+IL V +++ G L+G SGK+TLL LAG D S SG V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 226 FVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
R ++ Q I + E + A +G SR SR A
Sbjct: 80 --EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ------SRNGAKA-- 129
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
+L+ LGL D + +SGG+++RV
Sbjct: 130 --------------------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
G LF DE + LD T +I + L S++ GTTLI
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLF-SLNREHGTTLI 201
|
Length = 228 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 41/252 (16%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHD---MDE 225
+L V+ I +T L+GP SGK+TLL +L RVSG V +G D MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 226 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
+R + Q N I +++ E +A + L+ L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
++ A + Q V D LD A + SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 346 AQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
+ L DE + LD T +I + + + K T++ + + + D + + G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 406 QIVYQGPREHVL 417
QIV GP V
Sbjct: 222 QIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIS--GSIMISGYPK 914
L ++ + +TAL+G SG GK+TL+ D++ G + G I G ++
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 915 KQETFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
+I G Q PN ++YE++ Y R+ E + T +E+ ++
Sbjct: 82 VVALRRKI-GMVFQR----PNPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAA 134
Query: 972 L-----NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
L + L + + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 135 LWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 37/189 (19%)
Query: 851 MMRPGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISG 905
++ G L D L ++G+S R G L+G SG+GK+TL L G
Sbjct: 287 PIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFD 346
Query: 906 SIMISGYPKKQETFARISGYCEQNDIH----------SPNVTVYESLLYSAWLRLPLEVD 955
I G +K+ R + SP +TV + + L V
Sbjct: 347 GQDIDGLSRKEMRPLR-------RRMQVVFQDPYGSLSPRMTVGQII------EEGLRVH 393
Query: 956 SPT-----RKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1010
P R + E +E V L+P P S QR+R+ IA L+ P +I
Sbjct: 394 EPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELIL 449
Query: 1011 MDEPTSGLD 1019
+DEPTS LD
Sbjct: 450 LDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYC 926
VS R G A++G +G+GK+TL +LAG SG I+I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLHFGDYSFRSKRI 89
Query: 927 E---QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
Q+ S N + + LRL +++ R+ I E + +V L P
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 51/220 (23%)
Query: 157 NSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSG 214
++N+ K+ L D++ I ++T L+GP GK+T L L L S++++ G
Sbjct: 8 KNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG 64
Query: 215 RVTYNG-----HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSE 269
V +G D+D ++ + Q N M++ + +A+ R G+ + E+
Sbjct: 65 EVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL--- 120
Query: 270 LSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR--- 326
D ++ +K AA + V D++ +
Sbjct: 121 ------------DKIVEWALKKAALWDE----------------------VKDDLKKSAL 146
Query: 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI 366
+SGGQ++R+ + + MDE ++ LD +T +I
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 59/272 (21%)
Query: 156 LNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVS 213
L + N+ K ++ VS ++ G + LLGP +GKTT + G K D S
Sbjct: 1 LRAENLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----S 54
Query: 214 GRVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSE 269
G++ +G D+ + + A Y+ Q + ++TV E + +G LS+
Sbjct: 55 GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG-------LSK 107
Query: 270 LSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329
R EK + +L+ + + +S
Sbjct: 108 KEREEKL---------------------------EELLEEFHITHLRKSKAS-----SLS 135
Query: 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL--- 386
GG+++RV + + L +DE G+D V +++ I ILK I +L
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIA----VQDIQKIIKILKDRG-IGVLITD 190
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVLE 418
ET + D +I +G+++ +G E +
Sbjct: 191 HNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 196 TTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETL 251
+TLL + G L + SG + +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 252 AFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG 311
F R E + L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 312 LDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDE 353
L D + SGGQK+RV ++ + L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 51/209 (24%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL ++S +R G L+ GP GK+TLL +A + + SG + + G D+ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 230 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
+Y +Q G+ TV + L F + + +PDP I
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-------------------NQQPDPAI- 116
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ D L+ L DT++ + + +SGG+K+R++ +
Sbjct: 117 --------------FLDD--LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIH 375
+ L +DEI++ LD S VN + IH
Sbjct: 157 KVLLLDEITSALDESNK-HNVNEI---IH 181
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 48/214 (22%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM-----D 224
+K+V I G++T L+GP GK+T+L +L L + GRV ++G D+ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N + ++ E +AF AR G + L E S R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK 378
+ + MDE + LD +T +I +++H LK
Sbjct: 172 EPEVILMDEPCSALDPISTLKI----EETMHELK 201
|
Length = 269 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 42/184 (22%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L+ +S F +TAL+G SG GK+T + D++ G + + G I++ G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDGENIYD 77
Query: 914 KKQE--TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
+ R G Q P +++E++ Y L V+ K ++ E +E
Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG------LRVNGVKDKAYLAERVE--- 127
Query: 972 LNPLRQALV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
LR A + L GLS Q++RL IA L P ++ MDEP S LD
Sbjct: 128 -RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 1021 RAAA 1024
A
Sbjct: 183 IATQ 186
|
Length = 253 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 33/215 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETFAR 921
L ++ G AL+G SG+GK+T+ ++L T Y G I++ G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 922 ISGYC---EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE------VMELVEL 972
+ QN +H N T+ ++ Y+ + +R+ IEE M+ +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-------TEQYSREQ-IEEAARMAYAMDFIN- 464
Query: 973 NPLRQAL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
+ L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 465 -KMDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + + RT + H+ S +E DE+ +++ G
Sbjct: 523 L-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 876 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISGY----PKKQETFARIS- 923
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV--- 980
G Q P +++Y+++ + + K ++ ++E L++A +
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVE----ESLKKAALWDE 135
Query: 981 -----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 136 VKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 64/270 (23%), Positives = 103/270 (38%), Gaps = 34/270 (12%)
Query: 799 NRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLE 858
R Q + + E A + R H IT + + + P
Sbjct: 357 LRLAEFRQALEAAQMDTEKPARTGR-RIDFDDNADHGITLENL--------SLRTP---- 403
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET 918
D LL+ ++ RPG + G SGAGKT+L+ LAG + SG I P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSAL 458
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
+ Q + P T+ E+L Y P + + V+ V L L +
Sbjct: 459 L-----FLPQRP-YLPQGTLREALCY------PNAAPDFSDA-ELVAVLHKVGLGDLAER 505
Query: 979 LVGL-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
L LS +++RL A L+ P +F+DE TS LD + + ++ +
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PD 564
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067
TV+ H+P++ + +L LL G +
Sbjct: 565 ATVISVGHRPTLWNFHS-RQLELLDDAGGQ 593
|
Length = 604 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 57/253 (22%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE 225
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLS- 70
Query: 226 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
N ++ + L F + H +L + + E
Sbjct: 71 ----------KLSSNERAKLR-NKKLGF------IYQFHHLLPDFTALE----------- 102
Query: 286 DVFM-----KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
+V M K + E +E + +L+ +GL+ + + +SGG+++RV
Sbjct: 103 NVAMPLLIGKKSVKEAKERAYE---MLEKVGLEHRINHRPSE-----LSGGERQRVAIAR 154
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL----- 395
+V + DE + LD++ I + + + ++ T+ + + T+DL
Sbjct: 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE-LNRELNTSFLVV------THDLELAKK 207
Query: 396 FDDIILISDGQIV 408
D ++ + DGQ+
Sbjct: 208 LDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
ILK V+ I+ G + L+GP SGK+TL + G + G + + G D
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 7e-06
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFARISGYCEQNDI 931
G LT ++G G GK++L+ + G + G + S P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 932 HSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVG 981
P N TV E++ + SP K + V + L P Q +G
Sbjct: 86 QKPWLLNATVEENITF----------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1039
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1040 VVCTIHQ 1046
+V H+
Sbjct: 195 LVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 35/198 (17%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-KKQ-E 917
+L +G+S G L + G +GAGKT+L+ +LAG R +G ++ G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRD 70
Query: 918 TFARISGYC-EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
+ + Y Q I +T E+L + L P + ++ L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEA------------------LW 111
Query: 977 QAL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
+AL VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1030 VRNTVDTGRTVVCTIHQP 1047
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYISGSIMISGYPKKQET 918
L+ ++ + + G + AL+G SG+GK+ ++ +L T SG I++ G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 919 F-ARISGYCEQNDIHS--PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R QN + P T+ + + L + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQA---RALILEALEAVGLPDP 115
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1034
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G ++ H + + DE+ ++ G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET 918
D +L GVS +TA++G SG GK+T + L + + + G + E
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEG---RVEF 71
Query: 919 FARISGYCEQNDIH-----------SPNV---TVYESLLYSAWL---RLPLEVDSPTRKM 961
F + + Y + +++ PN+ +VY+++ Y + R LE+D
Sbjct: 72 FNQ-NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD----- 125
Query: 962 FIEEVMELVEL-----NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
+E ++ +L + + ++ + L G Q++RL IA L P ++ MDEP
Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 1017 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIVEAFDELF 1059
GLD A+ V +++ + + T+V H + + F F
Sbjct: 180 GLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 876 LTALMGVSGAGKTTLMDVLAGRKTG-GYISGSIMISGYPKKQETFARIS---GYCEQNDI 931
+TAL+G SG GK+T + I G + I G K + + G Q
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQ-- 87
Query: 932 HSPNV---TVYESLLYSAWL---------RLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
PNV ++YE++ Y+ L L VD + EEV + ++ N L
Sbjct: 88 --PNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNAL---- 141
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 142 -------ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 59/263 (22%), Positives = 94/263 (35%), Gaps = 70/263 (26%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T L +SG +R G + L+GP +GK+TLL +AG SG + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 230 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE--MMVG 344
K + + L LD D + +SGG+ +RV + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 345 P-----AQALFMDEISTGLD---SSTTFQIVNSLRQS--IHILKGTTLISLLQPAPETYD 394
P Q L +DE LD S +++++L Q ++ L L+ A
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA----- 199
Query: 395 LFDDIILISDGQIVYQGPREHVL 417
L+ G+++ G RE VL
Sbjct: 200 --HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 35/243 (14%)
Query: 835 SITFDEIAYSVD--MPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 892
+I FD ++Y+ P E ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEH----------QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 893 VLAG--RKTGGYIS-GSIMISGYPKKQE--TFARISGYCEQNDIHSPNVTVYESLLYSAW 947
+ + T G ++ I I+ K + + G Q ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 948 LRLPLEVDSPTRKMFIEEVME-----LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVEL 1002
+ + KM ++EV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 1003 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ ++
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 1062 KRG 1064
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 59/241 (24%), Positives = 89/241 (36%), Gaps = 61/241 (25%)
Query: 181 PGRMTLLLGPPASGKTTLL---LALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQ 237
G + LLGP +GKTTLL L L +++V+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 238 H----DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAA 293
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADF-------------- 91
Query: 294 TEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDE 353
L+ +GL AD VG+ +SGGQ++RV + L +DE
Sbjct: 92 -------AAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDE 139
Query: 354 ISTGLDSSTTFQIVN---SLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQ 410
TGLD T + L + GT ++ + D ++L+ +G+++
Sbjct: 140 PFTGLDMPTQELLTELFIELAGA-----GTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193
Query: 411 G 411
G
Sbjct: 194 G 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 53/206 (25%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
IL ++S +R G + GP GK+TLL +A L S SG + + G D+ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 230 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD--I 285
+ +Y +Q G+ TV + L F + R+ +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-----IRNR--------------RPDRAAAL 114
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT-TGEMMVG 344
D+ + A + +T+ +SGG+K+R+ +
Sbjct: 115 DLLARFALPDSILTKNITE-----------------------LSGGEKQRIALIRNLQFM 151
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSL 370
P L +DEI++ LD S I +
Sbjct: 152 PK-ILLLDEITSALDESNKRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-----YPKKQETFARISGYCEQ 928
G TA++G +G GK+TL+ L+ T G + + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 929 NDIHSPNVTVYESLLYSAWLRLPL-------EVDSPTRKMFIEEVMELVELNPLRQALVG 981
N ++TV E + + PL + ++ T+ M + L + +
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-------- 140
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 ---VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 51/262 (19%)
Query: 155 FLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSG 214
F+ NI + T++ +++ I+ G M LLGP GKTT+L +AG L+ G
Sbjct: 6 FVVLKNITKRFGSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEG 61
Query: 215 RVTYNGHDM-DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRR 273
++ +G D+ + QR + Q M++ E + + + GV E +R
Sbjct: 62 QIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQR 116
Query: 274 EKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQK 333
K A L+++ L D V D+ ISGGQ+
Sbjct: 117 VKEA-----------------------------LELVDLAGFEDRYV-DQ----ISGGQQ 142
Query: 334 KRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK---GTTLISLLQPAP 390
+RV ++ + L DE + LD++ + S+R+ I L+ T + +
Sbjct: 143 QRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQS 198
Query: 391 ETYDLFDDIILISDGQIVYQGP 412
E + + D +I+++ G+I+ G
Sbjct: 199 EAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 48/250 (19%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM-DEFVP-- 228
L +V+ I G L+G SGK+TL+ L G L + SG++ +G D+ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 229 --QRTAAYISQHDNH-IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
++ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
+ I+GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 346 AQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
+ L +DE + GLD +I+N +++ +H T+I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 406 QIVYQG-PRE 414
+ QG PRE
Sbjct: 222 KCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 44/222 (19%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L V+ G TA +G +G+GK+T+M +L G GS+ + I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP--------- 974
+ DI V L P ++F E V++ V P
Sbjct: 73 STSKNKDIKQIRKKV------------GLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE 120
Query: 975 ---LRQALVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
L + + L G+S LS Q +R+ IA L P I+ +DEPT+GLD +
Sbjct: 121 AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
Query: 1023 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+M + +G T+V H D+ D +++L++G
Sbjct: 181 RKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-05
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 44/208 (21%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ--RTAAYIS 236
+RPG LLG +GKTT L G D+++ SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEG 296
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 297 QEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEIST 356
+E V ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 357 GLDSSTTFQIVNSLRQSIHILKGTTLIS 384
G+D + N++ I + L S
Sbjct: 2100 GMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 50/253 (19%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF----- 226
+ D I G + +++G SGK+T + L ++ + +G++ +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 227 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
V ++ + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
L MDE + LD + + L++ + T++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 405 GQIVYQGPREHVL 417
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG--------- 911
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 912 ----YPKKQETFARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIE 964
P ++ ++ G Q+ P+ TV +++ + P+ V R +
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-----PVLVLGMARAEAEK 125
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 1025 IVMRTVRN-TVDTGRTVVCTIHQ 1046
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-05
Identities = 61/265 (23%), Positives = 100/265 (37%), Gaps = 88/265 (33%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF---- 226
+LK +S I+ G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 227 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
V QR H+ T+R+ L
Sbjct: 412 LRQAISVVSQRV---------HLFSATLRDNLLL-------------------------- 436
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML--------RGISGG 331
AA EA + +L+ +GL+ + D+ L R +SGG
Sbjct: 437 -----------AAPNASDEALIE---VLQQVGLEKLLE---DDKGLNAWLGEGGRQLSGG 479
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE 391
+++R+ ++ A L +DE + GLD+ T QI+ L + + T++ +
Sbjct: 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMI------ 530
Query: 392 TYDL-----FDDIILISDGQIVYQG 411
T+ L FD I ++ +GQI+ QG
Sbjct: 531 THRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 49/247 (19%)
Query: 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYNGHDMDE-FVPQRT 231
D++ ++ G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 232 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKA 291
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 292 AATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFM 351
E EA GL + + + +SGG +RV ++ L
Sbjct: 102 LILEALEAV----------GLPDPEEVL--KKYPFQLSGGMLQRVMIALALLLEPPFLIA 149
Query: 352 DEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL------FDDIILISDG 405
DE +T LD +++ LR + L GT ++ + T+DL D++ ++ DG
Sbjct: 150 DEPTTDLDVVNQARVLKLLR-ELRQLFGTGILLI------THDLGVVARIADEVAVMDDG 202
Query: 406 QIVYQGP 412
+IV +G
Sbjct: 203 RIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 47/159 (29%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
++GVS + + G L+G SG GK+TL ++ G T SG I+ G K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEILFEG---KDITKLS 81
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
E+ + E++E V L + L
Sbjct: 82 KEERRER----------------------------------VLELLEKVGLPE--EFLYR 105
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
P LS QR+R+ IA L NP +I DEP S LD
Sbjct: 106 YP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 74/260 (28%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
HL + D++ + G +LGP +GK+TLL +AG L + SG +T NG D
Sbjct: 13 HLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTP 67
Query: 228 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
P +R + + Q +N +TV + + G+ P ++
Sbjct: 68 PSRRPVSMLFQENNLFSHLTVAQNIGL------------------------GLNPGLKLN 103
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ I + +G++ + G +SGGQ++RV +V
Sbjct: 104 AAQREKLHA----------IARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQ 148
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHIL-------KGTTLI----SL---LQPAPET 392
L +DE + LD +LRQ + L + TL+ SL + AP +
Sbjct: 149 PILLLDEPFSALDP--------ALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200
Query: 393 YDLFDDIILISDGQIVYQGP 412
++++DG+I + GP
Sbjct: 201 -------LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFAR--ISGYCEQN 929
G A++G SGAGK+TL++++AG T SGS+ ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 930 DIHSPNVTVYE--SLLYSAWLRLP----LEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
++ ++TV + L + L+L ++ + R+M IE+++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 66/295 (22%), Positives = 108/295 (36%), Gaps = 93/295 (31%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD----- 222
L L +VS I G ++G SGKTT + L L L +G + + D
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 223 --------MDEFVPQRTAA----YISQHDNHIG-----------EMTVRETLAFSARCQG 259
+++ V Q+T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 260 VGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319
V S+ E ++AA YI +++GLD
Sbjct: 136 V-SKEEAK------KRAA--------------------------KYI-ELVGLDE----- 156
Query: 320 VGDEMLR----GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIH 375
L+ +SGGQK+RV ++ L DE + GLD +I+ ++
Sbjct: 157 ---SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN-LN 212
Query: 376 ILKGTTLISLLQPAPETYDLFDDI-------ILISDGQIVYQGPREHVLEFFKFM 423
+G T+I + T+DL D++ I DG+I+ G +L KF+
Sbjct: 213 -KQGKTIILV------THDL-DNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFL 259
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET 918
D L VS G T+++G +G+GK+T+ ++ G + SG I + +
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDN 77
Query: 919 FARIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDS-PTRKMFIEEVME-LVELN 973
F ++ G QN N V + Y + LE + P +M V E L +++
Sbjct: 78 FEKLRKHIGIVFQN---PDNQFVGSIVKYD--VAFGLENHAVPYDEM-HRRVSEALKQVD 131
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
L +A +SG Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 132 MLERADYEPNALSG---GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV 188
Query: 1034 -VDTGRTVVCTIHQPSIDIVEAF--DELFLLKRG 1064
+ T++ H D+ EA D + ++ +G
Sbjct: 189 KSEHNITIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 41/250 (16%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+L V +R G + L+GP +GKTTLL A+ G L + +G V G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGV--GSRHEMLSELSRREKAAGIKPDPDIDV 287
+A S+ + + T +L+F + V R S +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTWTETD---------- 116
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+AA E + V + D + +SGG+++RV +
Sbjct: 117 --RAAVERAMERTGVAQFA---------------DRPVTSLSGGERQRVLLARALAQATP 159
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L +DE + LD + + + +R+ + G T ++ + D+++L++DG++
Sbjct: 160 VLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRV 217
Query: 408 VYQGPREHVL 417
GP VL
Sbjct: 218 RAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 830 PFKPHSITFDEI-------AYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGV 882
P +PH I D I + V P ++ VS + R G + + G+
Sbjct: 247 PHEPHEIG-DVILEARNLTCWDVINP-----------HRKRVDDVSFSLRRGEILGVAGL 294
Query: 883 SGAGKTTLMDVLAGRKTGGYISGSIMISGYP-----KKQETFARISGYCEQNDIHS--PN 935
GAG+T L+ L G G + G++ I+G P Q A I+ E H P
Sbjct: 295 VGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353
Query: 936 VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL------VELNPLRQALVGLPGVSGLS 989
+ V +++ S + S KM I+ EL ++ ++ A LP + LS
Sbjct: 354 LGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLS 405
Query: 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
+++ +A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 232 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKA 291
+ Q+ + + +TVRE +A + +L +LS+ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 292 AATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFM 351
+ + + ++GL AD G +SGG K+RV + + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 352 DEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
DE LD+ T + L Q I T++ + E L D ++++++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 54/258 (20%), Positives = 91/258 (35%), Gaps = 66/258 (25%)
Query: 175 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTA-- 232
+S +R G + L+GP +GK+TLL +AG L SG + + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 233 -AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKA 291
AY+SQ M V + L
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLH----------------------------------QPD 96
Query: 292 AATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI---SGG--QKKRVTTGEMMVGP- 345
AS + +V + D++ R + SGG Q+ R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 346 ----AQALFMDEISTGLDSSTTFQIVNSLRQSIHIL--KGTTLISLLQPAPETYDLFDDI 399
Q L +DE LD + +L + + L +G ++ T D +
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQ----QAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRV 203
Query: 400 ILISDGQIVYQGPREHVL 417
L+ G+++ G R+ VL
Sbjct: 204 WLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
DT + + + R SGG+++R+ +++ A + +DE + GLD T Q+ L +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL---LSLIFEV 144
Query: 377 LKGTTLISLLQPAPETYDL-----FDDIILISDGQIVYQG 411
LK TLI + T+ L D I+ + +G+I+ QG
Sbjct: 145 LKDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 46/170 (27%)
Query: 874 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YPKK---QETFA 920
G +TAL+G SG GK+T++ D++ G + G ++ G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 921 RISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
RI +Q PN ++YE++ + A + + ++ ELVE LR+
Sbjct: 95 RIGMVFQQ-----PNPFPKSIYENIAFGARI-----------NGYTGDMDELVE-RSLRK 137
Query: 978 ALV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
A V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 AAVWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 55/259 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHD-----MD 224
L D+S ++T L+GP GK+T L L L RV G + +G + +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N + ++ E +A+ R GV + + + R + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
D D + E G+SGGQ++R+ +
Sbjct: 136 ---------------------------WDEVKDRL--HESALGLSGGQQQRLCIARALAV 166
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL----LQPAPETYDL----- 395
+ L MDE ++ LD T +I + IH LK I + +Q A D+
Sbjct: 167 EPEVLLMDEPASALDPIATQKI----EELIHELKARYTIIIVTHNMQQAARVSDVTAFFY 222
Query: 396 FDDIILISDGQIVYQGPRE 414
+I + + ++ PRE
Sbjct: 223 MGKLIEVGPTEQIFTRPRE 241
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 40/223 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YISGSIMISGYPKKQET 918
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ + +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 919 FARISGYCEQNDIHS-----PNVTVYESLLY-----SAWLRLPLEVDSPTRKMFIEEVME 968
A I IH P +T+ E++ + + R+ +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRIDW------KKMYAEADKL 125
Query: 969 LVELNPLR---QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025
L LN LR LVG LS +++ + IA L +I MDEPT L
Sbjct: 126 LARLN-LRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
Query: 1026 VMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068
+ R +R GR +V H+ +I E D++ + R GQ I
Sbjct: 180 LFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YP 913
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 914 KKQE--TFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLP-------LE--VDSPTR 959
KK + R G Q PN ++YE+++Y LRL L+ V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQR----PNPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLR 150
Query: 960 KMFI-EEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
+ +EV + + N GLS Q++RL IA + P ++ +DEPTS L
Sbjct: 151 GAALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199
Query: 1019 DARAAAIV 1026
D + +
Sbjct: 200 DPISTLKI 207
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-SGSIMISGYPKKQETFA 920
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 921 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G Q+ + TVY++ + +PL + + V ++ L
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
P LS +++R+ IA +V P+++ DEPT LD + ++R G T
Sbjct: 132 KNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189
Query: 1040 VVCTIH 1045
V+ H
Sbjct: 190 VLMATH 195
|
Length = 222 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 28/183 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YISGSIMISG---YPKKQ 916
L+G+S F LTAL+G SG GK+T + L R I+G I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 917 ETFA--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+ + G Q P +VY+++ Y L++ K I++ +E
Sbjct: 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYG------LKIAGVKDKELIDQRVE----ES 127
Query: 975 LRQALVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
L+QA + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 1028 RTV 1030
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 877 TALMGVSGAGKTTLMDVLAG--RKTGGYIS--GSIM------ISGYPKKQETFARISGYC 926
TA+ G SGAGKT+L++ ++G R G I G ++ I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 927 EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986
Q+ P+ V +L Y + + ++++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVALLGIEPL---LDRYP--G 127
Query: 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYISGSIMISG---YPKKQE--T 918
VS F +TA++G SG GK+T+ ++ + ++G I++ Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 919 FARISGYCEQNDIHSPNVTVYESLL--YSAWLRLPLE-----VDSPTRKMFI-EEVMELV 970
R G Q P +++Y++++ Y R+ V+S +++ + +EV + +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+ N + LS Q++RL IA + P +I MDEP S LD
Sbjct: 143 KSNAME-----------LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 54/230 (23%)
Query: 843 YSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 902
Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 16 YAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEA 60
Query: 903 ISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESL--------LYSAWLRLPLEV 954
G I I G + P + SL L+S +R L+
Sbjct: 61 EEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD- 103
Query: 955 DSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
P + EE+ AL G LS QR+ L +A L+ P ++ +DE
Sbjct: 104 --PFDEYSDEEIYG---------ALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
T+ +D A++ +T+R T T++ H+ + + +D++ ++ G
Sbjct: 153 TASIDYATDALIQKTIREEF-TNSTILTIAHR--LRTIIDYDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 46/248 (18%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM--------DEFVPQR 230
I G M LLGP SGK+TLL L+G + + G + D +
Sbjct: 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA 86
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSR---HEMLSELSRREKAAGIKPDPDIDV 287
YI Q N + ++V E + A +GS S +R +K ++
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIGA----LGSTPFWRTCFSWFTREQKQRALQA------ 136
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
L +G+ A V +SGGQ++RV ++ A+
Sbjct: 137 -------------------LTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAK 172
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
+ DE LD + ++++LR I+ G T++ L + I+ + G +
Sbjct: 173 VILADEPIASLDPESARIVMDTLR-DINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
Query: 408 VYQGPREH 415
Y G +
Sbjct: 232 FYDGSSQQ 239
|
Length = 262 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTT---LLLALAGKLDSSLRVSGRVTYN 219
P+R L +L+DVS + PG +T L+GP SGK+T LL G+V +
Sbjct: 22 PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLD 74
Query: 220 GHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
G ISQ+++ + ++ VG + + + A G+
Sbjct: 75 GKP------------ISQYEHKY----LHSKVSL------VGQEPVLFARSLQDNIAYGL 112
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG--ISGGQKKRVT 337
+ V E + + +I + L DT VG+ +G +SGGQK+RV
Sbjct: 113 QSCSFECV------KEAAQKAHAHSFISE---LASGYDTEVGE---KGSQLSGGQKQRVA 160
Query: 338 TGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQS 373
++ Q L +DE ++ LD+ + Q+ +L
Sbjct: 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 64/301 (21%), Positives = 111/301 (36%), Gaps = 58/301 (19%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF 226
K + L +VS + G++ ++G +GK+TL+ + L+ SG V +G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERP--TSGSVIVDGQDLTTL 72
Query: 227 V-PQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+ T A I QH N + TV +A
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE---------------- 116
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
+K TE +L ++GL D +SGGQK+RV
Sbjct: 117 --------IKRKVTE----------LLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400
+ + L DE ++ LD +TT I+ L++ I+ G T++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 401 LISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFV 460
+IS+G+++ QG + F PK F++ E Y + + F
Sbjct: 213 VISNGELIEQGTVSEI--------FSHPKTPLAQKFIRSTLHLSIPEDYQE-RLQATPFA 263
Query: 461 T 461
Sbjct: 264 D 264
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 61/277 (22%), Positives = 109/277 (39%), Gaps = 60/277 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF----- 226
+ D S + G + +++G SGK+TL+ L ++ + G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 227 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-------PKAEREERAL------- 146
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
L+++GL+ AD + +SGG ++RV +
Sbjct: 147 --------------------EALELVGLEGYADKYPNE-----LSGGMQQRVGLARALAN 181
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
L MDE + LD ++ + L + LK T++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAIMKD 240
Query: 405 GQIVYQG-PREHVLEFFKFMGFECPKRKGVADFLQEV 440
G+IV G P E +L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 39/173 (22%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS---GSIMISGYP---KK 915
+LN +S + R G + G SG GK+TL+ ++A IS G+++ G K
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA-----SLISPTSGTLLFEGEDISTLK 75
Query: 916 QETFARISGYCEQNDIHSPNV---TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
E + + YC Q +P + TVY++L++ +R P +F++++
Sbjct: 76 PEIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERF--- 124
Query: 973 NPLRQALVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LP ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 125 --------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 59/275 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
ILK ++ I G + ++GP SGK+TL +AG + + G + + G + + P+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHE---MLSELSRREKAAGIKPDPDIDV 287
A H+G LAF + G + L+ S+R+ + DP ++
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP-LEF 126
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
++ + LK++G+D + + + G SGG+KKR +M + ++
Sbjct: 127 L-----------EIINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQ---SIHILKGTT----LISLLQPAPETYDLFDDII 400
+DE +GLD +++L+ I+ L + LI+ Q L D I
Sbjct: 172 LAILDETDSGLD-------IDALKIIAEGINKLMTSENSIILITHYQ------RLLDYIK 218
Query: 401 -----LISDGQIVYQGPREHVLEFFKFMGFECPKR 430
++ +G+I+ G E E K G++ K+
Sbjct: 219 PDYVHVMQNGKIIKTGDAELAKELEKK-GYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 879 LMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY---------PKKQETFARISGYCEQN 929
L+G SGAGK++L+ VL + SG++ I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 930 DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG-- 987
P++TV ++L+ + P V ++ + +L L LR L +
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKL--LERLR-----LKPYADRF 138
Query: 988 ---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198
Query: 1045 HQ 1046
H+
Sbjct: 199 HE 200
|
Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 72/283 (25%), Positives = 109/283 (38%), Gaps = 70/283 (24%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL----DSSLRVSGRVTYNGHDMDEFV 227
L D++ I G + ++G GKT+L+ A+ G+L SS+ + G V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP-DPDID 286
PQ + I TVRE + F GS E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ TE E V ISGGQK+RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
D+ + LD+ Q+ +S + LKG T + L+ L D IIL+S+G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMK--DELKGKTRV-LVTNQLHFLPLMDRIILVSEGM 816
Query: 407 IVYQGPREHVLE----FFKFMGFECPKRKGVADFLQEVTSRKD 445
I +G + + F K M + G D QEV + +
Sbjct: 817 IKEEGTFAELSKSGSLFKKLM-----ENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-ISGSIMISGYP----KK 915
+L+ VS F +T+LMG +G+GKTT + L K GY SG +++ G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL-PLEVDSPTRKMFIEEVMELVELNP 974
F R G Q P +++ +++L A +R L R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1035 DTGRTVVCT 1043
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 60/223 (26%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGH----DMDEFV 227
L D+S + PG + +L+GP +GKTTL+ + GK G V ++G + E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEH- 76
Query: 228 PQRTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREKAA 277
I++ IG +TVRE L EL+
Sbjct: 77 ------RIARAG--IGRKFQKPTVFENLTVRENL-----------------ELA------ 105
Query: 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT 337
+ D + + A + + D +L +GL D + +S GQK+ +
Sbjct: 106 -LNRDKSVFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLE 157
Query: 338 TGEMMVGPAQALFMDEISTGL-DSST--TFQIVNSLRQSIHIL 377
G ++ + L +DE G+ D+ T T +++ SL IL
Sbjct: 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200
|
Length = 249 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 48/200 (24%)
Query: 848 PQEMMRPGVLEDKLVLLNGVSGAF-------------RPGVLTALMGVSGAGKTTLMDVL 894
+++ + LV L G+S +F G L+G SG GKTT++ ++
Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60
Query: 895 AGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHS--------PNVTVYESLLYSA 946
AG +T SG IM+ G + + E +++ P++TV+E++ +
Sbjct: 61 AGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFG- 110
Query: 947 WLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG-----LSTEQRKRLTIAVE 1001
LR+ +K E+ V + LR +V L + LS Q++R+ IA
Sbjct: 111 -LRM--------QKTPAAEITPRV-MEALR--MVQLEEFAQRKPHQLSGGQQQRVAIARA 158
Query: 1002 LVANPSIIFMDEPTSGLDAR 1021
+V P ++ +DE S LD +
Sbjct: 159 VVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 173 KDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTY---NGHDMDEFV-- 227
+DVS + PG + ++G SGKTTLL ++G+L +G VTY +G D +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 228 -PQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+R ++ Q+ M V R +G+RH
Sbjct: 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY--------------- 124
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
+I +A A + E +V D D++ R SGG ++R+
Sbjct: 125 --GNI----RAEAQDWLE--------------EVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF---- 396
+V + +FMDE + GLD S ++++ LR + L +I T+DL
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-------THDLAVARL 217
Query: 397 --DDIILISDGQIVYQGPREHVLE 418
D ++++ GQ+V G + VL+
Sbjct: 218 LADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 66/276 (23%), Positives = 102/276 (36%), Gaps = 56/276 (20%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSG------RVTYNGH 221
T+L VS +T L+GP SGKTT L L D S R SG R +N
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 222 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
D+ EF +R + Q N M++ + + R + R E R G+
Sbjct: 95 DVLEF--RRRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-- 149
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
D D + D R +SGGQ++ +
Sbjct: 150 ------------------------------WDAVKDRL-SDSPFR-LSGGQQQLLCLART 177
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+ + L +DE ++ LD +TT +I +R L T+I + + + D L
Sbjct: 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL---TVIIVTHNLAQAARISDRAAL 234
Query: 402 ISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
DG++V +GP E + F PK A ++
Sbjct: 235 FFDGRLVEEGPTEQL--------FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 16/199 (8%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYISGSIMISGY 912
+L +L VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 913 PKKQETFARIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV 970
++ R GY Q P V+ E + PL R+ EL+
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAE------PLLERGVPREAARARARELL 133
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
+ + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA +V+ +
Sbjct: 134 ARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 1031 RNTVDTGRTVVCTIHQPSI 1049
G ++ H +
Sbjct: 193 AEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
PS ++ + +LK +S I G M ++G SGK+TL+ L G LD SG G D
Sbjct: 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKP--TSGTYRVAGQD 71
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ A +H I + R+ +LS L+ AA
Sbjct: 72 VATLDADALAQLRREHFGFIFQ------------------RYHLLSHLT----AA----- 104
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+++V A E ++ + +L+ LGL+ + +SGGQ++RV+ +
Sbjct: 105 QNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARAL 159
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ Q + DE + LDS + +++ L Q +G T+I ++ P+ + +I I
Sbjct: 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHTVI-IVTHDPQVAAQAERVIEI 216
Query: 403 SDGQIVYQGPREH 415
DG+IV P +
Sbjct: 217 RDGEIVRNPPAQE 229
|
Length = 648 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 895
I F E++YS K +L + +S F G + ++G SGAGK+TL+ ++
Sbjct: 4 IEFKEVSYSSF------------GKEILKD-ISVKFEGGAIYTIVGPSGAGKSTLIKLI- 49
Query: 896 GRKTGGYISGSIMISGYPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP 951
+ GSI+I G K + +I +Q H TV +++ Y L+
Sbjct: 50 -NRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGE 106
Query: 952 LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1011
VD +E + +V LN V LS + +R++IA L NP ++ +
Sbjct: 107 KNVD-------VEYYLSIVGLN----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLL 155
Query: 1012 DEPTSGLDARAAAIVMRTVRN 1032
DEPTS LD + I+ +
Sbjct: 156 DEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 59/229 (25%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL--LALAGKLDSSLRVSGRVTYNGHDM 223
IL D++ I G+M ++G SGK+TLL + L K D SG+V NG +
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-----SGQVYLNGQET 62
Query: 224 DEFVPQR-------TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
++ Y+ Q+ I TV E L +G +++ LS+ +REK
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEENLD-------LGLKYKKLSKKEKREK- 114
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
K L+ +GL++ + + +SGG+++RV
Sbjct: 115 ------------KK--------------EALEKVGLNLKLKQKIYE-----LSGGEQQRV 143
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLI 383
++ P + DE + LD ++++ L + L G T+I
Sbjct: 144 ALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE----LNDEGKTII 188
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 57/246 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T + ++S + + LLGP +GK+TLL + G L + SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW------ 64
Query: 230 RTAAYISQHDNH-IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
++ D H IG + E+ + L+ RE
Sbjct: 65 ------TRKDLHKIGSLI--ESPP-------------LYENLTAREN------------- 90
Query: 289 MKAAAT-EGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+K T G S + D +L I+ L S G K+R+ ++ +
Sbjct: 91 LKVHTTLLGLPDSRI-DEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPK 144
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHIL--KGTTLISLLQPAPETYDLFDDIILISDG 405
L +DE + GLD + LR+ I +G T+I E L D I +IS+G
Sbjct: 145 LLILDEPTNGLDPIG----IQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEG 200
Query: 406 QIVYQG 411
+ YQG
Sbjct: 201 VLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 43/243 (17%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYC 926
VS G + AL+G SG GK+TL+ +LAG + +G IM+ G + + Y
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDG-----VDLSHVPPY- 89
Query: 927 EQNDIHS--------PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
Q I+ P++TV +++ + L+ D + V E++ L +++
Sbjct: 90 -QRPINMMFQSYALFPHMTVEQNIAFG------LKQDKLPKAEIASRVNEMLGLVHMQEF 142
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1037
P LS QR+R+ +A L P ++ +DEP LD + + V + ++ G
Sbjct: 143 AKRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200
Query: 1038 RTVVCTIHQPSIDIVEAFD---ELFLLKRGG-------QEIYVGSLGRHSSHLI---KYF 1084
T V H D EA + ++ RG +EIY R+S+ I F
Sbjct: 201 VTCVMVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVF 256
Query: 1085 EGI 1087
EG+
Sbjct: 257 EGV 259
|
Length = 377 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 57/252 (22%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
++++ S ++PG+ L+G SGK+T+ +AG SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 231 TAAYISQHDNHIG--EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
A ++ D I E TVR+ L PD D+
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTI----------------------PDADLVRA 588
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
K AA S Y D + E +SGGQ++R+ +V
Sbjct: 589 CKDAAIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNPSI 636
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPETYDLFDDIILI 402
L +DE ++ LD T I ++LR+ +G T I S ++ D+II++
Sbjct: 637 LILDEATSALDPETEKIIDDNLRR-----RGCTCIIVAHRLSTIRDC-------DEIIVL 684
Query: 403 SDGQIVYQGPRE 414
G++V +G E
Sbjct: 685 ERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 64/259 (24%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF----V 227
LKDVS + G ++G SGK+TL L G L +G +T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
++ DN TV++ +AF GV R EM+ R A
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA---------- 124
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
L+ +G++ + E R +SGGQK+RV ++
Sbjct: 125 -------------------LRQVGMEDFLN----REPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILK---GTTLISLLQPAPETYDL-----FDDI 399
+ +DE ++ LD +++ ++RQ LK G T++S+ T+DL D +
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ----LKEQKGITVLSI------THDLDEAAQADRV 210
Query: 400 ILISDGQIVYQGPREHVLE 418
I+++ G+I+ +G E + +
Sbjct: 211 IVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 45/202 (22%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-----------SGS 906
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 907 IM---ISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFI 963
IM ++ P+ + F+R+ TV E+L + R F
Sbjct: 77 IMREAVAIVPEGRRVFSRM--------------TVEENLAMGGFF--------AERDQFQ 114
Query: 964 EEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
E + + EL P L + + G +S +++ L I L++ P ++ +DEP+ GL
Sbjct: 115 ERIKWVYELFPRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---- 168
Query: 1023 AAIVMRTVRNTVDTGRTVVCTI 1044
A I+++ + +T++ R TI
Sbjct: 169 APIIIQQIFDTIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Query: 875 VLTALMGVSGAGKTTLM---DVLAGRKTGGYISGSIMISG---YPKKQETFA--RISGYC 926
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 927 EQNDIHSPNVTVYES----LLYSAWLRLPLEVDSPTR-----KMFIEEVMELVELNPLRQ 977
Q P++T+Y++ + + ++ E+D +EV + + P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--- 147
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 148 --------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKE 198
Query: 1038 RTVVCTIHQPS 1048
T+V H P+
Sbjct: 199 YTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISGYPKKQ 916
LN ++ +TAL+G SG GK+T + D++ G K I G+++ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 917 ETF-----ARISGYCEQNDIHSPN---VTVYESLLYSAWL---RLPLEVDSPTRKMFIE- 964
F R G Q +PN +++Y+++ Y + + ++D + +
Sbjct: 79 NNFDILELRRKIGMVFQ----TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKS 134
Query: 965 ----EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
EV + + N L LS Q++RL IA L P++I MDEPTS LD
Sbjct: 135 ALWNEVKDKLNTNAL-----------SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183
Query: 1021 RAAAIVMRTVRNTVDTGRTVVCT 1043
+ + + N ++ ++ T
Sbjct: 184 ISTGKIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 60/261 (22%), Positives = 97/261 (37%), Gaps = 72/261 (27%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
L+DVS I G L GP +GK+TLL + G+ + G++ NGHD + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHD----LSRL 69
Query: 231 TAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
I IG + TV E +A R G R E+ RR
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR---GISGGQKKRVT 337
L ++GL + +SGG+++RV
Sbjct: 122 --------------------------LDLVGL--------KHKARALPSQLSGGEQQRVA 147
Query: 338 TGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397
+V L DE + LD +++I+ L + I+ L GTT++ A +L +
Sbjct: 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRL-GTTVLM----ATHDLELVN 201
Query: 398 D----IILISDGQIVYQGPRE 414
++ + DG++V R
Sbjct: 202 RMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-05
Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 62/198 (31%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L D+S + PG + +++GP +GKTT++ + GK G V + G D
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTD--------- 65
Query: 232 AAYISQHDNH------IG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
++ H IG +TV E L + + + LS EK
Sbjct: 66 ---LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP-RDKSVFASLFFRLSAEEK 121
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
+ +L+ +GL AD + G +S GQK+
Sbjct: 122 DR-------------------------IEEVLETIGLADEADRLAGL-----LSHGQKQW 151
Query: 336 VTTGEMMVGPAQALFMDE 353
+ G +++ + L +DE
Sbjct: 152 LEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 62/229 (27%), Positives = 94/229 (41%), Gaps = 36/229 (15%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKK 915
+ L VS G A++G +G+GK+T+ +L G + SG I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITIS 74
Query: 916 QETFARIS---GYCEQN-DIHSPNVTVYESLLYSAWLRLPLE---VDSPTRKMFIEEVME 968
+E I G QN D TV + + + LE V K I+++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG------LENKKVPPKKMKDIIDDLAK 128
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-- 1026
V + L P LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 129 KVGM---EDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK 183
Query: 1027 -MRTVRNTVDTGRTVVCTIHQPSIDIVEAF--DELFLLKRGGQEIYVGS 1072
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 184 IMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGSIMISGYPKKQE--- 917
L GVS +TAL+G SG GK+T + L R I GS+ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 918 --TFARISGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFI-----EEVM 967
+ G Q SPN ++ E++ Y R ++++ + +
Sbjct: 121 LVELRKRVGMVFQ----SPNPFPKSIRENISYGP--RKHGDINTGLLARLLGRDDKDAED 174
Query: 968 ELVELNPLRQALVGLPGVS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
ELVE LRQA + V+ GLS Q++RL IA L +P +I MDEP S LD
Sbjct: 175 ELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 1020 ARAAA 1024
A +
Sbjct: 233 PIATS 237
|
Length = 305 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1046 QPSI 1049
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 42/206 (20%), Positives = 68/206 (33%), Gaps = 50/206 (24%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ +S + G + GP SGKTTLL LAG +GRV NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 229 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R Y+ ++V E L F S ++ L+R
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQ 372
+DE +T LD + + ++
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 46/249 (18%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
L +S I G ++G +GK+TLL A+AG L + SG++ +G D+ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 230 RTAAYISQ-----HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ A +++ E+T+ E LA + G + + S L+ R +
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAES---RGKKRGLSSALNERRR--------- 124
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
F + A G LGL+ +G +SGGQ++ ++ +
Sbjct: 125 -SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATLH 165
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI---SLLQPAPETYDLFDDIIL 401
P + L +DE + LD T ++ + + K TTL+ ++ D + +I+
Sbjct: 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIM 221
Query: 402 ISDGQIVYQ 410
+ G+IV
Sbjct: 222 LHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 9e-05
Identities = 30/260 (11%), Positives = 76/260 (29%), Gaps = 26/260 (10%)
Query: 1177 NPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQP 1236
L+ I L FG G + + + V+ + V +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1237 VVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMI---GFEWTAA 1293
++ R + + S + F +PY+ V S+ G+++ + G + +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1294 KFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIW 1353
L + L +++ + V SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1354 WRWYYWACPVSWTLYGLVASQFGDIQDRLESGETVEQFLRSFFGFKHDFLGVVAAVVFAF 1413
+ + P+++ + LR + G+ +++
Sbjct: 228 LQGISYINPLTYAI----------------------DALRYVYLGGWRNDGIWISLLILL 265
Query: 1414 PVLFALIFAVGIKVFNFQKR 1433
+ + +G+ + +++
Sbjct: 266 -LFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 9e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012
EV ++K+ I + + L + LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1013 EPTSGLDARAAAIVMRTVRN 1032
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 1e-04
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ++R+ ++ L +DE ++ LD T I+ +LR + KG T+I ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA---LAKGKTVI-VIA 152
Query: 388 PAPETYDLFDDIILISDGQ 406
T D II++ DG+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 56/201 (27%)
Query: 160 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYN 219
N+ +LKD+S I G ++GP +GK+TLL LAG+L +SG V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKVG 382
Query: 220 GHDMDEFVPQRTAAYISQHDNHI-GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
Y QH + + + TV E L+ L G
Sbjct: 383 --------ETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF-------G 427
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
+ + VG +SGG+K R+
Sbjct: 428 FTGED--------------------------------QEKPVGV-----LSGGEKARLLL 450
Query: 339 GEMMVGPAQALFMDEISTGLD 359
++++ P L +DE + LD
Sbjct: 451 AKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 68/256 (26%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE----- 225
+LK ++ +T L+G GK+TL + L+G L G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 226 -FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+ Q+ A + I + +AFS R GV +E++RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG-----ISGGQKKRVTTG 339
V + A T+V + R +S GQKKRV
Sbjct: 117 -----------------VDE-----------ALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLR----QSIHILKGTTLISLLQPAPETYDL 395
+V A+ L +DE + GLD + Q++ +R Q H++ + I L+ Y++
Sbjct: 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEI 202
Query: 396 FDDIILISDGQIVYQG 411
D + ++ GQI+ G
Sbjct: 203 SDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 59/268 (22%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD 224
K+ +L +VS I G LLG GK+TL L G L+ G V++ G D+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKP--AQGTVSFRGQDLY 76
Query: 225 EFVP------QRTAAYISQHDNHIG----EMTVRETLAFSARCQGVGSRHEMLSELSRRE 274
+ +R + Q + MTVR+ + R L E ++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDESEQKA 128
Query: 275 KAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKK 334
+ A +L ++GL ++ D++ R +SGGQ +
Sbjct: 129 RIA---------------------------ELLDMVGLR--SEDA--DKLPRQLSGGQLQ 157
Query: 335 RVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK---GTTLISLLQPAPE 391
R+ + + + +DE + LD I+ LR+ L+ GT + +
Sbjct: 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK----LQQAFGTAYLFITHDLRL 213
Query: 392 TYDLFDDIILISDGQIVYQGPREHVLEF 419
+ ++ GQIV + +L F
Sbjct: 214 VQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 44/215 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM----DE 225
LK ++ I ++T L+GP GK+TLL L L ++++G++T +G D+ D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 226 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI 285
+ + Q N M++ E +A+ R QG+ + + D +
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL---------------DEVV 122
Query: 286 DVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGP 345
+ ++ AA + V D LK G+SGGQ++R+ +
Sbjct: 123 ERSLRGAALWDE----VKDR-LKSHAF--------------GLSGGQQQRLCIARTIAME 163
Query: 346 AQALFMDEISTGLDSSTTFQI---VNSLRQSIHIL 377
+ MDE ++ LD T +I + L+++ I+
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198
|
Length = 249 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 55/275 (20%), Positives = 100/275 (36%), Gaps = 52/275 (18%)
Query: 161 ILPSRKKHL-----TILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVS 213
I+ S HL LK + +T L+GP GK+T L L L + ++
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 214 GRVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLS 268
G V+ G + D ++ + Q N ++ E + + R GV +L
Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKD-KAVLD 122
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328
E A T ++A++ + + E +
Sbjct: 123 E---------------------AVETSLKQAAIWDEVKDHL------------HESALSL 149
Query: 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVN---SLRQSIHILKGTTLISL 385
SGGQ++RV ++ + +DE ++ LD ++ QI N LR I+ T +
Sbjct: 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209
Query: 386 LQPAPETYDLF--DDIILISDGQIVYQGPREHVLE 418
+ F ++I +D + ++ P+E E
Sbjct: 210 ASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 70/266 (26%), Positives = 108/266 (40%), Gaps = 57/266 (21%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHD 222
HL + +S +R G+ L+G SGK+TL LAL + S +R G+ +G
Sbjct: 296 TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQ-DIDGLS 354
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR-HEM-LSELSRREKAAGIK 280
E P R + D + G ++ R T+ + G R HE LS R ++
Sbjct: 355 RKEMRPLRRRMQVVFQDPY-GSLSPRMTVG---QIIEEGLRVHEPKLSAAERDQRVI--- 407
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
EA L+ +GLD E SGGQ++R+
Sbjct: 408 -----------------EA-------LEEVGLDPATRNRYPHEF----SGGQRQRIAIAR 439
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLR--QSIHILKGTTLISLLQPAPETYDL--- 395
++ + + +DE ++ LD S Q+++ LR Q H L IS +DL
Sbjct: 440 ALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL-SYLFIS--------HDLAVV 490
Query: 396 ---FDDIILISDGQIVYQGPREHVLE 418
+I++ DG+IV QGP E V
Sbjct: 491 RALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 876 LTALMGVSGAGKTTLMDVLAGRK---TGGYISGSIMISG---YPKKQETFA--RISGYCE 927
+TAL+G SG GK+T + L + I G +++ G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 928 QNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-----NPLRQAL 979
Q PN +++Y+++ Y R+ D +E ++ L + L+++
Sbjct: 92 QK----PNPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA 145
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+ L G Q++RL IA + P +I MDEPTS LD
Sbjct: 146 LKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM----DEFVPQRTAAY 234
+ G + + GP +GKT+LL LAG L + +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAG-L--ARPDAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 235 ISQHDNHI-GEMTVRETLAFSARCQGVGSRHEMLSELSR 272
+ H I E+T E L F R G G + L++
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 65/251 (25%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR- 230
L +VS I G + L+G +GKTTLL L G ++ SGR+ ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 231 ---TAAYISQHDNHIGEMTVRETLA---FSARCQGVGSRHEMLSEL-----SRREKAAGI 279
A + + MTV E LA F A R + + EL RR + AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
TM SGG+++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399
++ + L +DE S GL QI +++ Q +G T+ + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRG 207
Query: 400 ILISDGQIVYQ 410
++ +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--------AGKLDSSLRVSGRVTYNGHD 222
++K V I + L+GP GK+TLL +++ +R+ GR Y+ D
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS-PD 77
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG-VGSRHEMLSELSRREKAAGIKP 281
+D +R + Q+ N +T+ + +A + G V S+ E+
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL--------------- 122
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
D ++ +K AA + + DY +SGGQ++R+
Sbjct: 123 DERVEWALKKAALWDEVKDRLNDYP-------------------SNLSGGQRQRLVIARA 163
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAP-ETYDLFDDII 400
+ + L MDE + +D T +I L + LK I L+ +P + + D +
Sbjct: 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFE----LKKEYTIVLVTHSPAQAARVSDYVA 219
Query: 401 LISDGQIVYQGPREHVLE 418
+ G+++ GP V E
Sbjct: 220 FLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDM-DEFVP 228
LK VS I +T L+GP GK+T L L D + R+ G V +G D+ + V
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 229 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q N + ++RE +++ R G + + L R +K A D
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDA---EDEL 176
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
++ ++ AA + V D + D L G+SGGQ++R+ +
Sbjct: 177 VERSLRQAALWDE----VNDRL--------------DDNAL-GLSGGQQQRLCIARCLAV 217
Query: 345 PAQALFMDEISTGLDSSTTFQI 366
+ + MDE ++ LD T +I
Sbjct: 218 DPEVILMDEPASALDPIATSKI 239
|
Length = 305 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 30/222 (13%), Positives = 71/222 (31%), Gaps = 6/222 (2%)
Query: 508 LLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFF 567
L+ + ++L+ + + + H + + +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 568 IVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFY---PSWAYALSTWILKIPISYIEVAVWV 624
I++ ++F+G+ + + + L + + ++ + + +
Sbjct: 95 ILMSVLFSGIFSFSSALF-REREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVL 153
Query: 625 FLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFV 684
+ +++G L LLLL L + L + A+ G+ +L L
Sbjct: 154 LVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGF 213
Query: 685 LGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWR 726
L G E + W + +PL YA +A+ WR
Sbjct: 214 LSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGWR 253
|
Length = 286 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 40/172 (23%)
Query: 876 LTALMGVSGAGKTTLM---DVLAGRKTGGYISGSIMISGYPKKQ----------ETFARI 922
+TAL+G SG GK+T + + + G + G I++ +P E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 923 SGYCEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
S ++ PN +++E++ Y L + R+ +EE +E N LR A
Sbjct: 102 SMVFQK-----PNPFPKSIFENVAYG------LRIRGVKRRSILEERVE----NALRNAA 146
Query: 980 V------GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+ L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 34/208 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGSIMISGYPKKQETF 919
L VS G L+G +GAGK+TL+ +LAG I SG++ + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWL--RLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R+S +P +T E++ + L E+D I+E++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELG---- 133
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
+ LP V S+ + RL A+ P I+ +DE + DA R +R + G
Sbjct: 134 DFIDLP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192
Query: 1038 RTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
+TV+ H ++ D +L++G
Sbjct: 193 KTVILVSH--DPSSIKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 36/169 (21%)
Query: 876 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISG---YPK-KQETFARIS- 923
+TA++G SG GK+T + D++ T +G++M G Y K E R
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHT----TGALMFDGEDIYGKFTDEVLLRKKI 122
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWL-------RLPLEVDSPTRKMFI-EEVMELVELNPL 975
G Q P ++++++ Y L +L V+ RK + +EV + ++ N L
Sbjct: 123 GMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL 181
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 46/183 (25%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGSIMISGYPKKQETFARI 922
+ G+ G L+G SG GK+TL+ ++AG + I SG I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 923 SGYCE----------QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
E QN P+++V E++ Y +R + + + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILEL 124
Query: 973 NPL-----RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1025
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1026 VMR 1028
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 54/241 (22%)
Query: 185 TLLLGPPASGKTTLLLALAG--KLDSS-LRVSGRVTYNGHDMDEFVP-QRTAAYISQHDN 240
T + G SGKTTL+ +AG + D + ++GR ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEAS 300
++VR L + G+K E
Sbjct: 86 LFPHLSVRGNLRY------------------------GMK------------RARPSERR 109
Query: 301 VVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDS 360
+ + ++++LG+ + G +SGG+K+RV G ++ + L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 361 STTFQIV---NSLRQSIHILKGTTLIS-LLQPAPETYDLFDDIILISDGQIVYQGPREHV 416
++I+ L I +S LQ E L D ++++ DG++ GP V
Sbjct: 165 PRKYEILPYLERLHAEFGI--PILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAEV 219
Query: 417 L 417
Sbjct: 220 W 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 50/216 (23%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLL--------LALAGKLDSSLRVSGRVTYN-GHD 222
LK +S I + +GP GK+T L L A +L+ +R+ GR Y+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+DE ++ + Q N + ++ E +A+ R GV
Sbjct: 79 VDEL--RKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKD-------------------- 115
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+ F++ E + + + D + L E +SGGQ++R+ M
Sbjct: 116 ---NAFIRQRVEETLKGAALWDEVKDKL-----------KESAFALSGGQQQRLCIARAM 161
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK 378
L MDE ++ LD +T ++ + IH LK
Sbjct: 162 AVSPSVLLMDEPASALDPISTAKV----EELIHELK 193
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1046
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 1047 PSIDIVEAFDELFLLKRG 1064
P + I + D+ L+ G
Sbjct: 229 PEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+LK++S ++ G LLG SGK+TLL L G L G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 43/234 (18%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDMDEFVP 228
IL+ VS I ++T ++GP GK+T L L +L+S +RV GRV + ++ E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 229 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+R + + N + M+V + +A+ GV K G +P
Sbjct: 82 NLNRLRRQVSMVHPKPN-LFPMSVYDNVAY-----GV--------------KIVGWRPKL 121
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
+ID +++A + + I K LD +SGGQ++R+ +
Sbjct: 122 EIDDIVESALKDADLWDEIKHKIHKS-ALD--------------LSGGQQQRLCIARALA 166
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397
+ L MDE GLD + ++ SL QS+ + T++ + + L D
Sbjct: 167 VKPKVLLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 38/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIH 932
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 993 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1044
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1045 HQPSI----DIVEAFDELFLLKRG 1064
+ + FD +L
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 876 LTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPN 935
+TAL+G SG GK+T + L +I G+ + Y + DI+ P
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMND--------LIPGFRHEGHI------YLDGVDIYDPA 76
Query: 936 V---------------------TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
V ++++++ Y LR+ E D + FIEE +E
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDD----EDFIEERVE----ES 126
Query: 975 LRQALVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
L+ A + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 127 LKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 59/189 (31%)
Query: 876 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQ 928
+TA +G SG GK+T + D + K + G + I G
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI---------------- 72
Query: 929 NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM----------------ELVEL 972
D++S + V +L A + + + +P K + V E+VE
Sbjct: 73 -DVYSVDTNV---VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE- 127
Query: 973 NPLRQALVGL---------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
L VGL LS Q++RL IA + P+++ MDEP S LD A
Sbjct: 128 KSLTS--VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT 185
Query: 1024 AIVMRTVRN 1032
++ ++
Sbjct: 186 NVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
+L++VS I PG ++GP SGK+TL + G L SGRV +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDP-- 71
Query: 231 TAAYISQHDNHIG 243
++ +H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 42/202 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHD-----MD 224
LK ++ I ++T L+GP GK+T L L L S+++ G V +G D +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q N M++ + +A+ R G+ + ++ + + K A + D
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-DEV 136
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
D K+A LGL SGGQ++R+ +
Sbjct: 137 KDRLKKSA-----------------LGL----------------SGGQQQRLCIARALAV 163
Query: 345 PAQALFMDEISTGLDSSTTFQI 366
+ L MDE ++ LD +T +I
Sbjct: 164 EPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM-----D 224
L D++ I R+T L+GP GK+TLL L R++G + YNG ++ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N + ++ E +A+ R G ++ + D
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTL---------------DTI 125
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM-V 343
++ +K AA + + D L +SGGQ++R+ + V
Sbjct: 126 VEKSLKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIARTLAV 166
Query: 344 GPAQALFMDEISTGLDSSTTFQIVN 368
P + + MDE + LD T +I +
Sbjct: 167 NP-EVILMDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 58/219 (26%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+L +++ +RPG L+ G +GKT+LL ALAG SGR++ F+PQ
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPADSALLFLPQ 463
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
R Y+ Q T+RE L + P+ D
Sbjct: 464 RP--YLPQG-------TLREALCY---------------------------PNAAPDF-- 485
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG---ISGGQKKRVTTGEMMVGPA 346
+A +V +L +GL A+ + DE R +SGG+++R+ +++
Sbjct: 486 -------SDAELVA--VLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
+ +F+DE ++ LD T ++ L++ L T+IS+
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEE---LPDATVISV 570
|
Length = 604 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 33/202 (16%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG---YPKKQETF 919
+L G++ + G + A+MG +G+GK+TL V+AG + G I+ G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 920 ARISGYCE-QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL--- 975
A + + Q I P V+ + +LRL +++ F L EL+PL
Sbjct: 82 AHLGIFLAFQYPIEIPGVS------NADFLRLAYN----SKRKF----QGLPELDPLEFL 127
Query: 976 -----RQALVGLPGV-------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
+ LVG+ G S ++KR I + + + +DE SGLD A
Sbjct: 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187
Query: 1024 AIVMRTVRNTVDTGRTVVCTIH 1045
I+ + + + +++ H
Sbjct: 188 KIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 52/241 (21%), Positives = 101/241 (41%), Gaps = 50/241 (20%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM---DEFV 227
ILKD+S G + ++GP +GK+TL+ + +D + G + +G D+ D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+R + Q H+ E TV++ + + +G EK ++DV
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG--------------EK--------NVDV 111
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+Y L I+GL+ T ++ +SGG+ +RV+ + +
Sbjct: 112 ----------------EYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L +DE ++ LD ++T +I+ L + T+I + + + D ++ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 408 V 408
V
Sbjct: 211 V 211
|
Length = 241 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 38/204 (18%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
+ DVS + G+ ++GP +GKTTL+ L D + G++ +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 232 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKA 291
N + ++R+++A + G+ +R S RE + + +A
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVYEA 444
Query: 292 AATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFM 351
A +A+ D+ILK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 445 A-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 352 DEISTGLDSSTTFQI---VNSLRQ 372
DE ++ LD T ++ +++LR+
Sbjct: 496 DEATSALDVETEARVKNAIDALRK 519
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 46/179 (25%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YISGSIMISGYPKKQETF 919
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 920 ARIS-GYCEQNDIHS--PNVTVYESLLYSAWLRLPLEV----DSPTRKMFIEEVMELVEL 972
R QN S P V L PL + + R+ +M V
Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKV------GQILEEPLLINTSLSAAERREKALAMMAKV-- 141
Query: 973 NPLRQALVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 1019
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 --------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG 379
V + + G+SGGQ++RV + L +DE ++ LD T + V +L +S+ G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR-REVRALLKSLQAQLG 151
Query: 380 TTLISLLQPAPETYDLFDDIILISDGQ 406
T++ + E L D ++++ DG+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 46/254 (18%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T+L +S G++T L+G SGK+TLL L S G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 230 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSR--REKAAGIKPDPD 284
R AY+ Q MTVRE +A G H L REK
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVAI-----GRYPWHGALGRFGAADREKV-------- 128
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+EA + ++GL A +V +SGG+++R ++
Sbjct: 129 ------------EEA-------ISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQ 164
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
++ L +DE ++ LD + ++ +L + +G T+I++L D ++ +
Sbjct: 165 DSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223
Query: 405 GQIVYQGPREHVLE 418
G+++ QG ++
Sbjct: 224 GEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE 225
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
Query: 226 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAA------GI 279
A E+ ++ L F + H +L + + E A
Sbjct: 76 LSSAAKA-----------ELRNQK-LGF------IYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
KP + E +L +GL+ A+ + +SGG+++RV
Sbjct: 118 KP--------AEINSRALE-------MLAAVGLEHRANHRPSE-----LSGGERQRVAIA 157
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL 395
+V + + DE + LD+ I L ++ L+GT + + T+DL
Sbjct: 158 RALVNNPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVV------THDL 206
|
Length = 233 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 979 LVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
LVGL LS Q++R+ +A L P + DEPT+GLD + ++ N
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 1033 TVDTGRTVVCTIH 1045
G+T++ H
Sbjct: 211 LNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 43/203 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDM-----D 224
+KDVS +T ++GP GK+T+L ++ D S RV+G++ + D+ D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N M++ + + + G +R
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR--------------------- 118
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGL-DVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
EA + + LK + L D D + + M +SGGQ++R+ +
Sbjct: 119 ------------SEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIA 164
Query: 344 GPAQALFMDEISTGLDSSTTFQI 366
+ + MDE ++ LD +T +I
Sbjct: 165 VKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGSIMISGYPKKQETFA 920
LN VS + G +++G +G+GK+T + R G + SG I+I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 921 RIS---GYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
I G QN D TV + + + LE + E V E +EL
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFG------LENKGIPHEEMKERVNEALEL---- 127
Query: 977 QALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
VG+ + LS Q++R+ IA + P II +DE TS LD +++T++
Sbjct: 128 ---VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIK 184
Query: 1032 NTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067
D TV+ H +D V D + ++K G E
Sbjct: 185 GIRDDYQMTVISITH--DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGH-----DMD 224
L DVS I ++T ++GP GK+T L + D + RV G +T+ G D+D
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
+R + Q N + ++ + +A+ + QG D
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDI-----------------DER 156
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
++ ++ AA + V D + GLD +SGGQ++R+ +
Sbjct: 157 VEESLRRAALWDE----VKDQLDSS-GLD--------------LSGGQQQRLCIARAIAP 197
Query: 345 PAQALFMDEISTGLDSSTTFQI 366
+ + MDE ++ LD T +I
Sbjct: 198 DPEVILMDEPASALDPVATSKI 219
|
Length = 285 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 31/161 (19%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+ RI
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVI-------KRNGKLRI 69
Query: 923 SGYCEQN---DIHSPNVTVYESLLYSAWLRLPLEVDSP-TRKMFIEEVMELVELNPLRQA 978
GY Q D P L + +LRL P T+K I ++ V+ L A
Sbjct: 70 -GYVPQKLYLDTTLP-------LTVNRFLRL-----RPGTKKEDILPALKRVQAGHLIDA 116
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 117 ----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 54/260 (20%)
Query: 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHDMD 224
K ++ DVS + G + LLGP +GKTT + G + D SG++ + D+
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDIT 69
Query: 225 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+ + A Y+ Q + ++TV + + V E + + R++
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNI----MA--VLEIREKDLKKAERKEEL--- 120
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
D +L+ + D+ +SGG+++RV
Sbjct: 121 -----------------------DALLEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL--QPAPETYDLFDD 398
+ + + +DE G+D I ++ I LK + L+ ET D+ D
Sbjct: 153 ALAANPKFILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLITDHNVRETLDICDR 208
Query: 399 IILISDGQIVYQGPREHVLE 418
+ISDG+++ +G E ++
Sbjct: 209 AYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 865 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YISGSIMISGYP----KKQ 916
+S + G + G+ G+G+T LM+ L G R G ++G + P KK
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 917 ETFA----RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ R +G+ I + N+ + SL + + E EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 973 --NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
+ + Q ++ LS ++++ I+ L P +I DEPT G+D A A + + +
Sbjct: 399 KCHSVNQ------NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 1031 RNTVDTGRTVV 1041
R D G+ ++
Sbjct: 453 RQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYISGSIMISG-----YPK 914
+ G+S G AL+G SG+GK+ +++ +L + SGSI+ G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 915 KQETF---ARISGYCEQ-----NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV 966
+Q +I ++ N +H+ + E L L R
Sbjct: 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLS---------RAAARARA 135
Query: 967 MELVELNPLRQALVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018
+EL+EL VG+P LS QR+R+ IA+ L P ++ DEPT+ L
Sbjct: 136 LELLEL-------VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1019 D 1019
D
Sbjct: 189 D 189
|
Length = 534 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 50/200 (25%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
L L +++ I G++T+++G GK++LLLA+ G++ + + G+V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSF 70
Query: 229 QRT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ T AY +Q + TV E + F + R++ +++ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQKKRVTTG 339
D D+ F G + T +G+ RGI SGGQ++R+
Sbjct: 122 DIDLLPF-------GDQ-------------------TEIGE---RGINLSGGQRQRICVA 152
Query: 340 EMMVGPAQALFMDEISTGLD 359
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYC 926
+S R G A++G +G+GK+TL +LAG SG ++I +P ++ S
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDYSYRSQRI 89
Query: 927 E---QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
Q+ S N S + LRL +++ R+ I E + V L L P
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHASYYP 147
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+ L+ Q++RL +A L+ P +I DE + LD
Sbjct: 148 HM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 25/210 (11%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET---FA 920
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 921 RISGYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME-LVELNPL--- 975
R G QN D TV + + + +E R+ I+ V E L+ +N L
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFG------MENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 976 -RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
R+ + LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 135 TREP-------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + V +I +D + D + ++K G
Sbjct: 188 EKYQLTVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 36/164 (21%)
Query: 876 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YISGSIMISGYPKKQETFARISGY 925
+TA++G SG GK+T +++++ KT G Y +I Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 926 CEQNDIHSPN---VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG- 981
++ PN ++Y+++ Y ++ K ++E++E LR A +
Sbjct: 111 FQK-----PNPFPKSIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWD 155
Query: 982 ------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-04
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 40/174 (22%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG-----YPKKQ 916
LN VS G + ++G SGAGK+TL+ + R T SG +++ G +K+
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT----SGRVLVDGQDLTALSEKE 76
Query: 917 ETFARIS-GYCEQ--NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VMELVEL 972
AR G Q N + S TV++++ LPLE+ T K I+ V EL+EL
Sbjct: 77 LRKARRQIGMIFQHFNLLSSR--TVFDNV------ALPLELAG-TPKAEIKARVTELLEL 127
Query: 973 NPLRQALVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
VGL P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 128 -------VGLSDKADRYP--AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1035 DTGRTVVCTIHQPSID 1050
+ G TV+ H+PS+
Sbjct: 136 ELGITVISVGHRPSLW 151
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 20/209 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGS-IMISGYPKKQETFARI 922
LN +S + G TAL+G +G+GK+T+ ++ G S I + G +T I
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 923 S---GYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
G QN D TV + + + R V P + +V+ V + +
Sbjct: 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS 139
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1037
+ LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 140 -----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN 194
Query: 1038 RTVVCTIHQPSIDIVEA--FDELFLLKRG 1064
TV+ H DI EA D++ +L G
Sbjct: 195 LTVISITH----DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 877 TALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDIHS 933
T ++G+SG+GK+TL +L G SG I+++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 934 PNV---TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP------- 983
P + ++ E+LL A + +E+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 984 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 328 ISGGQKKRVTTGEMM-VGPAQALFMDEISTGLD---SSTTFQIVNSLRQSIHILKGTTLI 383
+SGGQK+RV ++ + P +F DE ++ LD +I+ LR++ + TLI
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIF-DESTSMLDPKGKREIKKIMVDLRKT----RKKTLI 197
Query: 384 SLLQPAPETYD-----LFDDIILISDGQIVYQGPREHVL---EFFKFMGFECPKRKGVAD 435
S+ T+D L D +I+ S+G+++ QG + +L E + + P ++
Sbjct: 198 SI------THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK 251
Query: 436 FLQEVTSRKDQEQ 448
L+ + ++E+
Sbjct: 252 KLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 17/206 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L ++ + G ++G +G+GK+TL L G R G + S + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 922 ISGYCEQN-DIHSPNVTVYESLLYSAW-LRLP-LEVDSPTRKMFIEEVMELVELNPLRQA 978
+ G QN + TV E L + L LP +E+ RK ++ + + L R
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI----RKR-VDRALAEIGLEKYRHR 132
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRG 1064
T+V H +++ + D + ++ RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 71/283 (25%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH 238
I G + ++G GK++LL AL ++D +V G V G +VPQ+ A+I Q+
Sbjct: 661 IPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGSV--AYVPQQ--AWI-QN 712
Query: 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQE 298
D ++RE + F L+E ++ PD+++ TE E
Sbjct: 713 D------SLRENILFG--KA--------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE 756
Query: 299 ASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGL 358
V +SGGQK+RV+ + A D+ + +
Sbjct: 757 KGV-------------------------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
Query: 359 DSSTTFQIVNSLRQSIHILKGTTLISL---LQPAPETYDLFDDIILISDGQIVYQGPREH 415
D+ I + +LK T I + + P+ D II++S G+I G +
Sbjct: 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV----DVIIVMSGGKISEMGSYQE 847
Query: 416 VLEFFKFMGFECPKRKGV-ADFLQEVTSRKDQ---EQYWVHKE 454
+L+ R G A+FL+ + Q E W
Sbjct: 848 LLQ-----------RDGAFAEFLRTYAPDEQQGHLEDSWTALV 879
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 64/256 (25%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L VS +RPG + LLG +GK+TL+ L+G SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 232 AAY----ISQHDNHIGEMTVRETLAFS---ARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
A + Q + + ++V E + R G+ R M R +A +
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL----- 129
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
L LGLD+ DT+VGD +S Q++ V +
Sbjct: 130 ----------------------LARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSF 162
Query: 345 PAQALFMDEISTGLDSSTT---FQIVNSLRQSIHILKGTT--LIS--LLQPAPETYDLFD 397
A+ L +DE + L T F ++ L+ +G IS L E +++ D
Sbjct: 163 DARVLILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVFEIAD 213
Query: 398 DIILISDGQIVYQGPR 413
I ++ DG++V P
Sbjct: 214 RITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 36/232 (15%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYC 926
VS + G A++G +GAGKTTL+++L ++ G I+I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 927 EQNDIHSPNVTVYESL-LYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ-------- 977
+ + TV++ L++ +R + + EEV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 978 --ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1035
LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 1036 T---GRTVVCTIHQPSI----DIVEAFDELFLLKRGGQEIYVGSLGRHSSHL 1080
RT H+ S D+V D+ L+++G + + GR L
Sbjct: 516 ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 869 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGSIMISGYPKKQETFARISGYC 926
G+ + ++G +G GKTT + +LAG G I + Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 927 EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL--RQALVGLPG 984
TV + LL S + D T F E+ + +++ + R+
Sbjct: 77 ----------TVRD-LLSS------ITKDFYTHPYFKTEIAKPLQIEQILDRE------- 112
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
V LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 985 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1041 VCTIHQPSIDIVEAFDELFLLKR 1063
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R +SGG+K+RV + DE + LD T + N+L +++ G +++ L
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV-KASGISMV-L 224
Query: 386 LQPAPETY-DLFDDIILISDGQIVYQGPREHVLEFFKFM-GFECPKRKGVADFLQEVTSR 443
PE DL D I + +G+I +G + V+ FM G +++ + + +
Sbjct: 225 TSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA--VFMEGVSEVEKECEVEVGEPIIKV 282
Query: 444 KDQEQYWV 451
++ + ++
Sbjct: 283 RNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 42/249 (16%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P+R + +LK ++ + PG + L+GP SGK+T+ L + G+V +G
Sbjct: 489 PNRPD-VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVP 544
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ Q+D+H V VG + S R A G+
Sbjct: 545 ------------LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDT 582
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
PD ++ M AA +A+ D+ I+ DT VG E +SGGQK+R+ +
Sbjct: 583 PDEEI-MAAA-----KAANAHDF---IMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARAL 632
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
V + L +DE ++ LD+ L Q T++ + T + D I+++
Sbjct: 633 VRKPRVLILDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLS-TVERADQILVL 686
Query: 403 SDGQIVYQG 411
G +V G
Sbjct: 687 KKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L+G+S P ++G +GAGK+++++ L + G IMI +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCD--------V 1300
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQALVG 981
+ + + ++ +L+S +R ++ S + E +E + + + + G
Sbjct: 1301 AKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360
Query: 982 L-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
L G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTA 232
DVS I G + LLG GK+TLL LAG + +G++ +G D+ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPI 93
Query: 233 AYISQHDNHIGEMTVRETLAFS------ARCQGVGSRHEMLSELSRREKAAGIKP 281
+ Q MTV + +AF + + +EML L ++ A KP
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG-LVHMQEFAKRKP 147
|
Length = 377 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 42/202 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLL--LALAGKLDSSLRVSGRVTYNGHDM-----D 224
LK+++ I +T ++GP GK+T + L L ++ +++++G + YNG ++ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
++ + Q N + ++ + +A+ R G ++ ++ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKL---QEIVEKS-------- 135
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
+K A D D + + +SGGQ++R+ +
Sbjct: 136 ----LKDVAL-----------------WDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 345 PAQALFMDEISTGLDSSTTFQI 366
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 55/256 (21%), Positives = 90/256 (35%), Gaps = 63/256 (24%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHDMDEFVP 228
LKD+S I G ++G +GK+TLL +AG K SG+V G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTG-------- 88
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+ A I E+T RE + G L+R+E
Sbjct: 89 -KVAPLIELGAGFDPELTGRENIYLRGLILG----------LTRKE-------------- 123
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
+ E E + + D+I D+ ++ S G R+
Sbjct: 124 IDEKVDEIIEFAELGDFI---------------DQPVKTYSSGMYARLAFSVATHVEPDI 168
Query: 349 LFMDE-ISTGLDSSTTFQI--VNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405
L +DE ++ G D+ FQ + L + + K T++ + D I + G
Sbjct: 169 LLLDEVLAVG-DA--AFQEKCLERLNE--LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223
Query: 406 QIVYQGPREHVLEFFK 421
QI +G E V+ ++
Sbjct: 224 QIRMEGSPEEVIPAYE 239
|
Length = 249 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 51/203 (25%)
Query: 847 MPQEM-MRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 899
MPQ++ +R L+ L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 900 GGYISGSIMISGYPKKQETF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPT 958
+G +++ G P R QN P +P
Sbjct: 61 ----AGRVLLDGKPVAPCALRGRKIATIMQN---------------------PRSAFNPL 95
Query: 959 RKM---FIEEVMELVELNPLRQALVGLPGVSGLSTEQR--------------KRLTIAVE 1001
M E + L + L V GL R +R+ IA+
Sbjct: 96 HTMHTHARETCLALGKPADDATLTAALEAV-GLENAARVLKLYPFEMSGGMLQRMMIALA 154
Query: 1002 LVANPSIIFMDEPTSGLDARAAA 1024
L+ I DEPT+ LD A A
Sbjct: 155 LLCEAPFIIADEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 62/229 (27%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916
LE K VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------------------- 708
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLY---SAWLRLPLEVDSPTRK---MFIEE----V 966
Q +I V S+ Y AW+ +++ R F EE +
Sbjct: 709 -----------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARL 752
Query: 967 MELVELNPLRQALVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPT 1015
+ V ++ L L L G GL TE Q+ R+++A + AN + +D+P
Sbjct: 753 ADAVRVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810
Query: 1016 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
S LDA V+ G+T V HQ + +V D + L G
Sbjct: 811 SALDAHVGERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 52/185 (28%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
+L ++ F +TA++G SG GK+TL+ L + +SG AR+
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG--------------ARL 62
Query: 923 SG--YCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM------------- 967
G + +I+SPN+ V + + + +P K + V
Sbjct: 63 EGAVLLDNENIYSPNLDVVN---LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 968 --ELVELNPLRQALV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
E+VE LRQA + GL LS Q++RL IA L P +I MDEP
Sbjct: 120 LDEVVE-KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 1015 TSGLD 1019
S LD
Sbjct: 175 CSALD 179
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 42/211 (19%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMIS-GYPKKQETFAR 921
+L +S +F PG ++G++GAGK+TL+ ++AG +G + G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGI--------K 69
Query: 922 ISGYCEQNDIHSPNVTVYESL------LYSAWLRL---PLEVDSPTRKM--FIEEVMELV 970
+ GY Q P TV E++ + A R + P M + E EL
Sbjct: 70 V-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 971 EL----------NPLRQALVGL---PG---VSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
E+ L A+ L P V+ LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
T+ LDA + A + + ++ G TVV H
Sbjct: 189 TNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 37/223 (16%)
Query: 864 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYISGSIMI 909
++ VS A+R VL AL+G +G+GK+TL +L G G I +
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRL 400
Query: 910 SGYPKKQETFA--RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
G P + + R Q D P V + ++ L + L + + + + +
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFLANVTLGRDISEEQ------VWQAL 450
Query: 968 ELVELNPLRQALV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
E V+L L ++L GL G LS Q++ L +A LV P I+ +DE T+ +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + + V T+V H+ S IVEA D + +L RG
Sbjct: 511 TEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+ + E L+ +SGG K+R+ + ++ + L +DE ++GLD + + +
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPES----RREFWELLRE 140
Query: 377 LK--GTT-LIS--LLQPAPETYDLFDDIILISDGQI 407
LK G T L+S +L+ A L D + ++++G+I
Sbjct: 141 LKKEGKTILLSSHILEEAER---LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 328 ISGGQKKRV-TTGEMMVGPAQALF-MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I G T+I L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID--LGNTVI-L 144
Query: 386 LQPAPETYDLFDDIILI------SDGQIVYQG 411
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 55/230 (23%)
Query: 167 KHLTI-------LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVT 217
K L I ++DV+ I P +T +GP GK+T+L L ++ RV G V
Sbjct: 8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL 67
Query: 218 YNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEM--LSEL 270
+G D +D +RT + Q N M++R+ + + GV ++ ++ L E
Sbjct: 68 LDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK 127
Query: 271 SRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISG 330
S R A E V D + K G G+SG
Sbjct: 128 SLR------------------GANLWNE---VKDRLDKPGG---------------GLSG 151
Query: 331 GQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLRQSIHIL 377
GQ++R+ + L MDE + LD +T I +N L+Q I+
Sbjct: 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIV 201
|
Length = 258 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 62/239 (25%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L V+ +PG + + G +G+GK+TL+ ++ Q F
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI---------------------QRHFDVSE 369
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMF-------------------IE 964
G +DI + + +W R L V S T +F IE
Sbjct: 370 GDIRFHDIPLTKLQL------DSW-RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422
Query: 965 EVMEL--VELNPLR-----QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
V L V + LR VG GV LS Q++R++IA L+ N I+ +D+ S
Sbjct: 423 HVARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSA 481
Query: 1018 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRH 1076
+D R ++ +R + GRTV+ + H+ S + EA E+ +++ G + G H
Sbjct: 482 VDGRTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH----IAQRGNH 533
|
Length = 569 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 49/259 (18%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
H ++K++S +RPG L+G SGK+T LAL ++S G + ++G +
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS----QGEIWFDGQPLHNL- 352
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
R+ L R Q V + S L+ R I + + V
Sbjct: 353 ------------------NRRQLLPVRHRIQVV--FQDPNSSLNPRLNVLQIIEE-GLRV 391
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+ +E V+ +++ +GLD E SGGQ++R+ ++
Sbjct: 392 HQPTLSAAQREQQVIA--VMEEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPS 445
Query: 348 ALFMDEISTGLDSSTTFQIVNSLR--QSIHILKGTTLISLLQPAPETYDLF------DDI 399
+ +DE ++ LD + QI+ L+ Q H L IS +DL +
Sbjct: 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHQL-AYLFIS--------HDLHVVRALCHQV 496
Query: 400 ILISDGQIVYQGPREHVLE 418
I++ G++V QG E V
Sbjct: 497 IVLRQGEVVEQGDCERVFA 515
|
Length = 529 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 50/212 (23%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRVSGRVTYNGHDMDEFVPQ 229
+K + ++T L+GP SGK+T L +L D+ RV+G++ Y G D++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN----- 90
Query: 230 RTAAYISQHDNHIGEM---------TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
R + + HIG + ++ E + F+ GV + +
Sbjct: 91 RKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVL-------------- 136
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
D ++ +K AA Q V D L A T+ SGGQ++R+
Sbjct: 137 -DEIVETSLKQAALWDQ----VKD------DLHKSALTL---------SGGQQQRLCIAR 176
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
+ L MDE ++ LD +T Q+ ++ +
Sbjct: 177 AIAVKPDILLMDEPASALDPISTMQLEETMFE 208
|
Length = 267 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 60/258 (23%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---P 228
L++++ I G+ L+G SGK+T+ L D G + +GHD+ ++
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASL 415
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
+ A +SQ + H+ T+ +A++ SR ++ E+AA
Sbjct: 416 RNQVALVSQ-NVHLFNDTIANNIAYAR--TEQYSREQI-------EEAA----------- 454
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDE--MLRGISGGQKKRVTTGEMMVGPA 346
+ D+I K +D DT++G+ +L SGGQ++R+ ++ +
Sbjct: 455 ---------RMAYAMDFINK---MDNGLDTVIGENGVLL---SGGQRQRIAIARALLRDS 499
Query: 347 QALFMDEISTGLDSSTTFQIVNSL------RQSIHILKGTTLISLLQPAPETYDLFDDII 400
L +DE ++ LD+ + I +L R S+ I +S ++ A D+I+
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVI---AHRLSTIEKA-------DEIL 549
Query: 401 LISDGQIVYQGPREHVLE 418
++ DG+IV +G +L
Sbjct: 550 VVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 55/290 (18%), Positives = 110/290 (37%), Gaps = 58/290 (20%)
Query: 160 NILPSRKKHLT-----ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRV 212
NI+ ++ HL+ L +S +T L+GP GK+T L L D ++++
Sbjct: 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 213 SGRVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEML 267
+G + + G + MD ++ + Q +V + +A+ + GV + +
Sbjct: 63 TGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELID 121
Query: 268 SELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327
+ K A I + ++ A A
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQA---------------------------------- 147
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
SGGQ++R+ + + + +DE ++ LD ++ +I +L + H + LQ
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ 207
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
A + D + +G ++ GP E + F PK++ +D+L
Sbjct: 208 QAGR---ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 46/215 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHD-----M 223
ILK+V+ I +T L+GP GK+T + L L R G + +G D +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
D ++ + Q N + ++ + +A+ R G + + KAA +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAAL---- 132
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
D D + D+ G+SGGQ++R+ +
Sbjct: 133 ----------------------------WDEVKDKL--DKSALGLSGGQQQRLCIARTIA 162
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK 378
+ + MDE + LD +T +I + IH LK
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIED----LIHKLK 193
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 65/321 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRVSGRVTYNGHDMDEFVP 228
L DV+ I G ++G SGK+TLL L G L ++ + RV G + P
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 229 QRTAAYIS-QHDNH-IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
R I Q H + E TV + + F GV SE ++KA
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGV-------SEEDAKQKA---------- 125
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR----GISGGQKKRVTTGEMM 342
+++++GL +E+L +SGGQ +RV ++
Sbjct: 126 -----------------REMIELVGLP--------EELLARSPFELSGGQMRRVAIAGVL 160
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ L +DE + GLD +++ + +H KG T + + + D I+++
Sbjct: 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYK-LHKEKGLTTVLVTHSMEDAARYADQIVVM 219
Query: 403 SDGQIVYQGPREHVL---EFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRF 459
G + QG + + + +G + P+ F + + +E++ + +P
Sbjct: 220 HKGTVFLQGTPREIFADPDELEAIGLDLPE---TVKFKRAL-----EEKFGISFPKP--C 269
Query: 460 VTVKEFADAFQVFYMGQKVGD 480
+T++E A
Sbjct: 270 LTLEELAHEVVQLLRKGGHES 290
|
Length = 290 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 968 ELVELNPLRQALV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
ELVE LRQA + G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 126 ELVE-RSLRQAALWDEVKDKLKQSGLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 60/252 (23%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRV----SGRVTYNGHDMDEF 226
+LK++S I+PG ++G SGK++LLLAL R+ SG + +G D+ +
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-------FRLVELSSGSILIDGVDISKI 71
Query: 227 VPQ--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
R+ + I Q D + T+R L S E+ L + G+K
Sbjct: 72 GLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEY----SDEELWQAL----ERVGLK--- 119
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
+++ + G DT+V +E +S GQ++ + ++
Sbjct: 120 --------------------EFVESLPGGL---DTVV-EEGGENLSVGQRQLLCLARALL 155
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL---LQPAPETYDLFDDII 400
++ L +DE + +D T I ++R++ K T++++ L +T D I+
Sbjct: 156 RKSKILVLDEATASVDPETDALIQKTIREA---FKDCTVLTIAHRL----DTIIDSDRIL 208
Query: 401 LISDGQIVYQGP 412
++ G++V
Sbjct: 209 VLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 47/215 (21%), Positives = 76/215 (35%), Gaps = 50/215 (23%)
Query: 831 FKPHSITFDEIAYSVDMPQEMMRPGVLEDKLV------------LLNGVSGAFRPGVLTA 878
F+P I F+E D D LV L G G +
Sbjct: 321 FRPEEIEFEEKPPRDD---------KARDTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIG 371
Query: 879 LMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNV 936
++G +G GKTT + +LAG + G + +S P+ +
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEED-LKVSYKPQYISP--------------DYDG 416
Query: 937 TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRL 996
TV + L + S F E+++ + L L + V LS + +R+
Sbjct: 417 TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV-----DELSGGELQRV 464
Query: 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
IA L + +DEP++ LD IV + +R
Sbjct: 465 AIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ +++ ++ + +DE + GLD + Q++ L +S+ + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSH 204
Query: 388 PAPETYDLFDDIILISDGQIVYQG-PRE 414
E D++I++ +G IV Q P+E
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-R 1038
VG G S LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +
Sbjct: 1352 VGPYGKS-LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 1039 TVVCTIHQ 1046
T++ H+
Sbjct: 1411 TIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 45/216 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLRVSGRVTYNGHDM-----D 224
+K V+ I +T ++GP GK+T L A+ L S +G + ++G D+ D
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 225 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
E + ++ + Q N + ++ + +A+ R G+ + + L E+ +
Sbjct: 115 EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDK-KQLEEIVEKS---------- 162
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
KAA D +D + D+ G+SGGQ++R+ +
Sbjct: 163 ---LRKAAL------------------WDEVSDRL--DKNALGLSGGQQQRLCVARTLAV 199
Query: 345 PAQALFMDEISTGLDSSTTFQI---VNSLRQSIHIL 377
+ L +DE ++ LD T +I + LR S I+
Sbjct: 200 EPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIM 235
|
Length = 286 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 175 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKL 206
V G++ G +TLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 68/283 (24%), Positives = 102/283 (36%), Gaps = 89/283 (31%)
Query: 176 SGIIRPGRMTLLLGPPASGKTTLLLALAG--KLDSSLRVSGRVTYNGHDMDEFVPQRTAA 233
G I G + +LGP GKTT + LAG K D +V+Y PQ
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYK--------PQ---- 408
Query: 234 YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAA 293
YIS + TV D+ A
Sbjct: 409 YISP----DYDGTVE-------------------------------------DLLRSAIR 427
Query: 294 TEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDE 353
+ + T+ I+K L L+ D + + + +SGG+ +RV + A +DE
Sbjct: 428 SAFGSSYFKTE-IVKPLNLE---DLL--ERPVDELSGGELQRVAIAAALSREADLYLLDE 481
Query: 354 ISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI---SDGQIVYQ 410
S LD + +R+ I + T L+ + DI +I SD IV++
Sbjct: 482 PSAYLDVEQRIIVAKVIRRFIENNEKTALV-----------VDHDIYMIDYVSDRLIVFE 530
Query: 411 G-PREHVLEFFKFMGFECP---KRKGVADFLQE--VTSRKDQE 447
G P +H G P R+G+ FL+ VT R+D E
Sbjct: 531 GEPGKH--------GHASPPMSMREGMNRFLKNLGVTFRRDPE 565
|
Length = 591 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1022
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 66/232 (28%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG-------- 220
L +LK+VS + G L GP +GK+TLL +L + L SGR+
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA---NYLPDSGRILVRHEGAWVDLA 77
Query: 221 ----HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
++ E V ++T Y+SQ I ++ E +A +GV RE A
Sbjct: 78 QASPREVLE-VRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-----------REAA 125
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI-----SGG 331
A A E +L L + E L + SGG
Sbjct: 126 R-------------ARARE----------LLARLNI---------PERLWHLPPATFSGG 153
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
+++RV + L +DE + LD++ +V + ++ +G LI
Sbjct: 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA--RGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+LKD+S I+PG L+ GP +GK++L ALAG SGR+ + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQ 71
Query: 230 R 230
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L +S G ++G +GAGK+TL+ ++AG + T SG + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 922 ISGYCEQNDIHSPNVTVYESL-LYSAWLRL-PLEVDSPTRKMFIEEVMELVELNPLRQAL 979
++ E P +T E++ L L L E+D ++E++E EL
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE-----KVDEIIEFAELGDFID-- 142
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
P V S+ RL +V P I+ +DE + DA + + V+ +T
Sbjct: 143 --QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEG 1086
+V H I + D L+ GQ GS +I +E
Sbjct: 200 IVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPEE----VIPAYEE 240
|
Length = 249 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 66/248 (26%), Positives = 101/248 (40%), Gaps = 75/248 (30%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKL----DSSLRVSGRVTYNGHDMDEFVPQRTAAY 234
+ G + ++G GKT+L+ A+ G+L D+S+ + G V Y VPQ
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAY--------VPQ----- 686
Query: 235 ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAAT 294
+S I TVR+ + F GS + R E+A IDV
Sbjct: 687 VSW----IFNATVRDNILF-------GSPFDP----ERYERA--------IDV------- 716
Query: 295 EGQEASVVTDYILKIL-GLDVCADTMVGDEMLRG--ISGGQKKRVTTGEMMVGPAQALFM 351
++ D L +L G D+ T +G+ RG ISGGQK+RV+ + +
Sbjct: 717 ----TALQHD--LDLLPGGDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDVYIF 764
Query: 352 DEISTGLDSSTTFQIVNS-----LRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
D+ + LD+ Q+ + LR +L L L Q D IIL+ +G
Sbjct: 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ--------VDRIILVHEGM 816
Query: 407 IVYQGPRE 414
I +G E
Sbjct: 817 IKEEGTYE 824
|
Length = 1622 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL 206
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1433 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-258 Score=2378.56 Aligned_cols=1340 Identities=54% Similarity=0.924 Sum_probs=1255.8
Q ss_pred CCcHHhhHHHHHhhCCChhhhhhcccccCCCCccccccCCCChhhhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 000541 40 EDDEEALKWAALEKLPTYNRLKKGILTSSRGEANEVDVCNLGPQERQRIIDKLVKVADVDNEEFLLKLKNRIDRVGISLP 119 (1433)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 119 (1433)
+||||++||||+|||||++| +.+.+... .++|+.++++.+++.++++..+..++|+|+++.++++|.+++ +.|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 44999999999999999998 55543211 279999999999999999999999999999999999999997 899
Q ss_pred ceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 000541 120 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 120 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL 199 (1433)
.++++++++.+++++..| ||+.|...+..+..++..+.. ++.+.+||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999988765 999999999888777665544 45667899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCC
Q 000541 200 LALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279 (1433)
Q Consensus 200 ~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1433)
++|+|.++..++..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|+++++|++ ++.|+|+.+
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998877889999999999999999999999999999999999999999999999998876 666666532
Q ss_pred CCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCC
Q 000541 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLD 359 (1433)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD 359 (1433)
.++|++++++||++|+||+|||+++||+||||||||++|++++++++++||||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 26899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHh
Q 000541 360 SSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQE 439 (1433)
Q Consensus 360 ~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~e 439 (1433)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHH
Q 000541 440 VTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLL 519 (1433)
Q Consensus 440 vts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~ 519 (1433)
+++++++.++|..+..|+.+.+++||.+.|..++.++++..+++.++++.+.++.++..++|.++.|+|++.|+.|++++
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcc
Q 000541 520 MKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFY 599 (1433)
Q Consensus 520 ~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y 599 (1433)
++||.+.++++.++.+++|+++|++|+++.+ ++..++..+.|++||++++.+|++++|+.++++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999985 55667788999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHH
Q 000541 600 PSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFAL 679 (1433)
Q Consensus 600 ~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~ 679 (1433)
++||++++++++++|++++++++|.+|+||++|+.+++++||.+|+++++.+++++++||+++++++++.+|+++|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCcccccCCCC---------------CCchHHHHhhcc
Q 000541 680 LLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNT---------------TEPLGVQVLKSR 744 (1433)
Q Consensus 680 ~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~---------------~~~~G~~~L~~~ 744 (1433)
+++.+++||+|+..+||+||+|++|+||++|+++++++|||++.+|.|.+.++ ..++|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 99999999999999999999999999999999999999999999999984322 356799999999
Q ss_pred Ccc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCccccccCCCcchhhhh
Q 000541 745 GFF-----TDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKA 819 (1433)
Q Consensus 745 ~~~-----~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1433)
++. ...+|+|+++|+++||.++|++.+++++.|+++....+..+..+...+......... .. +.......
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~~s 765 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS---SS--EIEKLDDS 765 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc---cc--cccccccc
Confidence 888 777899999999999999999999999999999988888766443322211100000 00 00000011
Q ss_pred ccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC
Q 000541 820 NHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~ 899 (1433)
...+++++..|+.|..++++||.|.+++|.+++.+| +++++|+||||.++||.++||||+||||||||||+|+||++
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t 842 (1391)
T KOG0065|consen 766 SHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT 842 (1391)
T ss_pred cccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc
Confidence 111356778888899999999999999998887766 67889999999999999999999999999999999999999
Q ss_pred CCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccccc
Q 000541 900 GGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979 (1433)
Q Consensus 900 ~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~ 979 (1433)
+|.++|+|+|||+|+++.+|+|.+|||+|+|.|.+.+||||.|.|+|+||+|.+++.+++.++||+|++.|||.+++|.+
T Consensus 843 ~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~dai 922 (1391)
T KOG0065|consen 843 GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADAL 922 (1391)
T ss_pred cceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcce
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDEL 1058 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p-~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~ 1058 (1433)
||.|| +|||++|||||+||+||++|| .||||||||||||+++|..|++.+|+++++|+||||||||||.++++.||++
T Consensus 923 VG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L 1001 (1391)
T KOG0065|consen 923 VGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDEL 1001 (1391)
T ss_pred ccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH
Confidence 99999 999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCcEEEEEcCCCcChhHHHHHHhhCCCccCCCCCCCcccceEEecCCcccccccccHHHHHHhcHHHHHHHHHHHh
Q 000541 1059 FLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKD 1138 (1433)
Q Consensus 1059 ~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~ 1138 (1433)
++|++||++||+||+|++++++++|||+++|++ |++..|||||||||++.+.+.+.+.||+++|++|++++++++++++
T Consensus 1002 LLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~ 1080 (1391)
T KOG0065|consen 1002 LLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKE 1080 (1391)
T ss_pred HHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 6666699999999999998888899999999999999999999999
Q ss_pred hcCCCCC-CCCCcCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHH
Q 000541 1139 ISKPAPG-SKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMG 1217 (1433)
Q Consensus 1139 ~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g 1217 (1433)
+++++++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||++|+ ++||++|.+|
T Consensus 1081 l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~ 1157 (1391)
T KOG0065|consen 1081 LSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMG 1157 (1391)
T ss_pred HhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHH
Confidence 9999988 78888899999999999999999999999999999999999999999999999999995 6899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhHHHH
Q 000541 1218 SMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLW 1297 (1433)
Q Consensus 1218 ~~f~~~~~~~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~ 1297 (1433)
++|+++++.+..++...+|.+..||.+++||+++|||||.||++|++++|+||.++++++|.+|+|+|+||++++.+|+|
T Consensus 1158 a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~ 1237 (1391)
T KOG0065|consen 1158 AAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFW 1237 (1391)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHH
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCC
Q 000541 1298 YQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGD 1377 (1433)
Q Consensus 1298 ~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~ 1377 (1433)
|+++++++.+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+||||+||++|.++|++..++||
T Consensus 1238 f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d 1317 (1391)
T KOG0065|consen 1238 FLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGD 1317 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC----------CCCcHHHHHHhhhC----CcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000541 1378 IQDRLE----------SGETVEQFLRSFFG----FKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433 (1433)
Q Consensus 1378 ~~~~~~----------~~~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1433 (1433)
.+..|. +|+||++|++.++| |.++.......+.++|.+.+.+++.+++|+.|||||
T Consensus 1318 ~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1318 VEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 998884 35699999999999 999999999999999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-238 Score=2364.16 Aligned_cols=1404 Identities=62% Similarity=1.082 Sum_probs=1267.9
Q ss_pred CcccCC---CC---CCCCcHHhhHHHHHhhCCChhhhhhcccccC-----CCC---ccccccCCCChhhhHHHHHHHHhh
Q 000541 30 GAFSMS---SR---GEEDDEEALKWAALEKLPTYNRLKKGILTSS-----RGE---ANEVDVCNLGPQERQRIIDKLVKV 95 (1433)
Q Consensus 30 ~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1433)
++|++. ++ ..|||||+|+|||+||||||+|+|++++... .|+ ..|+|+++||.++++.++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1470)
T PLN03140 25 DVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKV 104 (1470)
T ss_pred hhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhcc
Confidence 788542 11 3678999999999999999999999999653 122 236999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCCceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeece
Q 000541 96 ADVDNEEFLLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDV 175 (1433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 175 (1433)
.++|+++++.++++|.+++|+++|+++|+|+||+|++++.++++.+||++|.+.+.++.+.+..+...+++.+++||+||
T Consensus 105 ~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~v 184 (1470)
T PLN03140 105 AEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDA 184 (1470)
T ss_pred cchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCC
Confidence 99999999999999999999999999999999999999989999999999999998887665444333444568899999
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 000541 176 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 255 (1433)
Q Consensus 176 s~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 255 (1433)
|+.++|||+++|+||||||||||||+|+|+++++.+++|+|.|||+++++..+++.++||+|+|.|++++||+|||.|++
T Consensus 185 s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999998877789999999999887766788999999999999999999999999
Q ss_pred HhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhH
Q 000541 256 RCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335 (1433)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqR 335 (1433)
+|++.+.+.++..+..++++..++.|+.+++.+|++...++.+.+..++.+|+.+||++|+||.||++++++||||||||
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkR 344 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKR 344 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccccee
Confidence 99887766656666777787777888888888999988888878888999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhH
Q 000541 336 VTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREH 415 (1433)
Q Consensus 336 vsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~ 415 (1433)
|+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||+++
T Consensus 345 Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 345 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH 424 (1470)
T ss_pred eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence 99999999999999999999999999999999999999876677888888999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCccccccccccc
Q 000541 416 VLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAA 495 (1433)
Q Consensus 416 ~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~ 495 (1433)
+.+||+++||+||+++|+|||+++++++++++++|.....|+++.++++|+++|+.++.++++.++++.+.++.+.++..
T Consensus 425 ~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 504 (1470)
T PLN03140 425 ILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAA 504 (1470)
T ss_pred HHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccccc
Confidence 99999999999999999999999999998888888777778888899999999999999888888877776665556655
Q ss_pred cccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHHHHHHHHHHHHH
Q 000541 496 LTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFN 575 (1433)
Q Consensus 496 ~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~il~~~~~ 575 (1433)
...++|..++++|++.|++|++++++||+..+++|+++.+++|+++|++||+++++.....++..+.|++||++++.+++
T Consensus 505 ~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~ 584 (1470)
T PLN03140 505 LVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584 (1470)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 66678999999999999999999999999999999999999999999999999877665667788899999999999999
Q ss_pred HhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHHHHHHHH
Q 000541 576 GMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMAS 655 (1433)
Q Consensus 576 ~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~ 655 (1433)
+++++..++.+||||+|||+.+||++|+|++++++.++|+.++++++|++|+|||+|+++++++||.+++++++++++++
T Consensus 585 ~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~ 664 (1470)
T PLN03140 585 GFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAA 664 (1470)
T ss_pred HHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCccccc-CCCCCC
Q 000541 656 ALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKV-LPNTTE 734 (1433)
Q Consensus 656 ~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~~~~~-~~~~~~ 734 (1433)
++|++++++++++.+|+++++++++++++|+||++++++||+||+|++|+||++|+++++++|||.+.+|.+. +.+...
T Consensus 665 ~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~ 744 (1470)
T PLN03140 665 GIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNST 744 (1470)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888643 223356
Q ss_pred chHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccC--C-----C---C-C
Q 000541 735 PLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDN--R-----T---G-G 803 (1433)
Q Consensus 735 ~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~--~-----~---~-~ 803 (1433)
+.|..+|+.+|+..++.|+|++++++++++++|++++++++++.++....+....++........ . . . .
T Consensus 745 ~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1470)
T PLN03140 745 RLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNN 824 (1470)
T ss_pred ccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccc
Confidence 78999999999999899999999999999999999999999999876665554322111000000 0 0 0 0
Q ss_pred ---cc----ccccC----CCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEe
Q 000541 804 ---TI----QLSTS----GRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFR 872 (1433)
Q Consensus 804 ---~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 872 (1433)
.. ..... .............+.++.+|+.|..++|+||+|.++.+.+++..+...+++++|+|||+.++
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~ 904 (1470)
T PLN03140 825 TREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFR 904 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEE
Confidence 00 00000 00000000011223456678888999999999999988766555555566789999999999
Q ss_pred CCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL 952 (1433)
Q Consensus 873 ~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~ 952 (1433)
|||++|||||||||||||||+|+|+.++++.+|+|.+||++.++..+++.+|||+|+|.+++.+||+|+|.|++.+|+|.
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~ 984 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK 984 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC
Confidence 99999999999999999999999998776789999999998765556778999999999999999999999999998877
Q ss_pred CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 000541 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032 (1433)
Q Consensus 953 ~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~ 1032 (1433)
+.+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+++|+||||||||||||+.++..+++.|++
T Consensus 985 ~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 985 EVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 66666777889999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcChhHHHHHHhhCCCccCCCCCCCcccceEEecCCccc
Q 000541 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQE 1112 (1433)
Q Consensus 1033 ~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~ 1112 (1433)
++++|+|||||+|||+.++++.||++++|.+||+++|+|+.+++++++++||++++|+++||+++||||||||+++.+.+
T Consensus 1065 l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~ 1144 (1470)
T PLN03140 1065 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAE 1144 (1470)
T ss_pred HHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccc
Confidence 99899999999999998889999999999988999999999999999999999998888899999999999999987666
Q ss_pred ccccccHHHHHHhcHHHHHHHHHHHhhcCCCCCCCCCcCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHH
Q 000541 1113 TALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIA 1192 (1433)
Q Consensus 1113 ~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~ 1192 (1433)
...+.||++.|++|++++++++.+++++.++++.++..++++|++|+|+|++.|+||+++++||||.|+.+|+++++++|
T Consensus 1145 ~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~a 1224 (1470)
T PLN03140 1145 VKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAA 1224 (1470)
T ss_pred ccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence 66667999999999999999888888877666666666678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 000541 1193 LAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIF 1272 (1433)
Q Consensus 1193 l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~ 1272 (1433)
+++|++||+++++..+++++++++|++|++++|+++.++++++|.|..||+||+|||++|+|++.+|++|++++|+|+.+
T Consensus 1225 l~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~ 1304 (1470)
T PLN03140 1225 LMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVL 1304 (1470)
T ss_pred HHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhheecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcc
Q 000541 1273 VQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPI 1352 (1433)
Q Consensus 1273 ~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~ 1352 (1433)
+++++|++|+|||+||++++.+||||+++++++.++++++|+++++++|+.++|+++++++++++++||||++|+++||+
T Consensus 1305 ~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~ 1384 (1470)
T PLN03140 1305 IQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK 1384 (1470)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHhCCcccccCC-----CCcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000541 1353 WWRWYYWACPVSWTLYGLVASQFGDIQDRLES-----GETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKV 1427 (1433)
Q Consensus 1353 ~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1427 (1433)
||+|+||+||++|+++|+++|||+|.+..|++ ++++++|+.++|||+++++|++++++++|+++|++++++++|+
T Consensus 1385 ~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~ 1464 (1470)
T PLN03140 1385 WWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRT 1464 (1470)
T ss_pred HHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876542 3578999999999999999999999999999999999999999
Q ss_pred hcccCC
Q 000541 1428 FNFQKR 1433 (1433)
Q Consensus 1428 ~~~~~r 1433 (1433)
+|||||
T Consensus 1465 ~~~q~r 1470 (1470)
T PLN03140 1465 LNFQTR 1470 (1470)
T ss_pred hhcccC
Confidence 999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-188 Score=1892.41 Aligned_cols=1279 Identities=31% Similarity=0.530 Sum_probs=1062.5
Q ss_pred cCChHHHHHHHHHHHhhcCCCCC--ceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeec
Q 000541 97 DVDNEEFLLKLKNRIDRVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKD 174 (1433)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 174 (1433)
+.|++++++.++++.++.+...| +++|+|+||+|++. ..+...+||+.|.+.+........+. ..+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeC
Confidence 35777777765555555555444 89999999999993 44666789999998876654333221 1233456789999
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCCCHHHHH
Q 000541 175 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-LRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETL 251 (1433)
Q Consensus 175 vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~-~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 251 (1433)
||+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++++||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 99999999999999999999999999999997432 125999999999875432 235699999999999999999999
Q ss_pred HHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchh
Q 000541 252 AFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGG 331 (1433)
Q Consensus 252 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGG 331 (1433)
.|+++++.+..+. ....+.+ ..+...+.+++.+||++++||.||++.+++||||
T Consensus 160 ~f~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRP---DGVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCC---CCCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 9998876432110 0011111 0112346789999999999999999999999999
Q ss_pred HhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 000541 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411 (1433)
Q Consensus 332 qrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 411 (1433)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987657788888888899999999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCccccc--
Q 000541 412 PREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKR-- 489 (1433)
Q Consensus 412 ~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~-- 489 (1433)
+++++.+||+++||+||++.|+|||++++++++++ +++...+. ....++++++++|+.++.++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987643 23222111 123578999999999887766655543321110
Q ss_pred -------------cccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 000541 490 -------------KSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSIT 556 (1433)
Q Consensus 490 -------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~ 556 (1433)
+..+.....+.|..++++|++.|++|+++.++||+..++.++++.+++|+++|++||+.+.+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~--- 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS--- 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---
Confidence 0001122345688999999999999999999999999999999999999999999999875432
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcccc
Q 000541 557 DGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPN 636 (1433)
Q Consensus 557 ~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~ 636 (1433)
+...+.|++||++++.++.++.++...+.+|++|+|||..++|++++|++++++.++|+.++.+++|++++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 34567899999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHH
Q 000541 637 VGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIV 716 (1433)
Q Consensus 637 ~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~ 716 (1433)
+++||.+++++++.+.++++++++++++++++.+|+.+++++++++++++||+++.++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccc---CCC---------------------CCCchHHHHhhc-cCcccccchhHHHHHHHHHHHHHHHHHH
Q 000541 717 VNEFLGNSWRKV---LPN---------------------TTEPLGVQVLKS-RGFFTDAYWYWLGLGALAGFILLFNFGF 771 (1433)
Q Consensus 717 ~nef~~~~~~~~---~~~---------------------~~~~~G~~~L~~-~~~~~~~~~~w~~~g~l~g~~i~f~~~~ 771 (1433)
+|||.+..+.|. +.+ .....|.++|+. +++. ..|.|++++++++++++|.+++
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~ 686 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVY 686 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHH
Confidence 999999998884 110 123478899984 4554 4589999999999999999999
Q ss_pred HHHHHhcCCCCCcccccccccccc--------cccCCCCCccccccC--CCcchhhhhccccccCccccCCceeEEEece
Q 000541 772 TLALSFLNPFGKNQAVISQESQSN--------EHDNRTGGTIQLSTS--GRSKAEVKANHHKKRGMVLPFKPHSITFDEI 841 (1433)
Q Consensus 772 ~l~l~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 841 (1433)
++++++.++......+........ +.++...+.++.... .+...+.. ..........+.....++|+||
T Consensus 687 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~nl 765 (1394)
T TIGR00956 687 ILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESD-DVNDEKDMEKESGEDIFHWRNL 765 (1394)
T ss_pred HHHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccc-cccccccccccCCCceEEEEee
Confidence 999999986554433322111000 000000111111100 00000000 0000000000011235899999
Q ss_pred eeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCccCCccccc
Q 000541 842 AYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYPKKQETFA 920 (1433)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~ 920 (1433)
+|.++.+ .+++.+|+|||+.++|||++||||||||||||||++|+|+.+++ +.+|+|.+||++... .++
T Consensus 766 ~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~ 835 (1394)
T TIGR00956 766 TYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQ 835 (1394)
T ss_pred EEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhh
Confidence 9987532 12457999999999999999999999999999999999998644 457999999998753 467
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHH
Q 000541 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAV 1000 (1433)
Q Consensus 921 ~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~ 1000 (1433)
+.+|||+|+|.+++.+||+|+|.|++.+|.|.+.++++++++++++++.++|.+++|+.+|.++ .+|||||||||+||+
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGV 914 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHH
Confidence 8899999999999999999999999999987766667777889999999999999999998765 389999999999999
Q ss_pred HHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcChhH
Q 000541 1001 ELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSH 1079 (1433)
Q Consensus 1001 ~L~~~p~-il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~~~~~ 1079 (1433)
||+.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.++++++
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccch
Confidence 9999997 999999999999999999999999999889999999999998788999999999988899999999988899
Q ss_pred HHHHHhhCCCccCCCCCCCcccceEEecCCcccccccccHHHHHHhcHHHHHHHHHHHhhcCCCCCCC---CCcCCCccc
Q 000541 1080 LIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSK---DLHFATQYA 1156 (1433)
Q Consensus 1080 ~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1156 (1433)
+++||+++ |.++||+++|||||+||+++...+.....||.+.|++|+++++..+.++....+..... +....++|+
T Consensus 995 ~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1394)
T TIGR00956 995 IINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYA 1073 (1394)
T ss_pred HHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccC
Confidence 99999987 55679999999999999998655444456899999999998877666655443321111 111224689
Q ss_pred CcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000541 1157 QSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQP 1236 (1433)
Q Consensus 1157 ~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~ 1236 (1433)
.|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .+++|
T Consensus 1074 ~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~ 1149 (1394)
T TIGR00956 1074 ASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLP 1149 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence 999999999999999999999999999999999999999999999986 47889999999999988877763 45668
Q ss_pred hHHhhhhHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhH-------HHHHHHHHHHHHHH
Q 000541 1237 VVSIERTVF-YRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAK-------FLWYQFFMFFTLLY 1308 (1433)
Q Consensus 1237 ~~~~er~v~-~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~-------f~~~~~~~~~~~~~ 1308 (1433)
.|..||.+| +||+++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+ |++|+++++++.++
T Consensus 1150 ~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~ 1229 (1394)
T TIGR00956 1150 PFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLY 1229 (1394)
T ss_pred hHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHH
Confidence 888888885 9999999999999999999999999999999999999999999988876 99999999999999
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCCcccccCC----
Q 000541 1309 FTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLES---- 1384 (1433)
Q Consensus 1309 ~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~~---- 1384 (1433)
++++|+++++++|+.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.+
T Consensus 1230 ~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~ 1309 (1394)
T TIGR00956 1230 FSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELL 1309 (1394)
T ss_pred HHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877742
Q ss_pred ------CCcHHHHH-------------------------------HhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000541 1385 ------GETVEQFL-------------------------------RSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKV 1427 (1433)
Q Consensus 1385 ------~~~~~~~~-------------------------------~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1427 (1433)
|+||++|+ ...+|++.++.|+|++++++|++++ +++++++.+
T Consensus 1310 ~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~ 1388 (1394)
T TIGR00956 1310 TFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYW 1388 (1394)
T ss_pred eecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhhe
Confidence 33554432 2256888899999999999999988 777777776
Q ss_pred h
Q 000541 1428 F 1428 (1433)
Q Consensus 1428 ~ 1428 (1433)
.
T Consensus 1389 ~ 1389 (1394)
T TIGR00956 1389 L 1389 (1394)
T ss_pred E
Confidence 5
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-95 Score=915.27 Aligned_cols=579 Identities=31% Similarity=0.558 Sum_probs=504.3
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEc
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMIS 910 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~ 910 (1433)
.+..+.|+|+++..+.+.. ..+++|+||||.++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3467999999998764321 3478999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 911 GYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 911 G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
|++...+.+++.+|||+|||.++|++||+|+|.|+|.+|+|.+.++++++++|+++++.|||.+|+|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999998999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||||+||.+|+.||+||||||||||||+.++..+++.||++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 799999
Q ss_pred cCCCcChhHHHHHHhhCCCccCCCCCCCcccceEEecCCc-ccccccccHHHHHHhcHHHH--H-HHHHHHhhcCCCCCC
Q 000541 1071 GSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPS-QETALGIDFADIYKSSELYR--R-NKALIKDISKPAPGS 1146 (1433)
Q Consensus 1071 G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~-~~~~~~~d~~~~~~~s~~~~--~-~~~~~~~~~~~~~~~ 1146 (1433)
|+. +++++||+++| . +||+.+|||||.+|+.+.. ..+. -.+..+.++.-..++ . ..+............
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 997 68999999985 4 5999999999999998843 1110 011111111111000 0 000000011110011
Q ss_pred CCCcCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHH
Q 000541 1147 KDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFL 1226 (1433)
Q Consensus 1147 ~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~ 1226 (1433)
+.. +.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.+.++
T Consensus 326 ~~~--~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 326 KKV--EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ccc--ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHH
Confidence 111 111268999999999999999999999999999999999999999999999764 566679999999999888
Q ss_pred HHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhHHHHHHHHHHHHH
Q 000541 1227 GVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTL 1306 (1433)
Q Consensus 1227 ~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~ 1306 (1433)
.+..+...++.|+.||.+|.||+.+|+|+..+|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 88888878899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCCcccccC---
Q 000541 1307 LYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLE--- 1383 (1433)
Q Consensus 1307 ~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~--- 1383 (1433)
+.++++|++++++.||...|..+++++...+++|+||+++.++||+||+|++|+|+++|+++|++.|||++....|.
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~ 560 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSG 560 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997333332
Q ss_pred ---CCCcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000541 1384 ---SGETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQK 1432 (1433)
Q Consensus 1384 ---~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1432 (1433)
+..+..+++. .++++.++.|.++.++++|.++|++++++++++....+
T Consensus 561 ~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 561 NLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred CCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1234556555 67999999999999999999999999999999865544
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-94 Score=912.88 Aligned_cols=580 Identities=24% Similarity=0.400 Sum_probs=486.1
Q ss_pred CceeEEEeceeeEeecCccc----------------cCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhc
Q 000541 832 KPHSITFDEIAYSVDMPQEM----------------MRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~ 895 (1433)
.+.+++|.|++|.++..... ++.....+++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35789999999998654210 00011224567999999999999999999999999999999999
Q ss_pred CCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc
Q 000541 896 GRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975 (1433)
Q Consensus 896 g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~ 975 (1433)
|+.+++..+|+|.+||++.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.+++++.++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9976544689999999876532 345689999999999999999999999988877655566667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHh
Q 000541 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF 1055 (1433)
Q Consensus 976 ~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~f 1055 (1433)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999999889999999999998889999
Q ss_pred cceeEEecCcEEEEEcCCCcChhHHHHHHhhCCCccCCCCCCCcccceEEecCCccccc---------ccccHHHHHHhc
Q 000541 1056 DELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQETA---------LGIDFADIYKSS 1126 (1433)
Q Consensus 1056 d~~~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~---------~~~d~~~~~~~s 1126 (1433)
|++++|.+ |+++|.|+. +++++||+++| . +||+++|||||++|+++...+.. ......+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 899999997 68999999995 3 69999999999999987532110 001123344321
Q ss_pred HHHHHHHHHHHhh--cC-CCC-----CCCCC-cCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHH
Q 000541 1127 ELYRRNKALIKDI--SK-PAP-----GSKDL-HFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGT 1197 (1433)
Q Consensus 1127 ~~~~~~~~~~~~~--~~-~~~-----~~~~~-~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1197 (1433)
. .++.++..+.. .. +.. ..+.. .....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 00000 011235578999999999999988 99999999999999999999999
Q ss_pred HhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 000541 1198 MFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVT 1277 (1433)
Q Consensus 1198 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~ 1277 (1433)
+||+++ ..+++++.|++|++++++++.+++.+++.|+.||+||+||+++|+|++.+|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999975 467899999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhhheecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhh
Q 000541 1278 YGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWY 1357 (1433)
Q Consensus 1278 ~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 1357 (1433)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+.++|+.++++++.++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhcHHHHHHHHHHHHHhCCccc-----ccCCC-----CcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000541 1358 YWACPVSWTLYGLVASQFGDIQD-----RLESG-----ETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKV 1427 (1433)
Q Consensus 1358 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1427 (1433)
+|+||++|++++++.|||++... .|+.. ..| .++. ..++++...|.++++|++|+++|+++++++|++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987542 45321 112 2222 234445568999999999999999999999999
Q ss_pred hcc
Q 000541 1428 FNF 1430 (1433)
Q Consensus 1428 ~~~ 1430 (1433)
+||
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 886
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=916.43 Aligned_cols=565 Identities=29% Similarity=0.485 Sum_probs=500.3
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYPKKQETFARISGYCEQNDIHSPNVT 937 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 937 (1433)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998765667788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000541 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~-~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTs 1016 (1433)
|+|||.|++.++.|...+.+++++.++++++.+||.+++|+.+|+++ .++|||||||||+||+||+++|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999988777777788889999999999999999999764 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcChhHHHHHHhhCCCccCCCCC
Q 000541 1017 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDG 1096 (1433)
Q Consensus 1017 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~ 1096 (1433)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|+. +++.+||+++| . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 9999999999999999998899999999999989999999999998 5899999997 67999999985 3 69999
Q ss_pred CCcccceEEecCCcccccc-----cccHHHHHHhcHHHHHHHHHHHhhcCCCC---CCCCCcCCCcccCcHHHHHHHHHH
Q 000541 1097 YNPATWMLEVTAPSQETAL-----GIDFADIYKSSELYRRNKALIKDISKPAP---GSKDLHFATQYAQSFFTQCMACLW 1168 (1433)
Q Consensus 1097 ~npad~~l~v~~~~~~~~~-----~~d~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~ 1168 (1433)
.|||||++|+++...+... ..++.+.|++|+.+++..+.......+.+ ........++|..+|+.|++.|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 9999999999875432211 13456677777766554443332211111 111111234678899999999999
Q ss_pred HhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHH
Q 000541 1169 KQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRE 1248 (1433)
Q Consensus 1169 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~RE 1248 (1433)
|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++....+.++.||.+|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 46788999999999999998888778889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHH
Q 000541 1249 RAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGI 1328 (1433)
Q Consensus 1249 ~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1328 (1433)
+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCCccc-ccCCC------CcHHHHHHhhhCCccc
Q 000541 1329 VAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQD-RLESG------ETVEQFLRSFFGFKHD 1401 (1433)
Q Consensus 1329 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~-~~~~~------~~~~~~~~~~~g~~~~ 1401 (1433)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|..+ +..++++.+.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998764 56421 1114666678999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000541 1402 FLGVVAAVVFAFPVLFALIFAVGIKVFNFQKR 1433 (1433)
Q Consensus 1402 ~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1433 (1433)
+.|.+++++++|.++|+++++++|++....+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998776665
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-91 Score=949.25 Aligned_cols=561 Identities=24% Similarity=0.406 Sum_probs=494.9
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--CeeeeEEEEcCccCCc--ccccceEEEeccCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYISGSIMISGYPKKQ--ETFARISGYCEQNDIHSP 934 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~ 934 (1433)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 446799999999999999999999999999999999998632 2469999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCC----CChhHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeE
Q 000541 935 NVTVYESLLYSAWLRLPLE----VDSPTRKM-FIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1009 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr~~~~----~~~~~~~~-~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il 1009 (1433)
.+||+|+|.|++.+|.|.. .+.+++.+ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 9999999999998887642 23333333 357789999999999999999888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcChhHHHHHHhhCC
Q 000541 1010 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIR 1088 (1433)
Q Consensus 1010 ~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~ 1088 (1433)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|.+ |+++|+|+. +++++||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999875 999999999998899999999999986 899999997 68999999985
Q ss_pred CccCCCCCCCcccceEEecCCccc-------c---cccccHHHHHHhcHHHHHHHHHHHhhcCCC---------------
Q 000541 1089 GVSKIKDGYNPATWMLEVTAPSQE-------T---ALGIDFADIYKSSELYRRNKALIKDISKPA--------------- 1143 (1433)
Q Consensus 1089 g~~~~~~~~npad~~l~v~~~~~~-------~---~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1143 (1433)
. +||+++|||||++|+++++.+ . ....+|++.|++|+.+++..+.++......
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4 699999999999999875421 1 123479999999998887666554322110
Q ss_pred CCCCCCcCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHH
Q 000541 1144 PGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAV 1223 (1433)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1223 (1433)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++ +++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHH
Confidence 00111122346889999999999999999999999999999999999999999999999864 578899999999999
Q ss_pred HHHHHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhHHHHHHHHHH
Q 000541 1224 LFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMF 1303 (1433)
Q Consensus 1224 ~~~~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~ 1303 (1433)
+++++.++..+ +.+..||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99998887665 55667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCCcccccC
Q 000541 1304 FTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLE 1383 (1433)
Q Consensus 1304 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~ 1383 (1433)
++.++++++++++++++|+..+|+.++++++.++++|+||++|.++||+||+|++|+||++|+++|+++|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877763
Q ss_pred ----C---------------------C---CcHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000541 1384 ----S---------------------G---ETVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNF 1430 (1433)
Q Consensus 1384 ----~---------------------~---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1430 (1433)
. | .++.+|+...|||+++|+|++++++++|+++|++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 145789998899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-90 Score=929.63 Aligned_cols=562 Identities=24% Similarity=0.384 Sum_probs=484.9
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYPKKQETFARISGYCEQNDIHSPNVT 937 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 937 (1433)
.++.+|+||||.++|||+++|+|||||||||||++|+|+.++. ..+|+|.+||++......++.++||+|+|.|++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999997642 358999999998754444678999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-------CChhHH------------------------HHHHHHHHHHcCCcccccccccCCCCC
Q 000541 938 VYESLLYSAWLRLPLE-------VDSPTR------------------------KMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~-------~~~~~~------------------------~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
|+|+|.|++.++.+.. ....++ +..++++++.+||.+++|+.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999999998764321 111111 123578999999999999999998889
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|.+ |
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-G 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-c
Confidence 9999999999999999999999999999999999999999999999986 4899999999999899999999999985 8
Q ss_pred EEEEEcCCCcChhHHHHHHhhCCCccCCCCCCCcccceEEecCCccc-c-----------cccccHHHHHHhcHHHHHHH
Q 000541 1066 QEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNPATWMLEVTAPSQE-T-----------ALGIDFADIYKSSELYRRNK 1133 (1433)
Q Consensus 1066 ~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~-~-----------~~~~d~~~~~~~s~~~~~~~ 1133 (1433)
+++|+||. +++.+||+++| . +||+++|||||++|+++..+. . ....++++.|++|+.+++..
T Consensus 415 ~ivy~G~~----~~~~~yF~~lG-f-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESCG-F-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHcC-C-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999997 68999999995 4 699999999999999985332 1 11246899999998887655
Q ss_pred HHHHhhcCCCCCCCCCcCCCcccCcHHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHH
Q 000541 1134 ALIKDISKPAPGSKDLHFATQYAQSFFTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLF 1213 (1433)
Q Consensus 1134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1213 (1433)
+.++.........+.....+.|..+++.|++.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 44332111101111111234588999999999999999999999999999999999999999999999987654555667
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchh
Q 000541 1214 NAMGSMYTAVLFLGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAA 1293 (1433)
Q Consensus 1214 ~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~ 1293 (1433)
.++|++|++++++.+.++.. ++.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||+++++
T Consensus 569 ~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 78899999998887766544 47788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHH
Q 000541 1294 KFLWYQFFMFFTLLYFTYYGMMAVAMTPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVAS 1373 (1433)
Q Consensus 1294 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~ 1373 (1433)
+||.|+++++++.++++++++++++++|+..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|+++|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccc---cC-CCC-cHHHHHHhhhCCccc--chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000541 1374 QFGDIQDR---LE-SGE-TVEQFLRSFFGFKHD--FLGVVAAVVFAFPVLFALIFAVGIKVFN 1429 (1433)
Q Consensus 1374 ~~~~~~~~---~~-~~~-~~~~~~~~~~g~~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1429 (1433)
||.+.... |. ... ++.+|+ +.+||..+ +.|+++++|++|+++|.+++++++++++
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99765432 11 112 445555 68899754 5699999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-84 Score=809.83 Aligned_cols=563 Identities=26% Similarity=0.456 Sum_probs=501.0
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYPKKQETFARISGYCEQNDIHSPNVT 937 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 937 (1433)
.+..+|+|+||.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999976532 236799999998776544788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CChhHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000541 938 VYESLLYSAWLRLPLE----VDSPTRK-MFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~----~~~~~~~-~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LD 1012 (1433)
|+|+|.|+++++.|.. .++.++. +..+.+++.+||.+|+|++||+..++|+||||||||+||.+++.+|+++|+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998843 2222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCcChhHHHHHHhhCCCcc
Q 000541 1013 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVS 1091 (1433)
Q Consensus 1013 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~ 1091 (1433)
|+|+|||+.++.++++.||++++. +.|+++++|||+.+++++||++++|.+ |++||+||. .++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 999999999999999999999865 899999999999999999999999996 899999998 68999999986 3
Q ss_pred CCCCCCCcccceEEecCCcccc-----------c-ccccHHHHHHhcHHHHHHHHHHHhhcCCCCCCCCCcCCCcccCcH
Q 000541 1092 KIKDGYNPATWMLEVTAPSQET-----------A-LGIDFADIYKSSELYRRNKALIKDISKPAPGSKDLHFATQYAQSF 1159 (1433)
Q Consensus 1092 ~~~~~~npad~~l~v~~~~~~~-----------~-~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1159 (1433)
+||+..++|||+.+|++...+. . .-.++++.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 1 114799999999999876554433222222233334456799999
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 000541 1160 FTQCMACLWKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMGSMYTAVLFLGVQNAASVQPVVS 1239 (1433)
Q Consensus 1160 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1239 (1433)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..+..+..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 4567788999999999999888877766 5556
Q ss_pred hhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000541 1240 IERTVFYRERAAGMYSALPYAFAQALIEIPYIFVQSVTYGVIVYAMIGFEWTAAKFLWYQFFMFFTLLYFTYYGMMAVAM 1319 (1433)
Q Consensus 1240 ~er~v~~RE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1319 (1433)
+.|+||+|+|...+|++++|.++..+.++|+.++.+++|.+|+||++||.++|++||.|+++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhcccccCCCCCcchhhhhhhhcHHHHHHHHHHHHHhCCcccccC-CCC------------
Q 000541 1320 TPNHHISGIVAFAFYGLWNVFSGFIIPRTRIPIWWRWYYWACPVSWTLYGLVASQFGDIQDRLE-SGE------------ 1386 (1433)
Q Consensus 1320 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~y~~~~l~~~~~~~~~~~~~-~~~------------ 1386 (1433)
+|+...|+.++++.+....+++||+||.++||+||+|++|+||+.|+++++++|||++.+.+|. .|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988886 111
Q ss_pred ------------cHHHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000541 1387 ------------TVEQFLRSFFGFKHDFLGVVAAVVFAFPVLFALIFAVGIKVFNFQ 1431 (1433)
Q Consensus 1387 ------------~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1431 (1433)
.+.+|++..|.|++.|.|++++|++||.++|.+++.+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 246788888999999999999999999999999999999999853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=769.49 Aligned_cols=584 Identities=31% Similarity=0.520 Sum_probs=491.3
Q ss_pred CceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000541 119 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTL 198 (1433)
Q Consensus 119 p~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTL 198 (1433)
..++++|+|+++++... .+..+++|+||||.++|||++||+||+|||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 45789999999987532 1145789999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcC
Q 000541 199 LLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278 (1433)
Q Consensus 199 L~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1433)
|++|+|+......++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|+++-+.+ +++
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~------ 139 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSK------ 139 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCH------
Confidence 9999999987667899999999887777778899999999999999999999999999875421 222
Q ss_pred CCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCC
Q 000541 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGL 358 (1433)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgL 358 (1433)
++.+.++|.+++.|||.+|+||+||+...||+||||||||+||..|+.+|+|||+|||||||
T Consensus 140 ------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 140 ------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred ------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 22346789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHH
Q 000541 359 DSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQ 438 (1433)
Q Consensus 359 D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 438 (1433)
|+.++.++++.|+++|+. |+|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999986 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHH
Q 000541 439 EVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELL 518 (1433)
Q Consensus 439 evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~ 518 (1433)
++.+..+..+..... .......+.++..+...+......... . +..........++|.|+..+.+|.+.
T Consensus 281 ~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~s~~~q~~~L~~R~~~ 349 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSL----S-TSKKVEIGTSPSWWTQFKILLKRSLK 349 (613)
T ss_pred HHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhc----c-cccccccccCCcHHHHHHHHHHHHhH
Confidence 988743110000000 000000011100000000000000000 0 00000011167899999999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHHHHHHHHHHHHHHhh-hHHHhhhcchhhHhhhcCC
Q 000541 519 LMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMA-EIPMTIAKLPIFYKQRDLR 597 (1433)
Q Consensus 519 ~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~il~~~~~~~~-e~~~~~~~~~vf~kqr~~~ 597 (1433)
.+.|++..+..|..+.+++++++|++||+.+.++.. .....|++||.+.+..+..+. .+.....++++|.||+..+
T Consensus 350 ~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~ 426 (613)
T KOG0061|consen 350 NIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSG 426 (613)
T ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998654433 235678888888888776666 5778889999999999999
Q ss_pred cccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHH
Q 000541 598 FYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSF 677 (1433)
Q Consensus 598 ~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~ 677 (1433)
+|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.++.++...++.++..+++++.++...|.+++++
T Consensus 427 ~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~ 506 (613)
T KOG0061|consen 427 LYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPV 506 (613)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCcccccCC--CCCCchHHHHhhccCcccccchhHH
Q 000541 678 ALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLP--NTTEPLGVQVLKSRGFFTDAYWYWL 755 (1433)
Q Consensus 678 ~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~ 755 (1433)
+++.+++++||+++.+.+|.||.|+.|+|+..|+++++++|||.+....|... ..+...|..+++..++...+ .|.
T Consensus 507 ~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ 584 (613)
T KOG0061|consen 507 LLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--FWL 584 (613)
T ss_pred HHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--cch
Confidence 99999999999999999999999999999999999999999999744444333 34567789999999987664 588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 000541 756 GLGALAGFILLFNFGFTLALSFLN 779 (1433)
Q Consensus 756 ~~g~l~g~~i~f~~~~~l~l~~l~ 779 (1433)
++.++++++++|.++.++++++..
T Consensus 585 ~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 585 DLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=777.54 Aligned_cols=569 Identities=25% Similarity=0.423 Sum_probs=479.9
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCC
Q 000541 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 166 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 245 (1433)
++++++|+|+|+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44577999999999999999999999999999999999998875556899999999876544567899999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc-
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM- 324 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~- 324 (1433)
||+|||.|+++++.+.. ..+. +....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VTKK------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CCHH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999988753211 1111 122346789999999999999999864
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999876 4778888888888999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|+++|+|+++++.+||+++||+||++.|++||+.++++..+..+. . ...+.+++.+.|+.+...++..++...
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999999865432110 0 012234566666665544443322221
Q ss_pred ccccc---cccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhh
Q 000541 485 PFDKR---KSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIY 561 (1433)
Q Consensus 485 ~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~ 561 (1433)
..... ...........+..+++.|+..+++|.++..+||+..+..++++.+++|+++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 11000 000011122456788999999999999999999999999999999999999999999976543 234456
Q ss_pred hHHHHHHHHHHHHHHhhh-HHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHH
Q 000541 562 TGALFFIVLMIMFNGMAE-IPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRL 640 (1433)
Q Consensus 562 ~g~lff~il~~~~~~~~e-~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 640 (1433)
.|++|+.++..+|.++.+ +.....++++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 788999988888876544 4556679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhh
Q 000541 641 FRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEF 720 (1433)
Q Consensus 641 f~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef 720 (1433)
|.++++++++..++.+++.++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCCC---CCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000541 721 LGNSW-RKVLPNT---TEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFL 778 (1433)
Q Consensus 721 ~~~~~-~~~~~~~---~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l 778 (1433)
.+..+ .|...+. +...|..+++.+|+... +.|.+++++++++++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 4432111 23458999999998765 459999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=767.58 Aligned_cols=609 Identities=22% Similarity=0.355 Sum_probs=468.8
Q ss_pred CCceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 000541 118 LPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTT 197 (1433)
Q Consensus 118 ~p~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKST 197 (1433)
.+.++++|.|+++.+.......+... ..+.....- ......++.+++++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~-~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKP-KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----ccccccccc-ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35789999999999753310111110 111000000 0111222344578999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhc
Q 000541 198 LLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAA 277 (1433)
Q Consensus 198 LL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1433)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.... ..+.
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~---- 176 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQ---- 176 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHH----
Confidence 999999998764 3589999999987542 23569999999999999999999999876542110 0110
Q ss_pred CCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCC
Q 000541 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTG 357 (1433)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsg 357 (1433)
+....++.+++.+||++++||.||++..++|||||||||+||++|+.+|+++||||||+|
T Consensus 177 --------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 177 --------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred --------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 112346779999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHH
Q 000541 358 LDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437 (1433)
Q Consensus 358 LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 437 (1433)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 4677777777777789999999999999999999999999999999999999999999999
Q ss_pred HhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC---cccccc-----cccc-ccccCccCCCHHHH
Q 000541 438 QEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI---PFDKRK-----SHRA-ALTTKIYGVSKKEL 508 (1433)
Q Consensus 438 ~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~ 508 (1433)
.++++...+.+.....+.+ ...+++.+.|+... .++..++... +....+ ..+. ......+..+++.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 11233444443211 1111111100 000000 0000 00112245678999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHHHHHHHHHHHH-HHhhhHHHhhhcc
Q 000541 509 LKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMF-NGMAEIPMTIAKL 587 (1433)
Q Consensus 509 ~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~il~~~~-~~~~e~~~~~~~~ 587 (1433)
+..+++|+++. +|+......|+++.+++|+++|++||+.+ ..+...+.|++||++++.++ ..+..+.....++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78877778999999999999999999874 12345678999999877665 4567777778899
Q ss_pred hhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000541 588 PIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRN 667 (1433)
Q Consensus 588 ~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~ 667 (1433)
++|+|||..++|++++|++++++.++|+.++.+++|++++|||+|+.+++++||.+++++++...++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCcc-----cccCCCCCCchHHHHhh
Q 000541 668 IVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW-----RKVLPNTTEPLGVQVLK 742 (1433)
Q Consensus 668 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~~-----~~~~~~~~~~~G~~~L~ 742 (1433)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||+.|+++++++|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976542 34221100001111222
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000541 743 SRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLN 779 (1433)
Q Consensus 743 ~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~ 779 (1433)
...+. ....|.+++++++++++|.++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 224688999999999999999999987653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-71 Score=697.47 Aligned_cols=771 Identities=20% Similarity=0.263 Sum_probs=414.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 244 (1433)
+..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++.++.. +.++|.|+|+|.+| .
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~ 440 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-A 440 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-c
Confidence 567999999999999999999999999999999999999998 9999999999987764 46899999999655 6
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||+|||.|+.. |...+...+|+. .....+.+. .|++..||.||+++
T Consensus 441 ~tI~eNI~~G~~-------------------------dat~~~i~~a~k-----~ana~~fi~---~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 441 TTIRENIRYGKP-------------------------DATREEIEEAAK-----AANAHDFIL---KLPDGYDTLVGERG 487 (1228)
T ss_pred ccHHHHHhcCCC-------------------------cccHHHHHHHHH-----HccHHHHHH---hhHHhhcccccCCC
Confidence 799999999732 111222222221 111233333 38899999999988
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.. |||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++.. .++|||+ +.|....+-+ +|+|++|++
T Consensus 488 ~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~~ 562 (1228)
T KOG0055|consen 488 VQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVMEE 562 (1228)
T ss_pred CC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEEC
Confidence 74 99999999999999999999999999999999999999999999864 4667766 7788877777 999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHH--HhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhh--
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFL--QEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGD-- 480 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl--~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~-- 480 (1433)
|+|++.|+++|+... ..-.++.+ |+....++. ..+.. .. .++.....+.+........
T Consensus 563 G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~--~~-----~~~~~~s~~~s~~~~~~~~~~ 624 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEE--SL-----KEERSRSLKSSSSSPSLSRGS 624 (1228)
T ss_pred CEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-ccccc--ch-----hhhhhhccccccccccccCCc
Confidence 999999999999862 11122221 222221111 00000 00 0000000000000000000
Q ss_pred ----hh-cCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHh---cccCCCC
Q 000541 481 ----EL-RIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLF---FRTKMHR 552 (1433)
Q Consensus 481 ----~l-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf---~~~~~~~ 552 (1433)
.. ..+.++....+ ........++++.++.+. .+|....-.......+.....+.+++.+.++ +..+.+
T Consensus 625 ~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~~i~k~~~-pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~- 700 (1228)
T KOG0055|consen 625 NRSNLLSVKPEGEDPEEP--VSEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD- 700 (1228)
T ss_pred cccccccccccccccccc--cccccccccHHHHHHhcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH-
Confidence 00 00000000000 011112334444443321 1222221122222222333334455554433 222211
Q ss_pred CccccchhhhHHHHHHHH----------HHHHHHhhhHHHhhhcchhhHh--hhcCCcccchhHHHHHHHH----Hhh--
Q 000541 553 DSITDGVIYTGALFFIVL----------MIMFNGMAEIPMTIAKLPIFYK--QRDLRFYPSWAYALSTWIL----KIP-- 614 (1433)
Q Consensus 553 ~~~~~~~~~~g~lff~il----------~~~~~~~~e~~~~~~~~~vf~k--qr~~~~y~~~ay~la~~l~----~iP-- 614 (1433)
..........++|..+. ..+|.-++|.....-+...|.+ ..+..||---... +.... +.|
T Consensus 701 -~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~v 778 (1228)
T KOG0055|consen 701 -ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNV 778 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHH
Confidence 11111111222222211 1222333333333233333332 1233444322111 21111 111
Q ss_pred -------HHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCchH---------HH
Q 000541 615 -------ISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLF-------LNQMASALFRLIAATGRNIV---------VA 671 (1433)
Q Consensus 615 -------~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l-------~~~~~~~lf~~i~a~~~~~~---------~a 671 (1433)
++.+-..+-.+++-..++ |..-|-+.++ +........+++........ ..
T Consensus 779 r~~v~~rl~~vv~~~~~~~~~iiia-------f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~ 851 (1228)
T KOG0055|consen 779 RAAVGDRLSLVVQNIAAVIIGIIIA-------FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAI 851 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 111110111111111111 1111100000 00000000111111111000 00
Q ss_pred HHhHHHHHHHHHHHhccccc--ccchhhh---HHHHHhHChHHHHHHHHHHHhhcCCcccccCCCCCCchHHHHhhccCc
Q 000541 672 NTFGSFALLLLFVLGGFVLS--REDIKKW---WIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGF 746 (1433)
Q Consensus 672 ~~~~~~~~~~~~l~~Gf~i~--~~~i~~~---~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~ 746 (1433)
-.+..+=.+-.+..--.++. .+...+. ..+-.+++-+.|++...+.---... +...|...+..-..
T Consensus 852 eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~---------~f~~G~~Li~~g~~ 922 (1228)
T KOG0055|consen 852 EAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYAL---------SFWYGARLISNGEM 922 (1228)
T ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHHHHhcCCc
Confidence 01111100000000000000 0000000 1111222222222211110000000 00011111111000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCcccccccc-cccccccCCCCCccccccCCCcchhhhhccccc
Q 000541 747 FTDAYWYWLGLGALAGFILLFNFG-FTLALSFLNPFGKNQAVISQE-SQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKK 824 (1433)
Q Consensus 747 ~~~~~~~w~~~g~l~g~~i~f~~~-~~l~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1433)
..... +.+...+.|... ..-+..|.....+.+...... ..-++ .+ ..+.. ..
T Consensus 923 ~~~~~-------~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr----------~~-----~i~~~----~~ 976 (1228)
T KOG0055|consen 923 TFEDV-------FRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR----------KP-----TIDPD----ST 976 (1228)
T ss_pred CHHHH-------HHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC----------CC-----CCCCC----CC
Confidence 00000 000001111110 111122221111111000000 00000 00 00000 00
Q ss_pred cCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeee
Q 000541 825 RGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 904 (1433)
Q Consensus 825 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~ 904 (1433)
.+...|.-...++|+||+|+|+.. ++.+||+|+|+++++|+.+||+|||||||||.+.+|-...+ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 111122233569999999999754 34679999999999999999999999999999999988776 679
Q ss_pred eEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH-------cCCcc
Q 000541 905 GSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL-------VELNP 974 (1433)
Q Consensus 905 G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~-------l~l~~ 974 (1433)
|.|.|||++++. ..+|+.+|.|.|+|.+|. -|++||+.|+. . +.+.++ +.+.++. .+|.+
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~e----Ii~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEE----IIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHH----HHHHHHHhhhHHHHhcCcC
Confidence 999999998765 356788999999999875 59999999981 1 122222 2222222 34566
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH
Q 000541 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEA 1054 (1433)
Q Consensus 975 ~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~ 1054 (1433)
-.|+.+|..|. .||||||||++||||+++||+||+|||.||.||+++.+.|+++|.+.. .|||.|+++|++| ....
T Consensus 1115 GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqn 1190 (1228)
T KOG0055|consen 1115 GYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQN 1190 (1228)
T ss_pred cccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhc
Confidence 67889988764 799999999999999999999999999999999999999999999864 6899999999875 5788
Q ss_pred hcceeEEecCcEEEEEcCC
Q 000541 1055 FDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1055 fd~~~ll~~gG~~~y~G~~ 1073 (1433)
+|.|.++++ |+++..|+-
T Consensus 1191 aD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1191 ADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred CCEEEEEEC-CEEEecccH
Confidence 999999985 899999985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-70 Score=734.42 Aligned_cols=224 Identities=26% Similarity=0.393 Sum_probs=191.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5899999988741 12569999999999999999999999999999999999987 4689999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 915 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
.. ...++.+|||+|++.+++.+||+|+|.+.+.++. .+.++.++.++++++.++|.+.+|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998777652 233444566889999999998888775 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||+|+|+++ ++...+|++++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999888999999999864 56677999999985 89999998
Q ss_pred CCcChhHHHHHHh
Q 000541 1073 LGRHSSHLIKYFE 1085 (1433)
Q Consensus 1073 ~~~~~~~~~~yF~ 1085 (1433)
. +++...|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 7 45555443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-70 Score=705.29 Aligned_cols=766 Identities=20% Similarity=0.251 Sum_probs=419.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
...|+|||+.|++|++++|+||.||||||||.+|.|+++.. +|+|.++| .++||||.+ |+.+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-WI~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-WIQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-HhhCCcHH
Confidence 33799999999999999999999999999999999999875 99999999 599999998 56678999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
|||.|+..+. .+++.+.-++|.+++|-+ -|+.+..|.||++++ +|
T Consensus 600 eNILFG~~~d--------~~rY~~Vi~aC~L~~Dle--------------------------~Lp~GD~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--------EERYDKVIKACALKKDLE--------------------------ILPFGDLTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--------HHHHHHHHHHccCHhHHh--------------------------hcCCCCcceecCCcc-CC
Confidence 9999986542 122334445565554321 278889999999998 59
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 408 (1433)
|||||||+++|||++++++|++||+|.|++|+++..+|++.+-.. .++++|+|.++| .-+..+.+|.|++|++|+|.
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~--~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG--LLRGKTVILVTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh--hhcCCEEEEEeC-chhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999999999999776632 355677777777 56788899999999999999
Q ss_pred EecChhHHHH---HHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCc
Q 000541 409 YQGPREHVLE---FFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIP 485 (1433)
Q Consensus 409 ~~G~~~~~~~---~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~ 485 (1433)
..|+.+|+.+ .|+.+ +.+....++.. .....+.......+. +. +.........+. ...
T Consensus 722 ~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~ 782 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK-SKD 782 (1381)
T ss_pred cccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhcccccc-ccc
Confidence 9999999984 23322 00000000000 000000000000000 00 000000000000 000
Q ss_pred cccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHHHHhcccCCCCCc---c---ccc
Q 000541 486 FDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYI-FKLCQLTIMGLVAMTLFFRTKMHRDS---I---TDG 558 (1433)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~-~~~~~~~i~ali~gtlf~~~~~~~~~---~---~~~ 558 (1433)
..+.+...........+.-.|...+ .+........... +-+.......+.+++-||-..+.... . .+.
T Consensus 783 ~~~~~~~~~~~ee~~~G~v~~~vY~-----~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~ 857 (1381)
T KOG0054|consen 783 EKEEEDKLVQEEERETGKVSWSVYK-----KYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVST 857 (1381)
T ss_pred ccchhhHHHHHHHHhcCEeeHHHHH-----HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 0000000000000011111111111 1111101111111 11112222222333333322221111 1 111
Q ss_pred hh----hhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcc
Q 000541 559 VI----YTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFD 634 (1433)
Q Consensus 559 ~~----~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~ 634 (1433)
.. |..+.+..+++..+.++.-....+..-..+ .-.+-.-+.+.|++|++.+
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~L------------h~~ml~~Ilrapm~FFdtT------------- 912 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKL------------HDKLLNSILRAPMSFFDTT------------- 912 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhCcchhcCCC-------------
Confidence 11 222222222222222221111111100000 1123344566677775433
Q ss_pred ccHhHHHHHH---------HHHHHHHHHHHHHHHHHHHh----cCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHH
Q 000541 635 PNVGRLFRQY---------LLLLFLNQMASALFRLIAAT----GRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIW 701 (1433)
Q Consensus 635 ~~~~~ff~~~---------ll~~l~~~~~~~lf~~i~a~----~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W 701 (1433)
..||.+.+| .+.+.+..+...+..+++.+ ..++.+...+.++.++.+++..-|.-..+++++ .=
T Consensus 913 -P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR--Le 989 (1381)
T KOG0054|consen 913 -PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR--LE 989 (1381)
T ss_pred -CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hh
Confidence 356666554 22333333333333222222 112222222222222222222222222222221 01
Q ss_pred HHhHChHHHHHHHHHHHhhcCCcccccCCCCCCchHHHHhhccCc--------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 000541 702 AYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGF--------FTDAYWYWLGLGALAGFILLFNFGFTL 773 (1433)
Q Consensus 702 ~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~--------~~~~~~~w~~~g~l~g~~i~f~~~~~l 773 (1433)
..--||+.-.+...+.---.-+.+ +.....-.......+. .....|.-+.+-.+..+++++..++.+
T Consensus 990 sitRSPi~sh~~Etl~GlsTIRAf-----~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v 1064 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQGLSTIRAF-----GKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV 1064 (1381)
T ss_pred hcccchHHHhHHHHhcCcceeeec-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111244443332211100000000 0000000001100010 011123333333333333322222221
Q ss_pred HHHhcCC--CCCccccccc-----------ccccccccCCCCCccccccCCCcchhhhhcc-ccccCccccCCceeEEEe
Q 000541 774 ALSFLNP--FGKNQAVISQ-----------ESQSNEHDNRTGGTIQLSTSGRSKAEVKANH-HKKRGMVLPFKPHSITFD 839 (1433)
Q Consensus 774 ~l~~l~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 839 (1433)
. ..... .+..+-.+++ .....+.++.+.+++|..++...+.+..... ..+.+..+|. ...++|+
T Consensus 1065 l-~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~-~G~I~f~ 1142 (1381)
T KOG0054|consen 1065 L-LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPS-KGEIEFE 1142 (1381)
T ss_pred H-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCC-CCeEEEE
Confidence 1 11110 1111111111 1112223344445554433322111211111 1112223332 2479999
Q ss_pred ceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc---
Q 000541 840 EIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ--- 916 (1433)
Q Consensus 840 ~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--- 916 (1433)
|++.+|.. +-..+|||||+.|+|||.+||+|++|||||||+++|.+... +.+|+|.|||.++.+
T Consensus 1143 ~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1143 DLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGL 1209 (1381)
T ss_pred EeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccH
Confidence 99877742 12369999999999999999999999999999999999877 568999999998766
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCC
Q 000541 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ-------ALVGLPGVSGLS 989 (1433)
Q Consensus 917 ~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~-------~~vg~~~~~~LS 989 (1433)
.++|+.++.+|||+.+|.. |||+||. | ..+..++.+.++||..+|.+.-. ..+. +++.++|
T Consensus 1210 ~dLRsrlsIIPQdPvLFsG-TvR~NLD-------P---f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~S 1277 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSG-TVRFNLD-------P---FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVS-EGGENFS 1277 (1381)
T ss_pred HHHHhcCeeeCCCCceecC-ccccccC-------c---ccccCHHHHHHHHHHhChHHHHhhCCcCCCceec-CCCccCC
Confidence 4578889999999998764 8888872 2 22333444566666666654332 2222 2457899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-.+ ++|||++.|+.+ ....+|+|+||++ |+++.
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~DrVlVld~-G~v~E 1353 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSDRVLVLDA-GRVVE 1353 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcCeEEEeeC-CeEee
Confidence 9999999999999999999999999999999999999999998764 799999999865 5667899999996 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
+|++.
T Consensus 1354 fdsP~ 1358 (1381)
T KOG0054|consen 1354 FDSPA 1358 (1381)
T ss_pred cCChH
Confidence 99983
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-66 Score=704.74 Aligned_cols=211 Identities=23% Similarity=0.327 Sum_probs=176.9
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+++|+. +...+|+|+|++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 36999999999841 12359999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+|+.++||||++.++.. |+||||.+.. ..+ ++.+.++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999998875 9999996431 111 2345666776666432 35556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999975 4899999999864 5677999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++.+|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=700.53 Aligned_cols=211 Identities=23% Similarity=0.309 Sum_probs=176.9
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 36999999999841 12359999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+++.++||||++.+++. |++|||.+.. +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 4567889999999988875 9999996421 112 2345667777766543 25556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRL--NTIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 479999999986 45677999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 899999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=604.95 Aligned_cols=474 Identities=26% Similarity=0.341 Sum_probs=365.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcceEEEECCccCCCCcc-------cceEEEEcCCC-
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-LRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD- 239 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 239 (1433)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4568999999997654432 25799999994
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 240 -NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 240 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
.+-|-+||.+.|.-..+..+... ..++...+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 55677999999887665543211 11233446678999999987654
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
+++.+.|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.+. .+++++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6788899999999999999999999999999999999999999999999999864 578888899999999999999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhh
Q 000541 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKV 478 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~ 478 (1433)
|+||++|++++.|+++++.+. |. .||. +.+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT-----------------~~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYT-----------------RGL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------Cccc-----------------HHH
Confidence 999999999999999998641 10 0110 000
Q ss_pred hhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 000541 479 GDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDG 558 (1433)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~ 558 (1433)
...
T Consensus 255 l~a----------------------------------------------------------------------------- 257 (539)
T COG1123 255 LAA----------------------------------------------------------------------------- 257 (539)
T ss_pred Hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHh
Q 000541 559 VIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVG 638 (1433)
Q Consensus 559 ~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 638 (1433)
.|....
T Consensus 258 ----------------------------~p~~~~---------------------------------------------- 263 (539)
T COG1123 258 ----------------------------VPRLGD---------------------------------------------- 263 (539)
T ss_pred ----------------------------CCCccc----------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHH
Q 000541 639 RLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVN 718 (1433)
Q Consensus 639 ~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~n 718 (1433)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccccccc
Q 000541 719 EFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHD 798 (1433)
Q Consensus 719 ef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 798 (1433)
.....
T Consensus 264 ------~~~~~--------------------------------------------------------------------- 268 (539)
T COG1123 264 ------EKIIR--------------------------------------------------------------------- 268 (539)
T ss_pred ------ccccc---------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEE
Q 000541 799 NRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTA 878 (1433)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 878 (1433)
... ... .+ ...-++++|++..+..+.... ....+...+++||||.+++||++|
T Consensus 269 --------~~~------~~~----------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lg 321 (539)
T COG1123 269 --------LPR------RGP----------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLG 321 (539)
T ss_pred --------ccc------ccc----------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEE
Confidence 000 000 00 012366777776665432111 001234679999999999999999
Q ss_pred EeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC--Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCC
Q 000541 879 LMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK--KQ---ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLP 951 (1433)
Q Consensus 879 i~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~--~~---~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~ 951 (1433)
|+|+||||||||.++|+|+.+ +.+|+|.++|.+. +. ...++.+-+++||+ .+.|.+||++.+.-......+
T Consensus 322 lVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~ 399 (539)
T COG1123 322 LVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG 399 (539)
T ss_pred EECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc
Confidence 999999999999999999988 4689999999762 11 22345666777775 578999999999766544332
Q ss_pred CCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 000541 952 LEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030 (1433)
Q Consensus 952 ~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l 1030 (1433)
. ...++++++.++++.++|.+ ..++. ...||||||||++|||||+.+|++|++|||||.||+..+..|.++|
T Consensus 400 ~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl 472 (539)
T COG1123 400 G--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL 472 (539)
T ss_pred c--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence 2 24566678999999999985 34433 3579999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1031 RNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1031 ~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
+++.++ |.|.|+++||.+ -+-..+|++++|.+ |++|..||.
T Consensus 473 ~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 473 KDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999876 999999999864 35567899999985 899999975
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-64 Score=624.75 Aligned_cols=460 Identities=21% Similarity=0.310 Sum_probs=350.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+.+|+|||+++++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999999861 128999999998764432 3569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++......+. ... .+....++.+++.+||++..+..++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-------MDY------------------------DAMYLRAQKLLAQLKLDINPATPVG--- 142 (506)
T ss_pred CcHHHHhhhcccccccCC-------cCH------------------------HHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999998653210000 000 0011235668999999877776665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+++|++++|+..++.++||+|++|++
T Consensus 143 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 --NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999854 356777799999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|++++.|+.+++.. .+..+
T Consensus 219 G~i~~~~~~~~~~~--------------------------------------------~~~~~----------------- 237 (506)
T PRK13549 219 GRHIGTRPAAGMTE--------------------------------------------DDIIT----------------- 237 (506)
T ss_pred CEEeeecccccCCH--------------------------------------------HHHHH-----------------
Confidence 99998886433200 00000
Q ss_pred ccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHH
Q 000541 485 PFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGA 564 (1433)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~ 564 (1433)
+ +. + ..
T Consensus 238 ------------------------------~-----------------------------~~--~--~~----------- 243 (506)
T PRK13549 238 ------------------------------M-----------------------------MV--G--RE----------- 243 (506)
T ss_pred ------------------------------H-----------------------------hh--C--cC-----------
Confidence 0 00 0 00
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHH
Q 000541 565 LFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 565 lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 644 (1433)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCc
Q 000541 645 LLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNS 724 (1433)
Q Consensus 645 ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~ 724 (1433)
.+.
T Consensus 244 --------------------------------------------------~~~--------------------------- 246 (506)
T PRK13549 244 --------------------------------------------------LTA--------------------------- 246 (506)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCc
Q 000541 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804 (1433)
Q Consensus 725 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1433)
.. + .
T Consensus 247 ----------------------------------------------------~~-~----------~------------- 250 (506)
T PRK13549 247 ----------------------------------------------------LY-P----------R------------- 250 (506)
T ss_pred ----------------------------------------------------cc-c----------c-------------
Confidence 00 0 0
Q ss_pred cccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCC
Q 000541 805 IQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884 (1433)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sG 884 (1433)
. . . .. ...-++++|+++.++. .+++.+|+|+|+++++||++||+||||
T Consensus 251 -------~---~---~-~~--------~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NG 298 (506)
T PRK13549 251 -------E---P---H-TI--------GEVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVG 298 (506)
T ss_pred -------c---c---c-CC--------CCceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCC
Confidence 0 0 0 00 0012667787765521 012358999999999999999999999
Q ss_pred CChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCC--CCC
Q 000541 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQND---IHSPNVTVYESLLYSAWLRLPL--EVD 955 (1433)
Q Consensus 885 aGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~--~~~ 955 (1433)
||||||+++|+|..++ +.+|+|.++|.++... ..++.++|++|+. .+++.+||.|++.+....+... ..+
T Consensus 299 sGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 377 (506)
T PRK13549 299 AGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRID 377 (506)
T ss_pred CCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccC
Confidence 9999999999998752 2589999999875321 1245689999985 4678899999998753211110 012
Q ss_pred hhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000541 956 SPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034 (1433)
Q Consensus 956 ~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~ 1034 (1433)
....++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 378 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 452 (506)
T PRK13549 378 DAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452 (506)
T ss_pred hHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH
Confidence 233345688999999996 4566553 4799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 000541 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075 (1433)
Q Consensus 1035 ~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~ 1075 (1433)
++|+|||+++|+++ ++.+.+|++++|.+ |+++..|+...
T Consensus 453 ~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 453 QQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 88999999999975 56778999999985 89999887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=669.63 Aligned_cols=217 Identities=19% Similarity=0.332 Sum_probs=178.5
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC------------
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 901 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~------------ 901 (1433)
..++|+||+|+|+.. ++..+|+|+|++|+||+.+||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999998521 1246999999999999999999999999999999999987741
Q ss_pred ----------------------------------------eeeeEEEEcCccCCc---ccccceEEEeccCCCCCCCCCH
Q 000541 902 ----------------------------------------YISGSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 902 ----------------------------------------~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
+.+|+|++||.++.+ ..+++.+|||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 158999999998754 45778899999999887 5799
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-------LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1011 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~L 1011 (1433)
+|||.|+. | +.+ ++.++++++..++.+ -.|+.+|..| ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998862 2 222 223556666655543 3477888644 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhcceeEEecC---cEE-EEEcCC
Q 000541 1012 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRG---GQE-IYVGSL 1073 (1433)
Q Consensus 1012 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g---G~~-~y~G~~ 1073 (1433)
|||||+||+.+...|++.|+++. .+++|+|+++|++ .....+|++++|++| |++ +..|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 3689999999986 457889999999973 674 478874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=682.51 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=177.1
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999998521 1259999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+++.++||||++.+++. |+||||.... +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 4567889999999999875 9999995211 112 2335667777776543 35556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl--~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRL--NTIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 479999999986 45778999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-64 Score=623.61 Aligned_cols=450 Identities=20% Similarity=0.331 Sum_probs=346.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999987 9999999988754321 3469999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.|+...... . ..... .+....++.+++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~---~---~~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNR---F---GRIDW------------------------KKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccc---c---CccCH------------------------HHHHHHHHHHHHHcCCCCCccCchh---
Confidence 9999999986432100 0 00000 0011235668999999987776665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++||.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999854 3 56777799999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|+++..|+.+++.. ++..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998776443200 0000000
Q ss_pred ccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHH
Q 000541 485 PFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGA 564 (1433)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~ 564 (1433)
+ . ..
T Consensus 238 -------------------------------------------------------------~--~--~~----------- 241 (501)
T PRK10762 238 -------------------------------------------------------------V--G--RK----------- 241 (501)
T ss_pred -------------------------------------------------------------c--C--CC-----------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHH
Q 000541 565 LFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 565 lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 644 (1433)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCc
Q 000541 645 LLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNS 724 (1433)
Q Consensus 645 ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~ 724 (1433)
.+.
T Consensus 242 --------------------------------------------------~~~--------------------------- 244 (501)
T PRK10762 242 --------------------------------------------------LED--------------------------- 244 (501)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCc
Q 000541 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804 (1433)
Q Consensus 725 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1433)
..+.
T Consensus 245 ---~~~~------------------------------------------------------------------------- 248 (501)
T PRK10762 245 ---QYPR------------------------------------------------------------------------- 248 (501)
T ss_pred ---cccc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCC
Q 000541 805 IQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884 (1433)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sG 884 (1433)
. . . +..+..++++|++. .+|+|+|+++++||+++|+||||
T Consensus 249 --~----~---~-------------~~~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NG 288 (501)
T PRK10762 249 --L----D---K-------------APGEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMG 288 (501)
T ss_pred --c----c---c-------------CCCCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCC
Confidence 0 0 0 00001356667652 26999999999999999999999
Q ss_pred CChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCC---CC
Q 000541 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQND---IHSPNVTVYESLLYSAWLRLPL---EV 954 (1433)
Q Consensus 885 aGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~---~~ 954 (1433)
|||||||++|+|..+ +.+|+|.++|.++... ..++.+||++|++ .+++.+||.|++.+........ ..
T Consensus 289 sGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 366 (501)
T PRK10762 289 AGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSL 366 (501)
T ss_pred CCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccccccc
Confidence 999999999999876 4589999999875421 2345699999995 4778899999998753211100 01
Q ss_pred ChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000541 955 DSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033 (1433)
Q Consensus 955 ~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~ 1033 (1433)
.....++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 367 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 367 KHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 2223345678899999995 5566653 479999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 000541 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075 (1433)
Q Consensus 1034 ~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~ 1075 (1433)
+++|+|||+++|++. .+.+.+|++++|.+ |++++.|+...
T Consensus 442 ~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 442 KAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 888999999999975 56778999999985 89999998753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-64 Score=625.84 Aligned_cols=458 Identities=21% Similarity=0.295 Sum_probs=348.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999887 9999999998765432 2469999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++...... .... ..... .+....++.+++.+||++..++.++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NIIDW------------------------REMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhccccccc--cccc-cccCH------------------------HHHHHHHHHHHHHcCCCCCcccchh---
Confidence 9999999875321000 0000 00000 0112235678999999887777665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ . +++|++++|+..++.++||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999865 3 56777799999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|++++.|+++++.. ++..+.
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHH----------------
Confidence 99999887654310 000000
Q ss_pred ccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHH
Q 000541 485 PFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGA 564 (1433)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~ 564 (1433)
+. . .. ..
T Consensus 241 ------------------------------------------------------------~~--~--~~-~~-------- 247 (510)
T PRK09700 241 ------------------------------------------------------------MV--G--RE-LQ-------- 247 (510)
T ss_pred ------------------------------------------------------------hc--C--CC-cc--------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHH
Q 000541 565 LFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 565 lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 644 (1433)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCc
Q 000541 645 LLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNS 724 (1433)
Q Consensus 645 ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~ 724 (1433)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred ccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCc
Q 000541 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804 (1433)
Q Consensus 725 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1433)
. . ..+
T Consensus 251 ----~-------------------~----------------------------~~~------------------------ 255 (510)
T PRK09700 251 ----N-------------------A----------------------------MKE------------------------ 255 (510)
T ss_pred ----c-------------------c----------------------------ccc------------------------
Confidence 0 0 000
Q ss_pred cccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCC
Q 000541 805 IQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884 (1433)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sG 884 (1433)
. . . . . + .+..++++|+++.+ ..+|+|+|+++++||+++|+||||
T Consensus 256 --~----~---~---~--~------~-~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NG 299 (510)
T PRK09700 256 --N----V---S---N--L------A-HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVG 299 (510)
T ss_pred --c----c---c---c--C------C-CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCC
Confidence 0 0 0 0 0 0 01136778877532 128999999999999999999999
Q ss_pred CChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccC---CCCCCCCCHHHHHHHHHHhc---CCC--
Q 000541 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQN---DIHSPNVTVYESLLYSAWLR---LPL-- 952 (1433)
Q Consensus 885 aGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~---d~~~~~lTv~E~l~f~a~lr---~~~-- 952 (1433)
||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+ ..+++.+||+|++.+....+ ...
T Consensus 300 sGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 377 (510)
T PRK09700 300 SGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAM 377 (510)
T ss_pred CCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccc
Confidence 999999999999876 4689999999875321 234568999998 45788999999998753211 000
Q ss_pred C-CChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 000541 953 E-VDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030 (1433)
Q Consensus 953 ~-~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l 1030 (1433)
. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|
T Consensus 378 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 452 (510)
T PRK09700 378 GLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452 (510)
T ss_pred cccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 0 01222334578899999996 6666654 479999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1031 RNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1031 ~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++++++|.|||+++|++. .+.+.+|++++|.+ |+++..++.
T Consensus 453 ~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 453 RQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999888999999999975 56778999999986 799988865
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-63 Score=628.46 Aligned_cols=487 Identities=20% Similarity=0.245 Sum_probs=353.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCC----------CCc------c-cce
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD----------EFV------P-QRT 231 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 231 (1433)
.++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|..++ ... . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999887 899999986431 111 1 136
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHH
Q 000541 232 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILK 308 (1433)
Q Consensus 232 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 308 (1433)
++||+|++ .+++.+||+||+.++.+.. +. .+. +....++.+++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA----------SRE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHH
Confidence 99999997 5788999999999986532 11 000 11223567899
Q ss_pred HhCCCc---cccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000541 309 ILGLDV---CADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385 (1433)
Q Consensus 309 ~lgL~~---~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 385 (1433)
.+||++ ..+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.++++++.. +++||.+
T Consensus 152 ~~gL~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 244444 4699999999999999999999999999999999999999999999986533 5667789
Q ss_pred ecChhhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHH
Q 000541 386 LQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEF 465 (1433)
Q Consensus 386 ~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~ 465 (1433)
+|+..++.++||+|++|++|++++.|+++++.+ -|.+....+ +
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~-----------------------------l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRA-----------------------------L 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhh-----------------------------h
Confidence 999999999999999999999999998876531 000000000 0
Q ss_pred HHHHHhcccchhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHh
Q 000541 466 ADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLF 545 (1433)
Q Consensus 466 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf 545 (1433)
... .+
T Consensus 269 ~~~---------------~~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAA---------------VP------------------------------------------------------------ 273 (623)
T ss_pred hhc---------------cC------------------------------------------------------------
Confidence 000 00
Q ss_pred cccCCCCCccccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhh
Q 000541 546 FRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVF 625 (1433)
Q Consensus 546 ~~~~~~~~~~~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 625 (1433)
+.. . .. + +. .|
T Consensus 274 -~~~---~-~~-~-----------------------------------~~-----------------~~----------- 284 (623)
T PRK10261 274 -QLG---A-MK-G-----------------------------------LD-----------------YP----------- 284 (623)
T ss_pred -ccc---c-cc-c-----------------------------------cc-----------------CC-----------
Confidence 000 0 00 0 00 00
Q ss_pred hhhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhH
Q 000541 626 LTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWC 705 (1433)
Q Consensus 626 i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~i 705 (1433)
. ..+.
T Consensus 285 ------------------------------------------------------------------~-~~~~-------- 289 (623)
T PRK10261 285 ------------------------------------------------------------------R-RFPL-------- 289 (623)
T ss_pred ------------------------------------------------------------------c-cccc--------
Confidence 0 0000
Q ss_pred ChHHHHHHHHHHHhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000541 706 SPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQ 785 (1433)
Q Consensus 706 sP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~ 785 (1433)
.. ...+.
T Consensus 290 ---------------~~---~~~~~------------------------------------------------------- 296 (623)
T PRK10261 290 ---------------IS---LEHPA------------------------------------------------------- 296 (623)
T ss_pred ---------------cc---ccccc-------------------------------------------------------
Confidence 00 00000
Q ss_pred cccccccccccccCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeec
Q 000541 786 AVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLN 865 (1433)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~ 865 (1433)
.. . + .... . .. +.....++++|+++.++...... ......+.+|+
T Consensus 297 -------~~--------------~--~--~~~~-~-~~------~~~~~~L~~~~l~~~y~~~~~~~--~~~~~~~~~l~ 341 (623)
T PRK10261 297 -------KQ--------------E--P--PIEQ-D-TV------VDGEPILQVRNLVTRFPLRSGLL--NRVTREVHAVE 341 (623)
T ss_pred -------cc--------------C--c--cccc-c-cc------cCCCceEEEeeeEEEEcCCCccc--cccCCceEEEe
Confidence 00 0 0 0000 0 00 00011378899988774210000 00001246999
Q ss_pred cceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc------cccceEEEeccCC--CCCCCCC
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE------TFARISGYCEQND--IHSPNVT 937 (1433)
Q Consensus 866 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~------~~~~~~gyv~Q~d--~~~~~lT 937 (1433)
||||.|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++ .+++.+|
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~t 419 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQT 419 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCC
Confidence 9999999999999999999999999999999986 4689999999875321 2356799999996 5788999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000541 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTs 1016 (1433)
|.|++.+....+. .....+.++.++++++.++|. +..+.. +..|||||||||+||++|+.+|+||+|||||+
T Consensus 420 v~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts 492 (623)
T PRK10261 420 VGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVS 492 (623)
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999987643321 112334456788999999995 455554 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1017 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1017 gLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|||+.++..++++|++++++ |.|||+++|+++ .+...+|++++|.+ |+++..|+.
T Consensus 493 ~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 493 ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999865 899999999975 46678999999985 899999985
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=616.77 Aligned_cols=453 Identities=20% Similarity=0.288 Sum_probs=345.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754332 2359999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.|+.... . +....++.+++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc-------------h-------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853100 0 001234568899999887777665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ . +++||.++|+.+++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 3 56777799999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|++++.|+++++... + ..+.+.
T Consensus 216 G~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~-------------- 237 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------D-----------------------------IIQAIT-------------- 237 (510)
T ss_pred CEEEEecChHHcCHH---------------H-----------------------------HHHHHh--------------
Confidence 999999987654210 0 000000
Q ss_pred ccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHH
Q 000541 485 PFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGA 564 (1433)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~ 564 (1433)
....... ...
T Consensus 238 --------------------------------------------------------------~~~~~~~-~~~------- 247 (510)
T PRK15439 238 --------------------------------------------------------------PAAREKS-LSA------- 247 (510)
T ss_pred --------------------------------------------------------------Ccccccc-ccc-------
Confidence 0000000 000
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHH
Q 000541 565 LFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 565 lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 644 (1433)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCc
Q 000541 645 LLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNS 724 (1433)
Q Consensus 645 ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~ 724 (1433)
...
T Consensus 248 --------------------------------------------------~~~--------------------------- 250 (510)
T PRK15439 248 --------------------------------------------------SQK--------------------------- 250 (510)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCc
Q 000541 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804 (1433)
Q Consensus 725 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1433)
.. ..+ + .
T Consensus 251 ~~-----------------~~~---------------------------------~----------~------------- 257 (510)
T PRK15439 251 LW-----------------LEL---------------------------------P----------G------------- 257 (510)
T ss_pred cc-----------------ccc---------------------------------c----------c-------------
Confidence 00 000 0 0
Q ss_pred cccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCC
Q 000541 805 IQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884 (1433)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sG 884 (1433)
. .. . . +..+.-++++|++. .+|+|+|+.+++||++||+||||
T Consensus 258 --~--------~~--~--~------~~~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NG 299 (510)
T PRK15439 258 --N--------RR--Q--Q------AAGAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVG 299 (510)
T ss_pred --c--------cc--c--c------CCCCceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCC
Confidence 0 00 0 0 00011366777662 15899999999999999999999
Q ss_pred CChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCCCCChh
Q 000541 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQND---IHSPNVTVYESLLYSAWLRLPLEVDSP 957 (1433)
Q Consensus 885 aGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~~~~~~ 957 (1433)
||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.|++......+.+......
T Consensus 300 sGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~ 377 (510)
T PRK15439 300 AGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPA 377 (510)
T ss_pred CCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChH
Confidence 999999999999876 4589999999875431 1234689999984 478889999998642111111111112
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000541 958 TRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036 (1433)
Q Consensus 958 ~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~ 1036 (1433)
..++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~ 452 (510)
T PRK15439 378 RENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452 (510)
T ss_pred HHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC
Confidence 2335678899999996 5666653 579999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1037 g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
|.|||+++|+++ .+.+.+|++++|.+ |++++.|..+
T Consensus 453 g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 453 NVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999999975 56778999999985 8999888764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=616.59 Aligned_cols=446 Identities=22% Similarity=0.310 Sum_probs=343.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcceEEEECC-----------------------cc
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRVSGRVTYNG-----------------------HD 222 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l--~~~~~~~G~V~~~G-----------------------~~ 222 (1433)
++.+|+|+|+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccccccccccccccccccc
Confidence 356999999999999999999999999999999999997 576 89999972 22
Q ss_pred CC-------CC------cccceEEEEcCC-CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHH
Q 000541 223 MD-------EF------VPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288 (1433)
Q Consensus 223 ~~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1433)
+. .. ..++.++|++|+ +.+++.+||+||+.|+....+.. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~--------------- 143 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GK--------------- 143 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HH---------------
Confidence 10 00 013468999997 67888999999999875432210 00
Q ss_pred HHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHH
Q 000541 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVN 368 (1433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~ 368 (1433)
+....++.+++.+||++..+..++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+
T Consensus 144 ---------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 209 (520)
T TIGR03269 144 ---------EAVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN 209 (520)
T ss_pred ---------HHHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH
Confidence 011235678999999877666554 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhh
Q 000541 369 SLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQ 448 (1433)
Q Consensus 369 ~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~ 448 (1433)
.|+++++.. +++||+++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 210 ~l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~--------------------------- 261 (520)
T TIGR03269 210 ALEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM--------------------------- 261 (520)
T ss_pred HHHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH---------------------------
Confidence 999986533 5677779999999999999999999999998876554311000
Q ss_pred hhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHH
Q 000541 449 YWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYI 528 (1433)
Q Consensus 449 ~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~ 528 (1433)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHH
Q 000541 529 FKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALST 608 (1433)
Q Consensus 529 ~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~ 608 (1433)
.. .
T Consensus 262 ---------------------------~~-------------------~------------------------------- 264 (520)
T TIGR03269 262 ---------------------------EG-------------------V------------------------------- 264 (520)
T ss_pred ---------------------------hh-------------------c-------------------------------
Confidence 00 0
Q ss_pred HHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcc
Q 000541 609 WILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGF 688 (1433)
Q Consensus 609 ~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf 688 (1433)
T Consensus 265 -------------------------------------------------------------------------------- 264 (520)
T TIGR03269 265 -------------------------------------------------------------------------------- 264 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHH
Q 000541 689 VLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFN 768 (1433)
Q Consensus 689 ~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~ 768 (1433)
. .+..
T Consensus 265 --~--~~~~----------------------------------------------------------------------- 269 (520)
T TIGR03269 265 --S--EVEK----------------------------------------------------------------------- 269 (520)
T ss_pred --h--hhcc-----------------------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHhcCCCCCcccccccccccccccCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecC
Q 000541 769 FGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMP 848 (1433)
Q Consensus 769 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 848 (1433)
. ... + . ...-++++|+++.++..
T Consensus 270 -----------~--------------------------~~~--~----------~--------~~~~l~~~~l~~~~~~~ 292 (520)
T TIGR03269 270 -----------E--------------------------CEV--E----------V--------GEPIIKVRNVSKRYISV 292 (520)
T ss_pred -----------c--------------------------ccc--C----------C--------CCceEEEeccEEEeccC
Confidence 0 000 0 0 00136788888776310
Q ss_pred ccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEc-Ccc---CCc------cc
Q 000541 849 QEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMIS-GYP---KKQ------ET 918 (1433)
Q Consensus 849 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~-G~~---~~~------~~ 918 (1433)
..+.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ ... ..
T Consensus 293 --------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~ 362 (520)
T TIGR03269 293 --------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGR 362 (520)
T ss_pred --------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHH
Confidence 0122469999999999999999999999999999999999876 458999996 532 111 12
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHH
Q 000541 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-----LRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 919 ~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-----~~~~~vg~~~~~~LSgGqr 993 (1433)
.++.+||++|++.+++.+||.|++.+...+. ......++.++++++.+++.+ ..++. +..||||||
T Consensus 363 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~ 433 (520)
T TIGR03269 363 AKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGER 433 (520)
T ss_pred HhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHH
Confidence 2456899999988889999999998754321 122333456788999999975 33443 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |.|||+++|++. .+.+.+|++++|.+ |+++..|+
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~ 511 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGD 511 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999765 899999999975 46678999999985 89998887
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 512 ~ 512 (520)
T TIGR03269 512 P 512 (520)
T ss_pred H
Confidence 5
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=615.91 Aligned_cols=464 Identities=22% Similarity=0.293 Sum_probs=347.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCCcc-------cceEEEEcCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD 239 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 239 (1433)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHHHhc-CCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc--
Q 000541 240 N--HIGEMTVRETLAFSARCQ-GVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-- 314 (1433)
Q Consensus 240 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-- 314 (1433)
. +.+.+||+|++.+..... +. .+. +....++.+++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGM----------RRE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653211 10 000 11233567899999975
Q ss_pred -cccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 000541 315 -CADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393 (1433)
Q Consensus 315 -~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 393 (1433)
..+..++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+.+||+++|+..++.
T Consensus 148 ~~~~~~~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYPH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 2355554 69999999999999999999999999999999999999999999998653 3566777999999999
Q ss_pred hhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcc
Q 000541 394 DLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFY 473 (1433)
Q Consensus 394 ~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~ 473 (1433)
++||+|++|++|++++.|+++++.+. +.. ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~------------------------------------~~~-----~~-------- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA------------------------------------PTH-----PY-------- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC------------------------------------CCC-----HH--------
Confidence 99999999999999999987654210 000 00
Q ss_pred cchhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000541 474 MGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRD 553 (1433)
Q Consensus 474 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~ 553 (1433)
.+.+ +...
T Consensus 253 ----------------------------------------~~~~----------------------------~~~~---- 260 (529)
T PRK15134 253 ----------------------------------------TQKL----------------------------LNSE---- 260 (529)
T ss_pred ----------------------------------------HHHH----------------------------HHhC----
Confidence 0000 0000
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCc
Q 000541 554 SITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGF 633 (1433)
Q Consensus 554 ~~~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 633 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHH
Q 000541 634 DPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQN 713 (1433)
Q Consensus 634 ~~~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~ 713 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 000541 714 AIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQ 793 (1433)
Q Consensus 714 al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~ 793 (1433)
... .+
T Consensus 261 ---------------~~~-----------------------------------------------~~------------- 265 (529)
T PRK15134 261 ---------------PSG-----------------------------------------------DP------------- 265 (529)
T ss_pred ---------------ccc-----------------------------------------------cc-------------
Confidence 000 00
Q ss_pred cccccCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeC
Q 000541 794 SNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRP 873 (1433)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 873 (1433)
. . . . .. .+.-++++|+++.++...+. .+...+.+.+|+|+|+++++
T Consensus 266 -------------~----~---~---~---~~------~~~~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~ 311 (529)
T PRK15134 266 -------------V----P---L---P---EP------ASPLLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRP 311 (529)
T ss_pred -------------c----c---c---C---CC------CCCcccccCcEEEeecCccc--cccccccceeeecceeEEcC
Confidence 0 0 0 0 00 00125677777766311000 00000124699999999999
Q ss_pred CeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc------cccceEEEeccCC--CCCCCCCHHHHHHHH
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE------TFARISGYCEQND--IHSPNVTVYESLLYS 945 (1433)
Q Consensus 874 Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~ 945 (1433)
||++||+||||||||||+++|+|..+ .+|+|+++|.++... .+++.++|++|+. .+++.+||.|++.+.
T Consensus 312 Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 312 GETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 99999999999999999999999873 489999999865321 1245689999996 477889999999886
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 000541 946 AWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024 (1433)
Q Consensus 946 a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~ 1024 (1433)
...+.. ..+....++.++++++.+++. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 389 ~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 389 LRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 533211 122333456688999999996 355554 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1025 IVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1025 ~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
.+++.|++++++ |+|||+++|++. .+.+.+|++++|.+ |+++..|+.
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999875 899999999974 46678999999985 899998875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=611.80 Aligned_cols=461 Identities=20% Similarity=0.285 Sum_probs=346.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIG 243 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 243 (1433)
++++|+|+|+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 356999999999999999999999999999999999998761 128999999988765332 246999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc-cccccC
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA-DTMVGD 322 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-dt~vg~ 322 (1433)
.+||+||+.++......+.. ... .+....++.+++.+||++.. +..++
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGR------MAY------------------------NAMYLRAKNLLRELQLDADNVTRPVG- 140 (500)
T ss_pred CCcHHHHHHhhccccccccc------cCH------------------------HHHHHHHHHHHHHcCCCCCcccCchh-
Confidence 99999999886432100000 000 00112356689999998654 44454
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.++||+|++|
T Consensus 141 ----~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 141 ----DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred ----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999864 3567777999999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhh
Q 000541 403 SDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDEL 482 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l 482 (1433)
++|++++.|+.+++.. ++..+
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 235 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDIIT--------------- 235 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHHHH---------------
Confidence 9999987664321100 00000
Q ss_pred cCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhh
Q 000541 483 RIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYT 562 (1433)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~ 562 (1433)
. +.
T Consensus 236 ---------------------------------~----------------------------~~---------------- 238 (500)
T TIGR02633 236 ---------------------------------M----------------------------MV---------------- 238 (500)
T ss_pred ---------------------------------H----------------------------Hh----------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHH
Q 000541 563 GALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFR 642 (1433)
Q Consensus 563 g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 642 (1433)
+.
T Consensus 239 ---------------------------------------------------------------------~~--------- 240 (500)
T TIGR02633 239 ---------------------------------------------------------------------GR--------- 240 (500)
T ss_pred ---------------------------------------------------------------------Cc---------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcC
Q 000541 643 QYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLG 722 (1433)
Q Consensus 643 ~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~ 722 (1433)
+ .+.
T Consensus 241 ------------------------------------------------~---~~~------------------------- 244 (500)
T TIGR02633 241 ------------------------------------------------E---ITS------------------------- 244 (500)
T ss_pred ------------------------------------------------c---ccc-------------------------
Confidence 0 000
Q ss_pred CcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCC
Q 000541 723 NSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTG 802 (1433)
Q Consensus 723 ~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1433)
. . + .
T Consensus 245 -----~-------------------------------------------------~-~----------~----------- 248 (500)
T TIGR02633 245 -----L-------------------------------------------------Y-P----------H----------- 248 (500)
T ss_pred -----c-------------------------------------------------c-c----------c-----------
Confidence 0 0 0 0
Q ss_pred CccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEecc
Q 000541 803 GTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGV 882 (1433)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~ 882 (1433)
. . .+. ...-++++|+++.+.. .+++.+|+|+|+++++||++||+||
T Consensus 249 ------~--~----------~~~------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~ 294 (500)
T TIGR02633 249 ------E--P----------HEI------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGL 294 (500)
T ss_pred ------c--c----------cCC------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCC
Confidence 0 0 000 0013677787765420 0123589999999999999999999
Q ss_pred CCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCC--CC
Q 000541 883 SGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ----ETFARISGYCEQND---IHSPNVTVYESLLYSAWLRLP--LE 953 (1433)
Q Consensus 883 sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~--~~ 953 (1433)
|||||||||++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.+...-... ..
T Consensus 295 NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~ 373 (500)
T TIGR02633 295 VGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMR 373 (500)
T ss_pred CCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCc
Confidence 999999999999998762 248999999987642 12345689999995 578899999999875321110 01
Q ss_pred CChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 000541 954 VDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032 (1433)
Q Consensus 954 ~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~ 1032 (1433)
......++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 448 (500)
T TIGR02633 374 IDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448 (500)
T ss_pred CCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 122333456788999999964 455543 47999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1033 ~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
++++|.|||+++|+++ .+.+.+|++++|.+ |+++..++..
T Consensus 449 l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 449 LAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9888999999999975 56778999999985 8898877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=609.83 Aligned_cols=451 Identities=21% Similarity=0.308 Sum_probs=343.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc----ccceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV----PQRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 46999999999999999999999999999999999999887 999999998875332 13569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++......+ . ... .+....++.+++.+||++..+..++
T Consensus 94 ~tv~~~l~~~~~~~~~~----~---~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (501)
T PRK11288 94 MTVAENLYLGQLPHKGG----I---VNR------------------------RLLNYEAREQLEHLGVDIDPDTPLK--- 139 (501)
T ss_pred CCHHHHHHhcccccccC----C---CCH------------------------HHHHHHHHHHHHHcCCCCCcCCchh---
Confidence 99999999863210000 0 000 0011235668999999876666554
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+++||.++|+..++.++||+|++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999854 356777799999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhhcC
Q 000541 405 GQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRI 484 (1433)
Q Consensus 405 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~ 484 (1433)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999864421000 000000000
Q ss_pred ccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhhHH
Q 000541 485 PFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGA 564 (1433)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~g~ 564 (1433)
+.. ..
T Consensus 237 ------------------------------------------------------------~~~----~~----------- 241 (501)
T PRK11288 237 ------------------------------------------------------------MVG----RE----------- 241 (501)
T ss_pred ------------------------------------------------------------hcC----CC-----------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHHHH
Q 000541 565 LFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 565 lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 644 (1433)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcCCc
Q 000541 645 LLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNS 724 (1433)
Q Consensus 645 ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~~~ 724 (1433)
... .
T Consensus 242 --------------------------------------------------~~~--------------------------~ 245 (501)
T PRK11288 242 --------------------------------------------------IGD--------------------------I 245 (501)
T ss_pred --------------------------------------------------ccc--------------------------c
Confidence 000 0
Q ss_pred ccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCCCc
Q 000541 725 WRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGT 804 (1433)
Q Consensus 725 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1433)
+ .
T Consensus 246 ~------------------------------------------------------~------------------------ 247 (501)
T PRK11288 246 Y------------------------------------------------------G------------------------ 247 (501)
T ss_pred c------------------------------------------------------c------------------------
Confidence 0 0
Q ss_pred cccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCC
Q 000541 805 IQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 884 (1433)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sG 884 (1433)
. . + . . ..+..++++|+++. .+++|+|+++++||++||+||||
T Consensus 248 --~-~--~---~------~-------~~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~iiG~NG 289 (501)
T PRK11288 248 --Y-R--P---R------P-------LGEVRLRLDGLKGP-----------------GLREPISFSVRAGEIVGLFGLVG 289 (501)
T ss_pred --c-c--c---c------C-------CCCcEEEEeccccC-----------------CcccceeEEEeCCcEEEEEcCCC
Confidence 0 0 0 0 0 00113666776521 38999999999999999999999
Q ss_pred CChHHHHhhhcCCCCCCeeeeEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHHhcC-CCC--C
Q 000541 885 AGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ----ETFARISGYCEQND---IHSPNVTVYESLLYSAWLRL-PLE--V 954 (1433)
Q Consensus 885 aGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~-~~~--~ 954 (1433)
||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+++.+|+.|++.+...... +.. .
T Consensus 290 sGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 367 (501)
T PRK11288 290 AGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLI 367 (501)
T ss_pred CCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccccccc
Confidence 999999999999876 468999999986532 12245689999985 47889999999987532111 000 1
Q ss_pred ChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000541 955 DSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033 (1433)
Q Consensus 955 ~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~ 1033 (1433)
.....++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++
T Consensus 368 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 442 (501)
T PRK11288 368 NNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL 442 (501)
T ss_pred ChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 1222335678899999994 5666654 479999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 000541 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075 (1433)
Q Consensus 1034 ~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~ 1075 (1433)
++.|.|||+++||+. .+.+.+|++++|.+ |++++.|..++
T Consensus 443 ~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 443 AAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 888999999999975 57788999999985 89999998764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=657.70 Aligned_cols=211 Identities=23% Similarity=0.283 Sum_probs=177.8
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+++|+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999999852 12359999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.. ..+++.++||||++.+|.. |++|||... .+.+ ++.+.++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4578899999999988865 999999421 1112 3446778888777653 35666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 984 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~-p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
..+||||||||++|||||+++ |+||+||||||+||+.+...|++.|++.. +++|||+++|++ +....+|+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 467999999999999999995 89999999999999999999999999864 479999999986 5678899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-61 Score=654.56 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=177.0
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+++|+. +.+.+|+|||++|+|||.+||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999999852 12469999999999999999999999999999999999874 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+++.++||||++.+++. |+||||... . +..++.+.++++.+++.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~-------~---~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY-------E---QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc-------c---CCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 4567889999999999875 999999421 1 1123456778888887543 35556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl--~ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRV--EALLECQQFLVIEG 1426 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 479999999986 46677999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++.+|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=600.60 Aligned_cols=451 Identities=18% Similarity=0.293 Sum_probs=342.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIG 243 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 243 (1433)
++++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 457999999999999999999999999999999999999987 9999999998754321 356999999988899
Q ss_pred CCCHHHHHHHHHH-hcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 244 EMTVRETLAFSAR-CQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 244 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
.+||+||+.++.. ..+.. ... .+....++.+++.+||++..++.++
T Consensus 87 ~~tv~~~l~~~~~~~~~~~--------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 133 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMF--------VDQ------------------------DKMYRDTKAIFDELDIDIDPRAKVA- 133 (491)
T ss_pred CCCHHHHhhcccccccccc--------cCH------------------------HHHHHHHHHHHHHcCCCCCccCchh-
Confidence 9999999988532 10000 000 0011235668899999877776665
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .+++|+.++|+.+++.++||+|++|
T Consensus 134 ----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 134 ----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999864 3566777999999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhhhhhh
Q 000541 403 SDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDEL 482 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l 482 (1433)
++|+++..|+++++.. ++..+.
T Consensus 208 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~-------------- 229 (491)
T PRK10982 208 RDGQWIATQPLAGLTM--------------------------------------------DKIIAM-------------- 229 (491)
T ss_pred ECCEEEeecChhhCCH--------------------------------------------HHHHHH--------------
Confidence 9999998876543100 000000
Q ss_pred cCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhh
Q 000541 483 RIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYT 562 (1433)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~~~~~ 562 (1433)
+.. ..
T Consensus 230 --------------------------------------------------------------~~~----~~--------- 234 (491)
T PRK10982 230 --------------------------------------------------------------MVG----RS--------- 234 (491)
T ss_pred --------------------------------------------------------------HhC----CC---------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHhHHHH
Q 000541 563 GALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFR 642 (1433)
Q Consensus 563 g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 642 (1433)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHHhhcC
Q 000541 643 QYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLG 722 (1433)
Q Consensus 643 ~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~nef~~ 722 (1433)
+.
T Consensus 235 ----------------------------------------------------~~-------------------------- 236 (491)
T PRK10982 235 ----------------------------------------------------LT-------------------------- 236 (491)
T ss_pred ----------------------------------------------------cc--------------------------
Confidence 00
Q ss_pred CcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCC
Q 000541 723 NSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTG 802 (1433)
Q Consensus 723 ~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1433)
... +
T Consensus 237 ~~~------------------------------------------------------~---------------------- 240 (491)
T PRK10982 237 QRF------------------------------------------------------P---------------------- 240 (491)
T ss_pred ccc------------------------------------------------------c----------------------
Confidence 000 0
Q ss_pred CccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEecc
Q 000541 803 GTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGV 882 (1433)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~ 882 (1433)
. . . . . + .+..++++|+++.. +.+|+|||+.+++||++||+||
T Consensus 241 ---------~-~-~---~--~------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~ 282 (491)
T PRK10982 241 ---------D-K-E---N--K------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGL 282 (491)
T ss_pred ---------c-c-c---C--C------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecC
Confidence 0 0 0 0 0 0 01137788887641 1489999999999999999999
Q ss_pred CCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHH--hcCCCC
Q 000541 883 SGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQND---IHSPNVTVYESLLYSAW--LRLPLE 953 (1433)
Q Consensus 883 sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~--lr~~~~ 953 (1433)
||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.++..+.-. ......
T Consensus 283 nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (491)
T PRK10982 283 VGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVG 360 (491)
T ss_pred CCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccccc
Confidence 99999999999999887 4689999999876431 1245589999985 35788888877432210 000001
Q ss_pred -CChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 000541 954 -VDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031 (1433)
Q Consensus 954 -~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~ 1031 (1433)
.+....++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+
T Consensus 361 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~ 435 (491)
T PRK10982 361 LLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435 (491)
T ss_pred ccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHH
Confidence 11223345678889999885 344554 35799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1032 ~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
++.++|.|||+++|+++ ++.+.+|++++|.+ |+++..++..
T Consensus 436 ~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 436 ELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99888999999999975 56778999999985 8998777653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=592.75 Aligned_cols=447 Identities=20% Similarity=0.264 Sum_probs=329.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCC--C-
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNH--I- 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~--~- 242 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 45999999999999999999999999999999999999987 9999999976643221 2458999998532 1
Q ss_pred -----CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccc
Q 000541 243 -----GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD 317 (1433)
Q Consensus 243 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 317 (1433)
..+||+|++.+.. +....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhh
Confidence 1467777764310 00123456889999988777
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
..++ .|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ . +++||.++|+..++.++||
T Consensus 131 ~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 131 RRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCC
Confidence 7665 5999999999999999999999999999999999999999999999864 3 5667779999999999999
Q ss_pred eEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchh
Q 000541 398 DIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQK 477 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~ 477 (1433)
+|++|++|+++.+|+++++.+. +.+. ++
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~-------------------------~~------------ 231 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVA-------------------------QL------------ 231 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhh-------------------------hh------------
Confidence 9999999999999886654210 0000 00
Q ss_pred hhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 000541 478 VGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITD 557 (1433)
Q Consensus 478 ~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~ 557 (1433)
. .. .....
T Consensus 232 -----~------------------------------~~-------------------------------------~~~~~ 239 (490)
T PRK10938 232 -----A------------------------------HS-------------------------------------EQLEG 239 (490)
T ss_pred -----h------------------------------hh-------------------------------------hccCc
Confidence 0 00 00000
Q ss_pred chhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccH
Q 000541 558 GVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNV 637 (1433)
Q Consensus 558 ~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 637 (1433)
.
T Consensus 240 ---------------------------------------------------------------------------~---- 240 (490)
T PRK10938 240 ---------------------------------------------------------------------------V---- 240 (490)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHH
Q 000541 638 GRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVV 717 (1433)
Q Consensus 638 ~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~ 717 (1433)
. .+
T Consensus 241 -----------------------------------------------------~---~~--------------------- 243 (490)
T PRK10938 241 -----------------------------------------------------Q---LP--------------------- 243 (490)
T ss_pred -----------------------------------------------------c---cC---------------------
Confidence 0 00
Q ss_pred HhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccc
Q 000541 718 NEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEH 797 (1433)
Q Consensus 718 nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 797 (1433)
... ..
T Consensus 244 ------------~~~----------------------------------------------------------~~----- 248 (490)
T PRK10938 244 ------------EPD----------------------------------------------------------EP----- 248 (490)
T ss_pred ------------ccc----------------------------------------------------------cc-----
Confidence 000 00
Q ss_pred cCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEE
Q 000541 798 DNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLT 877 (1433)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 877 (1433)
. . + . ... .....++++|+++.++ ++.+|+|+|+.+++||++
T Consensus 249 -~-------~----~---~-----~~~------~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~ 289 (490)
T PRK10938 249 -S-------A----R---H-----ALP------ANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHW 289 (490)
T ss_pred -c-------c----c---c-----ccC------CCCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEE
Confidence 0 0 0 0 000 0011378899988763 235999999999999999
Q ss_pred EEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHHh--c
Q 000541 878 ALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ----ETFARISGYCEQNDIHSP--NVTVYESLLYSAWL--R 949 (1433)
Q Consensus 878 ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~~~~--~lTv~E~l~f~a~l--r 949 (1433)
+|+||||||||||+++|+|..++ ..+|+|+++|.+... ...++.+||++|++.+++ ..|++|++.+.... .
T Consensus 290 ~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (490)
T PRK10938 290 QIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIG 368 (490)
T ss_pred EEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccc
Confidence 99999999999999999997531 148999999976421 123456899999875543 35777766543211 1
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 000541 950 LPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028 (1433)
Q Consensus 950 ~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~ 1028 (1433)
..... ....++.++++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++
T Consensus 369 ~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 442 (490)
T PRK10938 369 IYQAV-SDRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR 442 (490)
T ss_pred cccCC-CHHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 11111 1223456789999999986 666553 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC-CEEEEEecCCCHHHHH-HhcceeEEecCcEEEEE
Q 000541 1029 TVRNTVDTG-RTVVCTIHQPSIDIVE-AFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 1029 ~l~~~~~~g-~tvi~t~Hqp~~~~~~-~fd~~~ll~~gG~~~y~ 1070 (1433)
.|++++++| .|||+++|+++ ++.+ .+|++++|.+ |+++..
T Consensus 443 ~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 443 FVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 999998776 47999999975 3445 4789999986 777664
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-58 Score=575.83 Aligned_cols=201 Identities=23% Similarity=0.318 Sum_probs=163.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999998763 2469999999999999999999999999999999999876 46899999542
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000541 915 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGq 992 (1433)
..+||++|+. .+++.+||+|++.+....+. .... ....+++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67889999999987643211 1111 123456899999863 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI-YVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~-y~G 1071 (1433)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||+++|++. .+...+|++++|.+||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 4667789999998767776 444
Q ss_pred C
Q 000541 1072 S 1072 (1433)
Q Consensus 1072 ~ 1072 (1433)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=505.44 Aligned_cols=471 Identities=24% Similarity=0.332 Sum_probs=366.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCccCCCCccc-------ceEEEEcC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRVSGRVTYNGHDMDEFVPQ-------RTAAYISQ 237 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 237 (1433)
+...++++|||.|++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 346799999999999999999999999999999999999976 245689999999997554322 36999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcc
Q 000541 238 HD--NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVC 315 (1433)
Q Consensus 238 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 315 (1433)
++ .+-|-.|+...|.-..++... +++ ..+..++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~------------------------~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSR------------------------AAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccH------------------------HHHHHHHHHHHHHcCCCch
Confidence 96 456777888877766655311 111 1123345668899999876
Q ss_pred ccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 000541 316 ADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL 395 (1433)
Q Consensus 316 ~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 395 (1433)
.... +.+...|||||||||.||.||+.+|++||-||||++||.....+|++.|+++.... +..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 46778999999999999999999999999999999999999999999999997655 67788899999999999
Q ss_pred cCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccc
Q 000541 396 FDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMG 475 (1433)
Q Consensus 396 ~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~ 475 (1433)
+|+|+||.+|+|+++|+.+++.. .|.+ ||
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pY------------------ 253 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PY------------------ 253 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hH------------------
Confidence 99999999999999999877632 1110 00
Q ss_pred hhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 000541 476 QKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSI 555 (1433)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~ 555 (1433)
. |..+. .
T Consensus 254 --------------------------T------------r~Ll~----------------------------a------- 260 (534)
T COG4172 254 --------------------------T------------RKLLA----------------------------A------- 260 (534)
T ss_pred --------------------------H------------HHHHh----------------------------c-------
Confidence 0 00000 0
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccc
Q 000541 556 TDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDP 635 (1433)
Q Consensus 556 ~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 635 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHH
Q 000541 636 NVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAI 715 (1433)
Q Consensus 636 ~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al 715 (1433)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccc
Q 000541 716 VVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSN 795 (1433)
Q Consensus 716 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 795 (1433)
.+.+.
T Consensus 261 ------------eP~g~--------------------------------------------------------------- 265 (534)
T COG4172 261 ------------EPSGD--------------------------------------------------------------- 265 (534)
T ss_pred ------------CCCCC---------------------------------------------------------------
Confidence 00000
Q ss_pred cccCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCe
Q 000541 796 EHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGV 875 (1433)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 875 (1433)
+ .+ ..+..+..++.+|+...++.+..+-.. ..+...+++|||++.++||
T Consensus 266 ----------------~----------~p---~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gq 314 (534)
T COG4172 266 ----------------P----------PP---LPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQ 314 (534)
T ss_pred ----------------C----------CC---CCCCCCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCC
Confidence 0 00 000112345666666555544322211 1234579999999999999
Q ss_pred EEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHH
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ------ETFARISGYCEQND--IHSPNVTVYESLLYSAW 947 (1433)
Q Consensus 876 ~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~ 947 (1433)
.+||+|.||||||||-.+|.++.. .+|+|.++|+++.. ...++.+-.|+||+ .+.|.+||.|-+.-+..
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 999999999999999999999875 35999999998753 23567788999997 46799999999987766
Q ss_pred hcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 000541 948 LRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027 (1433)
Q Consensus 948 lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~ 1027 (1433)
...| ..+..++++++.++++.+||.+-. .... ...+|||||||++|||||+-+|++++||||||.||-.-+.+|+
T Consensus 392 vh~~-~ls~~eR~~rv~~aL~EVGLDp~~--r~RY--PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv 466 (534)
T COG4172 392 VHEP-KLSAAERDQRVIEALEEVGLDPAT--RNRY--PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466 (534)
T ss_pred hcCC-CCCHHHHHHHHHHHHHHcCCChhH--hhcC--CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHH
Confidence 6544 457788999999999999998632 2223 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1028 RTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1028 ~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++||++.++ |.+-++++||.. -+-.++|++++|.+ |++|..|+.
T Consensus 467 ~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 467 DLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 999999755 899999999964 35667899999985 899999996
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=571.37 Aligned_cols=198 Identities=17% Similarity=0.268 Sum_probs=164.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 489999998773 2359999999999999999999999999999999999876 45899999883
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000541 915 KQETFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgG 991 (1433)
+.+||++|+.. +.+.+||+|++.+.. .+ ...++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 456799999986421 11 11234577899999984 455554 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI-YV 1070 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~-y~ 1070 (1433)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||+++|++. .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999987 459999999975 46677899999986 6776 77
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=570.48 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=163.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 488999988763 2469999999999999999999999999999999999876 45899999542
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000541 915 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGq 992 (1433)
..+||++|+. .+++.+||.|++.+...... .... +...+++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999986 47788999999987642211 1111 223457899999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI-YVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~-y~G 1071 (1433)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .|||+++|++. .+...+|++++|.+||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 48999999974 4666789999998767776 444
Q ss_pred C
Q 000541 1072 S 1072 (1433)
Q Consensus 1072 ~ 1072 (1433)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=552.00 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=172.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478889887663 1 24899999999999999999999999999999999887 458999886
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
..++|++|+..+.+.+||+|++.+.... . . ....++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~--~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD---L--G---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh---c--C---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1479999998888899999999874211 1 1 1224678999999987777654 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999864 899999999964 4566789999995 477777774
Q ss_pred CcC---hhHHHHHHhhC
Q 000541 1074 GRH---SSHLIKYFEGI 1087 (1433)
Q Consensus 1074 ~~~---~~~~~~yF~~~ 1087 (1433)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 332 12345566665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=552.02 Aligned_cols=197 Identities=21% Similarity=0.348 Sum_probs=160.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999998773 2469999999999999999999999999999999999886 56899999742
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000541 915 KQETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgG 991 (1433)
..+||++|+. .+.+..|+.+++.- . . .......+.++++.+++.+ ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34566678777531 1 1 1122345778899999863 455543 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI-YV 1070 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~-y~ 1070 (1433)
|||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++ . .|||+++||+. .+...+|++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999974 46677999999985 7876 77
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=550.83 Aligned_cols=201 Identities=24% Similarity=0.351 Sum_probs=161.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 488999998763 2469999999999999999999999999999999999876 46899998 5321
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000541 915 KQETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSgGq 992 (1433)
.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 578899999999875321 0 111 1123467788888885 3445543 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEE-EEEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE-IYVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~-~y~G 1071 (1433)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++||+. .+...+|+++++..+|++ .|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999964 466779999999733555 4555
Q ss_pred C
Q 000541 1072 S 1072 (1433)
Q Consensus 1072 ~ 1072 (1433)
.
T Consensus 522 ~ 522 (635)
T PRK11147 522 G 522 (635)
T ss_pred C
Confidence 4
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=513.27 Aligned_cols=455 Identities=21% Similarity=0.355 Sum_probs=354.7
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc----ceEEEEc
Q 000541 161 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYIS 236 (1433)
Q Consensus 161 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 236 (1433)
...++.+..++|+|||+.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++..-..++ .-|+.|.
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 3456667789999999999999999999999999999999999999998 99999999988755553 3589999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc
Q 000541 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316 (1433)
Q Consensus 237 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 316 (1433)
|+..+.|+|||.|||.++...... . .-+.+ .+....+..+|+.+|++...
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~---~---g~id~------------------------~~m~~~A~~~l~~lg~~~~~ 139 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRR---F---GLIDR------------------------KAMRRRARELLARLGLDIDP 139 (500)
T ss_pred echhccCCccHHHHhhcccccccC---C---CccCH------------------------HHHHHHHHHHHHHcCCCCCh
Confidence 999999999999999887543210 0 00111 11223456789999997668
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
++.|++ ||+||||.|.||+||..++++++|||||+.|+...+..+++.++++.. ++..||.|+|..+|++++|
T Consensus 140 ~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 140 DTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIA 212 (500)
T ss_pred hhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhc
Confidence 888886 999999999999999999999999999999999999999999999853 5888999999999999999
Q ss_pred CeEEEecCCeEEEecCh-hHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccc
Q 000541 397 DDIILISDGQIVYQGPR-EHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMG 475 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~ 475 (1433)
|+|.||.||+++..++. .+. +.+++.+
T Consensus 213 DritVlRDG~~v~~~~~~~~~--------------------------------------------~~~~lv~-------- 240 (500)
T COG1129 213 DRITVLRDGRVVGTRPTAAET--------------------------------------------SEDELVR-------- 240 (500)
T ss_pred CEEEEEeCCEEeeecccccCC--------------------------------------------CHHHHHH--------
Confidence 99999999999876652 211 0000000
Q ss_pred hhhhhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 000541 476 QKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSI 555 (1433)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~ 555 (1433)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccc
Q 000541 556 TDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDP 635 (1433)
Q Consensus 556 ~~~~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 635 (1433)
.|+|=.
T Consensus 241 -------------------------------------------------------------------------~MvGr~- 246 (500)
T COG1129 241 -------------------------------------------------------------------------LMVGRE- 246 (500)
T ss_pred -------------------------------------------------------------------------HhhCcc-
Confidence 000000
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHH
Q 000541 636 NVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAI 715 (1433)
Q Consensus 636 ~~~~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al 715 (1433)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccc
Q 000541 716 VVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSN 795 (1433)
Q Consensus 716 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 795 (1433)
.. ..|
T Consensus 247 ----~~-~~~---------------------------------------------------------------------- 251 (500)
T COG1129 247 ----LE-DLF---------------------------------------------------------------------- 251 (500)
T ss_pred ----hh-hhc----------------------------------------------------------------------
Confidence 00 000
Q ss_pred cccCCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCe
Q 000541 796 EHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGV 875 (1433)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 875 (1433)
+ . . . .. ...+..+++++++.. ..++||||++++||
T Consensus 252 ----------------~---~-~-~-~~------~~~~~~l~v~~l~~~-----------------~~~~dvSf~vr~GE 286 (500)
T COG1129 252 ----------------P---E-P-P-EE------GIGEPVLEVRNLSGG-----------------GKVRDVSFTVRAGE 286 (500)
T ss_pred ----------------c---c-c-c-cc------CCCCcEEEEecCCCC-----------------CceeCceeEEeCCc
Confidence 0 0 0 0 00 001123555665431 15789999999999
Q ss_pred EEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccC---CCCCCCCCHHHHHHHHHHh
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQN---DIHSPNVTVYESLLYSAWL 948 (1433)
Q Consensus 876 ~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~---d~~~~~lTv~E~l~f~a~l 948 (1433)
++||-|-=|||+|-|+++|.|..+ ..+|+|.+||++.... ..+..++|||.| +-+++.++|.||+.++...
T Consensus 287 IlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~ 364 (500)
T COG1129 287 ILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLR 364 (500)
T ss_pred EEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhh
Confidence 999999999999999999999665 4589999999976532 344578999987 4578899999999887332
Q ss_pred cCC-C-CCChhHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 000541 949 RLP-L-EVDSPTRKMFIEEVMELVELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1025 (1433)
Q Consensus 949 r~~-~-~~~~~~~~~~v~~vl~~l~l~~~~-~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~ 1025 (1433)
+.. . -.+....++.+++..+.|++..-. +.. +..||||++|||.||+.|..+|+||+|||||.|.|.-+..+
T Consensus 365 ~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~e 439 (500)
T COG1129 365 RFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE 439 (500)
T ss_pred hhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHH
Confidence 322 1 234445556788889988885432 222 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 1026 VMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 1026 i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|.+++++++++|.+||+++-+. .|+...+|||++|.+ |+++-.
T Consensus 440 Iy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 440 IYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred HHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999986 488999999999985 888763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=535.25 Aligned_cols=200 Identities=20% Similarity=0.291 Sum_probs=157.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +++.+|+|+|+.|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 588999998873 12359999999999999999999999999999999999877 46899998762
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~~LSgGqr 993 (1433)
..+||++|+. ...+++.++.........+. . .++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~----~~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-V----PEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcCC-C----CHHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 34456666643221111111 1 1245678899999973 44443 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE-EEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI-YVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~-y~G~ 1072 (1433)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. . .|||+++|++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999975 46667899999985 7887 7675
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=504.36 Aligned_cols=221 Identities=26% Similarity=0.313 Sum_probs=172.2
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCC
Q 000541 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 166 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 245 (1433)
.+.+++++|+|+.+.+|+.++|+|+||||||||||+|+|.+.|+ +|+|...+. -.++|++|++...+..
T Consensus 13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEK 81 (530)
T ss_pred eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCc
Confidence 35678999999999999999999999999999999999999998 999988652 3699999999899999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCCh---HHHH-HHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDI---DVFM-KAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
||.+.+.-+.... .+...++.... ...++.+. +.+. .....++.+.+..++.+|..||++.. ++.++
T Consensus 82 tv~~~v~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~ 152 (530)
T COG0488 82 TVLDYVIEGFGEL-----RELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS 152 (530)
T ss_pred cHHHHHHhhhHHH-----HHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh
Confidence 9999998765321 12222222111 11111111 1111 11223334556678889999999887 77776
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
.||||||.||+||++|+.+|++|+|||||++||..+...+-+.|++. .+ ++|+++|++...-+.|++|+-
T Consensus 153 -----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 153 -----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred -----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEE
Confidence 49999999999999999999999999999999999988888888753 45 677799999999999999999
Q ss_pred ecCCeE-EEecChhHH
Q 000541 402 ISDGQI-VYQGPREHV 416 (1433)
Q Consensus 402 L~~G~i-v~~G~~~~~ 416 (1433)
++.|++ .|.|..+..
T Consensus 223 ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 223 LDRGKLTPYKGNYSSY 238 (530)
T ss_pred ecCCceeEecCCHHHH
Confidence 999987 577766543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=463.92 Aligned_cols=462 Identities=22% Similarity=0.324 Sum_probs=360.3
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc----ceEEEEcCC
Q 000541 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYISQH 238 (1433)
Q Consensus 163 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~ 238 (1433)
.++.....+++|||+++++||+.+|+|.||||||||+++|.|.++|+ +|+|.++|++..-..|. --||.|.||
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 34556788999999999999999999999999999999999999998 99999999998655553 358999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
..+++++||.|||..+..-... ..+.+ .+....++.+.+..||+-..|.
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~-------~~~~~------------------------~~~~~~i~~l~~~yGl~vdp~~ 136 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKG-------GLIDR------------------------RQARARIKELSERYGLPVDPDA 136 (501)
T ss_pred cccccccchhhhhhhcCccccc-------cccCH------------------------HHHHHHHHHHHHHhCCCCCccc
Confidence 9999999999999987642100 00111 1223456778999999999999
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
+|++ ||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|++++. .+.+||.|+|-..|+.+.||+
T Consensus 137 ~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDr 209 (501)
T COG3845 137 KVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADR 209 (501)
T ss_pred eeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCe
Confidence 9986 999999999999999999999999999999999999999999999875 467788899999999999999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCCchhhhhhhhccCCCCccCCHHHHHHHHHhcccchhh
Q 000541 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKV 478 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~ 478 (1433)
+.||..|+++..-++ . + ..+.+++++
T Consensus 210 vTVLR~Gkvvgt~~~--~--------------~---------------------------~~t~~ela~----------- 235 (501)
T COG3845 210 VTVLRRGKVVGTVDP--V--------------A---------------------------ETTEEELAE----------- 235 (501)
T ss_pred eEEEeCCeEEeeecC--C--------------C---------------------------CCCHHHHHH-----------
Confidence 999999998643210 0 0 000011000
Q ss_pred hhhhcCccccccccccccccCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 000541 479 GDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDG 558 (1433)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtlf~~~~~~~~~~~~~ 558 (1433)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHhhhcchhhHhhhcCCcccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCccccHh
Q 000541 559 VIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVG 638 (1433)
Q Consensus 559 ~~~~g~lff~il~~~~~~~~e~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 638 (1433)
+ |+|=.
T Consensus 236 -------------l---------------------------------------------------------MvG~~---- 241 (501)
T COG3845 236 -------------L---------------------------------------------------------MVGRE---- 241 (501)
T ss_pred -------------H---------------------------------------------------------hcCCc----
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHhHHHHHHHHHHHhcccccccchhhhHHHHHhHChHHHHHHHHHHH
Q 000541 639 RLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVN 718 (1433)
Q Consensus 639 ~ff~~~ll~~l~~~~~~~lf~~i~a~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~W~~~isP~~y~~~al~~n 718 (1433)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T COG3845 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCCchHHHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccccccc
Q 000541 719 EFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHD 798 (1433)
Q Consensus 719 ef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~g~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 798 (1433)
+.
T Consensus 242 ---------v~--------------------------------------------------------------------- 243 (501)
T COG3845 242 ---------VV--------------------------------------------------------------------- 243 (501)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCccccccCCCcchhhhhccccccCccccCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEE
Q 000541 799 NRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTA 878 (1433)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 878 (1433)
... . .. .. .| .+..++++|++...+. ....+++|||+++.||++|
T Consensus 244 --------~~~------~-~~--~~-----~p-g~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvG 288 (501)
T COG3845 244 --------LRV------V-KP--PS-----TP-GEVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVG 288 (501)
T ss_pred --------ccc------c-cC--CC-----CC-CCeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEE
Confidence 000 0 00 00 00 1235778888764321 1357999999999999999
Q ss_pred EeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC----Ccc-cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcC
Q 000541 879 LMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK----KQE-TFARISGYCEQND---IHSPNVTVYESLLYSAWLRL 950 (1433)
Q Consensus 879 i~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~----~~~-~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~ 950 (1433)
|.|..|-|-+.|+.+|+|..+ +.+|+|.++|.+. +.. ..+..++|||.|. -+.+.+|+.||+.+...-+-
T Consensus 289 IAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~ 366 (501)
T COG3845 289 IAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366 (501)
T ss_pred EEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence 999999999999999999876 3469999999986 222 2234689999985 34689999999977643221
Q ss_pred CC----CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 000541 951 PL----EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026 (1433)
Q Consensus 951 ~~----~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i 1026 (1433)
|. -.+....+++.+++++.++.....-.. ..+.||||++||+-+||||.++|++|+..+||.|||..+.+.|
T Consensus 367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I 442 (501)
T COG3845 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHH
Confidence 11 234456677888999998886332211 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1027 MRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1027 ~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
.+.|.+.++.|+.|++++-+.+ ++++++|++.+|.+ |+++...++.
T Consensus 443 ~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 443 HERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred HHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 9999999999999999999986 79999999999995 8998877764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=371.56 Aligned_cols=227 Identities=26% Similarity=0.429 Sum_probs=192.2
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC----cccceEEEEcC
Q 000541 162 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF----VPQRTAAYISQ 237 (1433)
Q Consensus 162 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q 237 (1433)
+.+..++..+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecc
Confidence 345566788999999999999999999999999999999999999998 99999999765321 23578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccc
Q 000541 238 HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD 317 (1433)
Q Consensus 238 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 317 (1433)
+.++||++||.||+..+...- ...++ .++......+|+.+||.+.+|
T Consensus 85 ~fnLFPHlTvleNv~lap~~v---------~~~~k------------------------~eA~~~A~~lL~~VGL~~ka~ 131 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKV---------KKLSK------------------------AEAREKALELLEKVGLADKAD 131 (240)
T ss_pred cccccccchHHHHHHhhhHHH---------cCCCH------------------------HHHHHHHHHHHHHcCchhhhh
Confidence 999999999999999875321 01111 123344567899999999988
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
... ..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .+.|.+.++|....+.+.+|
T Consensus 132 ~yP-----~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 132 AYP-----AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred hCc-----cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHhhh
Confidence 665 46999999999999999999999999999999999999999999999986 35777779999999999999
Q ss_pred eEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHh
Q 000541 398 DIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQE 439 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~e 439 (1433)
||+.|++|+++.+|+++++ |..|.+....+|+..
T Consensus 205 rviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 205 RVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999999999887 345666666677654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=364.84 Aligned_cols=214 Identities=26% Similarity=0.367 Sum_probs=187.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|++.++ ++.++|+|||++|++||+++|+|||||||||||++|.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6788888776 35689999999999999999999999999999999999987 56999999997543
Q ss_pred c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 Q----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
. ...|+.+|+|+|+..+||++||.||+..+-..- ...++++.++...++|+.+||.+.+|.. ...||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2 346788999999999999999999998864322 2345667777888999999999988876 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|||||+|||||+.+|+++++|||||.|||+....+.+.+++++++|.|.||+||.... .-+.+||++.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998543 4567899999985 8999999
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=392.44 Aligned_cols=203 Identities=19% Similarity=0.262 Sum_probs=158.8
Q ss_pred ceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCc
Q 000541 833 PHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912 (1433)
Q Consensus 833 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 912 (1433)
|..+.++|+++.++. +..++++++|-+.+++.+|++|||||||||||+++.|... +..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 346899999998752 2258999999999999999999999999999999999887 45787754332
Q ss_pred cCCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 913 PKKQETFARISGYCEQN--DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 913 ~~~~~~~~~~~gyv~Q~--d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ..++-.|+ +.+.-..++-|+++=. ..++.+.+.+..++..+||..-.+... .+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 1 22344443 3344456777776421 111334556788899999985444331 568999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||+||.+|+.++..|.||+|||||+|||..+...+.+.|.+. ..+||.++||-. -|-+..+++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999988876 458999999864 366778999999999999998
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 875
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=392.51 Aligned_cols=224 Identities=32% Similarity=0.455 Sum_probs=194.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|++..+. .++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 366788887763 13679999999999999999999999999999999999988 4699999999876
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 915 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. ...+++++++++.++|.+.++.. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567789999999999999999999999999986543 34566799999999999855544 46899999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||+||+||+++|++|||||||+|||+.++..+++.|++++++| +||+++||+++ ++...||++++|.+ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999985 67777999999985 8999999
Q ss_pred CCCcChhHHHHHHhh
Q 000541 1072 SLGRHSSHLIKYFEG 1086 (1433)
Q Consensus 1072 ~~~~~~~~~~~yF~~ 1086 (1433)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 76 345555543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=410.13 Aligned_cols=216 Identities=22% Similarity=0.365 Sum_probs=186.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|+++.++. +++.+|+|+|+.+++||+++|+|||||||||||++|+|... +.+|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46899999987731 13569999999999999999999999999999999999987 569999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 914 KKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 914 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. .+.++.++.++++++.++|.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999876652 223344567889999999998877764 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|||||+||+||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++...+|++++|.+ |++++.|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999964 45667899999985 8999999
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 85
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=355.74 Aligned_cols=231 Identities=28% Similarity=0.413 Sum_probs=198.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.+++++|+.+. +.+.|++|||++|++||+++||||||+||||||+.|.|..+ +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 58899998765 45789999999999999999999999999999999999988 5699999999986
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000541 915 KQE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~~~ 987 (1433)
.+. ..++.+|+++|+-.+|..+||+||+.|.. |-....+++..++.+..-++.+||... .+.. .+.
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 431 35678999999999999999999998854 333445666777778788888999876 4543 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||+|||+++||||+.+|+|||+||||+||||.++..+-++|+++.++ |.|+|++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877 999999999975 68899999999996 89
Q ss_pred EEEEcCCCc----ChhHHHHHHhhCCC
Q 000541 1067 EIYVGSLGR----HSSHLIKYFEGIRG 1089 (1433)
Q Consensus 1067 ~~y~G~~~~----~~~~~~~yF~~~~g 1089 (1433)
++..|++.+ ...-+.+||.+..+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 999999743 12346778887643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=366.38 Aligned_cols=218 Identities=27% Similarity=0.401 Sum_probs=186.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ .+ .+|+|||+++++|++++|+||||||||||+++|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999999885 12 59999999999999999999999999999999999877 5699999999886
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 915 KQETFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
.+..-+..+|||||... ....+||+|-+..+..-+.+. ....+..++.++++|+.+|+.+++|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 65443568999999642 234479999998764333221 11123336779999999999999999875 69999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|+|||-|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+++.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999999999999999987 5889999999997 5899999
Q ss_pred CCCc
Q 000541 1072 SLGR 1075 (1433)
Q Consensus 1072 ~~~~ 1075 (1433)
++..
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9854
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=366.94 Aligned_cols=225 Identities=28% Similarity=0.390 Sum_probs=195.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHDN 240 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 240 (1433)
+...+|+|||+.|++|++.+|+|+||||||||++++.++..|+ +|+|.++|+++..... ++.||+|+|+.+
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 9999999988766542 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
++...||.||++|+.+..+.. + .+...++.++|+.+||++.+|...
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------k------------------------~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------K------------------------AEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999998876531 1 123345778999999999887655
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|++.|+++.+.. +.||+.|+|.++-+.+.||+|.
T Consensus 140 -----~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 140 -----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred -----hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 4699999999999999999999999999999999999999999999987755 6778889999999999999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhCC
Q 000541 401 LISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTS 442 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evts 442 (1433)
+|++|+++++|+..++. ..|.+.-..+|+.+...
T Consensus 214 vm~~G~lvE~G~v~~vF--------~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEVF--------ANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHhh--------cCcchHHHHHHHHhhcc
Confidence 99999999999999883 45666556666665543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=369.71 Aligned_cols=218 Identities=29% Similarity=0.430 Sum_probs=188.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++.+|+++.|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367899999884 4579999999999999999999999999999999999887 5689999999986
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. +.++|.++|+||.....+.+||+|.+.++..-.... ....++.++.++++++.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 457789999999998889999999998874322111 1122334457899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||+.|||||+++|+||+||||||+||...+..++++++++++ +|+|||+++||++. ....+|++++|++ |++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999995 49999999999874 6778899999985 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99975
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=366.73 Aligned_cols=219 Identities=25% Similarity=0.345 Sum_probs=190.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. |.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5788888665321 1124579999999999999999999999999999999999887 56999999997654
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
. ...|+.+|+++|+..++.+.||+||+.|...+.. .++++++++|.++++.+||.+.++.. ..+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 2457889999999999999999999999877653 56788899999999999999888775 35899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
|||||||+|||||+.+|+||++|||||.|||.+...|+++|+++.++ |.||++++|+++ -+-..|||+.+|.+ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999866 999999999853 24566899999985 8999
Q ss_pred EEcCCC
Q 000541 1069 YVGSLG 1074 (1433)
Q Consensus 1069 y~G~~~ 1074 (1433)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999863
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=355.07 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=189.2
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCC
Q 000541 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHD 239 (1433)
Q Consensus 163 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 239 (1433)
+++..++++++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||.++.+... ++.+|||-|.-
T Consensus 8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 34455778999999999999999999999999999999999999998 9999999999877654 68899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+||++||.||+.+-..++++.. ++.+.+++++|+.+||+.. .
T Consensus 85 gLFPh~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~ 127 (309)
T COG1125 85 GLFPHLTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---E 127 (309)
T ss_pred ccCCCccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---H
Confidence 99999999999999877765421 1233457889999999752 1
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
..+++.+.|||||+|||.+||||+.+|+|++||||+++|||-++.++-+.++++.+.. ++|||.++|+.+|++.++|||
T Consensus 128 ~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 128 YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceE
Confidence 2346677899999999999999999999999999999999999999999999986655 567777999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
.+|++|+++..+++++++.
T Consensus 207 ~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 207 AVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred EEecCCeEEEeCCHHHHHh
Confidence 9999999999999999874
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=381.93 Aligned_cols=217 Identities=31% Similarity=0.460 Sum_probs=194.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc-ceEEEEcCCCCCCCCCCHHH
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 249 (1433)
Q Consensus 171 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 249 (1433)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998775 78999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCc
Q 000541 250 TLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329 (1433)
Q Consensus 250 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 329 (1433)
||.|+.+.++.. .++.+.+++++.+.|+|++..|.+. ++||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~P-----~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRKP-----LQLS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 999999876531 1123456778999999999988665 4699
Q ss_pred hhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000541 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409 (1433)
Q Consensus 330 GGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 409 (1433)
|||||||++||||+.+|++++||||+|.||+..+.++...++++.+.. ++|+|.++|+..|+..++|+|.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999975544 6777779999999999999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCChhhHHH
Q 000541 410 QGPREHVLEFFKFMGFECPKRKGVADFLQ 438 (1433)
Q Consensus 410 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 438 (1433)
.|++.++. ..|.+.-+|+|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4677777777763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=384.19 Aligned_cols=227 Identities=30% Similarity=0.449 Sum_probs=200.2
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCC
Q 000541 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHI 242 (1433)
Q Consensus 164 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 242 (1433)
+..+...+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+|
T Consensus 13 k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccC
Confidence 3345678999999999999999999999999999999999999998 9999999999998776 47899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
|+|||+||+.|+.+.++... ..+...+++++|+.++|++.++..+
T Consensus 90 PHltV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~p-- 134 (352)
T COG3842 90 PHMTVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRKP-- 134 (352)
T ss_pred CCCcHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhCh--
Confidence 99999999999987432110 0123346788999999998776554
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
..|||||||||+|||||+.+|++|+||||.|+||..-+.++..-++++.+.. +.|.|.++|+..|+..++|+|.+|
T Consensus 135 ---~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm 210 (352)
T COG3842 135 ---HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVM 210 (352)
T ss_pred ---hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEc
Confidence 5699999999999999999999999999999999999999999999988766 667777999999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhh
Q 000541 403 SDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ev 440 (1433)
++|+|.-.|+++++ |..|...-+|+|+-+.
T Consensus 211 ~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 211 NDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred cCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 99999999999998 5578888889998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=365.73 Aligned_cols=211 Identities=33% Similarity=0.475 Sum_probs=182.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc---ceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 244 (1433)
++.+|+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+...+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 567999999999999999999999999999999999999997 99999999999876653 789999999888899
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+|-+.++..-. .......+ .+....++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~-----~~~~~~~~-------------------------~~D~~~v~~aL~~~~~~~la~r~~~--- 137 (258)
T COG1120 91 LTVYELVLLGRYPH-----LGLFGRPS-------------------------KEDEEIVEEALELLGLEHLADRPVD--- 137 (258)
T ss_pred cEEeehHhhcCCcc-----cccccCCC-------------------------HhHHHHHHHHHHHhCcHHHhcCccc---
Confidence 99999999874310 00000001 1112357788999999999987776
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||.|||||+++|++++||||||+||...+.++++.++++++. .+.|+|+++|+.+.+..+||++++|++
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999999864 456677789999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|+++.+|+++++.
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=356.53 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=180.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.+.++++++.+. ...+|+|+|++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 467888887764 2579999999999999999999999999999999999988 5699999999987
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
. .....+|||+|++.++|-+||+||+.++...+. .+++++++++++.++.+||.+..|.. ...|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 234568999999999999999999999876653 34566677899999999999999886 4589999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|..+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999875 4899999999975 677789999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=362.69 Aligned_cols=227 Identities=29% Similarity=0.449 Sum_probs=190.7
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCc---cCCCCcc-cceEEEEcCCC
Q 000541 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGH---DMDEFVP-QRTAAYISQHD 239 (1433)
Q Consensus 164 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d 239 (1433)
+......+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||. +.+.... .|.+|||+|+-
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEech
Confidence 3445567899999999999999999999999999999999999998 999999999 6555333 47899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+|++|||.+||+|+.+++.. .+.+ .+.+..++++|+.+.|++.++
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~-----~p~~---------------------------~~~r~rv~elL~lvqL~~la~-- 132 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKE-----RPSE---------------------------AEIRARVEELLRLVQLEGLAD-- 132 (345)
T ss_pred hhcccchHHhhhhhccccccc-----CCCh---------------------------hhHHHHHHHHHHHhcccchhh--
Confidence 999999999999999876521 0001 122345677899999987665
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+++..|||||||||++||||+..|++|+||||+++||...+.++-+.|+++.+..+ .+.+.++|+.+|++++||+|
T Consensus 133 ---ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrv 208 (345)
T COG1118 133 ---RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRV 208 (345)
T ss_pred ---cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceE
Confidence 55678999999999999999999999999999999999999999999999876554 45555999999999999999
Q ss_pred EEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHh
Q 000541 400 ILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQE 439 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~e 439 (1433)
++|++|+|...||++|+. ..|...-+..|+-+
T Consensus 209 vvl~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 209 VVLNQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred EEecCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999999984 34555555555544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=379.48 Aligned_cols=217 Identities=33% Similarity=0.469 Sum_probs=188.5
Q ss_pred ccccc-cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC--cccceEEEEcCCC
Q 000541 163 PSRKK-HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--VPQRTAAYISQHD 239 (1433)
Q Consensus 163 ~~~~~-~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d 239 (1433)
.++.+ ++++|+|||+.|++|++++|+||||||||||||+|+|.+.|+ +|+|.++|.+.... ..++.+||++|++
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~ 87 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEP 87 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCC
Confidence 34455 588999999999999999999999999999999999999997 99999999887652 3357899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+++.+||+|||.|.+++.+... ......++.+++.+||++..++.
T Consensus 88 ~~~~~lT~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~ 133 (293)
T COG1131 88 SLYPELTVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKANKK 133 (293)
T ss_pred CCCccccHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhCcc
Confidence 99999999999999998875421 01123467899999999855544
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ ++||+||||||+||.||+++|+++||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+||+|
T Consensus 134 ~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v 207 (293)
T COG1131 134 V-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRV 207 (293)
T ss_pred h-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEE
Confidence 4 569999999999999999999999999999999999999999999999864 4467777899999999999999
Q ss_pred EEecCCeEEEecChhHHHHHHHh
Q 000541 400 ILISDGQIVYQGPREHVLEFFKF 422 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~~f~~ 422 (1433)
++|++|++++.|+.+++...+..
T Consensus 208 ~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 208 IILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999998776543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=355.49 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=175.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++||+..+.... ....+|++||+.|++||++||||||||||||||++|.|... +.+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcC
Confidence 34677776654321 22579999999999999999999999999999999999987 46999999997654
Q ss_pred c------ccc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccc-ccccCCCCCC
Q 000541 916 Q------ETF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ-ALVGLPGVSG 987 (1433)
Q Consensus 916 ~------~~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~-~~vg~~~~~~ 987 (1433)
. ..+ ++.+|||+|+..+.|++||+||+.....+..- ....+++.++++++.+||.+..+ .. +..
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 123 35699999999999999999999987655422 22255677889999999986655 43 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
|||||||||+|||||+.+|+||+.||||.+||+.++..|++++++++++ |+|||++|||| ++...+||++.|.+ |+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 9999999999999999999999999999999999999999999999866 99999999986 57889999999997 45
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=350.62 Aligned_cols=213 Identities=25% Similarity=0.370 Sum_probs=190.0
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++|+||+..+. ++.+++|+|++|++||++.++|||||||||+|++|.++.+ +.+|+|++||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57889887763 4579999999999999999999999999999999999988 56999999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP--LRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~vg~~~~~~LSg 990 (1433)
. ..+||.+|||-|.-.+||++||.||+.+.-.+. ..++++.+++++|+++.+||.+ ++++. ...|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999998765443 4567888899999999999975 56654 468999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||+|||.+||||+++|+||+||||++.|||.++..+++.++++.++ |+|||++|||.+ +.+.+.|++.+|+ +|+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999766 999999999975 6788999999998 589999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
+|++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 9886
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=348.61 Aligned_cols=220 Identities=27% Similarity=0.347 Sum_probs=186.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++||+..++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478999988774 34689999999999999999999999999999999999776 5689999999764
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 000541 915 KQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-----LEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983 (1433)
Q Consensus 915 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~ 983 (1433)
.. ..+++.+||++|+..+.+.+||.||++.+..-+.+ .....++.+..+-+.++.+|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 24567899999999999999999999876432222 12333444556678899999998877664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
..|||||+|||+|||+|+++|+||+.|||+++|||.++..||+.|++++++ |.|||++.||.+. ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 479999999999999999999999999999999999999999999999854 9999999999653 467899999998
Q ss_pred cCcEEEEEcCCCc
Q 000541 1063 RGGQEIYVGSLGR 1075 (1433)
Q Consensus 1063 ~gG~~~y~G~~~~ 1075 (1433)
. |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=346.08 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=182.6
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCC
Q 000541 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQH 238 (1433)
Q Consensus 165 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~ 238 (1433)
+.+.++||+|||++|++||+++|+|||||||||||++|.|+++|+ +|+|.+.|+++..... ++.+|+++|+
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~ 93 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeec
Confidence 346678999999999999999999999999999999999999998 9999999999866543 3679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
-.+|..+||+||+.|..+-... +++. ..+..+..-|+..||...
T Consensus 94 gALFssltV~eNVafplre~~~---------lp~~------------------------~i~~lv~~KL~~VGL~~~--- 137 (263)
T COG1127 94 GALFSSLTVFENVAFPLREHTK---------LPES------------------------LIRELVLMKLELVGLRGA--- 137 (263)
T ss_pred cccccccchhHhhheehHhhcc---------CCHH------------------------HHHHHHHHHHHhcCCChh---
Confidence 9999999999999998753321 1111 122334455788899864
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
+.+.+...||||++||++||||++.+|+++|+||||+||||.++..+.+.++++.+..+ .|+++++|+.++++..+|+
T Consensus 138 -~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Dr 215 (263)
T COG1127 138 -AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADR 215 (263)
T ss_pred -hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhce
Confidence 23456678999999999999999999999999999999999999999999999987764 5566699999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000541 399 IILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~ 418 (1433)
|++|.+|+|+.+|+++++.+
T Consensus 216 v~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 216 VAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=339.17 Aligned_cols=202 Identities=29% Similarity=0.385 Sum_probs=183.8
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc--ccccceEEEeccCCCCCCCCCH
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ--ETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
.++++||||+++.||++||+|+|||||||+|++|++... |.+|.|++||.+... ...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 358999999999999999999999999999999999988 569999999987533 4567889999987888999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
+|||.|.+.+. ++...+.+++.+++.+.|+|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999885 45567778899999999999999999875 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
|..+...+.+.++++.++|++||+++|..+ ++-++||++++|.+ |++++.|++.
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999999999999999863 66669999999986 8999999873
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=331.91 Aligned_cols=213 Identities=27% Similarity=0.376 Sum_probs=184.3
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.|+||+..|+. .+.+|+||||++++||++-|+|||||||||||++|.+... +..|+|+++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 678899877752 2569999999999999999999999999999999999877 56899999999864
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
. .-.+|.+|+|+||..+.+..||+||+.|..... ..+..+.++++.++|+.+||.+.++.+ ...||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 135788999999999999999999999987654 334566778899999999999888776 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhc-ceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD-ELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd-~~~ll~~gG~~~ 1068 (1433)
|||+|||+||||++.+|++|+.||||.+||+..+..|++++.++.+.|.|||+.||+ .++.+... +++.|. .|+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd--~~lv~~~~~rvl~l~-~Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD--LELVNRMRHRVLALE-DGRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc--HHHHHhccCcEEEEe-CCEEE
Confidence 999999999999999999999999999999999999999999999999999999997 46666665 566665 58998
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
.....
T Consensus 217 ~d~~~ 221 (223)
T COG2884 217 RDESR 221 (223)
T ss_pred ecccc
Confidence 76654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=350.19 Aligned_cols=194 Identities=25% Similarity=0.380 Sum_probs=171.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 246 (1433)
...++|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+|
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 3367999999999999999999999999999999999999998 999999999883 35678999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.|+.+.++... . +....++..|+.+||.+..|.. .+
T Consensus 89 v~~NV~l~l~~~~~~~----------~------------------------e~~~~a~~~L~~VgL~~~~~~~-----P~ 129 (248)
T COG1116 89 VLDNVALGLELRGKSK----------A------------------------EARERAKELLELVGLAGFEDKY-----PH 129 (248)
T ss_pred HHhhheehhhccccch----------H------------------------hHHHHHHHHHHHcCCcchhhcC-----cc
Confidence 9999999987664211 0 1122467789999999887754 45
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.|++.++|+.+|+..++|||++|+++
T Consensus 130 qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 130 QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 799999999999999999999999999999999999999999999988765 567777999999999999999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=351.10 Aligned_cols=208 Identities=26% Similarity=0.440 Sum_probs=177.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCC--CCCCCCCH
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 247 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 247 (1433)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+..+|||||.. .+-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999998 999999999887766667899999953 33445799
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+|.+..+..-+ ........++ ....++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~-----~g~~~~~~~~-------------------------d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGK-----KGWFRRLNKK-------------------------DKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCccc-----ccccccccHH-------------------------HHHHHHHHHHHcCchhhhCCcccc-----
Confidence 99999873211 1111111111 124578899999999999999986
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|.+.|+++.+. +.+|++++|+...+.++||+|+.|+. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999999764 67788899999999999999999965 68
Q ss_pred EEecChhHHHH
Q 000541 408 VYQGPREHVLE 418 (1433)
Q Consensus 408 v~~G~~~~~~~ 418 (1433)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999998753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=353.56 Aligned_cols=205 Identities=29% Similarity=0.431 Sum_probs=184.7
Q ss_pred ceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCc---cCCc-ccccceEEEeccCCCCCCC
Q 000541 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY---PKKQ-ETFARISGYCEQNDIHSPN 935 (1433)
Q Consensus 860 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~-~~~~~~~gyv~Q~d~~~~~ 935 (1433)
...+++|||+.|+.||++|++|||||||||||++|+|+.+ +..|.|.+||. +.+. ..-.|.+|||+|+..+|+.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999988 56999999998 5443 2345789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000541 936 VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1015 (1433)
Q Consensus 936 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPT 1015 (1433)
+||.||+.|+.+++ ....++.+.+.+++++|+.+.|+++.+.. ...|||||||||++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998777 33345667788899999999999999876 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1016 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1016 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
++||+.-+..+.+.|+++.++ |.|+|++|||+. +..+.+|++++|++ |++.-.|+..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999876 999999999984 89999999999986 8999999873
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=367.50 Aligned_cols=215 Identities=27% Similarity=0.408 Sum_probs=193.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|++..+. +..+|+|+|++|++||.++|+|||||||||||++|||+.. +.+|+|.|+|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578899987763 1229999999999999999999999999999999999987 5699999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
+. ...+|.+++|+|+..++|++||+||+.|+.+++ ..++++.+++++++.+.|++.++.|++ .+.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 345688999999999999999999999998776 345677888999999999999999987 358999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||. .+...++|++++|. +|++.-.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 89999999996 58888999999999 599999998
Q ss_pred CC
Q 000541 1073 LG 1074 (1433)
Q Consensus 1073 ~~ 1074 (1433)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 73
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=340.11 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=181.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHDN 240 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 240 (1433)
.++++|+|||+.|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 5678999999999999999999999999999999999999988 9999999988765542 367999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
+.+.+||.+|+..+..-+.. .-....++.+. +....+-..|+.+|+.+.+.++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s-----------~~~slfglfsk---------------~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTS-----------TWRSLFGLFSK---------------EDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccch-----------HHHHHhCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHh
Confidence 99999999999987532210 00011111111 11123345789999999988887
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
++ |||||+|||+|||||+.+|++++-|||+++||+.++.++++.|++++...+ .|+++.+|..+-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHHhhhe
Confidence 74 999999999999999999999999999999999999999999999987654 555556788899999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 000541 401 LISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~~ 418 (1433)
-|++|+|+|+||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999998754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=330.64 Aligned_cols=207 Identities=30% Similarity=0.377 Sum_probs=183.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..... .++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345999999999999999999999999999999999999998 999999999875432 357899999878899999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.|.+++.+. .+. +.+..++.+.+.|+|.+|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l----------~~~------------------------~~kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGL----------SRK------------------------EIKARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhh----------hhh------------------------HHHHHHHHHHHHhChHHHHHHHHhh---
Confidence 999999999887543 111 2234567789999999999999985
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+|-|+||||+|||||+.+|++++|||||||||-.+...+-+.++++.. .+.+|+..+|..+|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecC
Confidence 999999999999999999999999999999999999999999998743 3677778899999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+.+++..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=368.13 Aligned_cols=214 Identities=28% Similarity=0.428 Sum_probs=187.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588999998773 2469999999999999999999999999999999999887 5689999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 915 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
.. ...++.+||++|+..+++.+||+|++.|.+.++. .+..+...+++++++.+++.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2346789999999999999999999998776531 233344556789999999988877764 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999975 56778999999986 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=333.47 Aligned_cols=223 Identities=26% Similarity=0.398 Sum_probs=179.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCCc-----ccceEEEEcCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQHD 239 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 239 (1433)
+++.+|+|||+.|+++++||++|||||||||||++|..+.+ +..+++|+|.++|+++-+.. .++.+|.|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 45679999999999999999999999999999999988754 45678999999999986542 358899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc-cccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-CADT 318 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt 318 (1433)
+-|| +|++||+.|+.+..|... .++. .+++..|+.-+|-+ ..|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~-~~ld---------------------------------eiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD-KELD---------------------------------EIVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch-HHHH---------------------------------HHHHHHHHHhHhHHHhHHH
Confidence 9999 999999999999887633 1111 12222233333321 1111
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
. ++...+|||||+||++|||||+-+|+||+||||||+|||-++..|-+.+.++.+ .-|||.++|.+.++.+..|+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHh
Confidence 1 122347999999999999999999999999999999999999999999999853 45666799999999999999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHH
Q 000541 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 437 (1433)
...+..|+++++|+.+++ |..|.++...||+
T Consensus 218 taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999999999987 3456666666654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=341.56 Aligned_cols=195 Identities=28% Similarity=0.440 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 241 (1433)
.++|+|||+.|++||+++|+|||||||||||++|+|...|+ +|+|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999988876542 2579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccc-ccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD-TMV 320 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d-t~v 320 (1433)
+|++||+||+.+++...+...+ ......+.+++.+||.+..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999998766543110 01233567899999987655 444
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
..|||||||||+|||||+.+|++++.||||.+||+.++..+++.++++++. .++|+++++|+. ++...|||++
T Consensus 141 -----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i 213 (226)
T COG1136 141 -----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVI 213 (226)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998764 466777788875 6778999999
Q ss_pred EecCCeE
Q 000541 401 LISDGQI 407 (1433)
Q Consensus 401 lL~~G~i 407 (1433)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.51 Aligned_cols=217 Identities=26% Similarity=0.386 Sum_probs=193.6
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|++..+. +..+|+|+|++|++||+++|+|||||||||||++|||... +.+|+|.++|++
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 3588999987763 4579999999999999999999999999999999999988 569999999998
Q ss_pred CCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 914 KKQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 914 ~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
+... ..+|.+|+|+|+-.+||++||+||+.|+.+++ ....+++.+++++++++.++|.+.+++.. ..|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHH
Confidence 8653 45788999999999999999999999997643 23345667789999999999999988874 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||||+.+|++|+||||.|+||..-+..+..-|+++.++ |.|.|++|||.. +...+.||+.+|++ |++.-.|
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~g 219 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVG 219 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecC
Confidence 99999999999999999999999999999999999999998755 999999999964 78889999999985 8999999
Q ss_pred CCC
Q 000541 1072 SLG 1074 (1433)
Q Consensus 1072 ~~~ 1074 (1433)
++.
T Consensus 220 tP~ 222 (352)
T COG3842 220 TPE 222 (352)
T ss_pred CHH
Confidence 874
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=327.03 Aligned_cols=218 Identities=23% Similarity=0.323 Sum_probs=185.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC---CCeeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~---~~~~~G~I~i~ 910 (1433)
..++++|++..|. ++++|+|||+.|++++++|+||||||||||||++|..... +-..+|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3578899998774 4679999999999999999999999999999999987533 33578999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPG 984 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~ 984 (1433)
|+++.. ..+||.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++.++.|++.|+...|.+ ++|.+...
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 987643 356889999999999999 999999999987754322 566788899999888865 45555443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
..+|||||+|||||||+|+.+|+||+||||||+|||.+...|-+++.++. +.-|||++||.+. ......|+...+..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 34799999999999999999999999999999999999999999999997 4689999999864 45667899999986
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++.+|+.
T Consensus 224 G~LvE~g~T 232 (253)
T COG1117 224 GELVEFGPT 232 (253)
T ss_pred cEEEEEcCH
Confidence 899999996
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=368.88 Aligned_cols=207 Identities=25% Similarity=0.374 Sum_probs=180.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 246 (1433)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.++|++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 356999999999999999999999999999999999999987 9999999998876543 368999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.|+.+..+. .+. +....++.+++.+||++..+..++
T Consensus 93 v~eNi~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~----- 133 (356)
T PRK11650 93 VRENMAYGLKIRGM----------PKA------------------------EIEERVAEAARILELEPLLDRKPR----- 133 (356)
T ss_pred HHHHHHhHHhhcCC----------CHH------------------------HHHHHHHHHHHHcCChhHhhCChh-----
Confidence 99999998654321 000 112345678999999887776654
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+|||||+.+|++++|||||++||+.++..+.+.|+++.+. .+++++.++|+..++.+++|+|++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998653 35677779999999999999999999999
Q ss_pred EEEecChhHHH
Q 000541 407 IVYQGPREHVL 417 (1433)
Q Consensus 407 iv~~G~~~~~~ 417 (1433)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=364.85 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=185.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++.. ...+.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6789998877411 112469999999999999999999999999999999999987 56899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. ..++.+||++|+..+++..||+||+.|....+ ..++.+.++++.++++.+||.+..|... +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875532 1334455667889999999998877653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||+++|+++ .+.+.+|++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 999999999964 45678999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=368.40 Aligned_cols=208 Identities=24% Similarity=0.387 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--eEEEECCccCCCCcc-cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVS--GRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 245 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 46999999999999999999999999999999999999987 7 999999998865443 46799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.|+.+..+.. +. +....++.+++.+||++..|+.++
T Consensus 95 tv~enl~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~~~~~---- 136 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------KA------------------------DIAERVADALKLVGLGDAAAHLPA---- 136 (362)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHhcCCCchhhCChh----
Confidence 9999999987543210 00 112245778999999988876665
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 137 -~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 137 -QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999865432567777999999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++..|+++++.+
T Consensus 216 ~i~~~g~~~~~~~ 228 (362)
T TIGR03258 216 RLAAHGEPQALYD 228 (362)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998843
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=350.38 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=180.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35778887763 2469999999999999999999999999999999999887 46899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
. ..+++.++|++|++.+++.+||+|++.+...... ..+..+..+.++++++.+++.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 2345679999999989999999999988643221 1233344566788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
|||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999999874 899999999975 46678999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 98875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=367.80 Aligned_cols=207 Identities=28% Similarity=0.447 Sum_probs=180.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 46899999999999999999999999999999999999988 9999999998865443 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+.++. .+. +....++.+++.+||++..|..+. .
T Consensus 94 ~eNi~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~l~L~~~~~~~~~-----~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGM----------GRA------------------------EVAERVAELLDLVGLPGSERKYPG-----Q 134 (353)
T ss_pred HHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCCCchhhCChh-----h
Confidence 9999998653321 000 112346778999999988776554 6
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 56677799999999999999999999999
Q ss_pred EEecChhHHHH
Q 000541 408 VYQGPREHVLE 418 (1433)
Q Consensus 408 v~~G~~~~~~~ 418 (1433)
+..|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=366.96 Aligned_cols=206 Identities=24% Similarity=0.399 Sum_probs=179.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 46899999999999999999999999999999999999998 9999999998876554 3789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+.++.. + .+....++++++.+||.+..+..+ +.
T Consensus 96 ~eNi~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gl~~~~~r~~-----~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVP----------K------------------------EERKQRVKEALELVDLAGFEDRYV-----DQ 136 (351)
T ss_pred HHHHHHHHhHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99999987543211 0 011234577899999988776554 46
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 56677799999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=361.87 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=178.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998866432 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.|+.+..+.. +. +....+.++++.+||++..|..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~v~e~l~~vgL~~~~~~~~~- 139 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------KD------------------------EIKRKVTELLALVGLGDKHDSYPS- 139 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 9999999999976543210 00 111235678999999987776654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +.+|+.++|+.+.+.++||+|++|
T Consensus 140 ----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999987643 466777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=366.80 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=187.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899988762 12469999999999999999999999999999999999987 5699999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
... ..++.+|||+|+..++|.+||+||+.|....+ ..+..+.++.++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 432 23478999999999999999999999986543 2344555677899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+.+|++++|.+ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998865 999999999974 67889999999985 89999998
Q ss_pred CC
Q 000541 1073 LG 1074 (1433)
Q Consensus 1073 ~~ 1074 (1433)
..
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 63
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=366.17 Aligned_cols=214 Identities=26% Similarity=0.384 Sum_probs=188.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999988773 2468999999999999999999999999999999999987 5699999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.. ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.++.++++++.++|.++.+... ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 224577999999999999999999999986543 2334556678999999999998888753 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999975 67888999999986 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
+
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=362.31 Aligned_cols=215 Identities=27% Similarity=0.390 Sum_probs=186.5
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3589999998873 3469999999999999999999999999999999999987 468999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 914 KKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 914 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
... ...++.+||++|+..+++.+||+|++.+.+.++. .+..+..+.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999987665431 222334456778999999988877765 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999975 56778999999986 8999999
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=362.58 Aligned_cols=209 Identities=20% Similarity=0.318 Sum_probs=181.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD 239 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 239 (1433)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 4567999999999999999999999999999999999999997 9999999999876543 46799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+++++||+||+.|+.+..+.. +. +....++.+++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWP----------EQ------------------------ERKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHhcCCchhhhCC
Confidence 9999999999999986543321 00 1122356789999998877766
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
++ .|||||||||+|||||+.+|+++||||||+|||+.++.++.+.++++.+. .+.||+.++|+..++..++|+|
T Consensus 127 p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 127 PD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 65 59999999999999999999999999999999999999999999988653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
++|++|+++..|+++++..
T Consensus 201 ~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCEEEeeCCHHHHHh
Confidence 9999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=366.18 Aligned_cols=218 Identities=29% Similarity=0.407 Sum_probs=185.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.++|++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998865544 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+.++.. +. +....++.+++.+||++..+..+. .
T Consensus 104 ~eNi~~~l~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~p~-----~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------AA------------------------EITPRVMEALRMVQLEEFAQRKPH-----Q 144 (375)
T ss_pred HHHHHHHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 99999986533210 00 112245678999999987776654 6
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 56677799999999999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChhhHH
Q 000541 408 VYQGPREHVLEFFKFMGFECPKRKGVADFL 437 (1433)
Q Consensus 408 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 437 (1433)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998743 45544455554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=358.92 Aligned_cols=207 Identities=28% Similarity=0.413 Sum_probs=179.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
.+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 356999999999999999999999999999999999999998 999999999875432 246799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.|.++..+... . +....++.+++.+||++..++.++
T Consensus 96 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (306)
T PRK13537 96 TVRENLLVFGRYFGLSA----------A------------------------AARALVPPLLEFAKLENKADAKVG---- 137 (306)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCchh----
Confidence 99999998665432100 0 011234678899999988888775
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|..+++.++||+|++|++|
T Consensus 138 -~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 138 -ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred -hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999854 3667787999999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~l~~ 227 (306)
T PRK13537 215 RKIAEGAPHALIE 227 (306)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=363.21 Aligned_cols=215 Identities=24% Similarity=0.372 Sum_probs=188.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 588999998773 2468999999999999999999999999999999999987 5699999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
... ..+|.+|||+|+..++|.+||+||+.|....+. .++.+.+++++++++.+++.++.+... ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 234789999999999999999999999865432 334556678899999999998887663 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|.+ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999975 67888999999985 89999998
Q ss_pred CC
Q 000541 1073 LG 1074 (1433)
Q Consensus 1073 ~~ 1074 (1433)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=340.80 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=176.4
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5678887763 2469999999999999999999999999999999999876 568999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..++.++|++|++.+++.+|++|++.+..... .......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23457899999998889999999998765332 1223334456788999999987766653 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999975 46678999999986 7887655
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=331.90 Aligned_cols=227 Identities=28% Similarity=0.385 Sum_probs=193.0
Q ss_pred ccccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc----ceEEEEc
Q 000541 161 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYIS 236 (1433)
Q Consensus 161 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 236 (1433)
.+.++.+..++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+
T Consensus 9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeec
Confidence 3456778899999999999999999999999999999999999999998 99999999999887765 3478889
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc
Q 000541 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316 (1433)
Q Consensus 237 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 316 (1433)
|....|++|||.||+..++..+.. ....-...+. ..+..+.......+|+.+||.+.+
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~-------------------~~~e~~~~e~A~~~Le~vgL~~~a 143 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRA-------------------RKEEREARERARELLEFVGLGELA 143 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhh---hhhhhccccc-------------------hhhHHHHHHHHHHHHHHcCCchhh
Confidence 999999999999999998765421 0000000000 001122334567799999999999
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
|+..|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ .++.+|+.|-|++.-++.+|
T Consensus 144 ~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 144 DRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred cchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhc
Confidence 999986 999999999999999999999999999999999999999999999865 35688888999999999999
Q ss_pred CeEEEecCCeEEEecChhHHHH
Q 000541 397 DDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~~~~~~ 418 (1433)
|||+||+.|+++.+|+++++.+
T Consensus 218 dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 218 DRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=341.50 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=182.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCC----CCcccceEEEEcCC-CCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD----EFVPQRTAAYISQH-DNHIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~-d~~~~ 243 (1433)
..+|+|+|+.|++|+.++|+||||||||||+++|+|.+.|+ +|+|.++|.+.. ....++.+|||+|+ |.++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999998865 22345789999999 56688
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
.-||.|.++|+.+..+... ++...+++.+++.+||.+..+..+
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p--- 136 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRPP--- 136 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCCc---
Confidence 8999999999988766421 112345778999999998877554
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
..|||||||||+||.+|+.+|++++|||||+|||+..+.++++.++++.+ .++.|+|+++|+.+.+.+++|++++|+
T Consensus 137 --~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 137 --FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred --cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 345677779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000541 404 DGQIVYQGPREHVLE 418 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~~ 418 (1433)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=362.91 Aligned_cols=214 Identities=24% Similarity=0.337 Sum_probs=187.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeee--eEEEEcCc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS--GSIMISGY 912 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~--G~I~i~G~ 912 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 578999998873 2469999999999999999999999999999999999887 457 99999998
Q ss_pred cCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 913 PKKQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 913 ~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
+... ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2344555677899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 57788999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=321.58 Aligned_cols=206 Identities=27% Similarity=0.373 Sum_probs=182.4
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET----FARISGYCEQNDIHSP 934 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~----~~~~~gyv~Q~d~~~~ 934 (1433)
+++++++|||+.+++||++|++|||||||||.+.++.|... +.+|+|.+||.+++... .+..+||.||+...|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45689999999999999999999999999999999999988 56999999999876532 2335899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000541 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEP 1014 (1433)
.+||+||++-....+.. +....++++..+++++.+.+.++++... ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999877666532 2223456667889999999999999863 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1015 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
++|+||.+...|.+.++.+.+.|..|++|-|.-+ +....+||.+++.+ |++...|++.
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 9999999999999999999999999999999975 78899999999996 8999999973
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=313.02 Aligned_cols=196 Identities=28% Similarity=0.371 Sum_probs=172.1
Q ss_pred cceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHHHHH
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE-TFARISGYCEQNDIHSPNVTVYESLLY 944 (1433)
Q Consensus 866 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f 944 (1433)
..++.|.+||++||+||||||||||||+|+|... |.+|+|+|||++.... ...|-++.++|+..+|..+||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999988 5699999999986543 456778999999999999999999976
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 000541 945 SAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024 (1433)
Q Consensus 945 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~ 1024 (1433)
+..-. ...+ .+.++.++.++..+||.++.+++.+ .|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~--LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG--LKLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc--cccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 53211 1222 4455678999999999999988753 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1025 IVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1025 ~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++..++.++.++ +.|++++||+|+ |.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999855 899999999996 78899999999986 899999986
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=338.46 Aligned_cols=209 Identities=25% Similarity=0.430 Sum_probs=177.3
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5678887663 2469999999999999999999999999999999999876 468999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000541 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRL 996 (1433)
Q Consensus 917 ~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl 996 (1433)
..++.++|++|+..+++.+||+|++.+....+. ....+.++.++++++.+++.+..++. ...||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345679999999988899999999988655431 22334455678899999998766654 357999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 997 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999877899999999975 46677999999985 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=340.88 Aligned_cols=208 Identities=24% Similarity=0.332 Sum_probs=174.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 578899887731 12359999999999999999999999999999999999876 45899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. .+++.++|++|++.+++.+||.||+.+....+. ......++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988999999999988754321 222334556888999999987776653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|.+ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999877999999999975 45667899999986 54
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=310.81 Aligned_cols=201 Identities=24% Similarity=0.396 Sum_probs=175.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 252 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 252 (1433)
.++..|.+||+++|+||||||||||||.++|+..|. +|+|.+||++.....| +|-++.++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999998 9999999999876655 578999999999999999999999
Q ss_pred HHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhH
Q 000541 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQ 332 (1433)
Q Consensus 253 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 332 (1433)
++.. ++- ++.. +....++.++...||..+.+...+ .|||||
T Consensus 94 LGl~---P~L------kL~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGL------KLNA-------------------------EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---ccc------ccCH-------------------------HHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8742 110 0111 122346778999999999887765 599999
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecC
Q 000541 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGP 412 (1433)
Q Consensus 333 rqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 412 (1433)
||||++||+|+.+.+|++||||+|+||+.-+.++...+.+++... +.|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998754 5666668888899999999999999999999999
Q ss_pred hhHHH
Q 000541 413 REHVL 417 (1433)
Q Consensus 413 ~~~~~ 417 (1433)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98765
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=340.31 Aligned_cols=214 Identities=25% Similarity=0.357 Sum_probs=187.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|++|.++. ...+|+|+|+.+++||.++|+|+||||||||+++|+|... +.+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 678999998841 1479999999999999999999999999999999999988 55899999998855
Q ss_pred ----cccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 ----QETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ----~~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
...+++.+|||+|++. .+..-||.|.+.|+..- ...+.++.+++++++++.+++.+++++. ...|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 3456788999999974 45678999999998642 3455567888999999999999998775 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |.|||+++||.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 699999999864 46677999999986 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=325.22 Aligned_cols=210 Identities=24% Similarity=0.412 Sum_probs=175.9
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc----ceEEEEcCCCC
Q 000541 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYISQHDN 240 (1433)
Q Consensus 165 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~ 240 (1433)
.+++.++|+|||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. +-++||||...
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 445678999999999999999999999999999999999999987 99999999999887664 45899999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhC-CCcccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG-LDVCADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~ 319 (1433)
.|++|||+|||..++..+.. + +.. ..+ .|.+.+.|= |.+-.+..
T Consensus 89 iF~~LTVeENL~~g~~~~~~--~-----~~~----------~~~------------------~e~v~~lFP~Lker~~~~ 133 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRD--K-----EAQ----------ERD------------------LEEVYELFPRLKERRNQR 133 (237)
T ss_pred chhhCcHHHHHhhhhhcccc--c-----ccc----------ccc------------------HHHHHHHChhHHHHhcCc
Confidence 99999999999988643210 0 000 000 122333331 34445555
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
-| .|||||||.++|||||+++|++|+|||||.||-|.-..+|.+.++++.+. ++.+|+.+.|+...+.+++|+.
T Consensus 134 aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~ 207 (237)
T COG0410 134 AG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRG 207 (237)
T ss_pred cc-----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEE
Confidence 55 49999999999999999999999999999999999999999999998754 3578888999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
++|.+|+|++.|+.+++..
T Consensus 208 yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 208 YVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEeCCEEEEecCHHHHhc
Confidence 9999999999999998863
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.91 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=179.4
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 567887776310 011469999999999999999999999999999999999876 468999999987642
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000541 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRL 996 (1433)
Q Consensus 917 ~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl 996 (1433)
.++.++|++|++.+++.+||+|++.+....+. ...+...+.++++++.+++.+..+..+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35679999999988888999999988754331 222334556788999999987766653 57999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCC
Q 000541 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGSL 1073 (1433)
Q Consensus 997 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~-gG~~~y~G~~ 1073 (1433)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|.+ +|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999975 46678999999985 4899987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=355.20 Aligned_cols=214 Identities=28% Similarity=0.389 Sum_probs=183.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899988773 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 915 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
.. ...++.+||++|++.+++.+||+|++.+.+... ..+..+..+.++++++.+++.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 224567999999998999999999998755432 1223333456778999999988777664 4799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999975 56678999999985 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=360.23 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=185.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67889888763 2469999999999999999999999999999999999887 56899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 QE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.. ..++.+||++|+..++|.+||+||+.|....+.. ...+.++.++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987653211 12234455667899999999988877663 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999975 67888999999985 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 6
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=357.17 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=176.3
Q ss_pred ceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc--ccccceEEEeccCCCCCCCCC
Q 000541 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ--ETFARISGYCEQNDIHSPNVT 937 (1433)
Q Consensus 860 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 937 (1433)
++.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999987 468999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000541 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsg 1017 (1433)
|+|++.+.+.++. .+..+.++.++++++.+++.+..++.+ +.|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765532 223344556889999999988777764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1018 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1018 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999975 56778999999985 899999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=360.15 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=178.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999998865433 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+...... ...+ .+....++.+++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~------~~~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRE------RPNA------------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhccccc------CCCH------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999865321000 0000 011234567899999988777655 46
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+. .+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 356777799999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=312.24 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=178.7
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCC
Q 000541 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQH 238 (1433)
Q Consensus 165 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~ 238 (1433)
+.....+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|.||+|+|+
T Consensus 11 Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 11 YPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred cCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeee
Confidence 334456999999999999999999999999999999999999998 9999999999875532 5789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
..+++..||.||++|+.+..|... .+....+..+|+..||.+.++.
T Consensus 88 ~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~ 133 (223)
T COG2884 88 FRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARA 133 (223)
T ss_pred ccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhc
Confidence 999999999999999988766421 1123456778999999998875
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.. ..|||||||||+||||++.+|++|+.||||-.||+.++.+|++.+.++.. .||||++.+|+..-+..+-.+
T Consensus 134 lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 134 LP-----SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred Cc-----cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCc
Confidence 54 46999999999999999999999999999999999999999999999854 478888899999999999999
Q ss_pred EEEecCCeEEEecC
Q 000541 399 IILISDGQIVYQGP 412 (1433)
Q Consensus 399 vilL~~G~iv~~G~ 412 (1433)
++.|++|+++....
T Consensus 207 vl~l~~Grl~~d~~ 220 (223)
T COG2884 207 VLALEDGRLVRDES 220 (223)
T ss_pred EEEEeCCEEEeccc
Confidence 99999999987543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.30 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=177.3
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35788887763 2369999999999999999999999999999999999876 46899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 916 QE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 916 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
.. ..++.++|++|++.+++..|++||+.+....+ .....+.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 22357999999998888999999998765432 1223334456788999999987766653 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++++|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999864 899999999974 56677899999985 8888876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=370.86 Aligned_cols=210 Identities=25% Similarity=0.452 Sum_probs=176.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIG 243 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 243 (1433)
++.+||+|+|++|+|||.+||+|||||||||+.++|..+++|+ +|+|.+||+|+.+.++ ++.+|+|.|+|.+|.
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 3467999999999999999999999999999999999999998 9999999999988765 478999999998876
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
-||+|||.|+... .+.|..+.|+. .....|.|. ++++..||.||++
T Consensus 556 -~sI~eNI~YG~~~-------------------------~t~e~i~~AAk-----~ANah~FI~---~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 556 -GSIRENIAYGLDN-------------------------ATDEEIEAAAK-----MANAHEFIT---NFPDGYNTVVGEK 601 (716)
T ss_pred -ccHHHHHhcCCCC-------------------------CCHHHHHHHHH-----HhChHHHHH---hCccccccccCCc
Confidence 4999999998541 11122222221 112233333 4999999999998
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
+. .||||||||++|||||+.+|+||||||.||+||+.+...+-+.|.+..+ +.|+++|.|.. .+.+.+|+|++++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRL-STV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRL-STVRHADQIVVID 676 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhh-hHhhhccEEEEEc
Confidence 87 5999999999999999999999999999999999999999999988743 35666677765 5667899999999
Q ss_pred CCeEEEecChhHHHH
Q 000541 404 DGQIVYQGPREHVLE 418 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~~ 418 (1433)
+|++++.|+++|+.+
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999999875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=342.17 Aligned_cols=207 Identities=30% Similarity=0.402 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999987 999999998875432 235699999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++.+.... .... +....++.+++.+||++..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTR---------LSEE------------------------EIREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccC---------CCHH------------------------HHHHHHHHHHHHcCCchhhcCChh-
Confidence 999999999986432100 0000 011234568899999877666664
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.++||+|++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 3566777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=360.39 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=187.1
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998773 2469999999999999999999999999999999999987 5689999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.. ...+|.+||++|+..++|.+||+||+.|+...+ ..+..+.++.++++++.+++.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999976433 2234455667899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++...+|++++|.+ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999975 67888999999985 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=361.49 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=179.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
..+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 46899999999999999999999999999999999999988 9999999998865443 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+.++.. +. +....++.+++.+||.+..+..+ +.
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99999986543210 00 11234567899999987766555 46
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|++|+|||||++||..++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999886644 56777799999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.58 Aligned_cols=213 Identities=29% Similarity=0.383 Sum_probs=179.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35778887763 2469999999999999999999999999999999999876 46899999998653
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ...++.++|++|+..+++.+||+|++.+....+. ....+.++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2334678999999989999999999988754431 222334456789999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999975 56677899999985 89998876
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=342.08 Aligned_cols=215 Identities=28% Similarity=0.368 Sum_probs=179.1
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 5678887663 2469999999999999999999999999999999999876 468999999987643
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 917 E---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLE-------VDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 917 ~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
. . .++.++|++|++.+++.+||+|++.+....+.... .......+.++++++.+++.+..+.. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 2 1 23468999999999999999999988754321110 01233445678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|++++|.+ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999975 56677999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 99998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=354.31 Aligned_cols=207 Identities=28% Similarity=0.404 Sum_probs=178.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
++++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 457999999999999999999999999999999999999987 999999998875421 235699999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.+.++..+.. .. +....++.+++.+||++..++.++
T Consensus 82 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 123 (302)
T TIGR01188 82 TGRENLEMMGRLYGLP----------KD------------------------EAEERAEELLELFELGEAADRPVG---- 123 (302)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhCCchh----
Confidence 9999999876543210 00 011235678999999988887765
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|++|++|
T Consensus 124 -~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 124 -TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999864 2567777999999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999998765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=337.85 Aligned_cols=221 Identities=37% Similarity=0.626 Sum_probs=181.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC-CeeeeEEEEcCccC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGSIMISGYPK 914 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 914 (1433)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888877411 0135799999999999999999999999999999999998751 13589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~-vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.....++.++|++|++.+++.+||+||+.|.+....+...........+++ .++.+++.+..++. .+.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556789999999999999999999998765443322122222334555 88888888766654 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|.+ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877999999999985578899999999985 8988765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=357.86 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=183.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|++++++.. ..++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998887411 113569999999999999999999999999999999999987 46899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. ..++.+||++|+..+++.+||+||+.+....+ ..+..+.++.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875443 1233444567889999999988776653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 46677999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=340.27 Aligned_cols=213 Identities=27% Similarity=0.381 Sum_probs=179.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35678887763 2469999999999999999999999999999999999877 46899999998753
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 QE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
.. . .++.++|++|++.+++.+||+|++.+....+. .......+.++++++.+++.+..++.+ ..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23468999999999999999999987643321 122334456788999999987666553 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999975 57788999999985 8999988
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 75
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=360.43 Aligned_cols=206 Identities=25% Similarity=0.413 Sum_probs=177.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998765433 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.|+.+..+.. +. +....++.+++.+||++..+..++ .
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KE------------------------EINQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 99999986533210 00 011235678999999887776664 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 56677799999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.45 Aligned_cols=215 Identities=28% Similarity=0.427 Sum_probs=179.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888876411 011269999999999999999999999999999999999876 46899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..+..+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998899999999998765433 1223344567788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999877999999999974 56778999999986 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=340.20 Aligned_cols=217 Identities=27% Similarity=0.402 Sum_probs=180.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988773 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 915 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
... ..++.++|++|++.+++.+||+|++.+....+... ........+.++++++.+++.+..+..+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 22456899999998888999999998865432110 0122233456788999999987666653 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999975 46778999999985 8999988
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=324.35 Aligned_cols=217 Identities=26% Similarity=0.337 Sum_probs=178.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++.+|++..++... ....+|+|||+++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 478899988775321 11259999999999999999999999999999999999988 4699999999876
Q ss_pred Ccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000541 915 KQE----TFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~----~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~~~ 987 (1433)
... .+.+.+-+|+||+. +.|..||++.|.-.... ...++ .++++.++++.+||.+- .++. ...
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 443 35678999999974 67999999998654332 22222 23348899999999753 2332 347
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||||||++|||||+.+|++|+||||||.||+..++.|+++|.++.++ |.|.|+++||.+ -+...|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999865 789999999965 36678899999986 89
Q ss_pred EEEEcCCC
Q 000541 1067 EIYVGSLG 1074 (1433)
Q Consensus 1067 ~~y~G~~~ 1074 (1433)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=323.11 Aligned_cols=205 Identities=27% Similarity=0.337 Sum_probs=176.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc----ccceEEEEcCCC--CCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 243 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 243 (1433)
++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999998 999999998776543 346789999995 5679
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
..||++.|.-+.+..|... ....+.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----hc
Confidence 9999999987765432210 1112566899999986432 34
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
....|||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+ ..+.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 5567999999999999999999999999999999999999999999999876 456788889999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000541 404 DGQIVYQGPREHVLE 418 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~~ 418 (1433)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=358.05 Aligned_cols=214 Identities=23% Similarity=0.367 Sum_probs=186.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999998763 2469999999999999999999999999999999999987 5689999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.. ...+|.+|||+|+..++|.+||.||+.|....+ ..+..+.+++++++++.+++.+..+... ..||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999876543 2234555667899999999998877653 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++...+|++++|.+ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 899999999975 67889999999985 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
+
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 6
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=359.77 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=184.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899988773 2469999999999999999999999999999999999987 4689999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 915 KQE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
... ..++.+||++|+..+++.+||+||+.|....+. .+..+.++.++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 234679999999999999999999998765431 233445567899999999988777654 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++...+|++++|.+ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999975 57788999999985 89999998
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=360.75 Aligned_cols=218 Identities=26% Similarity=0.373 Sum_probs=184.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899988773 3569999999999999999999999999999999999887 5689999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.+||++|+..+++.+||+|++.+....... ........++.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567899999999988999999999875421110 01112334567899999999998887753 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||+.|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 56688999999985 899999
Q ss_pred cCCC
Q 000541 1071 GSLG 1074 (1433)
Q Consensus 1071 G~~~ 1074 (1433)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=335.02 Aligned_cols=207 Identities=29% Similarity=0.405 Sum_probs=175.3
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35778887763 2469999999999999999999999999999999999876 56999999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 916 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 916 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
. ...++.++|++|++.+++..||+|++.+....+. . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2335678999999988999999999987654321 1 1345788899999987776653 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877899999999975 45677999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=351.10 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=183.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|++++++ ++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67889888763 2469999999999999999999999999999999999877 56999999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++..+.++++++.+++.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 223344556889999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999975 57788999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=354.41 Aligned_cols=207 Identities=27% Similarity=0.402 Sum_probs=178.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
++.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 356999999999999999999999999999999999999998 999999999875432 246799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.|.....+.. .. +....++.+++.+||++..++.++
T Consensus 130 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~L~~~~~~~~~---- 171 (340)
T PRK13536 130 TVRENLLVFGRYFGMS----------TR------------------------EIEAVIPSLLEFARLESKADARVS---- 171 (340)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhCCChh----
Confidence 9999999755432210 00 011234567889999988888776
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+ .+++|+.++|+.+++.++||+|++|++|
T Consensus 172 -~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 172 -DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999864 3567777999999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++++|+++++.+
T Consensus 249 ~i~~~g~~~~l~~ 261 (340)
T PRK13536 249 RKIAEGRPHALID 261 (340)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=338.46 Aligned_cols=214 Identities=23% Similarity=0.291 Sum_probs=176.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCC-----CCCeeeeEEEEc
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYISGSIMIS 910 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~-----~~~~~~G~I~i~ 910 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35678887663 236999999999999999999999999999999999987 5 568999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
|.+... ..+++.++|++|++.++ .+||+||+.+....+. .....+.++.++++++.+++.+..+.... .
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987542 23456799999998877 7999999988654331 11112234567889999999876555421 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ .+.+.+|++++|.+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877 99999999975 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 99998875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=336.55 Aligned_cols=209 Identities=30% Similarity=0.422 Sum_probs=172.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 3578888776310 011469999999999999999999999999999999999876 46899999998754
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000541 916 QET-------FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 916 ~~~-------~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~L 988 (1433)
... .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+++.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24579999999999999999999998764431 222334456788999999987766553 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++. + +.+|++++|.+ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999987 58999999999753 4 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=341.09 Aligned_cols=216 Identities=28% Similarity=0.332 Sum_probs=177.2
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 5678877663 11469999999999999999999999999999999999876 458999999987642
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 917 E------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRL-----PLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 917 ~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
. ..++.++|++|++.+++.+||+||+.+...... ..........+.++++++.+++.+..+.. .
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 1 235679999999988999999999987532110 00111123345678889999997766654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999975 46668999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 899998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=338.47 Aligned_cols=217 Identities=25% Similarity=0.337 Sum_probs=180.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888776310 011269999999999999999999999999999999999987 46899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+.. ...||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 234679999999999999999999988654331 22333455678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 46677999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=335.79 Aligned_cols=217 Identities=24% Similarity=0.343 Sum_probs=179.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|+++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37889999887411 011469999999999999999999999999999999999876 5699999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 915 KQET------F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
.... . ++.++|++|+..+++.+|++||+.+....+ ....+..++.++++++.+++.+..+.. ...
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4321 2 256899999998889999999998865432 122334455688999999998776654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ..+.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999974 3455789998875 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998885
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=333.71 Aligned_cols=192 Identities=31% Similarity=0.416 Sum_probs=162.9
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCC-CCCCCCHH
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDI-HSPNVTVY 939 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~-~~~~lTv~ 939 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.++|++|++. .+...||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 359999999999999999999999999999999999877 568999999987644344567999999964 34567999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000541 940 ESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019 (1433)
Q Consensus 940 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD 1019 (1433)
||+.+..... . ...+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 11245788999999988777653 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 1020 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 1020 ~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999877999999999975 45667999999986 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=337.96 Aligned_cols=214 Identities=21% Similarity=0.342 Sum_probs=180.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999876 56899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 Q-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ...++.++|++|++..++.+||+|++.+...... .....+..+.++++++.+++.+..+.. ...|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2335679999999988899999999987542111 122334455678999999998766654 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 45677899999985 899999
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=354.37 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=176.9
Q ss_pred ceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc---cc----cceEEEeccCCCC
Q 000541 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE---TF----ARISGYCEQNDIH 932 (1433)
Q Consensus 860 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~~----~~~~gyv~Q~d~~ 932 (1433)
.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4569999999999999999999999999999999999987 5699999999886532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000541 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012 (1433)
Q Consensus 933 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LD 1012 (1433)
+|.+||+||+.|..... ..+.++..+++.++++.++|.+..+... ..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876542 2344556677899999999988777653 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1013 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1013 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|||++||+.++..+++.++++.++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999999755 899999999964 46788999999985 899999985
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=378.87 Aligned_cols=207 Identities=29% Similarity=0.471 Sum_probs=172.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 246 (1433)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||+++++... ++.++||+|++. +.+-|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~-Lf~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPF-LFSGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccch-hhcCc
Confidence 5899999999999999999999999999999999999998 9999999999987765 578999999885 55679
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
++||+.++.. +.+.+..+.|+...+. .|. +..++...||.||+.+.
T Consensus 563 I~eNi~l~~p-------------------------~~~~e~i~~A~~~ag~-----~~f---I~~lP~gy~t~v~E~G~- 608 (709)
T COG2274 563 IRENIALGNP-------------------------EATDEEIIEAAQLAGA-----HEF---IENLPMGYDTPVGEGGA- 608 (709)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc-----HHH---HHhcccccccccccCCC-
Confidence 9999998632 2222333333322221 222 23489999999998665
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++.+ + .|+|.++|.. .+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~-~T~I~IaHRl-~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--G-RTVIIIAHRL-STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--C-CeEEEEEccc-hHhhhccEEEEccCCc
Confidence 7999999999999999999999999999999999999999999999743 3 4455466654 6778999999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
|+.+|+++|+.+
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999986
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=332.58 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 56999999999999999999999999999999999999987 9999999988754322 3579999999888899999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.++....+. ... .....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGV----------PKA------------------------EIRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 9999986532210 000 011234567889999877776664 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 356677799999999999999999999999
Q ss_pred EEec
Q 000541 408 VYQG 411 (1433)
Q Consensus 408 v~~G 411 (1433)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=312.66 Aligned_cols=214 Identities=29% Similarity=0.420 Sum_probs=182.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56789999873 3579999999999999999999999999999999999887 45899999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCh--hHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDS--PTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~--~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ...++..+..||+-.+-...||+|-+.++. .|..... .+..+..+++|+..++.+++.+. ...|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCc
Confidence 4 344667799999988877889999999874 3432222 24455688899999999988765 357999
Q ss_pred HHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 991 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 991 GqrkRl~ia~~L~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
||||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|++++|.+
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~- 216 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ- 216 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-
Confidence 99999999999986 446899999999999999999999999999999999999999874 5677899999985
Q ss_pred cEEEEEcCCC
Q 000541 1065 GQEIYVGSLG 1074 (1433)
Q Consensus 1065 G~~~y~G~~~ 1074 (1433)
|+++..|++.
T Consensus 217 Grv~a~g~p~ 226 (259)
T COG4559 217 GRVIASGSPQ 226 (259)
T ss_pred CeEeecCCHH
Confidence 8999999974
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=334.03 Aligned_cols=214 Identities=25% Similarity=0.407 Sum_probs=178.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 357788877631 11469999999999999999999999999999999999876 46899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ..+++.++|++|++.+++..||+||+.+....+. .+.....+.++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654431 222333456788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|.+ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999876 599999999975 46677899999985 899988875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=332.64 Aligned_cols=206 Identities=27% Similarity=0.353 Sum_probs=173.0
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788888762 12369999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. .+++.++|++|++.+++.+||.|++.+....+. ......++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999988899999999988754321 222334456788999999987655543 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998877999999999975 566678999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=339.10 Aligned_cols=214 Identities=25% Similarity=0.343 Sum_probs=179.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 77889988763 2359999999999999999999999999999999999876 46899999998753
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCC
Q 000541 916 Q-----------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG 984 (1433)
Q Consensus 916 ~-----------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~ 984 (1433)
. ...++.++|++|++.+++..||+||+.+...... ........+.++++++.+++.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234578999999988999999999987543211 122333455678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999975 46678999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=333.22 Aligned_cols=206 Identities=30% Similarity=0.396 Sum_probs=173.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccC
Confidence 356999999999999999999999999999999999999887 999999998764321 235699999999889999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.+..+..+.. .. +....++.+++.+||++..++.++
T Consensus 89 tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 130 (220)
T cd03265 89 TGWENLYIHARLYGVP----------GA------------------------ERRERIDELLDFVGLLEAADRLVK---- 130 (220)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChh----
Confidence 9999999865432210 00 011235678999999877776665
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|++|
T Consensus 131 -~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 59999999999999999999999999999999999999999999998653 2567777999999999999999999999
Q ss_pred eEEEecChhHH
Q 000541 406 QIVYQGPREHV 416 (1433)
Q Consensus 406 ~iv~~G~~~~~ 416 (1433)
+++..|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (220)
T cd03265 209 RIIAEGTPEEL 219 (220)
T ss_pred EEEEeCChHHc
Confidence 99999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=352.51 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998765432 35799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++....+.. .. +....++.+++.+||++..++.++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------KA------------------------EIKARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 9999999999876533210 00 011235668999999887776654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||+|++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 3567777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=338.11 Aligned_cols=213 Identities=25% Similarity=0.364 Sum_probs=178.9
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 56788877631 1359999999999999999999999999999999999876 468999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHH
Q 000541 917 ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP--LRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 917 ---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~vg~~~~~~LSgG 991 (1433)
...++.++|++|++.+++.+||+||+.+...++ ..+.+...+.++++++.+++.+ ..+.. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 234567899999999999999999998865432 1223344556788999999985 55544 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999865 899999999975 46778999999985 899998
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=334.25 Aligned_cols=211 Identities=30% Similarity=0.435 Sum_probs=174.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35778877653 2369999999999999999999999999999999999987 46899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000541 916 QE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. . .++.++|++|++.+++.+|++||+.+....+. .....+.++++++.+ ++.+..++. ...|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 32 1 24569999999999999999999988654321 122334566777777 465555544 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999974 46778999999985 899988
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=344.99 Aligned_cols=218 Identities=21% Similarity=0.316 Sum_probs=180.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67899998874110 012369999999999999999999999999999999999987 56999999998764
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000541 916 Q-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN--PLRQALVGLPGVSG 987 (1433)
Q Consensus 916 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~--~~~~~~vg~~~~~~ 987 (1433)
. ...++.+||++|++. .+...||+|++.|..... ..+.++..+.++++++.+||. +..++. .+.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134567999999863 334679999998865432 234455556788999999996 455544 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999964 45678999999986 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=339.93 Aligned_cols=217 Identities=26% Similarity=0.306 Sum_probs=177.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 56788887653 02359999999999999999999999999999999999876 46899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCChhHHHHHHHHHHHHcCCcccccccccCCC
Q 000541 916 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRL-----PLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG 984 (1433)
Q Consensus 916 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~ 984 (1433)
. ..+++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1235679999999988999999999976421100 00111223345678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+.+.+|++++|.+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999975 46678999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 899988875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.78 Aligned_cols=212 Identities=27% Similarity=0.350 Sum_probs=178.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999876 46899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 916 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..+.++|++|+..+++.+||+||+.+....+ .....+..+.++++++.+++.+..+.. ...||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345799999998889999999998764432 122333455688999999998766654 35799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEec-CcEEEEEcCC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGSL 1073 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~-gG~~~y~G~~ 1073 (1433)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+.+|++++|.+ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999975 56778999999985 5899987765
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=343.09 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=178.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-----ccceEEEEcCCCC-CC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 242 (1433)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999886532 2357999999853 45
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC--ccccccc
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD--VCADTMV 320 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~v 320 (1433)
...||+||+.|+....+. .+ .+....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGL----------SE------------------------EEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCC----------CH------------------------HHHHHHHHHHHHHcCCCchhhccCCc
Confidence 568999999986543211 00 01122456789999997 4455544
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
+.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. .++||++++|+..++.++||+|+
T Consensus 143 -----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 143 -----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998653 36777889999999999999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000541 401 LISDGQIVYQGPREHVLE---FFKFMGFECPK 429 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 429 (1433)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999998753 23345655544
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=347.36 Aligned_cols=206 Identities=29% Similarity=0.416 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 246 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 46999999999999999999999999999999999999987 999999998864322 2457999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.+..+..+.. .. +....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------TR------------------------EIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCchh-----
Confidence 999998754322110 00 011124567889999988887775
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 35677779999999999999999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=340.60 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=178.1
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEc
Q 000541 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYIS 236 (1433)
Q Consensus 164 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 236 (1433)
++.+.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 4455678999999999999999999999999999999999999987 9999999988754321 24699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc
Q 000541 237 QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316 (1433)
Q Consensus 237 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 316 (1433)
|++.+++.+||+||+.++....+.. .. .....++.+++.+||++..
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~ 154 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVP----------RA------------------------EREERAAEALELVGLEGWE 154 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHh
Confidence 9998899999999999875432110 00 0112345688999998777
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
++.++ .|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++
T Consensus 155 ~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~ 228 (269)
T cd03294 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLG 228 (269)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 77665 59999999999999999999999999999999999999999999998653 3567777899999999999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 000541 397 DDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~~~~~ 417 (1433)
|++++|++|++++.|+++++.
T Consensus 229 d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 229 DRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=331.45 Aligned_cols=206 Identities=26% Similarity=0.378 Sum_probs=172.6
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 5678887763 11369999999999999999999999999999999999876 468999999987542
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 917 E------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 917 ~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ..++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 245679999999999999999999988754331 223334456788999999987666553 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|.+ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999974 45567899999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=342.48 Aligned_cols=205 Identities=20% Similarity=0.235 Sum_probs=151.1
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcC
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 911 (1433)
.|..+.+.+|++.++.. .-+++.+++..+..-+..+++|+||+||||+++++.|..+ +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 34568889998776421 1168899999999999999999999999999999999766 4577776655
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 912 YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 912 ~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
++.++|..|..+-+..+.|.+- .+-..++ |.. . ++..++-+..+||..- +.-. .+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG~-~----~ee~r~hl~~~Gl~g~---la~~-si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PGK-T----EEEIRRHLGSFGLSGE---LALQ-SIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CCC-C----HHHHHHHHHhcCCCch---hhhc-cccccCCc
Confidence 4568999998665555555433 2333332 211 1 2234566778888642 1111 25689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||-||.+|.....+|.+|+|||||+.||-.+-..+.+.|++. +..||+++|+-+ -+-..|+++++..+|.-.-..|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999876 457999999843 2455689999998643333334
Q ss_pred C
Q 000541 1072 S 1072 (1433)
Q Consensus 1072 ~ 1072 (1433)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 3
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=342.70 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=172.5
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc---c----ccceEEEeccCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE---T----FARISGYCEQNDI 931 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~----~~~~~gyv~Q~d~ 931 (1433)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 34579999999999999999999999999999999999887 4589999999875421 1 1356999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000541 932 HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1011 (1433)
Q Consensus 932 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~L 1011 (1433)
+++.+||+||+.+....+ ........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|+||+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999998865432 1223334456788999999987777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1012 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1012 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999975 46678999999985 899998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.38 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=175.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999887 9999999998765432 2459999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++....+.. .+... ....+ ..+....++.+++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~-------~~~~~------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (236)
T cd03219 90 LTVLENVMVAAQARTGS-------GLLLA------RARRE-----------EREARERAEELLERVGLADLADRPAG--- 142 (236)
T ss_pred CCHHHHHHHHHhhcccc-------ccccc------ccccc-----------HHHHHHHHHHHHHHcCccchhhCChh---
Confidence 99999999875432100 00000 00000 00112235678899999877666554
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++.+++|++++|++
T Consensus 143 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 143 --ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999999864 356677799999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=361.66 Aligned_cols=216 Identities=28% Similarity=0.430 Sum_probs=177.3
Q ss_pred cCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEE
Q 000541 830 PFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMI 909 (1433)
Q Consensus 830 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i 909 (1433)
|.-...++|+|++|.++.. +..+|+|+|++|+|||.+||+|+||||||||+|+|+|+.+ +.+|+|++
T Consensus 466 ~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 3344579999999998632 2369999999999999999999999999999999999988 56999999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCC-------ccccccc
Q 000541 910 SGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQAL 979 (1433)
Q Consensus 910 ~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~ 979 (1433)
||++..+ ..+|+.+|||+|++.++. -|++||+.++. | +.+.+ .+.++++..|. ..-.++.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATDE----EIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhcccccccc
Confidence 9998654 567899999999987764 59999998752 2 22222 22233333332 2234566
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhccee
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ 1059 (1433)
+|.. ..+||||||||++|||+|+++|+||+||||||+||+.+.+.|++.|+++. .|+|+|+++|+++ .+..+|+++
T Consensus 603 v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 6654 46899999999999999999999999999999999999999999999985 5799999999975 688999999
Q ss_pred EEecCcEEEEEcCC
Q 000541 1060 LLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1060 ll~~gG~~~y~G~~ 1073 (1433)
+|++ |+++..|+.
T Consensus 679 Vl~~-Gkiv~~gs~ 691 (709)
T COG2274 679 VLDQ-GKIVEQGSH 691 (709)
T ss_pred EccC-CceeccCCH
Confidence 9985 899999996
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=340.10 Aligned_cols=215 Identities=20% Similarity=0.333 Sum_probs=180.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 488999998763 2469999999999999999999999999999999999976 4689999999875
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000541 915 KQE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 915 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~L 988 (1433)
... ..++.++|++|+..+++.+||.||+.+...... ..+....++.+.++++.+++.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988899999999987543211 1222333456778899999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999964 56678999999985 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=310.15 Aligned_cols=207 Identities=29% Similarity=0.444 Sum_probs=175.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc---ceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 245 (1433)
+++|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||++++++.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 56999999999999999999999999999999999999998 99999999999988764 4568999998887778
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+|-+.++..-.+.+.. ..+...+++.+|...++.+.+.. ..
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~R-----~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAGR-----DY 133 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhcc-----ch
Confidence 999999998643322111 00122345667777777776653 34
Q ss_pred CCCchhHhhHHHHHHHHhC------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 326 RGISGGQKKRVTTGEMMVG------PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~------~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+.|||||||||.+||.|+. ++++||||||||+||.....++++..|++++. +..|+.+.|+.+.+..+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhee
Confidence 5799999999999999974 45699999999999999999999999999874 456667899999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=340.86 Aligned_cols=224 Identities=25% Similarity=0.384 Sum_probs=181.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------cccceEEEEcCCC-CC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------VPQRTAAYISQHD-NH 241 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 241 (1433)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+++.. ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1235799999985 34
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMV 320 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 320 (1433)
+...||.||+.|+.+..+.. +. +....++.+++.+||. +..++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------KE------------------------KAEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhccCCc
Confidence 44579999999976543210 00 1112356688899996 3445444
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.||++++|+.+++.++||+|+
T Consensus 143 -----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 143 -----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred -----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999998754 35677779999999999999999
Q ss_pred EecCCeEEEecChhHHH---HHHHhcCCCCCCCCChhhHH
Q 000541 401 LISDGQIVYQGPREHVL---EFFKFMGFECPKRKGVADFL 437 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 437 (1433)
+|++|+++++|+++++. +.++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999875 34556777776654444433
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=341.58 Aligned_cols=215 Identities=26% Similarity=0.349 Sum_probs=180.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +.+.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378999998773 12359999999999999999999999999999999999887 4689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.+||++|++. .++..||.|++.|..... ..+....++.++++++.+++.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223467999999863 455689999998764321 2233344456789999999987777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999964 45678999999985 899999
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 985
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=312.52 Aligned_cols=214 Identities=22% Similarity=0.379 Sum_probs=184.3
Q ss_pred ccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc----ceEEEEcCC
Q 000541 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYISQH 238 (1433)
Q Consensus 163 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~ 238 (1433)
.++.+++++++|||+.+++||+++++|||||||||...++.|+..|+ +|+|.++|.+++.+... .-+||+||+
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccccccc
Confidence 34556788999999999999999999999999999999999999998 99999999999877553 348999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
+..|-.+||+|||.-..+.+... .. ..+.+...+.+|+.|+|.|+++.
T Consensus 88 ~SIFr~LtV~dNi~~vlE~~~~d--------~~------------------------~~~~~~~l~~LL~ef~i~hlr~~ 135 (243)
T COG1137 88 ASIFRKLTVEDNIMAVLEIREKD--------LK------------------------KAERKEELDALLEEFHITHLRDS 135 (243)
T ss_pred chHhhcCcHHHHHHHHHhhhhcc--------hh------------------------HHHHHHHHHHHHHHhchHHHhcC
Confidence 99999999999998776543210 00 01122346789999999999987
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.-. .||||||+|+-|||||+.+|+.++||||++|+||-+..+|-+.++.+.+ .+.-|+..-|+..|+..+|||
T Consensus 136 ~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dR 208 (243)
T COG1137 136 KAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDR 208 (243)
T ss_pred ccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhhe
Confidence 654 5999999999999999999999999999999999999999999999865 355566677999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000541 399 IILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~ 418 (1433)
.+++++|++..+|+++++.+
T Consensus 209 aYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 209 AYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEEEecCeEEecCCHHHHhc
Confidence 99999999999999999864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.55 Aligned_cols=209 Identities=34% Similarity=0.496 Sum_probs=174.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35778887663 236999999999999 999999999999999999999877 46899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ...++.++|++|++.+++.+||.|++.+....+. .+..+.++.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345678999999999999999999988655431 222333456788999999987766553 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|.+ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999976 599999999975 45567899999985 7888754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=317.08 Aligned_cols=213 Identities=27% Similarity=0.398 Sum_probs=177.0
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|++..| ++.++|+|||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 6778887655 34689999999999999999999999999999999999987 45899999999875
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000541 916 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE-LNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..++-++||||....||.+||+|||..++..+.. +...+...+++.+.+- |.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456799999999999999999999987655422 1112222666776663 5555565543 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||||.|+|||||+++|++|+|||||.||-|.-..+|.+.|+++.++ |.||+.+-+... ...+..|+.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999966 779999988754 45678999999985 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
.|+..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99863
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=334.70 Aligned_cols=210 Identities=29% Similarity=0.411 Sum_probs=174.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999887 9999999988754332 3569999999988889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.++....+...+ ... .+....++.+++.+||++..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER------PPE------------------------AEIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhcccccc------CCH------------------------HHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 9999987543211000 000 0011234568899999876666654 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++||.++|+..++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999998653 356677789999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=333.12 Aligned_cols=206 Identities=21% Similarity=0.388 Sum_probs=173.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIG 243 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 243 (1433)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 346999999999999999999999999999999999999987 9999999988754332 246999999998999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
.+||+||+.+.....+. .+. +....++.+++.+||++..++.++
T Consensus 89 ~~tv~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 132 (232)
T cd03218 89 KLTVEENILAVLEIRGL----------SKK------------------------EREEKLEELLEEFHITHLRKSKAS-- 132 (232)
T ss_pred cCcHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhhCChh--
Confidence 99999999886432211 000 011234668889999877766654
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.+++|++++|+
T Consensus 133 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~ 207 (232)
T cd03218 133 ---SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIY 207 (232)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999998864 35677778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+.+++.
T Consensus 208 ~G~i~~~~~~~~~~ 221 (232)
T cd03218 208 EGKVLAEGTPEEIA 221 (232)
T ss_pred CCeEEEEeCHHHhh
Confidence 99999999987753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.44 Aligned_cols=214 Identities=26% Similarity=0.379 Sum_probs=180.3
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999876 46899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
.. ..++.++|++|++.+++.+||.||+.+...++. ..+.++.+..++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134679999999988899999999987643321 122334455678899999997765554 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.+.|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999974 57788999999985 8999988
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=332.81 Aligned_cols=205 Identities=29% Similarity=0.412 Sum_probs=173.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCCCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHDNHIG 243 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 243 (1433)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 9999999998764321 356999999998899
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
.+||+||+.++....+. ... .....++.+++.+||++..+..+.
T Consensus 96 ~~t~~e~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (233)
T cd03258 96 SRTVFENVALPLEIAGV----------PKA------------------------EIEERVLELLELVGLEDKADAYPA-- 139 (233)
T ss_pred CCcHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHCCChhhhhcChh--
Confidence 99999999886543211 000 011234568899999877766554
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. ++++|++++|+.+++.+++|++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 69999999999999999999999999999999999999999999997653 35677778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=365.03 Aligned_cols=215 Identities=27% Similarity=0.435 Sum_probs=182.1
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+|+|+.. ++..+|+|+||+++|||.|||+||||+||||+.++|-...+ |.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 479999999999754 34679999999999999999999999999999999998887 669999999999
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH-----HHHHHHHHcCCcccccccccCCCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM-----FIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
+++ ..+++.+|+|.|++.+|. -||+||+.|+.. ..+.++... .+++.+ .++.+-.|+.||..|
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG- 602 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKG- 602 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCcc-
Confidence 765 456789999999999986 499999999753 223332221 122223 345566899999876
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++|||||++||.||+|||.||.||+++...|.++|.++.+ ++|||++.|+. ...+.+|+|+++++ |
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVIDK-G 678 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEcC-C
Confidence 47999999999999999999999999999999999999999999998865 59999999985 57899999999986 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|..
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 99999963
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.91 Aligned_cols=218 Identities=25% Similarity=0.305 Sum_probs=179.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++... ...+.+|+|||+++++||++||+|+||||||||+++|+|... +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 68899998884210 011359999999999999999999999999999999999887 46899999998763
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 Q-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
. ..+++.+|||+|++. .+...||+||+.|..... ..+..+.++.++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999852 333579999998875322 223344456788999999996 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|.+ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999975 56778999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.94 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=172.7
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+++|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5678887763 2469999999999999999999999999999999999876 468999999987632
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 917 -----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 917 -----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
...++.++|++|++.+++.+|++||+.+...... .....+.++.++++++.+++.+..+..+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345679999999988999999999987642111 1223334456788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877999999999975 56678999999986 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=315.64 Aligned_cols=212 Identities=24% Similarity=0.407 Sum_probs=191.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+++++|+.+. +++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|+|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5677776654 46789999999999999999999999999999999999988 56999999999887
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 916 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
+. .+.++||.|.+.-++|.+||.|.|.|-|.|+ .++..+.+...+.+|+.+++.......+ +.||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 54 3456899999999999999999999999987 4567777788999999999998887764 6799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
+.+-.+++++|++++||||+|||||.+.+.+-+.+.++.++|.|||+++|+.. .+-++||++++|++ |+.|.+|++
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999999999999999999964 57788999999986 899999997
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=330.15 Aligned_cols=209 Identities=24% Similarity=0.321 Sum_probs=174.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788888762 12359999999999999999999999999999999999886 56899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. .+++.++|++|++.+++..|++|++.+....+ ..+..+..+.++++++.+++.+..++. ...||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 13567999999998888999999998865432 122333445678899999998766654 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999877899999999975 45667899999986 6753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.06 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=172.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888876310 001259999999999999999999999999999999999876 46899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 Q------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
. ..+++.++|++|++ .+.+.+||+||+.+......+. ......+...+++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4667899999998765433211 11111122235788888884 444544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|.+ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 899999999975 45567999999985 7
Q ss_pred EEEEEc
Q 000541 1066 QEIYVG 1071 (1433)
Q Consensus 1066 ~~~y~G 1071 (1433)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=344.88 Aligned_cols=206 Identities=27% Similarity=0.392 Sum_probs=177.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 245 (1433)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999988 999999998875422 235799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.|.++..+... .+....++.+++.+||++..++.++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~---- 132 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG---- 132 (301)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh----
Confidence 99999998765432100 0011235678999999988877765
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+||+++|++++|||||+|||+.++..+.+.++++. . +++|+.++|..+++.++||+|++|++|
T Consensus 133 -~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~-~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 133 -QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--K-DKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999874 2 467788999999999999999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.61 Aligned_cols=195 Identities=24% Similarity=0.367 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999998875432 235799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++.+..+.. .. +....++.+++.+||++..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------PR------------------------DANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh-
Confidence 9999999999875432110 00 011234568899999877776654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999998854 3 566777999999999999999999
Q ss_pred cCCeE
Q 000541 403 SDGQI 407 (1433)
Q Consensus 403 ~~G~i 407 (1433)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=342.16 Aligned_cols=218 Identities=25% Similarity=0.344 Sum_probs=179.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998884110 011359999999999999999999999999999999999887 56899999998763
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 Q-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
. ..+++.+||++|++. .+...||.|++.|..... ..+..+.++++.++++.+++. +..+.. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 134567999999862 333469999999875432 233445566788999999995 455543 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999974 46678999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 222 i~~~g~~ 228 (288)
T PRK13643 222 IISCGTP 228 (288)
T ss_pred EEEECCH
Confidence 9999986
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.80 Aligned_cols=200 Identities=31% Similarity=0.454 Sum_probs=169.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 46999999999999999999999999999999999999887 9999999988754332 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.++.+..+.. .. +....++.+++.+||++..+..++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KD------------------------EIDERVREVAELLQIEHLLDRKPK-----Q 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhCChh-----h
Confidence 99998865432110 00 011234668899999877776665 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|++++|+.+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 56677789999999999999999999999
Q ss_pred EEec
Q 000541 408 VYQG 411 (1433)
Q Consensus 408 v~~G 411 (1433)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=336.17 Aligned_cols=214 Identities=21% Similarity=0.273 Sum_probs=180.1
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ .+.+|+|+|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478999998773 2469999999999999999999999999999999999877 4589999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHHHHcCCcccc-
Q 000541 915 KQ----------------ETFARISGYCEQNDIHSPNVTVYESLLYSAW-LRLPLEVDSPTRKMFIEEVMELVELNPLR- 976 (1433)
Q Consensus 915 ~~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~-lr~~~~~~~~~~~~~v~~vl~~l~l~~~~- 976 (1433)
.. ..+++.++|++|++.+++.+||+||+.+... .. ....+..++.+.++++.+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1335679999999999999999999987542 21 122344456678899999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhc
Q 000541 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD 1056 (1433)
Q Consensus 977 ~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd 1056 (1433)
+.. ...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 433 3579999999999999999999999999999999999999999999999877999999999975 4566789
Q ss_pred ceeEEecCcEEEEEcCC
Q 000541 1057 ELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1057 ~~~ll~~gG~~~y~G~~ 1073 (1433)
++++|.+ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999985 899998875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=345.59 Aligned_cols=228 Identities=26% Similarity=0.389 Sum_probs=185.3
Q ss_pred CCCCCceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeeceEEEEeCCeEEEEEcCCCCc
Q 000541 115 GISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASG 194 (1433)
Q Consensus 115 ~~~~p~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSG 194 (1433)
.+..|.-.|+|+|++++.. .+++||+++||+|++||-+||+|+||||
T Consensus 344 ~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred CcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCCC
Confidence 5566667899999998752 2345999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhh
Q 000541 195 KTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271 (1433)
Q Consensus 195 KSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 271 (1433)
|||+|++|.++.+ + +|+|.+||+++.+... ++.||||||+.. +.+-||.+||.+|..-- -..++-
T Consensus 391 KSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~-LFndTIl~NI~YGn~sa-------s~eeV~ 458 (591)
T KOG0057|consen 391 KSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSV-LFNDTILYNIKYGNPSA-------SDEEVV 458 (591)
T ss_pred HHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccc-ccchhHHHHhhcCCCCc-------CHHHHH
Confidence 9999999999998 5 9999999999877654 578999999765 45669999999974211 112222
Q ss_pred HHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEE
Q 000541 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFM 351 (1433)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illl 351 (1433)
+..|.++ ..|.+. .|++..+|.||+++.. |||||||||++|||++.+|+|+++
T Consensus 459 e~~k~a~-----------------------~hd~i~---~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 459 EACKRAG-----------------------LHDVIS---RLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred HHHHHcC-----------------------cHHHHH---hccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEEe
Confidence 2222221 122232 3899999999998875 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHH
Q 000541 352 DEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 352 DEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 418 (1433)
|||||.||+.|..++++.+.+. .++.|+|.+.|+. .+..-||+|++|++|++...|+.+|++.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDV---MSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999983 3456666677776 4567799999999999999999999875
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=343.51 Aligned_cols=218 Identities=24% Similarity=0.304 Sum_probs=179.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|+++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 77899999884210 011359999999999999999999999999999999999987 45899999986531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 000541 916 ---------------------------QETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967 (1433)
Q Consensus 916 ---------------------------~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl 967 (1433)
....++.+|||+|++ ..+...||+|++.|..... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3445679999998865432 234445566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000541 968 ELVELN-PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046 (1433)
Q Consensus 968 ~~l~l~-~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1046 (1433)
+.+||. +..+.. ...||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566654 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1047 PSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1047 p~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++ .+.+.+|++++|.+ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 64 46788999999975 899999986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=331.52 Aligned_cols=212 Identities=27% Similarity=0.396 Sum_probs=177.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 QE--TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~~--~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
.. ...+.++|++|++.+++.+|++|++.+.+..+ ........+.++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22356899999988888999999998765432 1223334456788999999987666543 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. + +.+|++++|.+ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999985 58999999999753 3 45999999985 89999887
Q ss_pred C
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 5
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=333.91 Aligned_cols=214 Identities=24% Similarity=0.317 Sum_probs=176.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcCc
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISGY 912 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 912 (1433)
++++|+++.++ +..+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56888888763 235999999999999999999999999999999999987632 12899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc----ccccccccCC
Q 000541 913 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN----PLRQALVGLP 983 (1433)
Q Consensus 913 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~vg~~ 983 (1433)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+..+.++.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 133567999999988888 999999988654331 112234445678899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|.+
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999975 46678999999986
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=340.85 Aligned_cols=215 Identities=26% Similarity=0.400 Sum_probs=180.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999998873 12359999999999999999999999999999999999887 5689999999876
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000541 915 KQ-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 915 ~~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~L 988 (1433)
.. ..+++.+||++|++. .+...||+|++.+..... ..+..+..+.++++++.+++.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999863 345679999998764322 223344456788999999998877765 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999975 35568999999986 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=318.84 Aligned_cols=207 Identities=28% Similarity=0.384 Sum_probs=180.0
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET----FARISGYCEQNDIHSP 934 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~----~~~~~gyv~Q~d~~~~ 934 (1433)
+...+++|||+++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++.... .+..++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45689999999999999999999999999999999999988 56999999999875422 2445788999999999
Q ss_pred CCCHHHHHHHHHHhc--------CCCC-CChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000541 935 NVTVYESLLYSAWLR--------LPLE-VDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVAN 1005 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr--------~~~~-~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~ 1005 (1433)
.+||.||+..++..+ .+.. ...++..++..++|+.+||.+.+|...| +||+||||||.|||||+++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 999999998876533 1211 1234455678889999999999999865 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 1006 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1006 p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+.+ -++..+|++++|.. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999974 799999999976 47889999999986 8999999973
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.72 Aligned_cols=199 Identities=29% Similarity=0.429 Sum_probs=163.6
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCC--CCCCH
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHS--PNVTV 938 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~--~~lTv 938 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. +..||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 46899999998653 3456799999997653 34899
Q ss_pred HHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000541 939 YESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsg 1017 (1433)
+||+.+....+... .......++.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 011223345678899999998766654 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 1018 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 1018 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999878999999999975 46677899999974 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=329.48 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=177.0
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5677777653 2469999999999999999999999999999999999876 568999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000541 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRL 996 (1433)
Q Consensus 917 ~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl 996 (1433)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2578999999988899999999987654331 11 234678899999987766653 57999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCC
Q 000541 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 997 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~ 1074 (1433)
+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++.|++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999975 46678999999985 8999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=341.67 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCC-----------------------
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE----------------------- 225 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~----------------------- 225 (1433)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 8999999875421
Q ss_pred ----CcccceEEEEcCCC-CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhh
Q 000541 226 ----FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEAS 300 (1433)
Q Consensus 226 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1433)
...++.++||+|++ ..+...||+|||.|+....+.. + .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H------------------------HHHH
Confidence 01235699999985 4556789999999976533210 0 0111
Q ss_pred HHHHHHHHHhCCC-ccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 000541 301 VVTDYILKILGLD-VCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG 379 (1433)
Q Consensus 301 ~~~~~il~~lgL~-~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~ 379 (1433)
..++.+++.+||+ +..+..+ ..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QG 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CC
Confidence 2356788999996 5556554 46999999999999999999999999999999999999999999999863 35
Q ss_pred eEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHH
Q 000541 380 TTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 380 t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
++|++++|+.+++.+++|+|++|++|+++++|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 67777999999999999999999999999999998875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=344.86 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=179.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|+++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999885210 012359999999999999999999999999999999999987 5689999999765
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc
Q 000541 915 KQ-------------------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN 973 (1433)
Q Consensus 915 ~~-------------------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~ 973 (1433)
.. ...++.+|||+|++ .+++ .||+||+.|..... ..+.++..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3454 59999998864321 223344455788899999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000541 974 -PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIV 1052 (1433)
Q Consensus 974 -~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~ 1052 (1433)
+..+.. ...||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455443 3579999999999999999999999999999999999999999999999877999999999964 466
Q ss_pred HHhcceeEEecCcEEEEEcCC
Q 000541 1053 EAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1053 ~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
+.+|++++|.+ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 78999999986 899999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.37 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=169.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999988753 246799999998888899999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||+.++....+.. .. .....++.+++.+||++..+..++ .|
T Consensus 92 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVP----------KA------------------------EARERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 9999875432110 00 011234568899999877676654 59
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS--DGQ 406 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 406 (1433)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987543 35667778999999999999999999 799
Q ss_pred EEEecCh
Q 000541 407 IVYQGPR 413 (1433)
Q Consensus 407 iv~~G~~ 413 (1433)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=341.32 Aligned_cols=218 Identities=23% Similarity=0.361 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------cccceEEEEcCCC-C
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------VPQRTAAYISQHD-N 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 240 (1433)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987531 1135699999985 3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 319 (1433)
.+...||+||+.|+.+..+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EE------------------------DAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCChhhhhCC
Confidence 454679999999875432210 00 0112356789999997 455655
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .++||++++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 5 469999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHH---HHHHhcCCCCCC
Q 000541 400 ILISDGQIVYQGPREHVL---EFFKFMGFECPK 429 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 429 (1433)
++|++|+++++|+++++. ..+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999998874 234444554443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=328.07 Aligned_cols=211 Identities=25% Similarity=0.350 Sum_probs=172.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888876311 112469999999999999999999999999999999999877 46899999998754
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000541 916 QE---T---FA-RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 916 ~~---~---~~-~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~L 988 (1433)
.. . ++ +.++|++|++.+++.+||+|++.+....+. ....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 568999999988889999999988654321 122333456788999999987666553 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999975 3455799999985 665
Q ss_pred E
Q 000541 1068 I 1068 (1433)
Q Consensus 1068 ~ 1068 (1433)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=329.35 Aligned_cols=203 Identities=25% Similarity=0.438 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754332 3469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHh-CCCccccccccCc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDE 323 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 323 (1433)
+||+||+.++....+ .. + ....++.+++.+ ++++..++.++
T Consensus 90 ~t~~~~l~~~~~~~~---~~----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~-- 131 (222)
T cd03224 90 LTVEENLLLGAYARR---RA----K-----------------------------RKARLERVYELFPRLKERRKQLAG-- 131 (222)
T ss_pred CcHHHHHHHHhhhcC---ch----h-----------------------------HHHHHHHHHHHHHhhhhhhhCchh--
Confidence 999999998653221 00 0 001233456666 46665565554
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+..++.+++|+|++|+
T Consensus 132 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 5999999999999999999999999999999999999999999999864 35677778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|+++..|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=329.50 Aligned_cols=203 Identities=29% Similarity=0.431 Sum_probs=172.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 246 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999987 999999998875321 2356999999998888999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.+..+..+.. .. +....++.+++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLP----------KS------------------------EIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 999999865432210 00 011234568889999877777665
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ + ++++.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998753 3 677778999999999999999999999
Q ss_pred EEEecChhHH
Q 000541 407 IVYQGPREHV 416 (1433)
Q Consensus 407 iv~~G~~~~~ 416 (1433)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=334.89 Aligned_cols=206 Identities=21% Similarity=0.279 Sum_probs=176.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 489999998873 2359999999999999999999999999999999999876 4589999999765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
. ..++.++|++|++.+++.+||+||+.+... ...+..++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK---------GQWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc---------chHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999988888999999987421 01234577899999998766654 3579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999975 46677999999985 899988764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=336.72 Aligned_cols=216 Identities=22% Similarity=0.360 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCC-CCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 244 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998764322 35799999996 46788
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.|+.+..+. .. .+....++.+++.+||++..+..++
T Consensus 97 ~tv~eni~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13650 97 ATVEDDVAFGLENKGI----------PH------------------------EEMKERVNEALELVGMQDFKEREPA--- 139 (279)
T ss_pred ccHHHHHHhhHHhCCC----------CH------------------------HHHHHHHHHHHHHCCCHhHhhCCcc---
Confidence 9999999987543221 00 0111235678999999877776654
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .++||++++|+.+++ ..+|+|++|++
T Consensus 140 --~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 140 --RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 356777788988888 58999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 000541 405 GQIVYQGPREHVLE---FFKFMGFECP 428 (1433)
Q Consensus 405 G~iv~~G~~~~~~~---~f~~~G~~~p 428 (1433)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999988753 2334454433
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=332.74 Aligned_cols=212 Identities=23% Similarity=0.341 Sum_probs=176.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
-++++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 378899998763 2369999999999999999999999999999999999877 4689999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000541 915 KQE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 915 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~vg~~~~~~LS 989 (1433)
... ..++.++|++|+..+++.+||.||+.+..... ......+.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 13467999999998899999999998754221 1122234466777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999974 57788999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9986
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=326.46 Aligned_cols=198 Identities=26% Similarity=0.397 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999887 9999999987754 2346799999999888999999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||+.+..+..+.. .. +....++.+++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLK----------KE------------------------EARRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCC----------hH------------------------HHHHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 9998865432210 00 011234568889999877776554 59
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 408 (1433)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+.+++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998764 2567777999999999999999999999998
Q ss_pred Eec
Q 000541 409 YQG 411 (1433)
Q Consensus 409 ~~G 411 (1433)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=335.26 Aligned_cols=218 Identities=22% Similarity=0.266 Sum_probs=179.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999877 5689999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC----------CCC--ChhHHHHHHHHHHHHcCCcccccc
Q 000541 915 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----------LEV--DSPTRKMFIEEVMELVELNPLRQA 978 (1433)
Q Consensus 915 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~----------~~~--~~~~~~~~v~~vl~~l~l~~~~~~ 978 (1433)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999886432110 000 111233457788999999776665
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcc
Q 000541 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDE 1057 (1433)
Q Consensus 979 ~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~ 1057 (1433)
. ...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999875 899999999975 56678999
Q ss_pred eeEEecCcEEEEEcCCC
Q 000541 1058 LFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1058 ~~ll~~gG~~~y~G~~~ 1074 (1433)
+++|.+ |++++.|+..
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 8999998863
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=331.54 Aligned_cols=204 Identities=24% Similarity=0.362 Sum_probs=169.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCcceEEEECCccCCCCc-----ccceEEEEcCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL-----DSSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQH 238 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 238 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 46999999999999999999999999999999999999 776 999999998875432 23579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
+.++ .+||+||+.++.+..+... . .+....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------K------------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8777 8999999998754321100 0 0011234568889999876555
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.+. ...|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+.+++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 430 247999999999999999999999999999999999999999999999854 3 6777799999999999999
Q ss_pred EEEecCCeEEEecChhH
Q 000541 399 IILISDGQIVYQGPREH 415 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~ 415 (1433)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.73 Aligned_cols=193 Identities=27% Similarity=0.389 Sum_probs=162.2
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc---ccccceEEEeccCCC-CCCCC
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDI-HSPNV 936 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~-~~~~l 936 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999876 468999999987542 234567899999974 46678
Q ss_pred CHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000541 937 TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016 (1433)
Q Consensus 937 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTs 1016 (1433)
|++||+.+....+ .......++.++++++.+++.+..+.. ...||||||||++||++|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 122233345678899999997766654 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 1017 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 1017 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999974 455669999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=340.48 Aligned_cols=218 Identities=21% Similarity=0.322 Sum_probs=179.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998884210 012359999999999999999999999999999999999887 4689999999876
Q ss_pred Cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000541 915 KQ-------ETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPG 984 (1433)
Q Consensus 915 ~~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~ 984 (1433)
.. ..+++.+|||+|++ .+++ .||.||+.|..... ..+..+..+.++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13456799999985 3444 59999998864322 223444556788999999996 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|.+
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 4899999999964 46678999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=332.45 Aligned_cols=214 Identities=29% Similarity=0.419 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999887 999999998876543 135699999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++..... .....+ .+... ......++.+++.+||++..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~-----~~~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-----STWRSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc-----hhhhhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999988642110 000000 00000 001123456789999987666555
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 3566777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=348.85 Aligned_cols=208 Identities=23% Similarity=0.332 Sum_probs=177.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD 239 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 239 (1433)
+...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|+.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 4456899999999999999999999999999999999999987 9999999998765432 24699999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+++.+||+||+.|+.+..+.. .. +....++.+++.+||++..++.
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGIN----------AE------------------------ERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhcC
Confidence 9999999999999976543210 00 0112346689999998777765
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+. .|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|+|
T Consensus 162 ~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 162 PD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEE
Confidence 54 69999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|+++..|+++++.
T Consensus 236 ~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEECCEEEecCCHHHHH
Confidence 999999999999998874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=331.36 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 35689999999899999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc--cccccccCc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV--CADTMVGDE 323 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~~ 323 (1433)
||+||+.++.+..+.. .. +....++.+++.+||++ ..++.+
T Consensus 91 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~l~l~~~~~~~~~~--- 133 (242)
T cd03295 91 TVEENIALVPKLLKWP----------KE------------------------KIRERADELLALVGLDPAEFADRYP--- 133 (242)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCCcHHHHhcCh---
Confidence 9999999865432110 00 01123456888999985 445444
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|+|++|+
T Consensus 134 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 134 --HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 35677778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=336.31 Aligned_cols=204 Identities=25% Similarity=0.325 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 244 (1433)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999987 9999999998764332 356999999863 5667
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||+||+.|+.+..+. .+ .+....++.+++.+||.+..++.+.
T Consensus 95 ~tv~e~l~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~--- 137 (274)
T PRK13647 95 STVWDDVAFGPVNMGL----------DK------------------------DEVERRVEEALKAVRMWDFRDKPPY--- 137 (274)
T ss_pred CcHHHHHHhhHHHcCC----------CH------------------------HHHHHHHHHHHHHCCCHHHhcCChh---
Confidence 8999999986532211 00 0011235678899999877776665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ . +.||+.++|+.+++.++||+|++|++
T Consensus 138 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 138 --HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 3 56777799999999999999999999
Q ss_pred CeEEEecChhHH
Q 000541 405 GQIVYQGPREHV 416 (1433)
Q Consensus 405 G~iv~~G~~~~~ 416 (1433)
|++++.|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=338.29 Aligned_cols=216 Identities=24% Similarity=0.320 Sum_probs=181.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37899999887411 12359999999999999999999999999999999999987 5699999999876
Q ss_pred Cc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQND-IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.+||++|++ ..++..||+||+.|..... ..+.++..+.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3677889999998865322 2334445567889999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 34 67999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9885
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=333.66 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=179.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888763 2369999999999999999999999999999999999877 46899999998653
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccccc
Q 000541 916 Q----------------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979 (1433)
Q Consensus 916 ~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~ 979 (1433)
. ...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1122334445678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcce
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDEL 1058 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~ 1058 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998865 899999999975 466789999
Q ss_pred eEEecCcEEEEEcCC
Q 000541 1059 FLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1059 ~ll~~gG~~~y~G~~ 1073 (1433)
++|.+ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=340.79 Aligned_cols=218 Identities=21% Similarity=0.395 Sum_probs=175.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------------------ccc
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------------------VPQ 229 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------------------~~~ 229 (1433)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999987 99999999886532 113
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHH
Q 000541 230 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILK 308 (1433)
Q Consensus 230 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 308 (1433)
+.++||+|++. .+...||+||+.|+....+. .. .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~----------~~------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGV----------KK------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCC----------CH------------------------HHHHHHHHHHHH
Confidence 57999999862 34456999999987532211 00 001123456889
Q ss_pred HhCCC-ccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000541 309 ILGLD-VCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387 (1433)
Q Consensus 309 ~lgL~-~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q 387 (1433)
.+||+ +..++. +..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.. +++||++++|
T Consensus 162 ~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITH 234 (320)
T ss_pred HcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEec
Confidence 99996 344444 346999999999999999999999999999999999999999999998754 3567777999
Q ss_pred ChhhHHhhcCeEEEecCCeEEEecChhHHH---HHHHhcCCCCCCC
Q 000541 388 PAPETYDLFDDIILISDGQIVYQGPREHVL---EFFKFMGFECPKR 430 (1433)
Q Consensus 388 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~ 430 (1433)
+.+++.++||+|++|++|++++.|+++++. +.++..|+.+|..
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRV 280 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChH
Confidence 999999999999999999999999998874 2344556555543
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=321.49 Aligned_cols=196 Identities=31% Similarity=0.573 Sum_probs=164.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCcc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYP 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 913 (1433)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998643 13457999999999999999999999999999999999987632 568999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 914 KKQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 914 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
... ...++.++|++|++.+++.+||+|++.+.+..+ .+.. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998754211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777777654567788999999986 888876
Q ss_pred c
Q 000541 1071 G 1071 (1433)
Q Consensus 1071 G 1071 (1433)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=345.98 Aligned_cols=211 Identities=26% Similarity=0.334 Sum_probs=179.0
Q ss_pred cccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCc----cCCCCcc-------cceE
Q 000541 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGH----DMDEFVP-------QRTA 232 (1433)
Q Consensus 164 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~----~~~~~~~-------~~~~ 232 (1433)
++.+...+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|. ++..... ++.+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3456678999999999999999999999999999999999999987 999999996 3332211 1469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCC
Q 000541 233 AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312 (1433)
Q Consensus 233 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 312 (1433)
+||+|+..+++.+||+||+.|+....+.. +. +....++++++.+||
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~----------~~------------------------~~~~~a~e~le~vgL 154 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMP----------EA------------------------ERRKRVDEQLELVGL 154 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCC
Confidence 99999999999999999999986543211 00 011235668999999
Q ss_pred CccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 000541 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPET 392 (1433)
Q Consensus 313 ~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 392 (1433)
++..|..++ .|||||||||+|||||+.+|+|+||||||+|||+.++.++.+.|+++.+.. ++||+.++|+.+++
T Consensus 155 ~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~ 228 (382)
T TIGR03415 155 AQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEA 228 (382)
T ss_pred chhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 887776665 599999999999999999999999999999999999999999999986533 56777799999999
Q ss_pred HhhcCeEEEecCCeEEEecChhHHH
Q 000541 393 YDLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 393 ~~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
.+++|+|++|++|+++..|+++++.
T Consensus 229 ~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 229 LKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=336.81 Aligned_cols=213 Identities=22% Similarity=0.331 Sum_probs=178.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ +++.+|+|||++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788888763 12359999999999999999999999999999999999877 56899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 Q----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ...++.+||++|++. .+...|+.||+.|..... ..+....++.++++++.+++.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 466789999998765332 1233444566888999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ +.+|++++|.+ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 34 67999999985 899999
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 985
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=331.22 Aligned_cols=213 Identities=24% Similarity=0.322 Sum_probs=178.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67889988763 2359999999999999999999999999999999999876 46899999998652
Q ss_pred ---------cccccceEEEeccCCCCCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 916 ---------QETFARISGYCEQNDIHSPNVTVYESLLYS-AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 916 ---------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~-a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
....++.++|++|++.+++.+||.||+.+. ...+ .....+....++++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 012345789999999999999999999643 2221 1122333456788999999987766653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999975 45677999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99998875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=339.28 Aligned_cols=219 Identities=25% Similarity=0.310 Sum_probs=179.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367889988774110 001359999999999999999999999999999999999887 5699999999875
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000541 915 KQ-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGV 985 (1433)
Q Consensus 915 ~~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~ 985 (1433)
.. ...++.+||++|++. .+..+||.|++.|....+ ....++..++++++++.+++. +..+.. .
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 123457999999863 333589999998765432 123344456788999999996 566655 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|.+ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999964 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 99999885
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=331.43 Aligned_cols=217 Identities=25% Similarity=0.288 Sum_probs=178.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 377889988763 235999999999999999999999999999999999987532 3689999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc----ccccccCCC
Q 000541 912 YPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL----RQALVGLPG 984 (1433)
Q Consensus 912 ~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~----~~~~vg~~~ 984 (1433)
.++.. ...++.+||++|++.+++.+||.||+.+....+.. ..+..+..+.++++++.+++.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888999999999886543211 11223344567889999998542 2332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. .+.+.+|++++|.+
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999975 46678999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 899998875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=331.11 Aligned_cols=219 Identities=23% Similarity=0.280 Sum_probs=175.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788887763 24699999999999999999999999999999999998421156899999998754
Q ss_pred cc---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC----CCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 QE---TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL----EVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~----~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
.. .. +..++|++|++.+++.+|++|++.+........ ..+..+..+.++++++.+++. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 12 234899999999999999999998764332110 012223345678899999997 34554321 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEA-FDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~-fd~~~ll~~gG 1065 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|.+ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877999999999975 34455 699999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 99998875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=332.18 Aligned_cols=220 Identities=25% Similarity=0.266 Sum_probs=178.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|+++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899998773 235999999999999999999999999999999999987642 3589999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000541 912 YPKK-----QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~ 985 (1433)
.++. ...+++.++|++|++.+++.+||.||+.+....+. ...+.+...+.++++++.+++.+. .+... ...
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~ 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLN--DYP 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhc--cCh
Confidence 8764 12345679999999999999999999988654321 101223334567888999887531 11111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|.+ |
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 224 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-G 224 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 699999999975 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 225 ~i~~~~~~ 232 (253)
T PRK14267 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 99999885
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=336.66 Aligned_cols=214 Identities=25% Similarity=0.378 Sum_probs=179.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678899887731 1349999999999999999999999999999999999877 56999999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 Q---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
. ...++.++|++|++. .+...||.|++.+..... ..+.+..++.++++++.+++.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 344679999998765321 2333444556789999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999975 56688999999986 899999
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 985
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=332.19 Aligned_cols=215 Identities=22% Similarity=0.250 Sum_probs=175.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998773 235999999999999999999999999999999999987642 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc----ccccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN----PLRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~vg~ 982 (1433)
.++.. ...++.++|++|++..++ .||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999987774 899999988654321 112233345678888888874 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
.+.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ .+.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999975 4667899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=341.56 Aligned_cols=229 Identities=20% Similarity=0.231 Sum_probs=183.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
-++++||+.+++............+...+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 48899999877532110000001123579999999999999999999999999999999999987 4589999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000541 915 KQE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGV 985 (1433)
Q Consensus 915 ~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~ 985 (1433)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+..+.++.++++++.+++. +..+.. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886543211 234455566788999999994 344443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
..|||||||||+||+||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999964 45567999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 899999985
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=349.53 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=177.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 244 (1433)
++++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 356999999999999999999999999999999999999987 9999999998765432 3679999999988899
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++..-... +. .... .+....++.+++.+||.+..++.+.
T Consensus 92 ~tv~e~v~~~~~~~~~--~~---~~~~-------------------------~~~~~~v~~~le~vgl~~~~~~~~~--- 138 (402)
T PRK09536 92 FDVRQVVEMGRTPHRS--RF---DTWT-------------------------ETDRAAVERAMERTGVAQFADRPVT--- 138 (402)
T ss_pred CCHHHHHHhccchhcc--cc---cCCC-------------------------HHHHHHHHHHHHHcCCchhhcCChh---
Confidence 9999999986421000 00 0000 0112346778999999887776654
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|++++|+.+++.++||++++|++
T Consensus 139 --~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 139 --SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLAD 214 (402)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999874 3 56777799999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=330.24 Aligned_cols=215 Identities=27% Similarity=0.342 Sum_probs=177.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 67888887763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 916 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-----EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-----~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.. ..++.++|++|++.+++.+||+||+.+........ ....+..+..++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 12346999999999999999999998864321100 011223345678899999998766654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 799999999975 46678999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 9988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=324.49 Aligned_cols=195 Identities=26% Similarity=0.402 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-cccceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 56999999999999999999999999999999999999887 99999999876532 123569999999988999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.+.....+. ....++.+++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999886532110 00124567888999877776654 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 356677789999999999999999999999
Q ss_pred EEec
Q 000541 408 VYQG 411 (1433)
Q Consensus 408 v~~G 411 (1433)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=334.79 Aligned_cols=207 Identities=22% Similarity=0.356 Sum_probs=173.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45899999999999999999999999999999999999887 999999998875432 135699999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++...... .... .....++.+++.+||++..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999886432100 0000 011234567889999887777665
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=332.79 Aligned_cols=213 Identities=26% Similarity=0.369 Sum_probs=178.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67889888763 2469999999999999999999999999999999999876 56899999998653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
. ...++.++|++|++.+++.+||+|++.+..... .......++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223457899999988878899999998754221 1122233456788999999987666653 5799999
Q ss_pred HHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 993 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 993 rkRl~ia~~L~------~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ +.|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999998 66899999999975 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 99998875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=327.09 Aligned_cols=195 Identities=28% Similarity=0.416 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 999999998876432 13569999999989
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++....+.. .. .....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------KK------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 99999999999875432210 00 011234668899999877666554
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++. .||++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEE
Confidence 59999999999999999999999999999999999999999999998652 3566777889888876 9999999
Q ss_pred ecCCeE
Q 000541 402 ISDGQI 407 (1433)
Q Consensus 402 L~~G~i 407 (1433)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=324.31 Aligned_cols=208 Identities=26% Similarity=0.348 Sum_probs=171.4
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
.++|+++.++ ++. .|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 5778887663 122 39999999999999999999999999999999987 568999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..++.++|++|++.+++.+||+||+.+....+.. . .+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhcccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1 2346799999999989999999999875432111 1 1233456788999999987766653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999998754 899999999974 45677999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=323.86 Aligned_cols=192 Identities=26% Similarity=0.373 Sum_probs=162.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCC-CCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 247 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 56999999999999999999999999999999999999987 9999999988754333457999999964 3557899
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.++....+. ....++.+++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 9999875432100 00124568899999887776664 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+|+.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998854 356677789999999999999999999997
Q ss_pred E
Q 000541 408 V 408 (1433)
Q Consensus 408 v 408 (1433)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=332.07 Aligned_cols=214 Identities=24% Similarity=0.294 Sum_probs=176.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999988763 235999999999999999999999999999999999987531 3689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ..+++.++|++|++.+++ .|++||+.+....+ ..+....++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988777 89999998875432 1223333456788899998843 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
...|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999974 4567799999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=347.25 Aligned_cols=207 Identities=27% Similarity=0.441 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+..+ +++++||+|++.++ .-
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~g 409 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AG 409 (559)
T ss_pred CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-cc
Confidence 37899999999999999999999999999999999999987 9999999999877654 58899999998554 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|+||||.++.... +.+...++.. -..+.+.+.-++..||.+|+.+
T Consensus 410 TireNi~l~~~~~-------------------------s~e~i~~al~---------~a~l~~~v~~p~GLdt~ige~G- 454 (559)
T COG4988 410 TIRENILLARPDA-------------------------SDEEIIAALD---------QAGLLEFVPKPDGLDTVIGEGG- 454 (559)
T ss_pred cHHHHhhccCCcC-------------------------CHHHHHHHHH---------HhcHHHhhcCCCcccchhccCC-
Confidence 9999999963210 0000100000 0012233333667899999765
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
++|||||+|||++||||+.+++++++||||++||.+|...|.+.|.++++ .+|+++++|.... ..-+|+|++|++|
T Consensus 455 ~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl~~-~~~~D~I~vld~G 530 (559)
T COG4988 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRLED-AADADRIVVLDNG 530 (559)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcChHH-HhcCCEEEEecCC
Confidence 48999999999999999999999999999999999999999999999865 3555557777644 4567999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++.+|.++++.+
T Consensus 531 ~l~~~g~~~~L~~ 543 (559)
T COG4988 531 RLVEQGTHEELSE 543 (559)
T ss_pred ceeccCCHHHHhh
Confidence 9999999999864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=336.26 Aligned_cols=215 Identities=25% Similarity=0.307 Sum_probs=180.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
-++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3789999987731 12359999999999999999999999999999999999987 4689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++..+.++++++.++|.+..+... ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865432 1233444566889999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ +.+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999975 33 56999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=322.21 Aligned_cols=224 Identities=25% Similarity=0.370 Sum_probs=195.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD 239 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 239 (1433)
+...-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.++.|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 4455799999999999999999999999999999999999998 9999999999876543 35799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.++|+.||.||..|+.+.+|.+.. +.+.+..+.|+..||+...+..
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKY 161 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcC
Confidence 999999999999999999886321 1123356689999999988766
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +.||||+||||.|||||+.+|+||+||||+|+|||--+.++-+-|.++.+.. ++||+.++|+.+|++.+.|||
T Consensus 162 p-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 162 P-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred c-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceE
Confidence 5 4699999999999999999999999999999999999999999999887765 466777999999999999999
Q ss_pred EEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhhHHHhhC
Q 000541 400 ILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVT 441 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~evt 441 (1433)
.+|.+|+|+..|+++|++. .|.+..+++|..++.
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v~ 269 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNVD 269 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcCC
Confidence 9999999999999999974 466666777777653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=336.55 Aligned_cols=206 Identities=20% Similarity=0.314 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCC-C
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHD-N 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 240 (1433)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 999999999875421 245799999985 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 319 (1433)
.+...||+||+.|+....+. .. .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKM----------NL------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCC----------CH------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 33446999999987542211 00 00112356688999996 556655
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++... .++||++++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 P-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred c-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998643 4677888999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998865
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=327.26 Aligned_cols=206 Identities=27% Similarity=0.404 Sum_probs=172.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc--cceEEEEcCCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 246 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++..++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999987 9999999988754322 246999999988889999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.+.....+. ... +....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGL----------SRA------------------------EARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhcCChh-----
Confidence 99999876533211 000 011234567889999877776665
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHh-hCCEEEEEeCCe
Confidence 59999999999999999999999999999999999999999999998643 3566777889988886 499999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
+++.|+++++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=317.76 Aligned_cols=190 Identities=58% Similarity=0.953 Sum_probs=162.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++.+ ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889999887421 012469999999999999999999999999999999999753235689999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
. ..+++.++|++|++.+++.+||+||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 344567999999998899999999998643110 49999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++.++.+.+|++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644677899999998658999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=332.22 Aligned_cols=217 Identities=26% Similarity=0.373 Sum_probs=179.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888888763 2469999999999999999999999999999999999876 46899999998653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
. ...++.++|++|+..+++.+|+.|++.+....... .........+.++++++.+++.+..++. ...||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23345689999998888889999999875311000 0111123345678899999998766665 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999975 57788999999985 8999988
Q ss_pred CCC
Q 000541 1072 SLG 1074 (1433)
Q Consensus 1072 ~~~ 1074 (1433)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=331.10 Aligned_cols=213 Identities=26% Similarity=0.358 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 46999999999999999999999999999999999999887 999999998875432 235699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++...... ...... +.. ..+....++.+++.+||++..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~~-----~~~~~~------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP-----TWRSLL------GRF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhccccccc-----chhhhh------ccc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 999999999875321000 000000 000 0001123566889999987666554
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 469999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred cCCeEEEecChhHH
Q 000541 403 SDGQIVYQGPREHV 416 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~ 416 (1433)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=325.34 Aligned_cols=198 Identities=30% Similarity=0.457 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCCCH
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 247 (1433)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 999999998875421 23579999999988899999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.+..+..+.. . .+....++.+++.+||++..+..++ .
T Consensus 96 ~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G------------------------DELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 99998864332110 0 0011235668899999877776654 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.++|+++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999854 356777799999999999999999999999
Q ss_pred EEec
Q 000541 408 VYQG 411 (1433)
Q Consensus 408 v~~G 411 (1433)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=334.73 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=176.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788888763 2359999999999999999999999999999999999887 56899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 Q-----ETFARISGYCEQNDIH-SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~-----~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
. ...++.++|++|++.. ....|+.|++.+....+ .....+..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234679999998753 44568999998764332 122333445678899999998776664 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 45677999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.53 Aligned_cols=216 Identities=27% Similarity=0.408 Sum_probs=177.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCC-CCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 244 (1433)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998765332 35799999996 36778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+|||.++.+..+.. .. +....++.+++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE------------------------EMVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCcc---
Confidence 89999999875432110 00 011235678899999887776665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|++++|+.+++. .+|++++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 3567777889888886 5999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 000541 405 GQIVYQGPREHVLE---FFKFMGFECP 428 (1433)
Q Consensus 405 G~iv~~G~~~~~~~---~f~~~G~~~p 428 (1433)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455443
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.29 Aligned_cols=205 Identities=21% Similarity=0.351 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-----ccceEEEEcCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQHDNHIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 243 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999887 999999998875421 1356999999998889
Q ss_pred CCCHHHHHHHHHHh-cCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 244 EMTVRETLAFSARC-QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
.+||+||+.++... .+. ... +....++.+++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGA----------SKE------------------------EAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999886421 110 000 01123456888999987666555
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ . +++|++++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 2 567777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.01 Aligned_cols=217 Identities=28% Similarity=0.394 Sum_probs=179.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 488999998763 2469999999999999999999999999999999999876 4689999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..+++.++|++|+..+++.+|+.||+.+........ .......++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 234567999999988888999999998753211110 0111223456788999999987666653 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 56678999999985 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.58 Aligned_cols=205 Identities=24% Similarity=0.372 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-----------cccceEEEEcC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-----------VPQRTAAYISQ 237 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q 237 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 46999999999999999999999999999999999999887 99999999887532 12356999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh-cCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc
Q 000541 238 HDNHIGEMTVRETLAFSARC-QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316 (1433)
Q Consensus 238 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 316 (1433)
++.+++.+||+||+.++... ++. .. .+....++.+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGE----------PK------------------------EEATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCcchh
Confidence 98888999999999885421 110 00 00112345678899998776
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
|+.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+++
T Consensus 139 ~~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 139 TSYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVA 211 (250)
T ss_pred hCChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhc
Confidence 66554 6999999999999999999999999999999999999999999998864 2 566777899999999999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 000541 397 DDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~~~~~ 417 (1433)
|++++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=347.10 Aligned_cols=202 Identities=22% Similarity=0.294 Sum_probs=173.9
Q ss_pred ceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000541 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE---T----FARISGYCEQNDIH 932 (1433)
Q Consensus 860 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~----~~~~~gyv~Q~d~~ 932 (1433)
...+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... . .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999987 5689999999876431 1 13569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000541 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012 (1433)
Q Consensus 933 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LD 1012 (1433)
++.+||+||+.|....+. .+.++.++.++++++.++|.+..++.+ ..|||||||||+|||+|+.+|++|+||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765431 233444567889999999988777653 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1013 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1013 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999975 56778999999985 899998875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.60 Aligned_cols=220 Identities=29% Similarity=0.374 Sum_probs=180.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCcc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYP 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 913 (1433)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899988763 246999999999999999999999999999999999987643 236999999986
Q ss_pred CCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHHHcCCcccccccc
Q 000541 914 KKQ--------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-----EVDSPTRKMFIEEVMELVELNPLRQALV 980 (1433)
Q Consensus 914 ~~~--------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-----~~~~~~~~~~v~~vl~~l~l~~~~~~~v 980 (1433)
+.. ...++.++|++|++.+++.+||+|++.+......+. ....+..+..++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999998899999999998753211110 1112333456788999999987766653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhccee
Q 000541 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 981 g~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ 1059 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999864 899999999975 4677899999
Q ss_pred EEecCcEEEEEcCCC
Q 000541 1060 LLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1060 ll~~gG~~~y~G~~~ 1074 (1433)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 8999998863
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=329.32 Aligned_cols=220 Identities=23% Similarity=0.311 Sum_probs=176.0
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC---CCeeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~---~~~~~G~I~i~ 910 (1433)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 4589999998873 2359999999999999999999999999999999999743 11358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
|+++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ ..
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987642 133567999999988877 5999999887543211 11223345677889998885421111111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|.+ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999854 799999999975 46678999999986 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 99998875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=333.16 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=181.6
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..+.++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 3588999998874 2469999999999999999999999999999999999877 458999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
+.. ...++.++|++|++.+++..|++|++.+...-..+. ....+..++.++++++.+++.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 532 223456899999998888999999998652111110 001123345678899999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|.+ |+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999864 899999999975 57788999999985 8999
Q ss_pred EEcCCC
Q 000541 1069 YVGSLG 1074 (1433)
Q Consensus 1069 y~G~~~ 1074 (1433)
+.|+..
T Consensus 224 ~~g~~~ 229 (265)
T PRK10253 224 AQGAPK 229 (265)
T ss_pred EeCCHH
Confidence 999863
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.45 Aligned_cols=217 Identities=19% Similarity=0.272 Sum_probs=178.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478899998873 236999999999999999999999999999999999987532 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|+..+++.+||+||+.+....+. ..+....++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999989999999999988654321 1122334456788899998842 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
...|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 689999999975 4667899999997
Q ss_pred -----cCcEEEEEcCC
Q 000541 1063 -----RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 -----~gG~~~y~G~~ 1073 (1433)
+.|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 25899999885
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.78 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=178.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.++...... ..+++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67889988774210000 0113569999999999999999999999999999999999877 56899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 QE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
.. ..++.++|++|++ .+.+.+||+|++.+..... ........++.++++++.+++. ...+.. ..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1345799999986 4667899999997654321 1122233445678899999995 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|.+ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999975 45668999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=326.88 Aligned_cols=211 Identities=26% Similarity=0.325 Sum_probs=173.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35778887763 2469999999999999999999999999999999999887 56899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000541 916 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE-LNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..++.++|++|+..+++.+|+.|++.+....+. . ...+..+++++.++ +.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~---~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---R---RSRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---c---chHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 31 124568999999999999999999987654321 1 12234567777776 45444544 457999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998874 899999999974 45667899999985 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 98863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.45 Aligned_cols=213 Identities=26% Similarity=0.360 Sum_probs=175.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899999877411 011359999999999999999999999999999999999976 4689999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 915 KQET------F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
.... . ++.++|++|++.+++.+||.||+.+....+ ....+..++.++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 246999999998889999999998765432 1223344566888999999987666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. . .+.+|++++|.+ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-L-AARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H-HHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 3 466999999985 77
Q ss_pred EEE
Q 000541 1067 EIY 1069 (1433)
Q Consensus 1067 ~~y 1069 (1433)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=337.15 Aligned_cols=214 Identities=22% Similarity=0.274 Sum_probs=176.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCC--
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHD-- 239 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 239 (1433)
..+|+|||++|++||+++|+|+||||||||+++|+|.++++...+|+|.++|.++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999998865432 13699999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+.+.+||.+++.+.....+. .... +....+..+|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~~------------------------~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSKA------------------------EAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHH------------------------HHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999876543210 0000 111235567889999764322
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +...+.|||||||||+||+||+.+|+++++||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3556789999999999999999999999999999999999999999999998654 3677888999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.21 Aligned_cols=201 Identities=23% Similarity=0.339 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++....+.. .. +....++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PA------------------------EINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865422110 00 011234568899999877666554
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+. ++++|+.++|+.+++.. +|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 59999999999999999999999999999999999999999999987643 35677778899888776 589999
Q ss_pred ecCCeEEEecCh
Q 000541 402 ISDGQIVYQGPR 413 (1433)
Q Consensus 402 L~~G~iv~~G~~ 413 (1433)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=328.15 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=175.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCC---CCCeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~---~~~~~~G~I~i~G 911 (1433)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899988763 246999999999999999999999999999999999962 2212489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+........ ...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 134567999999988776 5999999876543311 11223345678889999986421111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5799999999975 46688999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=322.65 Aligned_cols=197 Identities=29% Similarity=0.453 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--ccceEEEEcCCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 246 (1433)
+.+|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999999987 999999998875432 2357999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.+..+..+.. +. +....++.+++.+||++..++.++
T Consensus 89 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 129 (211)
T cd03264 89 VREFLDYIAWLKGIP----------SK------------------------EVKARVDEVLELVNLGDRAKKKIG----- 129 (211)
T ss_pred HHHHHHHHHHHhCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHhCchh-----
Confidence 999999865432110 00 011234668889999877776664
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + +++++++|+.+++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999753 3 677779999999999999999999999
Q ss_pred EEEec
Q 000541 407 IVYQG 411 (1433)
Q Consensus 407 iv~~G 411 (1433)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.35 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=169.2
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC--cccceEEEEc-CCCCC
Q 000541 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--VPQRTAAYIS-QHDNH 241 (1433)
Q Consensus 165 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~ 241 (1433)
+++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 345567999999999999999999999999999999999999987 99999999875332 1235799997 55667
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+|++.+.....+.. .. +....++.+++.+||++..|+.++
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 152 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLP----------PA------------------------RFKKRLDELSELLDLEELLDTPVR 152 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCChh
Confidence 78999999998865432210 00 011234567888999988887765
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. ++++|+.++|+.+++.+++|++++
T Consensus 153 -----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 153 -----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999998653 356677789999999999999999
Q ss_pred ecCCeEEEec
Q 000541 402 ISDGQIVYQG 411 (1433)
Q Consensus 402 L~~G~iv~~G 411 (1433)
|++|++++.|
T Consensus 227 l~~G~i~~~g 236 (236)
T cd03267 227 IDKGRLLYDG 236 (236)
T ss_pred EeCCEEEecC
Confidence 9999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=338.79 Aligned_cols=209 Identities=23% Similarity=0.283 Sum_probs=175.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCC--
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHD-- 239 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 239 (1433)
...+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++..... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999987 9999999998865432 35799999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADT 318 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 318 (1433)
.+++.+||+||+.+..+....+ +.+. +....++.+++.+||+ +..++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~------------------------~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQ------------------------EVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHH------------------------HHHHHHHHHHHHcCCChHHhcC
Confidence 5788999999999875432100 0000 1122355688999995 34454
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
. ...|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+
T Consensus 158 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 Y-----PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 4 4569999999999999999999999999999999999999999999998653 356788899999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000541 399 IILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~ 417 (1433)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.98 Aligned_cols=209 Identities=24% Similarity=0.307 Sum_probs=173.7
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5678877653 14579999999999999999999999999999999887 458999999987643
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 -ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 -~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
...++.++|++|++.+++.+|+.||+.+....+. . .....++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999999999999986532211 1 11223456788999999987766653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~ 1072 (1433)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998765 899999999974 45678999999985 89988774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=369.26 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HG 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-Cc
Confidence 46899999999999999999999999999999999999 76 9999999999887654 46899999998665 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++.. +.+.+.+.++....+ .+..+ -.|++..||.||+++.
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQAA 484 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhcccccccccccCCC
Confidence 99999998621 011111111111100 01111 2378889999998765
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++. +++|+|.++|.. +..+.||+|++|++|
T Consensus 485 -~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~---~~~TvIiItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 485 -GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS---RRQTTLMVTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEecCh-HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998863 245555577776 455779999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++.+|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=332.86 Aligned_cols=214 Identities=27% Similarity=0.361 Sum_probs=178.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56889888763 12359999999999999999999999999999999999877 45899999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 Q-----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
. ...++.++|++|++. .+...||.|++.+..... .....+..+.+.++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 334579999998754221 1233444556788999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999964 46678999999986 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9885
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=324.14 Aligned_cols=212 Identities=27% Similarity=0.403 Sum_probs=179.2
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
.++|+++.++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5778887763 2469999999999999999999999999999999999987 458999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..++.++|++|+...++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 124678999999988889999999987654331 122333456788999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999865 899999999974 46778999999985 899988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=334.29 Aligned_cols=218 Identities=24% Similarity=0.329 Sum_probs=176.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67899988774110 001359999999999999999999999999999999999876 46899999998754
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 000541 916 Q-------ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVS 986 (1433)
Q Consensus 916 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~ 986 (1433)
. ..+++.++|++|++. .+...||+||+.+..... ..+.++.++.++++++.+++.+ ..+.. ..
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PF 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 224567899999862 233469999998764332 1223334456788999999963 44443 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 222 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GK 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999974 46677899999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 223 i~~~g~~ 229 (280)
T PRK13649 223 LVLSGKP 229 (280)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.55 Aligned_cols=218 Identities=21% Similarity=0.276 Sum_probs=177.7
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--C-CeeeeEEE
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGSIM 908 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~ 908 (1433)
.+..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999998873 2359999999999999999999999999999999999864 2 13689999
Q ss_pred EcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----ccccc
Q 000541 909 ISGYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQAL 979 (1433)
Q Consensus 909 i~G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~ 979 (1433)
++|.++.. ..+++.++|++|+..+++ .||+||+.+....+. ..+....++.++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 234567999999988777 899999987653221 1223334456788999998743 22322
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhccee
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ 1059 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999986 4789999999975 4667899999
Q ss_pred EEecCcEEEEEcCC
Q 000541 1060 LLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1060 ll~~gG~~~y~G~~ 1073 (1433)
+|.+ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899998875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.21 Aligned_cols=217 Identities=27% Similarity=0.409 Sum_probs=178.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
. ...++.++|++|+..+++..||+||+.+....... ......+..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 22345689999998778889999999875211000 00111233456788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+.+|++++|.+ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999985 56688999999985 8999998
Q ss_pred CCC
Q 000541 1072 SLG 1074 (1433)
Q Consensus 1072 ~~~ 1074 (1433)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 853
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.80 Aligned_cols=198 Identities=25% Similarity=0.376 Sum_probs=166.4
Q ss_pred eccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000541 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 943 (1433)
Q Consensus 864 L~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 943 (1433)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999987 56899999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000541 944 YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023 (1433)
Q Consensus 944 f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~ 1023 (1433)
+......+ .....+.++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2223344456788999999987666653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1024 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1024 ~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999975 46778999999985 899988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=329.80 Aligned_cols=220 Identities=22% Similarity=0.280 Sum_probs=176.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|++|+|||+++|+|+||||||||+++|+|..++ .+.+|+|+++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 689999998873 24699999999999999999999999999999999998753 13689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ..+++.++|++|++..++. ||.||+.+....+. ...+.....+.++++++.+++.+....... ....
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2345678999999887775 99999988754331 111223334567889999998542111111 1145
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.+ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999975 45677899999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.49 Aligned_cols=206 Identities=20% Similarity=0.371 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++..++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 9999999988754332 3569999999988999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.+..+..+. ... .+....++.+++.+||++..+..+
T Consensus 93 ~tv~enl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LSA------------------------EQREDRANELMEEFHIEHLRDSMG---- 135 (241)
T ss_pred CcHHHHHhhhhhcccc---------cCH------------------------HHHHHHHHHHHHHcCCHHHhhcch----
Confidence 9999999876432100 000 001123456888999987665554
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ .+.+++.++|+..++.+++|++++|++
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 -QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998754 356677788999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=331.15 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=179.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999987631 12459999999999999999999999999999999999977 4689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+..++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 567889999998764321 1223334456788999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 5999999999863 3 57999999985 89998
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=290.62 Aligned_cols=212 Identities=27% Similarity=0.385 Sum_probs=176.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++.++++..+.. ..+...||++|++.|++||.+||+|||||||||||-+|+|... +.+|+|.+.|++.
T Consensus 6 ii~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcch
Confidence 3566666665532 2345789999999999999999999999999999999999987 5699999999986
Q ss_pred Ccc------cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 915 KQE------TF-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~------~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
... .+ .+.+|+|+|...+.|++|..||+...+.++... .........+.++.+||.+-.+.. ...
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY-----PAQ 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC-----ccc
Confidence 431 22 367999999999999999999999887776421 222334567889999998755544 247
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
|||||+|||+||||++..|+|||-||||-+||..+...|.+++-.+.++ |.|.|+++|||. +...|||.+-|.. |+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~ 223 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GR 223 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ce
Confidence 9999999999999999999999999999999999999999999988754 999999999985 6788999999985 78
Q ss_pred EE
Q 000541 1067 EI 1068 (1433)
Q Consensus 1067 ~~ 1068 (1433)
++
T Consensus 224 l~ 225 (228)
T COG4181 224 LV 225 (228)
T ss_pred ec
Confidence 75
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=314.11 Aligned_cols=190 Identities=49% Similarity=0.845 Sum_probs=163.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCC--CCCeeeeEEEEcCc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYISGSIMISGY 912 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G~ 912 (1433)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478999998874210 001246999999999999999999999999999999999987 6 56899999999
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000541 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 913 ~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGq 992 (1433)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998889999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986567788999999985 8888764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=359.28 Aligned_cols=123 Identities=24% Similarity=0.322 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CeEE
Q 000541 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1010 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p---~il~ 1010 (1433)
.+||.|++.|.+.++ . .....+.++.++|... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999998865432 1 1123568888999753 3443 3579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCC
Q 000541 1011 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK-----RGGQEIYVGSL 1073 (1433)
Q Consensus 1011 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~-----~gG~~~y~G~~ 1073 (1433)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999874 457899999994 57999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=332.36 Aligned_cols=207 Identities=26% Similarity=0.363 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCC--C---cccceEEEEcCCCC-CC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE--F---VPQRTAAYISQHDN-HI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 242 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 45999999999999999999999999999999999999987 9999999998741 1 12357999999863 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
...||+||+.++....+. ... +....++.+++.+||.+..++.++
T Consensus 96 ~~~tv~e~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~- 140 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKL----------PED------------------------EVRKRVDNALKRTGIEHLKDKPTH- 140 (283)
T ss_pred ccccHHHHHHhHHHHcCC----------CHH------------------------HHHHHHHHHHHHCCChhhhhCCcc-
Confidence 568999999986542211 000 011235678899999877766554
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.++||++++|
T Consensus 141 ----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 141 ----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 3567777899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000541 403 SDGQIVYQGPREHVLE 418 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~~ 418 (1433)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.17 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=175.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC-CeeeeEEEEcCccC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGSIMISGYPK 914 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 914 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788888773 24699999999999999999999999999999999998642 24689999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
.. ..+++.++|++|++.+++ .||+||+.+....+. ........++.++++++.+++.+....... .....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999988876 699999988654331 100112334457789999998532111111 124579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|.+ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999975 46678999999985 8999998
Q ss_pred CC
Q 000541 1072 SL 1073 (1433)
Q Consensus 1072 ~~ 1073 (1433)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 75
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=368.90 Aligned_cols=134 Identities=25% Similarity=0.314 Sum_probs=107.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000541 932 HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1007 (1433)
Q Consensus 932 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~~~LSgGqrkRl~ia~~L~---~~p~ 1007 (1433)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44568999999876542211112223344455 47888999775 4544 3579999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCC
Q 000541 1008 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK-----RGGQEIYVGSL 1073 (1433)
Q Consensus 1008 il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~-----~gG~~~y~G~~ 1073 (1433)
+++|||||+|||+.+...+++.|+++++.|.|||+++|++. ....+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999975 448899999995 36899999986
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=324.67 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=177.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--CC-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899998773 2359999999999999999999999999999999999864 21 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~ 985 (1433)
.++.. ..+++.++|++|+..+++..|++||+.+....+. .....+.++.++++++.+++... .+.... ..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~ 146 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS--NA 146 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC--Cc
Confidence 87632 2346679999999989999999999987543221 11222334567888999998542 121111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-G 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999975 689999999975 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 224 ~i~~~~~~ 231 (252)
T PRK14256 224 DLVECGET 231 (252)
T ss_pred EEEEeCCH
Confidence 99999985
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=328.49 Aligned_cols=205 Identities=26% Similarity=0.377 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 244 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 45899999999999999999999999999999999999987 999999999875432 2457999999963 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++....+. .. .+....++.+++.+||++..++.++
T Consensus 99 ~tv~enl~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 141 (271)
T PRK13632 99 ATVEDDIAFGLENKKV----------PP------------------------KKMKDIIDDLAKKVGMEDYLDKEPQ--- 141 (271)
T ss_pred ccHHHHHHhHHHHcCC----------CH------------------------HHHHHHHHHHHHHcCCHHHhhCCcc---
Confidence 9999999986532110 00 0011235668899999877776654
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. ++++|++++|+.+++. .+|++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 142 --NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 3466777888887775 7999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=327.38 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 46999999999999999999999999999999999999987 99999999887542 34589999998888999999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||+.++.+..+. ... +....++.+++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~L 129 (255)
T PRK11248 89 DNVAFGLQLAGV----------EKM------------------------QRLEIAHQMLKKVGLEGAEKRYIW-----QL 129 (255)
T ss_pred HHHHhHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCChhHhhCChh-----hC
Confidence 999886432211 000 011234668899999876666554 59
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS--DGQ 406 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 406 (1433)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++||.++|+..++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999997543 35667779999999999999999998 599
Q ss_pred EEEecChh
Q 000541 407 IVYQGPRE 414 (1433)
Q Consensus 407 iv~~G~~~ 414 (1433)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=330.23 Aligned_cols=219 Identities=25% Similarity=0.351 Sum_probs=177.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC------eeeeEEEE
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YISGSIMI 909 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~------~~~G~I~i 909 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887763 246999999999999999999999999999999999987632 12899999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 910 SGYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 910 ~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
+|.+... ..+++.++|++|++..++.+||+||+.+....+.. ......+..+.++++++.+++.+..++. .
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111123345678899999998766554 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHh
Q 000541 986 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAF 1055 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~---------~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~f 1055 (1433)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999999876 899999999975 466789
Q ss_pred cceeEEecCcEEEEEcCCC
Q 000541 1056 DELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1056 d~~~ll~~gG~~~y~G~~~ 1074 (1433)
|++++|.+ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 8999999863
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=330.33 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=179.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999987741 11358999999999999999999999999999999999977 4689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.++|++|++. +++..|+.+++.+..... ....+...+.++++++.+++.+..+.. ...|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677889999998864322 122333445678899999998776654 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++. .+|++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 344 4999999985 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=327.94 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=180.2
Q ss_pred cCCceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeE
Q 000541 830 PFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGS 906 (1433)
Q Consensus 830 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~ 906 (1433)
|..+..+.++|+++.++ .+.+|+|+|+++++||++||+|+|||||||||++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445689999998773 24699999999999999999999999999999999998753 146899
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccccccc
Q 000541 907 IMISGYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981 (1433)
Q Consensus 907 I~i~G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg 981 (1433)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... + .......++.++++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567999999988777 59999998864321 1 11223344567888999988532212222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEE
Q 000541 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 982 ~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll 1061 (1433)
. ....||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|+++ ++.+.+|++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 246899999999999999999999999999999999999999999999985 4799999999975 567889999999
Q ss_pred ecCcEEEEEcCC
Q 000541 1062 KRGGQEIYVGSL 1073 (1433)
Q Consensus 1062 ~~gG~~~y~G~~ 1073 (1433)
.+ |+++..|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 899999985
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=342.33 Aligned_cols=195 Identities=24% Similarity=0.391 Sum_probs=170.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------cccceEEEEcCCCCCCCCCC
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 246 (1433)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.|+.+.. ....++.+++.+||++..+..++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG----- 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----
Confidence 999999863200 00124568899999887776654
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++.+++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998653 35677779999999999999999999999
Q ss_pred EEEecChhHHH
Q 000541 407 IVYQGPREHVL 417 (1433)
Q Consensus 407 iv~~G~~~~~~ 417 (1433)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999885
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=323.81 Aligned_cols=212 Identities=27% Similarity=0.390 Sum_probs=178.9
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5678877763 2369999999999999999999999999999999999876 468999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234679999999988899999999987654321 122333456788999999987766653 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998776 899999999974 46778999999985 899999885
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=335.52 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=180.1
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC-C-eeeeEEEEcCc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YISGSIMISGY 912 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~-~-~~~G~I~i~G~ 912 (1433)
.++++|+++.++.+ .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889998887421 1124699999999999999999999999999999999998752 1 46899999998
Q ss_pred cCCcc---cc----cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 000541 913 PKKQE---TF----ARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983 (1433)
Q Consensus 913 ~~~~~---~~----~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~ 983 (1433)
++... .. ++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+..+.+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~-- 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV-- 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--
Confidence 76431 11 23699999997 47889999998866543321 12344556778899999999753222211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
....|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|||++||+.+ .+.+.+|++++|.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2357999999999999999999999999999999999999999999999986 4899999999975 4567899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 229 ~-G~ive~g~~ 238 (326)
T PRK11022 229 A-GQVVETGKA 238 (326)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.83 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 3469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhC-CCccccccccCc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG-LDVCADTMVGDE 323 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~ 323 (1433)
+||+||+.++.+..+.. . ....+.+++.++ +++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~--- 129 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRG--- 129 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCCh---
Confidence 99999998865422100 0 001234555665 454445444
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
+.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+. ++++++.++|+.+++.+++|+|++|+
T Consensus 130 --~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 130 --GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999997653 35677778999999999999999999
Q ss_pred CCeEEEecChhHH
Q 000541 404 DGQIVYQGPREHV 416 (1433)
Q Consensus 404 ~G~iv~~G~~~~~ 416 (1433)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=360.38 Aligned_cols=221 Identities=20% Similarity=0.290 Sum_probs=184.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
-++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899998773 2469999999999999999999999999999999999876434689999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQET----FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.... .++.+||++|++.+++.+||+|++.+....+.....+.....+.++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24569999999988999999999988654321111122334456889999999987777654 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+.+.+|++++|.+ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999974 45677899999985 899999
Q ss_pred cCCCc
Q 000541 1071 GSLGR 1075 (1433)
Q Consensus 1071 G~~~~ 1075 (1433)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 98754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=325.47 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=167.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765432 3569999999988999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHh-CCCccccccccCc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDE 323 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 323 (1433)
+||+||+.++..... . .+ ....++.+++.+ ++.+..++.+
T Consensus 95 ~tv~~~l~~~~~~~~---~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 135 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R----DQ-----------------------------FQERIKWVYELFPRLHERRIQRA--- 135 (237)
T ss_pred CcHHHHHHHhhhccC---h----hH-----------------------------HHHHHHHHHHHHHHHHHHHhCch---
Confidence 999999988642110 0 00 001123345555 3555444443
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++||.++|+.+++.+++|++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 136 --GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999999764 2 5667778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998774
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=336.24 Aligned_cols=224 Identities=19% Similarity=0.285 Sum_probs=181.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-eeeeEEEEcCcc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGSIMISGYP 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 913 (1433)
.++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48899998877421 12356999999999999999999999999999999999987642 238999999987
Q ss_pred CCc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCC
Q 000541 914 KKQ---ET---FA-RISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG 984 (1433)
Q Consensus 914 ~~~---~~---~~-~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~ 984 (1433)
+.. .. ++ +.++|++|++ .+.|.+|+.+++.+...... ..+..+..+++.++++.++|.+..+.... .
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~--~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKM--Y 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcC--C
Confidence 643 11 22 4699999997 67899999999977654332 12344455678889999998754332222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++||+||+.+|++|++||||+|||..++..|++.|+++.++ |.|||+++||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999865 899999999975 45567999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=332.63 Aligned_cols=219 Identities=20% Similarity=0.277 Sum_probs=180.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
-+.++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 378999998874210 0012469999999999999999999999999999999999987 5689999999876
Q ss_pred Cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 915 KQ----ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 915 ~~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+.++.++++++.++|.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234567999999974 233569999998875432 2233444567889999999988777664 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|.+ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999763 4 45999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=330.23 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc----ccceEEEEcCCCC-CCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 243 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999875422 2467999999963 344
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
..||.|++.|+....+.. .. +....++.+++.+||++..++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE------------------------EIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 579999999875432210 00 011235678999999887777765
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 59999999999999999999999999999999999999999999998653 35667778898888865 99999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.75 Aligned_cols=209 Identities=27% Similarity=0.369 Sum_probs=174.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 377899988763 2359999999999999999999999999999999999876 4689999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.++|++|++.+++ .||+||+.+....+ . .....++++++.+++. +..++. ...|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999987776 69999997653221 1 1134567889999996 455543 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999975 46678999999985 89998
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=320.41 Aligned_cols=195 Identities=26% Similarity=0.395 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 999999999875432 235699999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++....+. . .. +....++.+++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~-~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGV-P---------PR------------------------EIRKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCC-C---------HH------------------------HHHHHHHHHHHHcCCHHHhhCChh-
Confidence 999999999987543211 0 00 011234568889999877776654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . ++++++++|+.+++.+++|++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999754 2 567777899999999999999999
Q ss_pred cCCeE
Q 000541 403 SDGQI 407 (1433)
Q Consensus 403 ~~G~i 407 (1433)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=320.09 Aligned_cols=194 Identities=29% Similarity=0.419 Sum_probs=163.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999887 999999999876432 235799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++....+.. . ......++.+++.+||++..++.+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 136 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------E------------------------REIQRRVGAALRQVGLEHKADAFPE- 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 9999999999875432110 0 0011234668899999876666554
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||++++|
T Consensus 137 ----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 137 ----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 5999999999999999999999999999999999999999999999754 3 567777899999999999999999
Q ss_pred cCCe
Q 000541 403 SDGQ 406 (1433)
Q Consensus 403 ~~G~ 406 (1433)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=345.45 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=179.0
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcC
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 911 (1433)
.+..++.+|+++.++. .+++++|+|++++||+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 3456777799998852 2379999999999999999999999999999999999987 4699999999
Q ss_pred ccCC---cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccc------cccccC
Q 000541 912 YPKK---QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR------QALVGL 982 (1433)
Q Consensus 912 ~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~------~~~vg~ 982 (1433)
.+.. ...+++.++||+|++.+++ -|++||+.++. | +.+ ++.+.++++..++.+.- |+.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 4568899999999997776 49999998752 1 112 34466777777776654 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
+.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||+++|++ .....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 3578999999999999999999999999999999999999999999999986 49999999986 4567899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 899998875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.47 Aligned_cols=211 Identities=22% Similarity=0.289 Sum_probs=175.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 568899887741 1 238999999999999999999999999999999877 56899999998754
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 916 QE-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 916 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12457899999999999999999998753211 111 1233456888999999987777664 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999975 46677899999985 899999885
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=329.46 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc----ccceEEEEcCCCC-CCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 243 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999987 999999999875432 1356999999964 467
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 323 (1433)
..||+||+.|+....+. .+. +....++.+++.+||++..++.++
T Consensus 92 ~~tv~enl~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-- 135 (274)
T PRK13644 92 GRTVEEDLAFGPENLCL----------PPI------------------------EIRKRVDRALAEIGLEKYRHRSPK-- 135 (274)
T ss_pred cchHHHHHHhhHHHcCC----------CHH------------------------HHHHHHHHHHHHCCCHHHhcCCcc--
Confidence 78999999986543211 000 011235668899999887776664
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 403 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|++++|+..++ ..+|+|++|+
T Consensus 136 ---~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 136 ---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999854 356777789998888 5699999999
Q ss_pred CCeEEEecChhHHH
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=335.21 Aligned_cols=225 Identities=23% Similarity=0.269 Sum_probs=182.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999998875321100 00123569999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000541 915 KQE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGV 985 (1433)
Q Consensus 915 ~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~ 985 (1433)
... .+++.++|++|++ .+.|.+||.+++....... ......+.++.+.++++.++|.+ ..+.. .
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 5789999999997654332 12334455667899999999963 44443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
..||||||||++||+||+.+|++|++||||+|||..++..|+++|+++.++ |.|||++||+.+ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999964 35567899999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 899999985
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=318.38 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=180.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCcceEEEECCccCCCCcc-------cceEEEEcCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-S-SLRVSGRVTYNGHDMDEFVP-------QRTAAYISQH 238 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 238 (1433)
..++++|||+++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++..+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 33467999999998755442 2479999999
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccc
Q 000541 239 D--NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCA 316 (1433)
Q Consensus 239 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 316 (1433)
+ .+-|.+||.+.+.-..+...... . ..++...+..+|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~------------------------~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------S------------------------KKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------h------------------------hHHHHHHHHHHHHHcCCCCHH
Confidence 4 67899999999877655321100 0 112233456789999998643
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
. +-+.+...|||||||||.||.||+.+|+++|.|||||+||..++.+|++.|+++.+ ..+++++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33567788999999999999999999999999999999999999999999999987 45788889999999999999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 000541 397 DDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~~~~~ 417 (1433)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=317.83 Aligned_cols=189 Identities=25% Similarity=0.386 Sum_probs=161.1
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC---c----ccccceEEEeccCCCCC
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK---Q----ETFARISGYCEQNDIHS 933 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~----~~~~~~~gyv~Q~d~~~ 933 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999887 56899999998742 1 12356799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000541 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1013 (1433)
Q Consensus 934 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDE 1013 (1433)
+..|++||+.+....+ ........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 1223344556788999999987766653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEE
Q 000541 1014 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 1014 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll 1061 (1433)
||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999975 45678988765
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=314.47 Aligned_cols=180 Identities=44% Similarity=0.777 Sum_probs=154.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcceEEEECCccCCCCc--ccceEEEEcCCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD---SSLRVSGRVTYNGHDMDEFV--PQRTAAYISQHDNH 241 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 241 (1433)
.++.+|+|+|+++++||+++|+|||||||||||++|+|.++ ++ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34579999999999999999999999999999999999998 55 999999999876432 24579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++++.. .
T Consensus 95 ~~~~tv~~~l~~~~~~~---------------------------------------------------------~----- 112 (202)
T cd03233 95 FPTLTVRETLDFALRCK---------------------------------------------------------G----- 112 (202)
T ss_pred CCCCcHHHHHhhhhhhc---------------------------------------------------------c-----
Confidence 99999999998753210 1
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
++.+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.++++++||+.+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 12234699999999999999999999999999999999999999999999986543456677777888899999999999
Q ss_pred ecCCeEEEec
Q 000541 402 ISDGQIVYQG 411 (1433)
Q Consensus 402 L~~G~iv~~G 411 (1433)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=325.48 Aligned_cols=207 Identities=25% Similarity=0.406 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45899999999999999999999999999999999999763 12389999999987542 123579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
++ +||+||+.++.+..+... .. +....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKD---------KK------------------------ELDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCCcchhhHhh
Confidence 88 999999998754321100 00 0112345678899997 5555
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|
T Consensus 140 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 140 DSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISD 211 (247)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCC
Confidence 444 46999999999999999999999999999999999999999999999754 3 677779999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
++++|++|+++++|+++++.
T Consensus 212 ~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=332.17 Aligned_cols=205 Identities=23% Similarity=0.336 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------cccceEEEEcCCCC-
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------VPQRTAAYISQHDN- 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 240 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999997 99999999887532 11346999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 319 (1433)
.+..+||+||+.|+....+. ... +....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGF----------SED------------------------EAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 44468999999986542211 000 0112356688999996 455665
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|
T Consensus 143 ~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999753 3677778999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=333.11 Aligned_cols=219 Identities=19% Similarity=0.310 Sum_probs=176.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++... .....+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 588999998874110 001349999999999999999999999999999999999887 4689999999875
Q ss_pred Cc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000541 915 KQ--------ETFARISGYCEQNDIH-SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPG 984 (1433)
Q Consensus 915 ~~--------~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~ 984 (1433)
.. ..+++.++|++|++.. ....||+||+.|..... ....+...+.++++++.+++. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345679999998632 23469999998864321 122333345678889999984 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|.+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999975 56778999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=326.91 Aligned_cols=195 Identities=22% Similarity=0.303 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 35899999999999999999999999999999999999987 9999999976543 245799999999888889999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||+.++... . ....++.+++.+||++..+..++ .|
T Consensus 100 enl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~L 134 (257)
T PRK11247 100 DNVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANEWPA-----AL 134 (257)
T ss_pred HHHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcCChh-----hC
Confidence 999874210 0 00123457888999876665554 69
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 408 (1433)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|++++|+..++.+++|+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3566777999999999999999999999999
Q ss_pred EecChh
Q 000541 409 YQGPRE 414 (1433)
Q Consensus 409 ~~G~~~ 414 (1433)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=338.96 Aligned_cols=212 Identities=28% Similarity=0.438 Sum_probs=176.1
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcC
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 911 (1433)
.+..++|+||++++. +++++|+|+||+|++||.+||+|+|||||||++++|.+... .+|+|+|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999885 23469999999999999999999999999999999998775 489999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-------cccccccc
Q 000541 912 YPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-------PLRQALVG 981 (1433)
Q Consensus 912 ~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~vg 981 (1433)
+++++ +.+|+.+||||||..++ +-||.+|+.|+. .+.+.+ .|-++.+..++. +-.++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 56788999999987766 459999999863 222322 234444444443 33456677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEE
Q 000541 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 982 ~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll 1061 (1433)
..| ..|||||||||+|||+++.+|+|+++|||||.||+.|...+++.+++. ..|+|+|++.|+ .+....||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~--l~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHR--LDLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEec--chhHhcCCEEEEE
Confidence 664 469999999999999999999999999999999999999999999994 468999999997 4678999999999
Q ss_pred ecCcEEEEEcCC
Q 000541 1062 KRGGQEIYVGSL 1073 (1433)
Q Consensus 1062 ~~gG~~~y~G~~ 1073 (1433)
++ |++...|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 96 899999985
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=323.68 Aligned_cols=212 Identities=21% Similarity=0.351 Sum_probs=173.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999887 9999999988754332 2469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++...... ....+ ... . ..+....++.+++.+|+++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~~-----~~~~~---------~~~-~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDKS-----VFASL---------FFR-L-----------SAEEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhcccc-----ccccc---------ccc-c-----------HHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 9999999986431100 00000 000 0 00112235678899999877776665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+.+++.++||+|++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999753 35777789999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=323.08 Aligned_cols=201 Identities=29% Similarity=0.417 Sum_probs=168.4
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc--ccccceEEEec-cCCCCCCC
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ--ETFARISGYCE-QNDIHSPN 935 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~-Q~d~~~~~ 935 (1433)
+.+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34579999999999999999999999999999999999876 468999999986432 23456789997 55667789
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000541 936 VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1015 (1433)
Q Consensus 936 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPT 1015 (1433)
+||+|++.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865433 1223334456788999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 1016 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 1016 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999999765 899999999975 46677899999985 7888754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=333.35 Aligned_cols=214 Identities=20% Similarity=0.248 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCccCCCCcc-------cceEEEEcCCC-
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYNGHDMDEFVP-------QRTAAYISQHD- 239 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 239 (1433)
.++|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987422 138999999998765432 13699999997
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 240 -NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 240 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
.+.|.+||.+++....+.... ..+ .+....++.+|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~~~------------------------~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------GNK------------------------KTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------CCH------------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 478999999998765432100 000 011234567899999975211
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
+-+...+.|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+. .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112345579999999999999999999999999999999999999999999998654 356788899999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000541 399 IILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~ 418 (1433)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=339.93 Aligned_cols=203 Identities=21% Similarity=0.308 Sum_probs=174.8
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc----CCc---cc---c-cceEEEec
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP----KKQ---ET---F-ARISGYCE 927 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~----~~~---~~---~-~~~~gyv~ 927 (1433)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. .. + ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 44679999999999999999999999999999999999987 568999999962 211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000541 928 QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPS 1007 (1433)
Q Consensus 928 Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~ 1007 (1433)
|+..++|.+||+||+.|....+ ..+..++++.++++++.++|.+..+... ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2334555667889999999988777654 4799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1008 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1008 il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
||+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999865 899999999975 56788999999985 899999986
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=330.78 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=179.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCe-eeeEEEEcCcc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGSIMISGYP 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 913 (1433)
.++++|+++.++. ..+.+|+|+|+++++||++||+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4789999987731 12359999999999999999999999999999999999876321 13999999988
Q ss_pred CCcc---cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 914 KKQE---TFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 914 ~~~~---~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.... ..++.+||++|++. .++..||+||+.|....+ ..+.++.++.++++++.+++.+..+.. .+.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 6432 34567999999974 567899999998764322 233444556788899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + +.+|++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 8999999999753 3 67999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99985
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=326.53 Aligned_cols=206 Identities=33% Similarity=0.503 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999987754322 35689999998887889
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++....+. ... +....++.+++.+||++..++.++
T Consensus 92 tv~e~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGL----------SRA------------------------EDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCC----------CcH------------------------HHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 999999886421110 000 011234568889999876676665
Q ss_pred CCCchhHhhHHHHHHHHh------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 326 RGISGGQKKRVTTGEMMV------GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~------~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
.|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+++.+++|+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 59999999999999999 5999999999999999999999999999986333 567777899999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=293.91 Aligned_cols=200 Identities=27% Similarity=0.380 Sum_probs=176.6
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYE 940 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 940 (1433)
..+|+|||+.|.+||.+.++||||||||||||+++|..+ +..|+|.+||.++....- .-|.|+|++.++|-+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 359999999999999999999999999999999999988 568999999998764332 2489999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 000541 941 SLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020 (1433)
Q Consensus 941 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~ 1020 (1433)
|+.|+.++| .+++.++.+.+.+.+..+||.+..++.+ -.||||||||+.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4667888889999999999999887654 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhcceeEEecC-cEEEEEcCC
Q 000541 1021 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRG-GQEIYVGSL 1073 (1433)
Q Consensus 1021 ~~~~~i~~~l~~~~-~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g-G~~~y~G~~ 1073 (1433)
-+++.++++|-++. ++|+.++++||+.. +..-+++++++|+.| |+++..=++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 99999999998876 45999999999864 344567999999865 788877665
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=339.89 Aligned_cols=200 Identities=24% Similarity=0.432 Sum_probs=171.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-------cccceEEEEcCCCCCCCCCC
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 246 (1433)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999987 99999999887432 12457999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+||+.|+.+... .. +....++.+++.+||++..++.+.
T Consensus 92 v~enl~~~~~~~~------------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~----- 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------PS------------------------ERRISFERVIELLGIGHLLGRLPG----- 130 (354)
T ss_pred HHHHHHHHhhccC------------hh------------------------HHHHHHHHHHHHcCChhHhcCChh-----
Confidence 9999998753210 00 011234668899999887776654
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 599999999999999999999999999999999999999999999986533 5667779999999999999999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
++..|+++++..
T Consensus 210 i~~~g~~~~~~~ 221 (354)
T TIGR02142 210 VAAAGPIAEVWA 221 (354)
T ss_pred EEEECCHHHHhc
Confidence 999999988753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=327.71 Aligned_cols=215 Identities=22% Similarity=0.268 Sum_probs=175.1
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~ 910 (1433)
..+.++|+++.++ .+.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998773 24699999999999999999999999999999999998652 1368999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----ccccccc
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVG 981 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg 981 (1433)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. .. ...++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234567999999988887 499999988764331 11 122345677888887742 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEE
Q 000541 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 982 ~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll 1061 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999975 577889999999
Q ss_pred ec----------CcEEEEEcCC
Q 000541 1062 KR----------GGQEIYVGSL 1073 (1433)
Q Consensus 1062 ~~----------gG~~~y~G~~ 1073 (1433)
.+ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 3678999886
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=326.16 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 458999999999999999999999999999999999987410 1389999999886432 123569999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
++ +||+||+.|+.+..+.. .. +....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KK------------------------DLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999875432110 00 0011245678888874 3334
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|++++|+.+++.+++|
T Consensus 150 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 SPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCC
Confidence 443 46999999999999999999999999999999999999999999998742 4677779999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=321.49 Aligned_cols=211 Identities=27% Similarity=0.378 Sum_probs=177.2
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.+. . ++|+|+|++++|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 4677776652 1 27999999999999999999999999999999999877 568999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 917 E-TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 917 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHH
Confidence 1 22467999999998999999999998764332 1223334456778999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
++||++|+++|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 999999999974 46678999999985 899998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=319.13 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++..++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 56999999999999999999999999999999999999887 999999998765422 35799999999889999999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||+.+.....+. . ...++.+++.+||++..|..++ .|
T Consensus 89 ~~~~~~~~~~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL----------P----------------------------DSRIDEVLNIVDLTNTGKKKAK-----QF 125 (223)
T ss_pred HHHHHHHHHcCC----------C----------------------------HHHHHHHHHHcCCcHHHhhhHh-----hC
Confidence 999876532210 0 0123457888999877666554 59
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEE
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 408 (1433)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+..++.+.+|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999854 3556777889999999999999999999999
Q ss_pred EecChhH
Q 000541 409 YQGPREH 415 (1433)
Q Consensus 409 ~~G~~~~ 415 (1433)
+.|++.+
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03740 204 YQGKINK 210 (223)
T ss_pred EecChhh
Confidence 9998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=329.20 Aligned_cols=206 Identities=25% Similarity=0.357 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 244 (1433)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 35999999999999999999999999999999999999987 9999999988754322 356899999963 3456
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||+||+.++....+. .. .+....++.+++.+||.+..++.++
T Consensus 94 ~tv~~~l~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (277)
T PRK13652 94 PTVEQDIAFGPINLGL----------DE------------------------ETVAHRVSSALHMLGLEELRDRVPH--- 136 (277)
T ss_pred ccHHHHHHhHHHHcCC----------CH------------------------HHHHHHHHHHHHHCCChhHhcCCcc---
Confidence 8999999886543211 00 0111235678999999877776664
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+. .+++|+.++|+.+++.+.||+|++|++
T Consensus 137 --~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 137 --HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 356777799999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=327.52 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCC--C---cccceEEEEcCCCC-CC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE--F---VPQRTAAYISQHDN-HI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 242 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 45999999999999999999999999999999999999987 9999999998742 1 11356999999864 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
...|+.||+.++....+.. .. +....++.+++.+||++..++.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EA------------------------EITRRVDEALTLVDAQHFRHQPIQ- 135 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhcCCch-
Confidence 5678999998864322110 00 011234568889999877776654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|++++|
T Consensus 136 ----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 136 ----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999864 3 566777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=327.53 Aligned_cols=223 Identities=19% Similarity=0.268 Sum_probs=178.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++++..+... ...+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 7899999887421100 00012469999999999999999999999999999999999987 56899999998764
Q ss_pred cc---cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000541 916 QE---TFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~---~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LS 989 (1433)
.. ..++.++|++|++. +.+.+||.|++.+....+. ........+.++++++.+++. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 21 22356899999874 5678899999988654432 122333445678899999994 445543 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~ 1068 (1433)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 56667999999985 8999
Q ss_pred EEcCC
Q 000541 1069 YVGSL 1073 (1433)
Q Consensus 1069 y~G~~ 1073 (1433)
..|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=324.86 Aligned_cols=206 Identities=23% Similarity=0.354 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc----------------ccceE
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV----------------PQRTA 232 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 232 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999987 999999998775321 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHh-cCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 000541 233 AYISQHDNHIGEMTVRETLAFSARC-QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG 311 (1433)
Q Consensus 233 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 311 (1433)
+|++|++.+++.+||+||+.++... .+. .. .+....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGM----------AR------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcC
Confidence 9999999889999999999886321 100 00 001123456788999
Q ss_pred CCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 000541 312 LDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE 391 (1433)
Q Consensus 312 L~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 391 (1433)
+++..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.++
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 987666554 469999999999999999999999999999999999999999999998653 35677779999999
Q ss_pred HHhhcCeEEEecCCeEEEecChhHHH
Q 000541 392 TYDLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 392 ~~~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=325.68 Aligned_cols=221 Identities=23% Similarity=0.314 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998764322 2348999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++...... .+....... . +..+ ....+....++.+++.+||++..+..++
T Consensus 95 ~tv~enl~~~~~~~~~---~~~~~~~~~--------~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 95 MTVIENLLVAQHQQLK---TGLFSGLLK--------T-PAFR-------RAESEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred CcHHHHHHHhhhcccc---chhhhhhcc--------c-cccc-------cchhHHHHHHHHHHHhCChhhhhhCChh---
Confidence 9999999986431100 000000000 0 0000 0000112235667889999876666654
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++||.++|+.+++.+++|++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 356777799999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=319.14 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999998875432 135799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.+.....+.. . .+....++.+++.+||++..++.++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 136 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGAS----------G------------------------DDIRRRVSAALDKVGLLDKAKNFPI- 136 (222)
T ss_pred ccccHHHHHHhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCch-
Confidence 9999999999865432110 0 0011124567888999876665554
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .++++++++|+.+++..++|+|++|
T Consensus 137 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 137 ----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999754 2567777999999999999999999
Q ss_pred cCCeEE
Q 000541 403 SDGQIV 408 (1433)
Q Consensus 403 ~~G~iv 408 (1433)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999975
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=317.07 Aligned_cols=191 Identities=24% Similarity=0.386 Sum_probs=162.4
Q ss_pred cceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 866 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999976 468999999987531 1235679999999988899999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
+||+.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 1019 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999875 899999999974 45678999999985 7888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=319.99 Aligned_cols=201 Identities=27% Similarity=0.363 Sum_probs=164.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc------ccceEEEEcCCC--CC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV------PQRTAAYISQHD--NH 241 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 241 (1433)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999876533 235799999997 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMV 320 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 320 (1433)
++.+||+||+.+.....+... ..+ ......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~---------~~~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS---------KKE-----------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc---------HHH-----------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988654321100 000 0011124577888985 4555554
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
+ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++||.++|+.+++.+++|+++
T Consensus 144 ~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEE
Confidence 4 59999999999999999999999999999999999999999999998653 24667778999999999999999
Q ss_pred EecCCeEEEec
Q 000541 401 LISDGQIVYQG 411 (1433)
Q Consensus 401 lL~~G~iv~~G 411 (1433)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=333.31 Aligned_cols=208 Identities=20% Similarity=0.269 Sum_probs=175.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCC--C
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHD--N 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 240 (1433)
+.+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999886 9999999998765431 35799999997 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc-ccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-CADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~ 319 (1433)
+.+.+||.+++.+..+.... ..+. +....+..+++.+||+. ..++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAA------------------------ERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHCCCChHHhcCC
Confidence 78999999999876543210 0000 11224567899999963 45554
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 152 p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 P-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred C-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4 569999999999999999999999999999999999999999999998653 3567888999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=324.00 Aligned_cols=219 Identities=19% Similarity=0.265 Sum_probs=173.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--C-eeeeEEEEcCc
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGSIMISGY 912 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G~ 912 (1433)
-+++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35778887663 24699999999999999999999999999999999998642 1 35899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 913 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 913 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
++.. ...++.++|++|++.+++. ||+||+.+....+ .........++.++++++.+++.+........ ....
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888775 9999998764332 11112223345677889999986521111111 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999975 56678999999986 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=334.36 Aligned_cols=226 Identities=16% Similarity=0.187 Sum_probs=178.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--CeeeeEEEEcCc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYISGSIMISGY 912 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~ 912 (1433)
-+.++|+++.++.. .+...+|+|||++|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889998877422 1235699999999999999999999999999999999998752 246899999998
Q ss_pred cCCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCC---CChhHHHHHHHHHHHHcCCcccccccc
Q 000541 913 PKKQE---T----FARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLE---VDSPTRKMFIEEVMELVELNPLRQALV 980 (1433)
Q Consensus 913 ~~~~~---~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~---~~~~~~~~~v~~vl~~l~l~~~~~~~v 980 (1433)
++... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+..+...
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76421 1 1246999999975 5788999999976422110000 011234456789999999975432211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhccee
Q 000541 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 981 g~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ 1059 (1433)
. ....|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||+++|+++ .+.+.+|+++
T Consensus 154 ~--~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 154 S--FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred C--CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 1 13579999999999999999999999999999999999999999999999875 999999999964 4567899999
Q ss_pred EEecCcEEEEEcCC
Q 000541 1060 LLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1060 ll~~gG~~~y~G~~ 1073 (1433)
+|.+ |+++..|+.
T Consensus 231 vm~~-G~ive~g~~ 243 (330)
T PRK15093 231 VLYC-GQTVETAPS 243 (330)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999985
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=338.91 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=166.8
Q ss_pred cceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 866 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999987 468999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
+||+.|... ...++.++++++.+++.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345788999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1019 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|+.++..+++.|+++.++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999865 899999999974 57788999999985 899999986
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=323.39 Aligned_cols=219 Identities=26% Similarity=0.322 Sum_probs=174.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--CC-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 911 (1433)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998773 2359999999999999999999999999999999999742 21 2489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.+... ..+++.++|++|+..+++ .||+||+.+....+ +. ......++.++++++.+++.+....... ....
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-GI-KDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-CC-CcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 134567999999988777 89999998764332 11 1122334557788888887431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999975 56778999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 225 i~~~g~~ 231 (252)
T PRK14239 225 LIEYNDT 231 (252)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=317.09 Aligned_cols=194 Identities=29% Similarity=0.449 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 244 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 56999999999999999999999999999999999999887 999999998875432 2357999999964 4678
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
+||+||+.++....+. ... +....++.+++.+||++..++.++
T Consensus 91 ~t~~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 133 (211)
T cd03225 91 PTVEEEVAFGLENLGL----------PEE------------------------EIEERVEEALELVGLEGLRDRSPF--- 133 (211)
T ss_pred CcHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCcHhhhcCCcc---
Confidence 9999999886432110 000 011234567889999876666554
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 134 --~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 134 --TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998652 56777799999999999999999999
Q ss_pred Ce
Q 000541 405 GQ 406 (1433)
Q Consensus 405 G~ 406 (1433)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=324.64 Aligned_cols=219 Identities=19% Similarity=0.257 Sum_probs=175.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--C-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 911 (1433)
-+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999998763 23599999999999999999999999999999999998652 1 1489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .....+..+.++++++.+++.+....... ....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2345679999999888875 99999987643321 11223334557788888888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999975 56778999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9999885
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=339.25 Aligned_cols=194 Identities=25% Similarity=0.376 Sum_probs=168.5
Q ss_pred cceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-------ETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 866 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999987 468999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
+||+.|..... ...+.++.++++++.+++.+..++.+ ..|||||||||+||+||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334456889999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1019 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999875 899999999975 56778999999985 899999885
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=318.21 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=162.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998755332 1469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++...... ... +....++.+++.+||++..+..++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKK----------SVK------------------------EAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhhCChh
Confidence 8899999999986432110 000 011224568889999876666554
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++. .+|+|++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEE
Confidence 699999999999999999999999999999999999999999999986533 456777888888775 4799999
Q ss_pred ecCCeEE
Q 000541 402 ISDGQIV 408 (1433)
Q Consensus 402 L~~G~iv 408 (1433)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=319.20 Aligned_cols=203 Identities=33% Similarity=0.527 Sum_probs=165.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD---SSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 244 (1433)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 66 99999999887543345679999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHH-HHHHhCCCccccccccCc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDY-ILKILGLDVCADTMVGDE 323 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-il~~lgL~~~~dt~vg~~ 323 (1433)
+||+||+.|+....+.... ... ......+. .++.+++++..++.+
T Consensus 96 ~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 141 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS-------SDA------------------------IRKKRVEDVLLRDLALTRIGGNLV--- 141 (226)
T ss_pred CcHHHHHHHHHHhhccccc-------chH------------------------HHHHHHHHHHHHhhcchhhhcccc---
Confidence 9999999987543211000 000 00011233 788888876665554
Q ss_pred ccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hhHHhhcCeEEEe
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPA-PETYDLFDDIILI 402 (1433)
Q Consensus 324 ~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~vilL 402 (1433)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ . +.+++.++|+. .++.+++|++++|
T Consensus 142 --~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 142 --KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-R-NRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred --cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCCCHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 45566577776 6899999999999
Q ss_pred cCCeEEEec
Q 000541 403 SDGQIVYQG 411 (1433)
Q Consensus 403 ~~G~iv~~G 411 (1433)
++|+++++|
T Consensus 218 ~~G~i~~~g 226 (226)
T cd03234 218 SSGEIVYSG 226 (226)
T ss_pred eCCEEEecC
Confidence 999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=323.04 Aligned_cols=218 Identities=22% Similarity=0.270 Sum_probs=175.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899988763 246999999999999999999999999999999999986531 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~ 985 (1433)
.++.. ...++.++|++|++.+++ .|++||+.|....... .......+.++++++.+++.+ +.+.. . ...
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~ 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-K-KSA 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCc
Confidence 87632 123567999999988887 8999999886543211 122333456778899988742 11111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G 222 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-G 222 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999876 689999999975 56778999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 223 ~i~~~~~~ 230 (251)
T PRK14270 223 DLIEFNKT 230 (251)
T ss_pred eEEEeCCH
Confidence 99999885
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=291.37 Aligned_cols=205 Identities=24% Similarity=0.358 Sum_probs=176.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 248 (1433)
..+|+|+|+.|.+||.+.++||||||||||||+++|..+|. .|+|.+||.+++... ..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--ccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 999999999886532 3458999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCC
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 328 (1433)
||++|+.+++|..... ...++.+.+...||++..+.. +-.|
T Consensus 93 dNvafgL~l~Gi~k~~----------------------------------R~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ----------------------------------RREIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHHH----------------------------------HHHHHHHHHHHhCcccccccc-----eEee
Confidence 9999999998863211 123456688999999876644 4569
Q ss_pred chhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEec--CCe
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS--DGQ 406 (1433)
Q Consensus 329 SGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 406 (1433)
||||||||.|||||..+|+.|+||||+.+||.-|+.++-+.|-++.+..+ +.+..|+|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999999887654 556669999999999999999998 479
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
|+..=|++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998777664333
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=324.65 Aligned_cols=205 Identities=24% Similarity=0.340 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC----------------cccceE
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF----------------VPQRTA 232 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 232 (1433)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999887 99999999876421 113579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHH-hcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 000541 233 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG 311 (1433)
Q Consensus 233 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 311 (1433)
+|++|++.+++.+||+||+.++.. ..+. .. .+....+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SK------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCC----------CH------------------------HHHHHHHHHHHHHcC
Confidence 999999988999999999987542 1110 00 001123456889999
Q ss_pred CCccc-cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 000541 312 LDVCA-DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAP 390 (1433)
Q Consensus 312 L~~~~-dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 390 (1433)
|++.. +.. .+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|++++|+..
T Consensus 141 l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 97653 443 346999999999999999999999999999999999999999999999854 3567777999999
Q ss_pred hHHhhcCeEEEecCCeEEEecChhHHH
Q 000541 391 ETYDLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 391 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=314.11 Aligned_cols=194 Identities=20% Similarity=0.334 Sum_probs=150.3
Q ss_pred CceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcC
Q 000541 832 KPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG 911 (1433)
Q Consensus 832 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 911 (1433)
.|..+-++||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|... +..|+.+-|-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKnh 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKNH 648 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhccc
Confidence 345688899998874 34679999999999999999999999999999999999887 4467654321
Q ss_pred ccCCcccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 912 YPKKQETFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 912 ~~~~~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
+-.+|+..|+. .+...-|+-|.|.-. ..+|. +.....+-.+||...++++- ++.||
T Consensus 649 --------rL~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlpy--------q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 649 --------RLRIGWFDQHANEALNGEETPVEYLQRK--FNLPY--------QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------eeeeechhhhhHHhhccccCHHHHHHHh--cCCCh--------HHHHHHhhhhhhhhccceEe----eeecC
Confidence 23578888763 445667888877421 12221 12334677888888888763 57899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
||||-||++|.--++.|+||+|||||++||..+...+-+.|+++ ...||+++|+-+. +.+.-|.++++.+.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999999999999999999999999999999999887 4579999998653 455556777776543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.50 Aligned_cols=215 Identities=22% Similarity=0.308 Sum_probs=174.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899988773 235999999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. .+....++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 124567999999988777 8999999886543211 122334456778888888742 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999964 4677899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 899998874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=322.47 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcceEEEECCccCCCCcc----cceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL--DSSLRVSGRVTYNGHDMDEFVP----QRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 9999999988754332 23489999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc-ccccccc
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-CADTMVG 321 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg 321 (1433)
+.+|++|++.+..+........ ... + ..+....++.+++.+||++ ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~---~~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGE---EPL-------------D-----------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccccc---ccc-------------c-----------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 9999999998865421100000 000 0 0011123567889999974 4555443
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL-FDDII 400 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~vi 400 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999854 356777789999999888 89999
Q ss_pred EecCCeEEEecChhHHH
Q 000541 401 LISDGQIVYQGPREHVL 417 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~ 417 (1433)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=326.52 Aligned_cols=205 Identities=28% Similarity=0.389 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC--c---ccceEEEEcCCCC-CC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--V---PQRTAAYISQHDN-HI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 242 (1433)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35999999999999999999999999999999999999987 99999999887421 1 2357999999863 44
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
..+||+||+.++....+. .+. +....+..+++.+||++..++.++
T Consensus 92 ~~~tv~e~i~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~- 136 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGL----------SKE------------------------EVEKRVKEALKAVGMEGFENKPPH- 136 (275)
T ss_pred ccccHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHCCCchhhcCChh-
Confidence 567999999886432110 000 011234568899999887777665
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||++++|
T Consensus 137 ----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 137 ----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999864 2 567777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=323.05 Aligned_cols=209 Identities=25% Similarity=0.331 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCCc---ccceEEEEcCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEFV---PQRTAAYISQHDNHIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 243 (1433)
..+|+|+|++|++||+++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 46999999999999999999999999999999999998741 123899999999875432 2357999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc----ccccc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV----CADTM 319 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~ 319 (1433)
.+||+||+.++.+..+... .. .+....++.+++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK--------SK------------------------KELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC--------CH------------------------HHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999998754221100 00 001123456788889864 23443
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+++|++
T Consensus 144 -----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 144 -----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEE
Confidence 456999999999999999999999999999999999999999999999742 467777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.45 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=175.0
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcCc
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISGY 912 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 912 (1433)
++++|+++.++ ++.+|+|+|+++++||+++|+|+|||||||||++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78899988763 235999999999999999999999999999999999986521 26899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 913 PKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 913 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
++.. ...++.++|++|++.+++ .|++||+.+...... .......++.++++++.+++.+..+.... .....
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7542 133567999999988877 899999987653321 11122334557788888888542111111 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.+ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999975 46778999999986 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 998875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=324.98 Aligned_cols=208 Identities=25% Similarity=0.343 Sum_probs=172.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc------cceEEEEcCCC--
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP------QRTAAYISQHD-- 239 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 239 (1433)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 9999999988764321 34699999986
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADT 318 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 318 (1433)
.+.+.+||+||+.+...... .... .+....++.+++.+||+ +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~---------~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT---------SLDE------------------------SEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc---------CCCH------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 46678999999987543110 0000 00112345688999996 55565
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+.+.+++|+
T Consensus 147 ~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 LP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcE
Confidence 54 469999999999999999999999999999999999999999999998653 356777799999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000541 399 IILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~ 417 (1433)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=319.14 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=168.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcceEEEECCccCCCCcc-cceEEEEcCCCC--CCC
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS----SLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 243 (1433)
Q Consensus 171 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 243 (1433)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 9999999988764422 257999999974 557
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc---cccccc
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV---CADTMV 320 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~v 320 (1433)
.+|++|++.+.....+.. . .+....++.+++.+||++ ..+..+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999998764321110 0 001123566889999973 334444
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
..|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++.+. .+++|+.++|+.+++..++|+++
T Consensus 124 -----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 124 -----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998643 35677778999999999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000541 401 LISDGQIVYQGPREHVL 417 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~ 417 (1433)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=316.01 Aligned_cols=173 Identities=25% Similarity=0.312 Sum_probs=136.4
Q ss_pred eccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000541 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLL 943 (1433)
Q Consensus 864 L~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 943 (1433)
|.-=.+.+..||+++++||||-||||+.++|+|..+ +.+|. .. .-.++|=||--.-....||++.|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 444457889999999999999999999999999887 44675 11 124688888755557789999885
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000541 944 YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023 (1433)
Q Consensus 944 f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~ 1023 (1433)
-...-+.. ..-+..++.+-|.|.++.+..+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43322111 1224567888899998888764 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 1024 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 1024 ~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
..+-+.||+...+ ++|.+++-||.-+ +--..|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998854 7899999998542 223457777664
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=317.60 Aligned_cols=201 Identities=27% Similarity=0.441 Sum_probs=162.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCC--CCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHI--GEM 245 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~l 245 (1433)
++++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. ..+
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCC
Confidence 356999999999999999999999999999999999999987 9999999987642 345799999997653 348
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++...... . .. ... .+....++.+++.+||++..++.++
T Consensus 86 tv~e~l~~~~~~~~~-~-~~---~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 131 (213)
T cd03235 86 SVRDVVLMGLYGHKG-L-FR---RLS-------------------------KADKAKVDEALERVGLSELADRQIG---- 131 (213)
T ss_pred cHHHHHHhccccccc-c-cc---CCC-------------------------HHHHHHHHHHHHHcCCHHHHhCCcc----
Confidence 999999886431100 0 00 000 0011235668899999876666654
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++++|.++|+.+++.+++|++++|++|
T Consensus 132 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 132 -ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 5999999999999999999999999999999999999999999999865 3567777999999999999999999886
Q ss_pred eEEEec
Q 000541 406 QIVYQG 411 (1433)
Q Consensus 406 ~iv~~G 411 (1433)
+++.|
T Consensus 209 -~~~~g 213 (213)
T cd03235 209 -VVASG 213 (213)
T ss_pred -EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.30 Aligned_cols=219 Identities=22% Similarity=0.247 Sum_probs=174.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467889988763 246999999999999999999999999999999999987632 3589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 912 YPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 912 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
.++.. ...++.++|++|++.+++ .||.||+.+...... .......++.++++++.+++.+........ ....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87531 234567999999988887 899999987643221 011223345567788888875321111111 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999975 56778999999985 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.86 Aligned_cols=214 Identities=22% Similarity=0.288 Sum_probs=174.5
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC--eeeeEEEEcC
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YISGSIMISG 911 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G 911 (1433)
..++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3688999998762 24899999999999999999999999999999999987631 1689999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc---ccccccCCCC
Q 000541 912 YPKKQETF-ARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL---RQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~~~~-~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~---~~~~vg~~~~ 985 (1433)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ..++.++++++.+++.+. .+.. .
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87653322 356999999974 4566899999876543221 11 123567889999999762 3333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 45677899999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 899998875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=327.02 Aligned_cols=216 Identities=21% Similarity=0.289 Sum_probs=179.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++.. ....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999887410 12359999999999999999999999999999999999987 5689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDI-HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ...++.+||++|++. .++..||.||+.+..... .....+..+.++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 577789999998764322 122333445678999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999753 3 46999999986 89999
Q ss_pred EcCC
Q 000541 1070 VGSL 1073 (1433)
Q Consensus 1070 ~G~~ 1073 (1433)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=330.57 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
..+|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++..
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 12389999999998532 224679999999876
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
+ +.||+|||.|+....+. ...+ .....++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~----------~~~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGI----------NDRK-----------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCC----------ChHH-----------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 6 58999999987532211 0000 001123456777777655555565
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+ ....|||||||||+||||++.+|+|++|||||+|||+.+...+.+.|+++.+ +.|+++++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4457999999999999999999999999999999999999999999998743 46778899999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999985
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=324.46 Aligned_cols=207 Identities=20% Similarity=0.306 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 358999999999999999999999999999999999998621 1389999999876421 124579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
+ .+||+||+.|+....+... . ......++.+++.+|+. +..+
T Consensus 100 ~-~~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 F-LMSIYDNISYGPKIHGTKD---------K------------------------KKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred c-cCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHhCCchhhHHHHh
Confidence 7 4899999998754321100 0 00112244567777763 3345
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+.+ +.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|
T Consensus 146 ~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 146 TNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 444 46999999999999999999999999999999999999999999999842 3677779999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
++++|++|+++..|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.55 Aligned_cols=216 Identities=22% Similarity=0.300 Sum_probs=176.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC-e--eeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~-~--~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999998773 235999999999999999999999999999999999986532 2 489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. .+..+.++.++++++.+++.+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87532 234467999999988887 8999999876543311 122333456778888888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
....||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 2457999999999999999999999999999999999999999999999865 699999999975 5778899999997
Q ss_pred c----CcEEEEEcCC
Q 000541 1063 R----GGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~----gG~~~y~G~~ 1073 (1433)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999986
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=322.08 Aligned_cols=204 Identities=27% Similarity=0.346 Sum_probs=169.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCC------C---cccceEEEEcCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE------F---VPQRTAAYISQHD 239 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d 239 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 45999999999999999999999999999999999999887 9999999987631 1 1135699999999
Q ss_pred CCCCCCCHHHHHHHHH-HhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 240 NHIGEMTVRETLAFSA-RCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
.+++.+||+||+.+.. ...+. ... +....++.+++.+||++..+.
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGL----------SKD------------------------QALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCChhhhhC
Confidence 8999999999997532 11110 000 011234668889999876666
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .++++++++|+..++.+++|+
T Consensus 138 ~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 138 FPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCE
Confidence 554 6999999999999999999999999999999999999999999998753 356777789999999999999
Q ss_pred EEEecCCeEEEecChhHH
Q 000541 399 IILISDGQIVYQGPREHV 416 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~ 416 (1433)
+++|++|+++++|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.18 Aligned_cols=201 Identities=23% Similarity=0.374 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 35899999999999999999999999999999999999987 999999998875432 2357999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccccccCcc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGDEM 324 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~ 324 (1433)
||+||+.++....+ . ....++.+++.+||+ +..++.+
T Consensus 92 tv~e~l~~~~~~~~----~----------------------------------~~~~~~~~l~~~~l~~~~~~~~~---- 129 (241)
T PRK14250 92 TVKDNIEYGPMLKG----E----------------------------------KNVDVEYYLSIVGLNKEYATRDV---- 129 (241)
T ss_pred hHHHHHhcchhhcC----c----------------------------------HHHHHHHHHHHcCCCHHHhhCCc----
Confidence 99999987532110 0 001234578889996 3445443
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
..||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|+|++|++
T Consensus 130 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 130 -KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999987653 256677799999999999999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=326.62 Aligned_cols=205 Identities=22% Similarity=0.332 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCCC-
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHDN- 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 240 (1433)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999998875421 2356999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc-ccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-CADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~ 319 (1433)
.+...||+||+.|.....+.. .. +....++.+++.+||+. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QE------------------------EAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhCC
Confidence 344579999999865322110 00 01123456788899973 44554
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
+ +.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+ . +++|++++|+..++.+++|++
T Consensus 143 ~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 P-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999854 3 567777899999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.27 Aligned_cols=206 Identities=27% Similarity=0.386 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999998765332 4579999999988889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.++....+.. . ......++.+++.+||++..++.+. .
T Consensus 90 ~~nl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T cd03300 90 FENIAFGLRLKKLP--K--------------------------------AEIKERVAEALDLVQLEGYANRKPS-----Q 130 (232)
T ss_pred HHHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99998865432110 0 0011234668899999877776654 6
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|+.++|+..++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 255666688999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=318.83 Aligned_cols=202 Identities=27% Similarity=0.360 Sum_probs=167.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCCCCCCCHHHHH
Q 000541 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 251 (1433)
Q Consensus 172 L~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 251 (1433)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999988765332 248999999889999999999
Q ss_pred HHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchh
Q 000541 252 AFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGG 331 (1433)
Q Consensus 252 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGG 331 (1433)
.++...... .... .+....++.+++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~--------~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLP--------DLSK------------------------SERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhccc--------CCCH------------------------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 886321000 0000 0011234568899999877776654 59999
Q ss_pred HhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 000541 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411 (1433)
Q Consensus 332 qrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 411 (1433)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999988653 3566777999999999999999999999999988
Q ss_pred ChhHH
Q 000541 412 PREHV 416 (1433)
Q Consensus 412 ~~~~~ 416 (1433)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.96 Aligned_cols=216 Identities=22% Similarity=0.274 Sum_probs=174.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCe---eeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 911 (1433)
.+.++|+++.++ ++.+|+|+|+.+++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477889988763 2469999999999999999999999999999999999875432 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345679999999999999999999987643221 1112233445666777776542 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 4667789999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.68 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=175.0
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+... .+.+.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788888876310 112569999999999999999999999999999999999876 56899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000541 916 QE------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LS 989 (1433)
.. ..++.++|++|++.+++.+|+.||+.+...... .....+..+.++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999988888999999988654321 1223344556889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999886 4899999999974 5678999999985 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=354.79 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=182.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|++++++ ++.+|+|+|+++.+||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 78899998773 2469999999999999999999999999999999999887 45899999998753
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 QE----TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..++.++|++|++.+++.+||+|++.+....+.. ...+..+.++.++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1235689999999889999999999886432211 11122333456788999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 56678899999985 899999
Q ss_pred cCCCc
Q 000541 1071 GSLGR 1075 (1433)
Q Consensus 1071 G~~~~ 1075 (1433)
|+...
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.27 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=169.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCC-CCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 245 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 245 (1433)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999999987 999999999875432 2357999999974 68888
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|+++|+.|.....+.. .. +....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------YD------------------------EMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998865432110 00 01123456789999987766655
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 235667778888888875 9999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.35 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=177.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.+. ...+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998873 135999999999999999999999999999999999987632 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ...++.++|++|+..+++ .|+.||+.+....... .+..+..+.++++++.+++.+..+...+. ...
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567999999988887 8999999876432210 12223345678889999885422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEecC-
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG- 1064 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g- 1064 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999875 4899999999975 577889999999863
Q ss_pred ---cEEEEEcCC
Q 000541 1065 ---GQEIYVGSL 1073 (1433)
Q Consensus 1065 ---G~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999886
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=330.99 Aligned_cols=221 Identities=19% Similarity=0.238 Sum_probs=177.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~ 910 (1433)
..++++|+++.+.. +.+.+|+|+|++|++||++||+|+|||||||||++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36899999988741 123599999999999999999999999999999999998642 2458999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHHcCCcccccccccCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVD-SPTRKMFIEEVMELVELNPLRQALVGLPG 984 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~-~~~~~~~v~~vl~~l~l~~~~~~~vg~~~ 984 (1433)
|.++.. ...++.++||+|++.+++ .|++||+.|..... ... .+..++.++++++.+++.+-.+..++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 234667999999988774 79999999864321 112 1222344677888888753222333332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|.+
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999875 699999999964 35566999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++..|++
T Consensus 300 G~i~e~g~~ 308 (329)
T PRK14257 300 GWIEEAGET 308 (329)
T ss_pred CEEEEeCCH
Confidence 899999986
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.38 Aligned_cols=215 Identities=23% Similarity=0.262 Sum_probs=174.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc-
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP- 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 913 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 488999998763 2359999999999999999999999999999999999877 468999999986
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-ccccc
Q 000541 914 ----KKQE---T----FARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQAL 979 (1433)
Q Consensus 914 ----~~~~---~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~ 979 (1433)
+... . .++.++|++|+.. +.+.+|+.|++.+..... .. ....+.+..++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GA-RHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-cc-CcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999973 567889999997643211 11 112233456788899999863 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcce
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDEL 1058 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~ 1058 (1433)
+..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999964 455678999
Q ss_pred eEEecCcEEEEEcCC
Q 000541 1059 FLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1059 ~ll~~gG~~~y~G~~ 1073 (1433)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899999875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.62 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=176.1
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 911 (1433)
.++++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 589999998873 23599999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.+... ..+++.++|++|+..+++. |++||+.+....+. .......++.++++++.+++.+........ ...
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Ccc
Confidence 87642 1345679999999888876 99999987654321 111222345577888888885311111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999976 799999999975 46678999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 245 i~~~g~~ 251 (272)
T PRK14236 245 LVEYGDT 251 (272)
T ss_pred EEecCCH
Confidence 9998875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.19 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=171.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+++|+.+++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 488999988763 2359999999999999999999999999999999999887 4589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
.....++.++|++|++.+++.+|+.|++.+....+. ...++.++++++.+++.+..+..+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999888888999999987654321 112345678899999987766653 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
|++||++++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999975 5778889998886
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.45 Aligned_cols=213 Identities=22% Similarity=0.333 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCC--CC---cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMD--EF---VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~--~~---~~~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. .. ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 45999999999999999999999999999999999998762 123899999999875 21 123579999999989
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++....+.... .. +....++.+++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKS--------KK------------------------ELDERVEWALKKAALWDEVKDRL- 143 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCC--------HH------------------------HHHHHHHHHHHHcCCccchhhhh-
Confidence 9999999999987542211000 00 01112455778888743111111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+||+++|+.+++.+++|+|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEE
Confidence 233457999999999999999999999999999999999999999999999753 3 6777799999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 221 LYLGKLIEVGPTRKVF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=360.19 Aligned_cols=209 Identities=29% Similarity=0.453 Sum_probs=170.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 244 (1433)
++++|+|+|+.++|||.++|+||+|||||||+++|.|.++|+ +|+|.+||+++.+... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 356999999999999999999999999999999999999997 9999999999887654 478999999887776
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||+|||.++..- .-.+++.+..+.+ ...|.+. .++++.||.||+++
T Consensus 417 ~TI~~NI~~g~~~-------at~eei~~a~k~a-----------------------~~~d~I~---~lp~g~dt~vge~G 463 (567)
T COG1132 417 GTIRENIALGRPD-------ATDEEIEEALKLA-----------------------NAHEFIA---NLPDGYDTIVGERG 463 (567)
T ss_pred ccHHHHHhcCCCC-------CCHHHHHHHHHHh-----------------------ChHHHHH---hCcccccceecCCC
Confidence 8999999997421 0001111111111 1112222 36888999999665
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
. .||||||||++||||++.+|+|++||||||+||+.+...|.+.++++. .++|+++ +.|..+.+.+ +|+|++|++
T Consensus 464 ~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 464 V-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 5 699999999999999999999999999999999999999999999764 3456666 7887766655 999999999
Q ss_pred CeEEEecChhHHHH
Q 000541 405 GQIVYQGPREHVLE 418 (1433)
Q Consensus 405 G~iv~~G~~~~~~~ 418 (1433)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=330.27 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCccCCCCcc-------cceEEEEcCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYNGHDMDEFVP-------QRTAAYISQHDN 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 240 (1433)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986421 238999999998765432 136999999965
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 241 --HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 241 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
+.+.+||.+++.+......... .. ..+ ..+....+..+|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~--~~---~~~-----------------------~~~~~~~~~~~L~~~gL~~~~~- 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKG--RW---WQR-----------------------FGWRKRRAIELLHRVGIKDHKD- 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccc--cc---ccc-----------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 5788999999976432110000 00 000 0011123567899999975321
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
+-+.....|||||||||+||+||+.+|+++++||||+|||+.++.++.+.|+++.+. .+.++++++|+...+.+++|+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCE
Confidence 113344579999999999999999999999999999999999999999999998653 356788899999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000541 399 IILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~ 417 (1433)
|++|++|+|++.|+.+++.
T Consensus 229 i~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 229 INVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=325.45 Aligned_cols=210 Identities=24% Similarity=0.396 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999988754322 34699999999888899
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++..-.. ....... ......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~-----~~~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 97 TVQELVARGRYPHQ-----PLFTRWR-------------------------KEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred cHHHHHHhCccccc-----ccccCCC-------------------------HHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 99999987521000 0000000 001123466889999987666655
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 3567777899999999999999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=355.26 Aligned_cols=219 Identities=26% Similarity=0.322 Sum_probs=182.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899998773 2469999999999999999999999999999999999886 4689999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhc--C-CC-CCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 915 KQET----FARISGYCEQNDIHSPNVTVYESLLYSAWLR--L-PL-EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 915 ~~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr--~-~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.... .++.++|++|++.+++.+||+|++.+..... . .. ..+..+.++.++++++.+++.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 4311 2346999999998899999999998753211 0 00 0122334456888999999987777654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|.+ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999974 45677899999985 89
Q ss_pred EEEEcCCCc
Q 000541 1067 EIYVGSLGR 1075 (1433)
Q Consensus 1067 ~~y~G~~~~ 1075 (1433)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998643
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=312.27 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=163.9
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999877 46899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ..+++.++|++|++.+++.+||.|++.+....+. ...++.++++++.+++.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG------PGDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC------ccHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988899999999988654321 02235678899999998776654 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhc-ceeE
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD-ELFL 1060 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd-~~~l 1060 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ....|+ +++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~~~ 201 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL--PVASDKVRKLR 201 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh--hhccCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999974 344454 4433
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.82 Aligned_cols=195 Identities=25% Similarity=0.388 Sum_probs=164.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 252 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 252 (1433)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999988754432 357999999998899999999998
Q ss_pred HHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhH
Q 000541 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQ 332 (1433)
Q Consensus 253 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 332 (1433)
++...... ..+ +....++.+++.+||++..++.+. .|||||
T Consensus 93 ~~~~~~~~---------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK---------LTA-------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGE 133 (211)
T ss_pred cccccccC---------ccH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHH
Confidence 75421100 000 011234668899999877776654 699999
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEec
Q 000541 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411 (1433)
Q Consensus 333 rqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 411 (1433)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++++. .+.+|+.++|+..++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998643 3566777999999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=321.40 Aligned_cols=219 Identities=23% Similarity=0.282 Sum_probs=177.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999999874 246999999999999999999999999999999999987631 3689999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000541 912 YPKKQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 912 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~ 987 (1433)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+..+....+.++++.+++.+..+.... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234567999999988877 799999987643221 12233334456778888988643221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEE
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 988 LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~ 1067 (1433)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999974 56778999999985 899
Q ss_pred EEEcCC
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 ~y~G~~ 1073 (1433)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=316.48 Aligned_cols=204 Identities=27% Similarity=0.464 Sum_probs=173.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCHHH
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 249 (1433)
Q Consensus 171 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 249 (1433)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999987 9999999998765332 357999999998899999999
Q ss_pred HHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCc
Q 000541 250 TLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329 (1433)
Q Consensus 250 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 329 (1433)
|+.++....+.. .. +....++.+++.+||++..++.+. .||
T Consensus 91 ~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------KK------------------------EIERKVLEIAEMLGIDHLLNRKPE-----TLS 131 (235)
T ss_pred HHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 998864322110 00 011134567888999877776664 599
Q ss_pred hhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000541 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409 (1433)
Q Consensus 330 GGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 409 (1433)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++... +++++.++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986532 5667778899999999999999999999999
Q ss_pred ecChhHHH
Q 000541 410 QGPREHVL 417 (1433)
Q Consensus 410 ~G~~~~~~ 417 (1433)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=324.94 Aligned_cols=210 Identities=23% Similarity=0.376 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999887 9999999987654322 35699999998888999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||.||+.++..... +. ... . . ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~-~~----~~~-----------~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA----LGR-----------F-G-------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc-cc----ccC-----------C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 00 000 0 0 0011234668899999876676665
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++. .+++|+.++|+.+++.+++|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998653 2566777899999999999999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.13 Aligned_cols=201 Identities=24% Similarity=0.313 Sum_probs=165.9
Q ss_pred eeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC--eeeeEEEEcCccCCcccc-cceEEEeccCCC--CCCCCC
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YISGSIMISGYPKKQETF-ARISGYCEQNDI--HSPNVT 937 (1433)
Q Consensus 863 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~~~~~~-~~~~gyv~Q~d~--~~~~lT 937 (1433)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987631 168999999987654322 357899999974 557789
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000541 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP---LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014 (1433)
Q Consensus 938 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~---~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEP 1014 (1433)
+.|++.+...... ......++.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112233456788999999973 33443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1015 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1015 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999864 899999999975 56678999999985 899998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=324.11 Aligned_cols=216 Identities=24% Similarity=0.332 Sum_probs=173.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc--------ccceEEEEcCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV--------PQRTAAYISQHDN 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 240 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 46999999999999999999999999999999999999875223699999998764321 1346899999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
+++.+||+||+.++...... ...+. ... . ..+....++.+++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~--~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC--FSW-F--------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh--ccc-c--------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 89999999999876421000 00000 000 0 0011224567899999987777665
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
+ .|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++. ++++||+++|+.+++.+++|+|+
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999998653 35777779999999999999999
Q ss_pred EecCCeEEEecChhHH
Q 000541 401 LISDGQIVYQGPREHV 416 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~ 416 (1433)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=319.65 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=173.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.++++|+++.+. ++.+|+|+|+++.+|++++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477899988763 235999999999999999999999999999999999987632 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ...++.++|++|++.+++. |++||+.+....+.. . ..+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 999999887543211 1 112233456777888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999975 46677899999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=357.42 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=175.9
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++||+|+++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|... +.+|+|++||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 36999999999841 2359999999999999999999999999999999999987 568999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+++.+|||+|++.+++. |++||+.+... | +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 4567889999999988765 99999987521 1 222 2335566666665432 35667664
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999985 4799999999975 5688999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=311.63 Aligned_cols=195 Identities=28% Similarity=0.355 Sum_probs=165.2
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5678877663 2469999999999999999999999999999999999887 458999999987532
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 917 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 917 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
..+++.++|++|++.+++.+|++|++.+.... . .++.++++++.+++.+..++. ...|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHH
Confidence 23456799999998888899999999875311 0 234578899999998776655 3579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEE
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll 1061 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++. +....+++++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998877999999999975 566777887766
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=357.83 Aligned_cols=214 Identities=30% Similarity=0.440 Sum_probs=178.1
Q ss_pred ceeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCc
Q 000541 833 PHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912 (1433)
Q Consensus 833 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 912 (1433)
...++|+||+|+|+..+ +..+|+|+|+.|++|+.+||+|||||||||++++|.+... |.+|+|.+||.
T Consensus 348 ~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~ 415 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGE 415 (1228)
T ss_pred ccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCc
Confidence 34699999999997543 3569999999999999999999999999999999999887 66999999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHc-------CCcccccccccC
Q 000541 913 PKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-------ELNPLRQALVGL 982 (1433)
Q Consensus 913 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-------~l~~~~~~~vg~ 982 (1433)
++.. +.++..+|.|.|+|.++ ..|++||+.|+- .+.+.+ .++++.+.. .|.+-.|+.+|.
T Consensus 416 di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~----~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 416 DIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATRE----EIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred cchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHH----HHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 8754 35677899999999765 579999998852 122222 233333332 344456788887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
.++ .||||||||++|||||++||+||+||||||+||+.+...|+++|++.. .|+|.|+++|+.| ....+|++++|.
T Consensus 486 ~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEEE
Confidence 765 499999999999999999999999999999999999999999998864 6999999999865 466699999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|..
T Consensus 562 ~-G~IvE~G~h 571 (1228)
T KOG0055|consen 562 E-GKIVEQGTH 571 (1228)
T ss_pred C-CEEEEecCH
Confidence 6 899999986
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=324.64 Aligned_cols=208 Identities=24% Similarity=0.352 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 244 (1433)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999886222399999999876432 2357999999964 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||+||+.|..+..+. ... +....++.+++.+||++..++.+
T Consensus 100 ~tv~enl~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~---- 141 (282)
T PRK13640 100 ATVGDDVAFGLENRAV----------PRP------------------------EMIKIVRDVLADVGMLDYIDSEP---- 141 (282)
T ss_pred CCHHHHHHhhHHhCCC----------CHH------------------------HHHHHHHHHHHHCCChhHhcCCc----
Confidence 9999999886432211 000 11123566889999987666555
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..||++++|++
T Consensus 142 -~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998653 356677788888887 57999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.93 Aligned_cols=209 Identities=25% Similarity=0.401 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 245 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+...++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999887 999999998765432 134699999998888889
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++.... ........ ......++.+++.+||++..++.++
T Consensus 92 tv~~~i~~~~~~~-----~~~~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 92 TVRELVAYGRSPW-----LSLWGRLS-------------------------AEDNARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred cHHHHHHhccchh-----hhhccCCC-------------------------HHHHHHHHHHHHHcCCHHHHcCCcc----
Confidence 9999998853100 00000000 0011234668889999877776654
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+++++.++|+.+++.+++|++++|++|
T Consensus 138 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 138 -DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998754 2567777999999999999999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=315.19 Aligned_cols=195 Identities=23% Similarity=0.391 Sum_probs=163.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCC-----cccceEEEEcCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNHIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 243 (1433)
+.+|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999887 99999999877421 12357999999998889
Q ss_pred CCCHHHHHHHHHHh-cCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 244 EMTVRETLAFSARC-QGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
.+||+||+.++... ++. ... +....++.+++.+||++..++.+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 134 (213)
T cd03262 90 HLTVLENITLAPIKVKGM----------SKA------------------------EAEERALELLEKVGLADKADAYPA- 134 (213)
T ss_pred CCcHHHHHHhHHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCCHhHhhhCcc-
Confidence 99999999886421 110 000 011234567888999876666654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|++++|
T Consensus 135 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 135 ----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999864 2 566777999999999999999999
Q ss_pred cCCeE
Q 000541 403 SDGQI 407 (1433)
Q Consensus 403 ~~G~i 407 (1433)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.11 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNHI 242 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 242 (1433)
.+|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2112389999999887421 1235799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+ .||+||+.++.+.... .... +....++.+++.+|+........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEK---------LSRA------------------------EMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCC---------CCHH------------------------HHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999886542110 0000 01123456788888743111111 1
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
+....||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++. . +++||.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--Q-DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 2344699999999999999999999999999999999999999999999974 2 456777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=319.87 Aligned_cols=218 Identities=24% Similarity=0.290 Sum_probs=174.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 911 (1433)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999998763 246999999999999999999999999999999999975421 2489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~ 985 (1433)
.++.. ...++.++|++|++.+++. ||+||+.|....+.. ......++.++++++.+++.+ +.+.. . ...
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~ 147 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-H-DSA 147 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-h-cCh
Confidence 87642 2335679999999888874 999999987544311 112233456778888888743 11111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14261 148 LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-G 224 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 689999999974 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14261 225 KLIEFDKT 232 (253)
T ss_pred EEEEcCCH
Confidence 99998885
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.33 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+.|++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++..
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 359999999999999999999999999999999999864 1001389999999887531 113579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ .||+||+.++....+.... . .....++.+++.+||.+...+..
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK---------A------------------------YLAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999987543221000 0 01122445677788754221111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
++..+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tvii~tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--A-RYTIIIVTHNMQQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCeEEEEEecHHHHHHhCCEEEE
Confidence 23345799999999999999999999999999999999999999999999973 2 35777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+++++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 221 FYMGKLIEVGPTEQIF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=321.27 Aligned_cols=205 Identities=22% Similarity=0.306 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCC-CCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 244 (1433)
..+|+|+|+++++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 999999998875422 2357999999964 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
.||.||+.++.+..+. .+. +....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGI----------PRE------------------------EMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCC----------CHH------------------------HHHHHHHHHHHHCCCHhHhhCCc----
Confidence 9999999886532111 000 01123567888899987666655
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999988653 2566777899998886 6999999999
Q ss_pred CeEEEecChhHHH
Q 000541 405 GQIVYQGPREHVL 417 (1433)
Q Consensus 405 G~iv~~G~~~~~~ 417 (1433)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=327.63 Aligned_cols=205 Identities=20% Similarity=0.311 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCC----C----cccceEEEEcCCCC-
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE----F----VPQRTAAYISQHDN- 240 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 240 (1433)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5899999999999999999999999999999999999887 9999999987642 1 12356999999863
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-cccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTM 319 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 319 (1433)
.+...||+||+.|+....+. ... +....++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~----------~~~------------------------~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGE----------NKQ------------------------EAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhcCC
Confidence 23356999999986432111 000 0112245678889995 455655
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||++
T Consensus 148 ~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 PF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 44 69999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=316.30 Aligned_cols=206 Identities=27% Similarity=0.421 Sum_probs=173.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCH
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 247 (1433)
+++|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999887 9999999988764333 3579999999988889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.+..+..+. ... .....++.+++.+|+....++.++ .
T Consensus 90 ~enl~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKH----------PKA------------------------KIKARVEELLELVQLEGLGDRYPN-----Q 130 (237)
T ss_pred HHHHHhHHHhcCC----------CHH------------------------HHHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 9999886543211 000 001124567888999766666554 5
Q ss_pred CchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeE
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 407 (1433)
||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.. ..+.+++.++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 2356677788999999999999999999999
Q ss_pred EEecChhHHH
Q 000541 408 VYQGPREHVL 417 (1433)
Q Consensus 408 v~~G~~~~~~ 417 (1433)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=363.51 Aligned_cols=210 Identities=25% Similarity=0.392 Sum_probs=174.3
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||++.+. +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986542 1246999999999999999999999999999999999987 4 48999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-------LRQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~vg~~ 983 (1433)
+.+ ..+++.++||+|++.++. -|++||+.++. | +.++ +.++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998876 49999998752 1 2222 33555666655543 236777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
| ..||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999885 5799999999974 5778999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 899998874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.78 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=173.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--C-CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998773 2359999999999999999999999999999999999642 1 14689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1245679999999888875 99999987643221 1111223445677888888742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4677899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.43 Aligned_cols=224 Identities=21% Similarity=0.320 Sum_probs=182.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC-C-C-eeeeEEEEcCc
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YISGSIMISGY 912 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~-~-~-~~~G~I~i~G~ 912 (1433)
++.+|++.++... .+...+++||||++++||++||+|.||||||||.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678887766532 123579999999999999999999999999999999999876 2 2 46789999998
Q ss_pred cCCc---c---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCC
Q 000541 913 PKKQ---E---TF-ARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983 (1433)
Q Consensus 913 ~~~~---~---~~-~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~ 983 (1433)
++-. + .+ -+.+++++|++ .+.|..||.+.+.-......... .+++..+++.++++.+++.+-...+...|
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 6422 2 12 24699999996 57899999988865554332111 34455667888999999987554444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
..|||||||||.||.||+.+|++|+.||||++||...+++|+++|+++.+ .|.|+|++|||.. -+.+.+|+|++|.
T Consensus 152 --helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 152 --HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred --cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 47999999999999999999999999999999999999999999999986 5999999999975 4788999999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
. |++|..|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=314.75 Aligned_cols=197 Identities=28% Similarity=0.373 Sum_probs=163.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcCCCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHDNHI 242 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 242 (1433)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999987 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+.+||+||+.++....+. .. .+....++.+++.+||++..+..++
T Consensus 101 ~~~tv~~~l~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGE----------SS------------------------RQSRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCCHhHhhCChh-
Confidence 999999999886432210 00 0011234668899999877666654
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++ +.+|++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 345666688888877 559999999
Q ss_pred cCCeEEEe
Q 000541 403 SDGQIVYQ 410 (1433)
Q Consensus 403 ~~G~iv~~ 410 (1433)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.20 Aligned_cols=209 Identities=28% Similarity=0.422 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999988765332 34689999998778889
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++..... ... . .+ ..+....++.+++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------A-GD--------------SPHDAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 99999988531000 000 0 00 00011234568889999876666654
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+++|+.++|+.+++.+++|+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999999753 3567777999999999999999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
+++..|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=319.51 Aligned_cols=219 Identities=17% Similarity=0.204 Sum_probs=176.6
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 910 (1433)
..+.++++++.+. ++.+|+|+|+.++|||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3567777776652 356999999999999999999999999999999999987531 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987632 13456799999998776 5999999988764431 1 122345678889999985432222211 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe---
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK--- 1062 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~--- 1062 (1433)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 6799999999999999999999999999999999999999999999985 4799999999975 4667899999996
Q ss_pred ----cCcEEEEEcCC
Q 000541 1063 ----RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ----~gG~~~y~G~~ 1073 (1433)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46999999985
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=321.06 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 469999999999999999999999999999999999986410 1389999999886421 123579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc----ccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV----CAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 317 (1433)
++.+||+||+.++....+.. .+. .....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVR---------NKK------------------------DLDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCC---------CHH------------------------HHHHHHHHHHHHcCCchhhhhHhh
Confidence 99999999998875432100 000 01123456788888842 233
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+ .+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++||.++|+..++.+++|
T Consensus 144 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 144 K-----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSD 215 (258)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCC
Confidence 3 3456999999999999999999999999999999999999999999999843 3 567779999999999999
Q ss_pred eEEEec------CCeEEEecChhHHH
Q 000541 398 DIILIS------DGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~------~G~iv~~G~~~~~~ 417 (1433)
+|++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.30 Aligned_cols=207 Identities=20% Similarity=0.336 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCCc-----ccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEFV-----PQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999998641 113899999999875321 23569999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc----ccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV----CAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 317 (1433)
++ +||+||+.|+....+.... . +....++.+++.+||.+ ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------K------------------------ELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCchhhhhHhh
Confidence 77 8999999987543221000 0 01112445777888742 233
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
. ..+.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ + ++|++++|+..++.+++|
T Consensus 143 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 143 K-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSD 214 (251)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcC
Confidence 3 3457999999999999999999999999999999999999999999999753 3 567778899999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=323.74 Aligned_cols=218 Identities=23% Similarity=0.392 Sum_probs=174.1
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 488999998773 12469999999999999999999999999999999999977 4689999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 915 KQETFARISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-LEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 915 ~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
.....++.++|++|++.+. ...+++|++.+....+.. ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997542 235789988653211000 01111223445778899999987777654 469999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999974 466778988665 4 8999999
Q ss_pred CCC
Q 000541 1072 SLG 1074 (1433)
Q Consensus 1072 ~~~ 1074 (1433)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=321.84 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=167.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998741 01389999999887531 123569999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++. ||+||+.|+.+..+... .+. +....++.+++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR--------SKA------------------------ELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc--------chH------------------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 774 99999998754322100 000 01123456788889864211111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+.+++.+++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEE
Confidence 223456999999999999999999999999999999999999999999999743 35677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=324.08 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=173.7
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--C-CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+.|++||+++|+|||||||||||++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998773 2359999999999999999999999999999999999743 1 12689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|++.+++. ||.||+.+....+. . .+....++.+.++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG-I-NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC-C-CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999888775 99999988654321 1 112223455677888888742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+.+|++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4667899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 899999885
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=319.65 Aligned_cols=210 Identities=20% Similarity=0.272 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcceEEEECCccCCCCc-----ccceEEEEcCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKL---DSSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQHDN 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l---~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 240 (1433)
+++|+|+|+++++|++++|+||||||||||+++|+|.. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 46999999999999999999999999999999999973 331 13899999999875421 2356999999987
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
.++ .||+||+.++.+..+.... ......++.+++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999987543211000 001123456788888864322111
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
+...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. . +++|+.++|+..++.+++|+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--K-DYTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhCCEEE
Confidence 23345799999999999999999999999999999999999999999999973 2 3667778999999999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000541 401 LISDGQIVYQGPREHVL 417 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~ 417 (1433)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=364.24 Aligned_cols=205 Identities=28% Similarity=0.408 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+..+ ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 45899999999999999999999999999999999999998 9999999999887654 46899999998666 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++.. . + ..++.+..+.+++ +..+ -.+++..||.+|+.+
T Consensus 542 TI~eNi~~~~~---~-~----~e~i~~al~~a~l------------------------~~~i--~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP---L-T----LDEAWEAARMAGL------------------------AEDI--RAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC---C-C----HHHHHHHHHHcCc------------------------HHHH--HhccccccccccCCC-
Confidence 99999998632 0 0 0111111111111 1111 136788899999876
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.+||||||||++|||||+.+|++++||||||+||+.+..++.+.|+++ ++ |+|+++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecCh-HHHHcCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999874 34 556577776 445679999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=318.49 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=173.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--C-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999998773 24699999999999999999999999999999999998752 1 3589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87532 124567999999988775 799999987643221 1112223355778888888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
....||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 2457999999999999999999999999999999999999999999999854 799999999975 4667799999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 899988875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=349.35 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCeEE
Q 000541 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1010 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~~~~~LSgGqrkRl~ia~~L~~---~p~il~ 1010 (1433)
.+||.|.+.|.+.+. . .....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888887765432 0 1123567888898653 3333 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe-----cCcEEEEEcCC
Q 000541 1011 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK-----RGGQEIYVGSL 1073 (1433)
Q Consensus 1011 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~-----~gG~~~y~G~~ 1073 (1433)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999874 457799999994 57999999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=318.19 Aligned_cols=211 Identities=21% Similarity=0.302 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 45999999999999999999999999999999999998641 12389999999987532 124569999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ .||+||+.++.+..+... + .+....++.+++.+||.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------K------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 77 699999998754221100 0 001123455788888864322222
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
++..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. . +++|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--K-NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--c-CCEEEEEecCHHHHHHhcCEEEE
Confidence 24456799999999999999999999999999999999999999999999874 2 46777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=350.97 Aligned_cols=220 Identities=22% Similarity=0.348 Sum_probs=180.7
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788888763 24699999999999999999999999999999999998764335899999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000541 916 QET----FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL-EVDSPTRKMFIEEVMELVELNPLR-QALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~-~~~vg~~~~~~LS 989 (1433)
... .++.+||++|++.+++.+||.|++.+....+... ....+..++.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2356899999998899999999998764332111 112233445678899999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999974 46677899999986 89999
Q ss_pred EcCCCc
Q 000541 1070 VGSLGR 1075 (1433)
Q Consensus 1070 ~G~~~~ 1075 (1433)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 988754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=318.27 Aligned_cols=212 Identities=22% Similarity=0.308 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999986 3111389999999887432 124579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||+||+.++.+..+... .. +....++.+++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------RS------------------------EADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 999999999987643211000 00 01123456788888854211111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++||+++|+.+++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999853 3 5777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.50 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCC--CCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 243 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 243 (1433)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC-ccccccccC
Q 000541 244 EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGD 322 (1433)
Q Consensus 244 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 322 (1433)
.+||.|++.+..+.... .... +....++.+++.+||+ +..++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LEPE------------------------QREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999886542100 0000 0112346689999994 5555544
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.++||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 3567777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=351.70 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=180.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998873 2459999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQE---T-FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
... . .++.+||++|++.+++.+||+|++.+... . ....++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 12458999999999999999999987531 0 1233456788999999987776654 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999974 46678999999985 899999
Q ss_pred cCCC
Q 000541 1071 GSLG 1074 (1433)
Q Consensus 1071 G~~~ 1074 (1433)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=325.23 Aligned_cols=235 Identities=28% Similarity=0.431 Sum_probs=188.9
Q ss_pred hcCCCCCceeEEeeceeEEEEEecCCCCCCCchhHHHHHHHhhhhhccccccccccceeeeceEEEEeCCeEEEEEcCCC
Q 000541 113 RVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPA 192 (1433)
Q Consensus 113 ~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 192 (1433)
++.++-|+-.+..|++++-- ...++++|+|+||.+.+|+.++|+||||
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~P--------------------------------Pg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAP--------------------------------PGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred CCCCCCCCceeeEeeeeecC--------------------------------CCCCCcceecceeEecCCceEEEECCCC
Confidence 45566677788888887621 1234679999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc---ceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhh
Q 000541 193 SGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSE 269 (1433)
Q Consensus 193 SGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 269 (1433)
||||||.++|.|..+|. +|.|.++|-+++.+.+. +.+||.||+-.+|+ -||.|||. |..
T Consensus 373 SGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~----------- 434 (580)
T COG4618 373 SGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG----------- 434 (580)
T ss_pred ccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc-----------
Confidence 99999999999999987 99999999999887764 78999999865554 69999995 211
Q ss_pred hhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhHhhHHHHHHHHhCCCcEe
Q 000541 270 LSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349 (1433)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~il 349 (1433)
++.|.+...+|+... ...|.+ +.|++.+||.||+.+. +||||||||+++||||+++|.++
T Consensus 435 -----------~~~d~~kIieAA~lA-----gvHelI---l~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 435 -----------EEADPEKVIEAARLA-----GVHELI---LRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred -----------ccCCHHHHHHHHHHc-----ChHHHH---HhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCcEE
Confidence 122333344443322 223333 4599999999998765 79999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecChhHHHHHH
Q 000541 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFF 420 (1433)
Q Consensus 350 llDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f 420 (1433)
+||||-|.||+.....+.+.+.+... . +.++|+++|. |.+...+|+|++|++|++-.+|+++|++...
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~-r-G~~vvviaHR-Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA-R-GGTVVVIAHR-PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH-c-CCEEEEEecC-HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999998643 3 4444446554 5788899999999999999999999998754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=315.55 Aligned_cols=202 Identities=25% Similarity=0.424 Sum_probs=170.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 252 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 252 (1433)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998754322 357999999998899999999998
Q ss_pred HHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCchhH
Q 000541 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQ 332 (1433)
Q Consensus 253 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 332 (1433)
++... ... ..+ .....++.+++.+||++..++.+. .|||||
T Consensus 94 ~~~~~-~~~--------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--------LNA-------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccC--------CCH-------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 000 000 011235668899999877776665 599999
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEEecC
Q 000541 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGP 412 (1433)
Q Consensus 333 rqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 412 (1433)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.+.. ++++++++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999986533 5667778999999999999999999999999999
Q ss_pred hhHHHH
Q 000541 413 REHVLE 418 (1433)
Q Consensus 413 ~~~~~~ 418 (1433)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=322.91 Aligned_cols=214 Identities=22% Similarity=0.291 Sum_probs=173.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 911 (1433)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998773 24699999999999999999999999999999999998652 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc----cccccccC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP----LRQALVGL 982 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~vg~ 982 (1433)
.++.. ...++.++|++|+..+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999987654331 111 23455788899998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
...||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999975 4566789976543
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
++|+++..|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 35899998874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=320.94 Aligned_cols=224 Identities=24% Similarity=0.318 Sum_probs=178.5
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67889988774100 000 0012569999999999999999999999999999999999876 46999999998754
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 QE------TFARISGYCEQND--IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
.. ..++.++|++|+. .+.+..|+.|++.+..... ...........++++++.+++. ...+.. ..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2356799999997 3567899999997643211 1122334445688999999996 455544 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999975 46668999999985 8
Q ss_pred EEEEEcCCC
Q 000541 1066 QEIYVGSLG 1074 (1433)
Q Consensus 1066 ~~~y~G~~~ 1074 (1433)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999999864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=321.09 Aligned_cols=210 Identities=24% Similarity=0.394 Sum_probs=162.1
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357788877631 12358999999999999999999999999999999999986 46899999998653
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCC
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM-----FIEEVMELV--ELNPLRQALVGLPGV 985 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l--~l~~~~~~~vg~~~~ 985 (1433)
. ..+++.++|++|++.+++ .||.||+.+... ......... ..+++++.+ ++....+. ..
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234567999999987664 699999976421 111111100 112223333 22222222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+ +.+|++++|.+ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999864 899999999975 34 56999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=313.19 Aligned_cols=192 Identities=27% Similarity=0.357 Sum_probs=158.7
Q ss_pred cceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000541 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 859 ~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 34679999999999999999999999999999999999876 568999999975421 1112334577999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
+||+.+....+. .+....++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987654321 122334456788899999987777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEc
Q 000541 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G 1071 (1433)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998877899999999974 45667899999985 8888765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=358.77 Aligned_cols=209 Identities=24% Similarity=0.403 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45999999999999999999999999999999999999998 9999999999876653 467999999987665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++.... . + .+++....+.++ .+..++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~~-~-~----~~~i~~al~~~~------------------------l~~~i~--~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTEQ-Y-S----REQIEEAARMAY------------------------AMDFIN--KMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCCC-C-C----HHHHHHHHHHhC------------------------cHHHHH--hcccccCceeCCCC-
Confidence 9999998852100 0 0 011111111110 011111 27788899999875
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+.||||||||++|||||+.+|++++||||||+||+.+...+.+.|++.. .+.|+|.++|+. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~---~~~tvI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ---KNRTSLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEecch-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999998863 245555577776 556779999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=316.55 Aligned_cols=218 Identities=24% Similarity=0.329 Sum_probs=172.4
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--CC-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 378999998763 2469999999999999999999999999999999999753 21 2489999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~ 985 (1433)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ......++.+.+.++.+++.. +.+... ...
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~--~~~ 146 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH--ESA 146 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh--cCc
Confidence 87632 234567999999988887 6999999876543211 111222344566777777642 111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+.+|++++|.+ |
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G 223 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-G 223 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999866 589999999975 46678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 224 ~i~~~~~~ 231 (252)
T PRK14255 224 NLIEFADT 231 (252)
T ss_pred EEEEeCCH
Confidence 99998875
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.53 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 458999999999999999999999999999999999986 3212389999999987431 123569999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++. ||+||+.|+.+..+... +. +....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN---------KK------------------------KLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhhhh-
Confidence 775 99999988643321100 00 01112445677888753211111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. +.+++.++|+.+++.+++|++++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999999742 45677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=316.38 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531123899999999876532 2356999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
||+||+.++...++.... . ......++.+++.+||........ ++..
T Consensus 94 tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999986543211000 0 001122456788889853211111 2344
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++.+++|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 57999999999999999999999999999999999999999999998742 467777999999999999999999999
Q ss_pred eEEEecChhHHH
Q 000541 406 QIVYQGPREHVL 417 (1433)
Q Consensus 406 ~iv~~G~~~~~~ 417 (1433)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=301.53 Aligned_cols=168 Identities=30% Similarity=0.441 Sum_probs=148.6
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5678877663 1359999999999999999999999999999999999876 458999999987543
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 917 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 917 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
..+++.++|++|++.+++..|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999872 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.+|++++|.+|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999975 566688999999863
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=310.07 Aligned_cols=197 Identities=29% Similarity=0.378 Sum_probs=164.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888887763 2469999999999999999999999999999999999876 46899999998653
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000541 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995 (1433)
Q Consensus 916 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkR 995 (1433)
....++.++|++|++.+++..||.|++.+....+. . ..+.++++++.+++.+..+... ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888889999999987553321 1 1234788999999987665543 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 996 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. .... |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--~~~~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL--GLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch--hhcc-CcEEeec
Confidence 99999999999999999999999999999999999998878999999999974 3344 8877664
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.96 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=169.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 488999998763 2469999999999999999999999999999999999876 5689999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~~LSg 990 (1433)
.. ..+++.++|++|++.+++ .||+||+.+....+.. ...++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ-----QPDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC-----ChHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988776 4999999875443211 11234567899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|+++. + +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 8999999999753 4 56999999965444443
Q ss_pred Ec
Q 000541 1070 VG 1071 (1433)
Q Consensus 1070 ~G 1071 (1433)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=310.21 Aligned_cols=197 Identities=27% Similarity=0.418 Sum_probs=163.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHD 239 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d 239 (1433)
+++.+ |+|+++++ |+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 34444 99999999 999999999999999999999999987 999999998764211 235799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccc
Q 000541 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTM 319 (1433)
Q Consensus 240 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 319 (1433)
.+++.+||+||+.+..... . .. .....++.+++.+||++..+..
T Consensus 85 ~~~~~~t~~~~l~~~~~~~---~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~ 128 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK---R---------NR------------------------EDRISVDELLDLLGLDHLLNRY 128 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC---C---------HH------------------------HHHHHHHHHHHHcCCHhHhhcC
Confidence 8888999999998764210 0 00 0012245678899998766655
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++++. .+++|++++|+.+++.+++|++
T Consensus 129 ~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 129 PA-----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEE
Confidence 54 69999999999999999999999999999999999999999999998653 2566777999999999999999
Q ss_pred EEecCCeEEEec
Q 000541 400 ILISDGQIVYQG 411 (1433)
Q Consensus 400 ilL~~G~iv~~G 411 (1433)
++|++|+++.+|
T Consensus 203 ~~l~~G~i~~~g 214 (214)
T cd03297 203 VVMEDGRLQYIG 214 (214)
T ss_pred EEEECCEEEecC
Confidence 999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=318.11 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCcc-----CCCCcc-------cceEEEEc
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD-----MDEFVP-------QRTAAYIS 236 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 236 (1433)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 46999999999999999999999999999999999999987 9999999987 554322 23599999
Q ss_pred CCC--CCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc
Q 000541 237 QHD--NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV 314 (1433)
Q Consensus 237 Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 314 (1433)
|++ .+.+.+|++||+.+.....+.. +. .+....++.+++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------~~-----------~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR----------------------HY-----------GDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC----------------------cH-----------HHHHHHHHHHHHHcCCCh
Confidence 996 3577889999997643211000 00 001123456888999964
Q ss_pred -cccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 000541 315 -CADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393 (1433)
Q Consensus 315 -~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 393 (1433)
..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+. .+.+|+.++|+..++.
T Consensus 143 ~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 455544 469999999999999999999999999999999999999999999987653 3567777999999999
Q ss_pred hhcCeEEEecCCeEEEecChhHHH
Q 000541 394 DLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 394 ~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
+++|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=366.12 Aligned_cols=209 Identities=29% Similarity=0.400 Sum_probs=176.9
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+||+|+|+. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 36999999999841 12469999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+++ ..+++.+|||+|++.+++ -|++||+.+.. | .+ ++.+.++++..++.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 457788999999998875 59999998642 1 12 2345677777777643 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999886 589999999974 5778999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=306.78 Aligned_cols=178 Identities=26% Similarity=0.349 Sum_probs=150.1
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc-----ccccceEEEeccCCC-CCC
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-----ETFARISGYCEQNDI-HSP 934 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~-~~~ 934 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999877 458999999987531 123567899999973 334
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000541 935 NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014 (1433)
Q Consensus 935 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEP 1014 (1433)
..||+||+.+..... ..+..+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865432 1223334456788999999987766653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000541 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1048 (1433)
Q Consensus 1015 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~ 1048 (1433)
|+|||+.++..+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=298.24 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=189.6
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcccceEEEEcCCCCC
Q 000541 162 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNH 241 (1433)
Q Consensus 162 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~ 241 (1433)
..++.+++.+++|+|+.++||+|++++|||||||||.+++|.|++.|+ +|+|+++|.+++... ...|||.|++.-+
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGL 83 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGL 83 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhcc
Confidence 456677889999999999999999999999999999999999999998 999999999886543 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++.+||.|.|.|-++++|... ++.....++.|+.+++......+|
T Consensus 84 y~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kI- 128 (300)
T COG4152 84 YPKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKI- 128 (300)
T ss_pred CccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchH-
Confidence 999999999999999987521 112334577899999987776555
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
..||-|.+|++.+-.+++.+|++++||||+|||||-++..+-+.+.++.. .++|||..+|.++.+.++||++++
T Consensus 129 ----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 129 ----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred ----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhhe
Confidence 46999999999999999999999999999999999999999999998854 478888899999999999999999
Q ss_pred ecCCeEEEecChhHHHHHH
Q 000541 402 ISDGQIVYQGPREHVLEFF 420 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~~~f 420 (1433)
|++|+.|.+|+.+++..-|
T Consensus 203 L~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 203 LKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred ecCCceEEeccHHHHHHhc
Confidence 9999999999999998754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=356.38 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 246 (1433)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999998 9999999999876654 4789999999977765 9
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
++|||.++.. . + ..++.+..+.+++ +..++ .|++..||.+|+.+.
T Consensus 431 i~~NI~~~~~---~-~----d~~i~~a~~~~gl------------------------~~~i~--~lp~Gldt~i~e~g~- 475 (592)
T PRK10790 431 FLANVTLGRD---I-S----EEQVWQALETVQL------------------------AELAR--SLPDGLYTPLGEQGN- 475 (592)
T ss_pred HHHHHHhCCC---C-C----HHHHHHHHHHcCc------------------------HHHHH--hccccccccccCCCC-
Confidence 9999998631 0 0 0111111111110 11111 267788999998654
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.||||||||++|||||+.+|+|++||||||+||+.+..+|.+.|+++.. + .|+|.++|.. +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~-~tvIivtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--H-TTLVVIAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEecch-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998642 3 4555567765 4566799999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=349.52 Aligned_cols=217 Identities=28% Similarity=0.330 Sum_probs=179.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899998773 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 915 KQ----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 915 ~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
.. ..+++.+||++|++.+++.+||.||+.+....+.....+..+.++.++++++.+++.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123467999999998899999999998753211111112333445688899999997666654 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~ 1070 (1433)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|++++|.+ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999888999999999975 46677899999985 788876
Q ss_pred cCC
Q 000541 1071 GSL 1073 (1433)
Q Consensus 1071 G~~ 1073 (1433)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 653
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=315.92 Aligned_cols=220 Identities=23% Similarity=0.302 Sum_probs=174.0
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999988763 2359999999999999999999999999999999999731125689999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhcCC----CCCChhHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000541 915 KQE---TFAR-ISGYCEQNDIHSPNVTVYESLLYSAWLRLP----LEVDSPTRKMFIEEVMELVELN-PLRQALVGLPGV 985 (1433)
Q Consensus 915 ~~~---~~~~-~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~----~~~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~ 985 (1433)
... ...+ .++|++|++.+++.+|+.|++.+....... .+....+..+.++++++.+++. ...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999999775432110 0111122335567888999986 34444321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hcceeEEecC
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEA-FDELFLLKRG 1064 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~-fd~~~ll~~g 1064 (1433)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++. +... +|++++|.+
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2599999999999999999999999999999999999999999999998779999999999652 3344 799999975
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999986
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=309.09 Aligned_cols=199 Identities=22% Similarity=0.342 Sum_probs=166.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-ccceEEEEcCCCCCCCCCCHHH
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 249 (1433)
Q Consensus 171 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 249 (1433)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875432 2457999999998999999999
Q ss_pred HHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCCCc
Q 000541 250 TLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329 (1433)
Q Consensus 250 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 329 (1433)
|+.+..... ... .. .....++.+++.+||++..++.+. .||
T Consensus 90 n~~~~~~~~-~~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKL--------NA-------------------------EQQEKVVDAAQQVGIADYLDRLPE-----QLS 130 (213)
T ss_pred HHHhHhhcc-CCc--------cH-------------------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCC
Confidence 998753210 000 00 011234568899999876666554 699
Q ss_pred hhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCeEEE
Q 000541 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409 (1433)
Q Consensus 330 GGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 409 (1433)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+. .+++|++++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998643 35677779999999999999999999999998
Q ss_pred ecC
Q 000541 410 QGP 412 (1433)
Q Consensus 410 ~G~ 412 (1433)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=317.60 Aligned_cols=211 Identities=21% Similarity=0.343 Sum_probs=166.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++..
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 359999999999999999999999999999999999853 4222389999999887431 124579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ +||+||+.++....+.... + .....++.+++.+|+.....+..
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK-----Q----------------------------VLDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCchhHHHHH-
Confidence 76 8999999987543221000 0 01112345677777743211111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
++..+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+.+|+|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999998743 3 6777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 220 FLDGDLIEYNDTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=360.81 Aligned_cols=211 Identities=30% Similarity=0.464 Sum_probs=176.4
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+|++|.++. ++.+|+|+|+.++|||.+||+||||||||||++.|.|..+ +.+|+|.+||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 45999999999852 3469999999999999999999999999999999999987 469999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcC-------CcccccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE-------LNPLRQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-------l~~~~~~~vg~~ 983 (1433)
+++ ..+++.++||+|+..++. -||+||+.++. | +.+++ .++++++..+ +.+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATDE----EIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhChHHHHHhCcccccceecCC
Confidence 654 457788999999998887 79999998862 1 12222 2333333332 233468888844
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++||||+++||+||+||||||+||+.+...|++.++++. +|+|+|+++|+++ ....+|++++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999877 5789999999985 4556999999996
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 899999986
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=313.84 Aligned_cols=209 Identities=27% Similarity=0.420 Sum_probs=168.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++. ..+.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 678888876631 12359999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG------LPGVS 986 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg------~~~~~ 986 (1433)
. ...++.++|++|++.+++ .||.|++.+... . .. +..++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~--~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----L--AD---DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----C--CC---HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223567999999987776 699999976421 1 11 2235677888888776655421 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. ..+.+|++++|.+ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999975 3478999999985 78
Q ss_pred EEEEc
Q 000541 1067 EIYVG 1071 (1433)
Q Consensus 1067 ~~y~G 1071 (1433)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 87654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=364.76 Aligned_cols=206 Identities=26% Similarity=0.378 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 45899999999999999999999999999999999999998 9999999999876653 57899999998666 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++..- . + ..++.+..+.+++ +..+ -.++...||.+|+.+
T Consensus 568 Ti~eNi~l~~~~--~-~----~~~i~~al~~~~l------------------------~~~i--~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWDPT--I-P----DADLVRACKDAAI------------------------HDVI--TSRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCCCC--C-C----HHHHHHHHHHhCC------------------------HHHH--HhCcCcccceeccCC-
Confidence 999999875210 0 0 0111111111110 1111 137778899999876
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.+||||||||++||||++.+|++++||||||+||+.+..++.+.|++ . +.|+|.++|..+. ...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~-~~T~IiitHrl~~-i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----R-GCTCIIVAHRLST-IRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----c-CCEEEEEecCHHH-HHhCCEEEEEeCC
Confidence 47999999999999999999999999999999999999999999975 2 3455557777654 4669999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++.+|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=294.34 Aligned_cols=214 Identities=27% Similarity=0.425 Sum_probs=185.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++.+|+++++ +.+.+|+|+|..|++|.+++|+|||||||||||.+.+++.+ ..+|+|+++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecc
Confidence 4566777665 35689999999999999999999999999999999998876 56999999999865
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCC--hhHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVD--SPTRKMFIEEVMELVELNPLRQALVGLPGVSGLST 990 (1433)
Q Consensus 916 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~--~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSg 990 (1433)
. ..+++.++..-|+......+||+|-+.|+ |.|.+.. .++.+..+++.++.++|++++|+.. ..|||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSG 138 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSG 138 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhccc
Confidence 3 35667788889988888899999999987 5665432 2455667999999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecCcEEEE
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y 1069 (1433)
|||||.-||+.|+++.+.++||||.++||...+..+|+.||+++++ |+|||++.||.+. .-...|.++.|++ |+++.
T Consensus 139 GQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~ 216 (252)
T COG4604 139 GQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVK 216 (252)
T ss_pred chhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEe
Confidence 9999999999999999999999999999999999999999999977 9999999998663 3345699999985 89999
Q ss_pred EcCCC
Q 000541 1070 VGSLG 1074 (1433)
Q Consensus 1070 ~G~~~ 1074 (1433)
.|++.
T Consensus 217 ~G~~~ 221 (252)
T COG4604 217 QGSPD 221 (252)
T ss_pred cCCHH
Confidence 99974
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=320.06 Aligned_cols=218 Identities=22% Similarity=0.258 Sum_probs=172.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--C-CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 911 (1433)
.+.++|+++.++ ++.+|+|+|+++++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998773 1358999999999999999999999999999999999864 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGV 985 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~ 985 (1433)
.+... ..+++.++|++|++.+++ .||+||+.+....+. . .+....++.+.++++.+++.. +.+.+. ...
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG-I-KDKKTLDEIVEKSLRGAAIWDELKDRLH--DNA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHHcCCcchHHHHHh--cCc
Confidence 87632 234567999999988777 499999988653321 1 111222344567777765431 211111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.+ |
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-G 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 799999999975 45678999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++..|+.
T Consensus 243 ~i~~~g~~ 250 (271)
T PRK14238 243 YVNEYDDT 250 (271)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=317.18 Aligned_cols=215 Identities=25% Similarity=0.287 Sum_probs=172.6
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc-
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP- 913 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 913 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378899988763 2358999999999999999999999999999999999987 468999999976
Q ss_pred ----CCcc-------cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-ccccc
Q 000541 914 ----KKQE-------TFARISGYCEQNDI--HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQAL 979 (1433)
Q Consensus 914 ----~~~~-------~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~ 979 (1433)
.... ..++.++|++|++. ..+.+|+.|++.+.... ... .......+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IGA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 12346899999874 45668999998654221 111 011233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcce
Q 000541 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDEL 1058 (1433)
Q Consensus 980 vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~ 1058 (1433)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999974 456678999
Q ss_pred eEEecCcEEEEEcCC
Q 000541 1059 FLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1059 ~ll~~gG~~~y~G~~ 1073 (1433)
++|.+ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 899998875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=319.20 Aligned_cols=219 Identities=18% Similarity=0.227 Sum_probs=173.9
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 910 (1433)
.-+.++|+++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3589999998773 236999999999999999999999999999999999986421 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCC
Q 000541 911 GYPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGV 985 (1433)
Q Consensus 911 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~ 985 (1433)
|.++.. ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++......... ...
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCc
Confidence 987532 2345679999999887765 99999987643321 11 1223445677787776421111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe---
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK--- 1062 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~--- 1062 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~ 237 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEI 237 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999865 799999999975 5778899999997
Q ss_pred -----cCcEEEEEcCC
Q 000541 1063 -----RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 -----~gG~~~y~G~~ 1073 (1433)
+.|++++.|+.
T Consensus 238 ~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 238 DEYGKRRGKLVEFSPT 253 (274)
T ss_pred ccccccCceEEEeCCH
Confidence 25899999986
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=320.40 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=172.3
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++. +...+|+|+|+.|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988741 12358999999999999999999999999999999999875 379999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL------PGV 985 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~------~~~ 985 (1433)
.. ...++.++|++|++.+++ .|++||+.... + .. .+.+.++++.++|.+..+...+. .+.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~----~--~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG----K--WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc----C--CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 245677999999998887 49999995321 0 11 23456778888887655554321 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. .++|||+++|+++ ....+|++++|.+ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999974 4456999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
+++++|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=349.20 Aligned_cols=206 Identities=26% Similarity=0.323 Sum_probs=172.7
Q ss_pred eeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCCCCCCCC
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQNDIHSPNV 936 (1433)
Q Consensus 861 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~l 936 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999876 4589999999876421 2345799999998888999
Q ss_pred CHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000541 937 TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016 (1433)
Q Consensus 937 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTs 1016 (1433)
||+|++.+..........+.....+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111122333456888999999987666653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCCCc
Q 000541 1017 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR 1075 (1433)
Q Consensus 1017 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~~~ 1075 (1433)
|||+.++..+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999974 46677899999985 89999998643
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=322.36 Aligned_cols=209 Identities=27% Similarity=0.434 Sum_probs=172.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc---ccceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 244 (1433)
++++|+||||++.||+.++++||||+||||++++|-...+-+ +|.|+++|+++.... .++.||.||||..+| +
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLF-N 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLF-N 625 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceee-c
Confidence 467999999999999999999999999999999999999877 999999999986543 356899999987666 4
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 324 (1433)
-|+-.||.|+.. +..-|+..+|+ ++..+.| +++++++..+|+||+++
T Consensus 626 dTI~yNIryak~-------------------------~AsneevyaAA-----kAA~IHd---rIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 626 DTILYNIRYAKP-------------------------SASNEEVYAAA-----KAAQIHD---RILQFPEGYNTRVGERG 672 (790)
T ss_pred ceeeeheeecCC-------------------------CCChHHHHHHH-----HHhhHHH---HHhcCchhhhhhhhhcc
Confidence 599999988631 11111111111 1222334 35679999999999999
Q ss_pred cCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecC
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 404 (1433)
.+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|+ +.|..+ +.--+|.|+++++
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV-vAHRLS-TivnAD~ILvi~~ 747 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV-VAHRLS-TIVNADLILVISN 747 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE-Eeeeeh-heecccEEEEEeC
Confidence 97 999999999999999999999999999999999999999999999875 577777 445443 3346899999999
Q ss_pred CeEEEecChhHHHH
Q 000541 405 GQIVYQGPREHVLE 418 (1433)
Q Consensus 405 G~iv~~G~~~~~~~ 418 (1433)
|+|++.|.++|+..
T Consensus 748 G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 748 GRIVERGRHEELLK 761 (790)
T ss_pred CeEeecCcHHHHHh
Confidence 99999999999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=315.44 Aligned_cols=208 Identities=18% Similarity=0.275 Sum_probs=163.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcceEEEECCccCCCCc-----ccceEEEEcCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-----SSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQH 238 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 238 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+ +|+|.++|+++.... .++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 359999999999999999999999999999999999864 34 899999998875321 23569999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
+.+++. ||+||+.++....+... .. .....++..++.+|+.+....
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR---------KS------------------------VLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCCCcchHH
Confidence 877774 99999998643211000 00 001123445677777421101
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.. ++.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+.+++.+++|+
T Consensus 157 ~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 157 RL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCCE
Confidence 11 233456999999999999999999999999999999999999999999999743 35677789999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000541 399 IILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~ 417 (1433)
|++|++|++++.|+.+++.
T Consensus 233 v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 233 TAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=351.64 Aligned_cols=212 Identities=29% Similarity=0.429 Sum_probs=175.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|++|.++. +++.+|+|+|+.++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 46999999998841 12459999999999999999999999999999999999987 468999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+++ ..+++.++||+|++.+++ .|++||+.+.. | +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 456788999999987775 59999997631 1 122 2334555666665433 35566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|+|+++|+++ ....+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999984 5899999999975 4567999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=328.82 Aligned_cols=202 Identities=26% Similarity=0.411 Sum_probs=168.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 244 (1433)
+.++|+|+|+++++||.++|+|++|||||||++.|+|-++|+ +|+|+.||.++.+... ++.++.++|.. |+..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRV-HLFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccch-HHHH
Confidence 346999999999999999999999999999999999999998 9999999999877655 46789999976 6667
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhC-------CCcccc
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILG-------LDVCAD 317 (1433)
Q Consensus 245 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-------L~~~~d 317 (1433)
-|+|+||..+.. +...++. -.+++..| .++..|
T Consensus 426 ~Tlr~NL~lA~~-------------------------~AsDEel---------------~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANP-------------------------DASDEEL---------------WAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCC-------------------------CCCHHHH---------------HHHHHHcCHHHHHHhChhhhh
Confidence 799999998632 1111111 11233333 455778
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
|.+|+.+. .||||||||++|||+|+.++++++|||||.|||+.|..++++.+.+-+ +++|++.++|+...+ +.||
T Consensus 466 t~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~l-e~~d 540 (573)
T COG4987 466 TWLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRGL-ERMD 540 (573)
T ss_pred chhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEecccccH-hhcC
Confidence 89997655 699999999999999999999999999999999999999999998743 466777788887665 5789
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000541 398 DIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~~ 418 (1433)
+|++|++|+++++|.+.++..
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=317.81 Aligned_cols=218 Identities=19% Similarity=0.246 Sum_probs=172.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC--C-eeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 911 (1433)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999998773 23699999999999999999999999999999999997542 1 2589999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKK-----QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++. ...+++.++|++|++.+++ .||.||+.+....+. .. ...++.++++++.+++.+..+.... ....
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567999999988777 499999987653321 11 1223456677777777431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec---
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR--- 1063 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~--- 1063 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999975 57788999999982
Q ss_pred -----CcEEEEEcCC
Q 000541 1064 -----GGQEIYVGSL 1073 (1433)
Q Consensus 1064 -----gG~~~y~G~~ 1073 (1433)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999885
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=315.48 Aligned_cols=211 Identities=22% Similarity=0.354 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 46999999999999999999999999999999999998741 11389999999887532 123579999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ +||+||+.++....+.... . .....++..++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------H------------------------KLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------H------------------------HHHHHHHHHHHHcCCCchhHHH-H
Confidence 77 8999999986542211000 0 0111234567777775321111 1
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.+ +++++.++|+.+++.+++|++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEEE
Confidence 334557999999999999999999999999999999999999999999999743 35777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=358.64 Aligned_cols=210 Identities=22% Similarity=0.361 Sum_probs=178.0
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|++|.++. ++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 46999999998841 1359999999999999999999999999999999999987 458999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR-------QALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~vg~~ 983 (1433)
+++ ..+++.++||+|++.+++. |++||+.++. + .+ ++.++++++.+|+.+.- |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~--~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR----D--IS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4567889999999998876 9999998752 1 12 23467778888876433 4556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|+++|++ +....+|++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 69999999997 45678999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999985
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.63 Aligned_cols=206 Identities=23% Similarity=0.286 Sum_probs=167.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcceEEEECCccCCCCcc-cceEEEEcCCCC--CCCCC
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYNGHDMDEFVP-QRTAAYISQHDN--HIGEM 245 (1433)
Q Consensus 170 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 245 (1433)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999998710 028999999988754322 256999999974 44668
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc---cccccccC
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV---CADTMVGD 322 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~vg~ 322 (1433)
|+.+++.+.++..+.. . ....++.+++.+||.+ ..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-- 138 (254)
T PRK10418 97 TMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAARVLKLYP-- 138 (254)
T ss_pred cHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChhhhhhcCC--
Confidence 9999987644321110 0 0022456788899975 234443
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|
T Consensus 139 ---~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 139 ---FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 3567777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=352.68 Aligned_cols=201 Identities=27% Similarity=0.437 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35899999999999999999999999999999999999998 9999999999877654 467999999986664 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCC------Ccccccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL------DVCADTM 319 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL------~~~~dt~ 319 (1433)
|++||+.++... .+.+. ++.+++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~~-------------------------~~~~~---------------i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAPN-------------------------ASDEA---------------LIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCCc-------------------------cCHHH---------------HHHHHHHcCCHHHHcCccccCch
Confidence 999999886310 00000 1112222222 6678999
Q ss_pred ccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 000541 320 VGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 320 vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 399 (1433)
||+.+. .||||||||++|||+++.+|++++|||||++||+.+...+.+.|++.. . ++|++.++|..+.+ ..+|+|
T Consensus 469 vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~-~~tviiitHr~~~~-~~~d~i 543 (574)
T PRK11160 469 LGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--Q-NKTVLMITHRLTGL-EQFDRI 543 (574)
T ss_pred hcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecChhHH-HhCCEE
Confidence 998654 699999999999999999999999999999999999999999999863 2 44555577776555 569999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000541 400 ILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 400 ilL~~G~iv~~G~~~~~~~ 418 (1433)
++|++|++++.|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998864
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=351.86 Aligned_cols=206 Identities=30% Similarity=0.451 Sum_probs=182.6
Q ss_pred eeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCcc----cccceEEEeccCCCCCCCCCH
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQE----TFARISGYCEQNDIHSPNVTV 938 (1433)
Q Consensus 863 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~lTv 938 (1433)
+++++|+.|++||+.|++|+|||||||++++|+|..+ +.+|+++++|+++... ..++.+|||||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 8999999999999999999999999999999999887 5699999999987531 256779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000541 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1018 (1433)
Q Consensus 939 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgL 1018 (1433)
||+|.+.|++|. .+..+.++.++++++.++|.+.+++.++ .+|||+|||+++|.+|+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999999984 3334556669999999999999998854 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-HhcceeEEecCcEEEEEcCCCcChhHHHHHHh
Q 000541 1019 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVE-AFDELFLLKRGGQEIYVGSLGRHSSHLIKYFE 1085 (1433)
Q Consensus 1019 D~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~-~fd~~~ll~~gG~~~y~G~~~~~~~~~~~yF~ 1085 (1433)
||.+++.+++.++++.++|+.||.|+|. ++.+| +|||+.+|.+ |+....|+. +++...|.
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHs--MeE~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG 790 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHS--MEEAEALCTRTAIMVI-GQLRCIGSP----QELKSRYG 790 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHHHhhhhheeec-CeeEEecCh----HHHHhhcC
Confidence 9999999999999999888899999995 55554 5899999986 899999997 45665554
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=315.16 Aligned_cols=219 Identities=23% Similarity=0.307 Sum_probs=172.8
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC----eeeeEEEEc
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YISGSIMIS 910 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~----~~~G~I~i~ 910 (1433)
.+.++|++++++ ++.+|+|+|+.+.+||+++|+|+||||||||+++|+|...+. .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378899988763 346999999999999999999999999999999999987632 122555555
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccc-cccccCCCCC
Q 000541 911 GYPKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR-QALVGLPGVS 986 (1433)
Q Consensus 911 G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~~vg~~~~~ 986 (1433)
|.+... ...++.++|++|++.+++.+|++||+.+...... .....+..+.++++++.+++.+.. +.... ...
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~ 152 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS--PAS 152 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC--Ccc
Confidence 554421 2345679999999999999999999988643321 112233445678889999986321 11111 235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||+|||||++||++|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.+ |+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999975 45678999999985 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 230 i~~~g~~ 236 (257)
T PRK14246 230 LVEWGSS 236 (257)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=315.37 Aligned_cols=211 Identities=22% Similarity=0.362 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDS--SLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 3589999999999999999999999999999999998753 112389999999987531 124569999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ +||+||+.++....+.... . .....++.+++.+++.+......
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK---------K------------------------KLDEIVEKSLKGAALWDEVKDRL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhHHHH-
Confidence 77 8999999987543221000 0 01122344566777642111111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. . +++|+.++|+.+++.+++|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~v~~ 217 (250)
T PRK14240 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--K-DYTIVIVTHNMQQASRISDKTAF 217 (250)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEEeCHHHHHhhCCEEEE
Confidence 22345699999999999999999999999999999999999999999999874 2 45677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 218 FLNGEIVEFGDTVDLF 233 (250)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=319.58 Aligned_cols=210 Identities=22% Similarity=0.332 Sum_probs=164.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 359999999999999999999999999999999999986310 1389999999876421 123569999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ .||+||+.+++...+.. .+ ....++.+++.+++....+...
T Consensus 106 ~~-~tv~enl~~~~~~~~~~------~~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT------GD-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc------HH-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 87 59999999876432210 00 0012334566666642111111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+||.++|+..++.++||++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEE
Confidence 233457999999999999999999999999999999999999999999998742 36777799999999999999999
Q ss_pred ecC-----------CeEEEecChhHHHH
Q 000541 402 ISD-----------GQIVYQGPREHVLE 418 (1433)
Q Consensus 402 L~~-----------G~iv~~G~~~~~~~ 418 (1433)
|++ |++++.|+++++.+
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999988753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=357.63 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=177.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|++|+++. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 36999999998842 12469999999999999999999999999999999999987 568999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
.++ ..+++.++|++|++.+++ -|++||+.++. +.+.+ ++.++++++..++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 456788999999988876 59999997641 21122 2345666777665442 36667754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999875 4799999999974 5788999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=355.25 Aligned_cols=212 Identities=27% Similarity=0.423 Sum_probs=178.5
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999998841 12359999999999999999999999999999999999987 568999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR------QALVGLPG 984 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~------~~~vg~~~ 984 (1433)
+++ ..+++.++||+|++.+++ -|++||+.++. | +. .++.++++++..++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 356778999999988776 59999998752 1 11 234467788888887643 4556554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
...||||||||++|||+|+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999985 5899999999985 4567999999985
Q ss_pred cEEEEEcCC
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899999874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=314.96 Aligned_cols=208 Identities=25% Similarity=0.356 Sum_probs=166.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 123569999999989
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
++.+|++||+.++....+...+. +.....+..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDRD---------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCHH---------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 99999999998765322110000 0011123345555543 2334
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+. ++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ ++++++++|+..++.+++|
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCC
Confidence 44 446999999999999999999999999999999999999999999998742 3677778999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988874
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=314.88 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=174.2
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCC--C-CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 911 (1433)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367889988763 2469999999999999999999999999999999999753 1 12689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++.+.++++.+++.+........ ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87642 1345679999999888875 99999987643221 112233445677888888885421111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999975 56777888888875 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=315.46 Aligned_cols=212 Identities=20% Similarity=0.312 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCCc-----ccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEFV-----PQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ ++...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21123899999998764321 24579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++. ||+||+.++....+.... . ......++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------K------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------H------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 999999886432211000 0 001122456788899865322222
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. . +.+|++++|+..++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 23345799999999999999999999999999999999999999999999873 2 46777799999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=316.47 Aligned_cols=212 Identities=21% Similarity=0.290 Sum_probs=169.6
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCC
Q 000541 166 KKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQH 238 (1433)
Q Consensus 166 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 238 (1433)
++++.+|+|+|++++|||+++|+||||||||||+++|+|.++|. ...+|+|.++|+++... ..++.++|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 34567999999999999999999999999999999999999761 01389999999987431 123569999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
+..+ .+|++||+.++....+. . . +....++.+++.+||.+..+.
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~--~----~-----------------------------~~~~~~~~~l~~~~l~~~i~~ 141 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRY--K----G-----------------------------DLGDRVKHALQGAALWDEVKD 141 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCc--h----H-----------------------------HHHHHHHHHHHHcCCchhhhh
Confidence 8766 69999999987543210 0 0 001224557788887543322
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.. +...+.||||||||++|||||+.+|++++|||||+|||+.++.++.+.|+++. . +++++.++|+..++.+++|+
T Consensus 142 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 142 KL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--K-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHHhCCE
Confidence 22 23456799999999999999999999999999999999999999999999874 2 46777799999999999999
Q ss_pred EEEec--------CCeEEEecChhHHH
Q 000541 399 IILIS--------DGQIVYQGPREHVL 417 (1433)
Q Consensus 399 vilL~--------~G~iv~~G~~~~~~ 417 (1433)
|++|+ +|++++.|+.+++.
T Consensus 218 v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 218 TAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEEecccccccCCceEEEeCCHHHHH
Confidence 99996 89999999988764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=315.05 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=167.0
Q ss_pred eeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHH
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 939 (1433)
Q Consensus 863 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 939 (1433)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ . +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 3 8999999987643 22345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCeEEEe
Q 000541 940 ESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1012 (1433)
Q Consensus 940 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrkRl~ia~~L~~-------~p~il~LD 1012 (1433)
||+.+.... ..+.....+.++++++.+++.+..+.. ...||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678899999998766654 35799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcEEEEEcCC
Q 000541 1013 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1013 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~~~y~G~~ 1073 (1433)
|||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999975 46788999999985 899999875
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.98 Aligned_cols=209 Identities=26% Similarity=0.344 Sum_probs=163.5
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 56788776631 11358999999999999999999999999999999999987 468999999986532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000541 917 ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM-----FIEEVMELV--ELNPLRQALVGLPGVS 986 (1433)
Q Consensus 917 ---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l--~l~~~~~~~vg~~~~~ 986 (1433)
...++.++|++|+..+++ .||+||+.+.... .......+ ..++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999987776 6999999765321 11111111 123444444 444333332 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ |+|||+++|++. ++ +.+|++++|.+ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 7999999999999999999999999999999999999999999999864 899999999975 34 45999999986 78
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
++..|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 9888874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=322.46 Aligned_cols=207 Identities=20% Similarity=0.359 Sum_probs=164.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
..+|+|+|++|++||+++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 469999999999999999999999999999999999854 3001289999999876432 124579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
++. ||+||+.++.+..+.... . .....++.+++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~~--------~-------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGINDK--------K-------------------------QLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCcH--------H-------------------------HHHHHHHHHHHHhCCccchhhHhh
Confidence 774 999999987543211000 0 0011234566777763 2233
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+ .+..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ +++|++++|+.+++.+++|
T Consensus 178 ~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 178 K-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCC
Confidence 3 3456999999999999999999999999999999999999999999998743 3677779999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000541 398 DIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~~G~iv~~G~~~~~~ 417 (1433)
++++|++|+++..|+.+++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=317.53 Aligned_cols=213 Identities=28% Similarity=0.407 Sum_probs=170.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCcceEEEECCccCCCCcc---cceEEEEcCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LRVSGRVTYNGHDMDEFVP---QRTAAYISQHDN 240 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 240 (1433)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 1137999999988754322 345899999977
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
.++.+||+||+.++...... .. .... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~---~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA---GALT-------------------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc---ccCC-------------------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 66779999999885311000 00 0000 001123566889999987666554
Q ss_pred cCcccCCCchhHhhHHHHHHHHh---------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMV---------GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE 391 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~---------~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 391 (1433)
+ .|||||||||+||++|+ .+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.++
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~~~~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHDPNL 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH
Confidence 4 69999999999999999 599999999999999999999999999998653 25667778999999
Q ss_pred HHhhcCeEEEecCCeEEEecChhHHH
Q 000541 392 TYDLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 392 ~~~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999988763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=359.69 Aligned_cols=208 Identities=30% Similarity=0.493 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999998 9999999999877654 468999999986665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++.. +.+.+.+.++....+ ..+ .+ -.|++..||.+|+.+.
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~-----l~~-~i--~~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG-----VTE-FV--RRHPDGLDMQIGERGR 600 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC-----hHH-HH--HhCcccccceecCCCC
Confidence 99999988521 001111111111000 011 11 1378889999998764
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.||||||||++||||++.+|++++||||||+||+.+...|.+.|+++. ++.|++.++|..+ +.+.||+|++|++|
T Consensus 601 -~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~---~~~T~iiItHrl~-~~~~~D~iivl~~G 675 (694)
T TIGR03375 601 -SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTS-LLDLVDRIIVMDNG 675 (694)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---CCCEEEEEecCHH-HHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999999864 2455555777764 55789999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++++|+++++.+
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=313.22 Aligned_cols=219 Identities=26% Similarity=0.316 Sum_probs=169.8
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.++ .+.+|+|+|+.|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788888763 23599999999999999999999999999999999998421156899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-hcC--CCC-CChhHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000541 916 QE---T-FARISGYCEQNDIHSPNVTVYESLLYSAW-LRL--PLE-VDSPTRKMFIEEVMELVELN-PLRQALVGLPGVS 986 (1433)
Q Consensus 916 ~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~-lr~--~~~-~~~~~~~~~v~~vl~~l~l~-~~~~~~vg~~~~~ 986 (1433)
.. . .++.++|++|++.+++.+|+.+++.+... ++. ... .......+.++++++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 22468999999888888888777653211 110 000 11122345677888888884 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hcceeEEecCc
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEA-FDELFLLKRGG 1065 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~-fd~~~ll~~gG 1065 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|.+ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999965 23333 799999974 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 99999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=304.84 Aligned_cols=185 Identities=26% Similarity=0.336 Sum_probs=156.9
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5677777653 2469999999999999999999999999999999999876 468999999987532
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000541 917 --ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 917 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqrk 994 (1433)
..+++.++|++|++.+++.+||.|++.+....+. .+ ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----GA--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----Cc--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2244678999999888888999999987643321 11 235678899999987766553 479999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1048 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~ 1048 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998878999999999974
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=314.82 Aligned_cols=211 Identities=20% Similarity=0.349 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD--SSLRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 459999999999999999999999999999999999986 2111389999999886431 124569999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++ .||+||+.++....+.... + .....++.+++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL- 141 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-
Confidence 75 7999999886532211000 0 00112455677788842110001
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +++|+.++|+.+++.+++|+|++
T Consensus 142 ~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEEE
Confidence 233457999999999999999999999999999999999999999999998742 36777799999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 219 LMNGDLIEAGPTEEMF 234 (251)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=300.83 Aligned_cols=170 Identities=31% Similarity=0.444 Sum_probs=149.1
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678877663 2469999999999999999999999999999999999876 468999999987542
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000541 917 -----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991 (1433)
Q Consensus 917 -----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgG 991 (1433)
...++.++|++|++.+++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999998888889999998531 8999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhcceeEEecC
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqp~~~~~~~fd~~~ll~~g 1064 (1433)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999887 899999999974 455679999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=365.21 Aligned_cols=210 Identities=29% Similarity=0.409 Sum_probs=175.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 36999999999852 12459999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+.+ ..+++.+|||+|++.+++ -|++||+.++. | +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 643 457889999999998875 59999997641 1 122 2335666777776543 35566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 368999999999999999999999999999999999999999999986 4899999999974 5677999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=290.77 Aligned_cols=216 Identities=24% Similarity=0.380 Sum_probs=184.2
Q ss_pred cccccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCccc---ceEEEEcCC
Q 000541 162 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQH 238 (1433)
Q Consensus 162 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~ 238 (1433)
..+..+++.+|+|+|..|++|.+|+++|||||||||||.+++.+++.+ +|+|+++|.++.....+ +.++..-|+
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 345567788999999999999999999999999999999999999988 99999999998766543 567888898
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccc
Q 000541 239 DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADT 318 (1433)
Q Consensus 239 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 318 (1433)
...-..+||||-+.||.- +.++-+ +. .+....++..++-|.|++..|.
T Consensus 84 N~i~~rlTV~dLv~FGRf---PYSqGR----lt-------------------------~eD~~~I~~aieyl~L~~l~dr 131 (252)
T COG4604 84 NHINSRLTVRDLVGFGRF---PYSQGR----LT-------------------------KEDRRIINEAIEYLHLEDLSDR 131 (252)
T ss_pred chhhheeEHHHHhhcCCC---cccCCC----Cc-------------------------hHHHHHHHHHHHHhcccchHHH
Confidence 877789999999999732 111111 11 1123457788999999988775
Q ss_pred cccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 000541 319 MVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398 (1433)
Q Consensus 319 ~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 398 (1433)
.+ ..||||||||.-||..++.+.+.++||||.+.||-..+.++++.||++++..++|+|+ +.|+...+-.++|+
T Consensus 132 yL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~ 205 (252)
T COG4604 132 YL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDH 205 (252)
T ss_pred hH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhh
Confidence 55 4699999999999999999999999999999999999999999999999988766655 77999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000541 399 IILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 399 vilL~~G~iv~~G~~~~~~~ 418 (1433)
|+-|++|+++.+|+++++.+
T Consensus 206 IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 206 IVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeecCCEEEecCCHHHhcC
Confidence 99999999999999999864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=316.38 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCCc----ccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEFV----PQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 242 (1433)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46999999999999999999999999999999999998751 013899999998875431 245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+ .||+||+.++...... .... +....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKL---------VPRK------------------------EFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999886432110 0000 01112345678888865332222 2
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|++++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998753 3 67777999999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|+++..|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=314.24 Aligned_cols=211 Identities=22% Similarity=0.328 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCC-C---cccceEEEEcCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDE-F---VPQRTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 242 (1433)
+.+|+|+|+.|++||+++|+||||||||||+++|+|..++. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999998752 0138999999987642 1 1235699999998878
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccC
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 322 (1433)
+ .||+||+.++....+...+ + .....++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 8999999886532211000 0 00112344566677643211111 2
Q ss_pred cccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEe
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 402 (1433)
.....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 23456999999999999999999999999999999999999999999999753 3 67777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000541 403 SDGQIVYQGPREHVL 417 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~ 417 (1433)
++|+++..|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 218 LMGELVEHDDTQVIF 232 (249)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=314.69 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=165.9
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 914 (1433)
.++++|+++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 477899988763 11358999999999999999999999999999999999987 4689999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV-G-----LPGV 985 (1433)
Q Consensus 915 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~v-g-----~~~~ 985 (1433)
.. ..+++.++|++|+..+++. |++|++.+... ... ...+++.++.+++.+..+.+. | ....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999877765 99999976421 111 122344455555543332221 0 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCc
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG 1065 (1433)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ + .+.+|++++|.+ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-T-IKNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HhhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999986 5899999999975 3 456999999985 8
Q ss_pred EEEEEcCC
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~~y~G~~ 1073 (1433)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 99988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=316.64 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=161.9
Q ss_pred EEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCCc
Q 000541 837 TFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ 916 (1433)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 916 (1433)
+++|+++.++.. +++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 567887766310 12359999999999999999999999999999999999876 468999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000541 917 ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA-------LVGLPGVS 986 (1433)
Q Consensus 917 ---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~vg~~~~~ 986 (1433)
...++.++|++|++.+++ .||+|++.+....+ ... ..++.++..++.+..+. ... ....
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456999999987775 69999997642111 111 12233333333222111 111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.+|++++|.+ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999987 7899999999975 33 57999999986 89
Q ss_pred EEEEcCC
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~~y~G~~ 1073 (1433)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9998874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=329.56 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=178.5
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++++||+++++.+ +.++|+|+|+++++||.+||+|+||||||||+..|+|... +.+|+|.+||.+
T Consensus 335 ~~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~ 401 (573)
T COG4987 335 QALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE 401 (573)
T ss_pred ceeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcC
Confidence 379999999999632 3469999999999999999999999999999999999877 569999999987
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccc-------cccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA-------LVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~vg~~ 983 (1433)
+.. ...++.++.++|...+| .-|+++||..+. | +.+ ++.+.++++.+||.+.... .+|+.
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~----~-~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN----P-DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC----C-CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 643 33567789999976554 569999997652 1 222 3446778888998776433 45554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
.+.||||||||++|||+|++|.++++|||||.|||+.|.++|++.|.+-++ |+|+|++||+.. -.+.||+|++|.+
T Consensus 472 -G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~ 547 (573)
T COG4987 472 -GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN 547 (573)
T ss_pred -CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC
Confidence 478999999999999999999999999999999999999999999998764 899999999864 5789999999985
Q ss_pred CcEEEEEcCCC
Q 000541 1064 GGQEIYVGSLG 1074 (1433)
Q Consensus 1064 gG~~~y~G~~~ 1074 (1433)
|+++..|..+
T Consensus 548 -Gkiie~G~~~ 557 (573)
T COG4987 548 -GKIIEEGTHA 557 (573)
T ss_pred -CeeeecCCHH
Confidence 8999999863
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=303.04 Aligned_cols=196 Identities=26% Similarity=0.409 Sum_probs=171.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCCCCCCCCC
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 174 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 246 (1433)
++++..+.-.+|+|-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|.+|||+|+-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999998 999999998763321 2478999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccC
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 326 (1433)
|+-||.|+.... .....|.+.+.||++|..+... .
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P-----~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYP-----G 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCC-----C
Confidence 999999985311 0012466889999999887655 4
Q ss_pred CCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCCe
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 406 (1433)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.+.. +.-|+.++|...|+.+++|+|++|++||
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 699999999999999999999999999999999999999999999998755 4667789999999999999999999999
Q ss_pred EEEecChhHHHH
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999999864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=359.65 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF-SG 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceeh-hH
Confidence 35899999999999999999999999999999999999998 9999999999876654 46899999998666 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|++|||.++.+. +.+.+.+.++....+ .+..+ -.++...||.||+.+
T Consensus 563 TI~eNi~l~~~~------------------------~~~~~~i~~a~~~a~------l~~~i--~~lp~gldt~i~e~G- 609 (708)
T TIGR01193 563 SILENLLLGAKE------------------------NVSQDEIWAACEIAE------IKDDI--ENMPLGYQTELSEEG- 609 (708)
T ss_pred HHHHHHhccCCC------------------------CCCHHHHHHHHHHhC------CHHHH--HhcccccCcEecCCC-
Confidence 999999986310 001111111111000 01111 137788899999865
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
.+||||||||++||||++.+|++++||||||+||+.+...+.+.|++. .+ .|+|.++|..+ +.+.+|+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~-~T~IiitHr~~-~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QD-KTIIFVAHRLS-VAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cC-CEEEEEecchH-HHHcCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999874 23 45566777765 55789999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
++++.|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=359.68 Aligned_cols=206 Identities=25% Similarity=0.405 Sum_probs=163.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
+.+|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 46899999999999999999999999999999999999998 9999999999876653 46899999998655 57
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCccc
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 325 (1433)
|+||||.++.... + .+++.+..+.+++ +..++ .+++..||.+|+.+
T Consensus 570 TIreNI~~g~~~~---~----~e~i~~al~~a~l------------------------~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLTDT---P----DEEIMAAAKAANA------------------------HDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCCCC---C----HHHHHHHHHHcCC------------------------HHHHH--hCCCccCCcccCCC-
Confidence 9999999863210 0 0111111111110 11111 36778899999865
Q ss_pred CCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEecCC
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 405 (1433)
..||||||||++||||++.+|+|++||||||+||+.+...+.+ ... .+++|+|.++|..+ +.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----~~~~TvIiItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS----RASRTVLLIAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc----cCCCeEEEEeccHH-HHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999988887 221 23456666888775 45679999999999
Q ss_pred eEEEecChhHHHH
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+|+++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=304.05 Aligned_cols=194 Identities=23% Similarity=0.303 Sum_probs=162.2
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|+++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56788887763 2469999999999999999999999999999999999887 56899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000541 916 Q--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 916 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~LSgGqr 993 (1433)
. ..+++.++|++|+..+++..||+|++.+.... . .. ...++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 23456799999998888899999999876421 1 11 235788999999877666543 46999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhccee
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ 1059 (1433)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ....+|...
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999965 345566443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=276.21 Aligned_cols=201 Identities=28% Similarity=0.396 Sum_probs=171.5
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc-------cceEEEEcC
Q 000541 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQ 237 (1433)
Q Consensus 165 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 237 (1433)
...+.+||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+-|+++..+.- .+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 345688999999999999999999999999999999999999998 9999999999865532 267999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccc
Q 000541 238 HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCAD 317 (1433)
Q Consensus 238 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 317 (1433)
...++|+||-.||+...+.++|-..+. ........|+.+||.+-.+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~~----------------------------------~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSAD----------------------------------SRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCcccc----------------------------------HHHHHHHHHHHhCcccccc
Confidence 999999999999999988776532111 0112345789999987765
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
-.. ..|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.. ..++|+|.++|+. ....-||
T Consensus 142 HyP-----~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD~-~LA~Rc~ 214 (228)
T COG4181 142 HYP-----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDP-QLAARCD 214 (228)
T ss_pred cCc-----cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCCH-HHHHhhh
Confidence 444 46999999999999999999999999999999999999999999998876 4578888888885 5667899
Q ss_pred eEEEecCCeEEE
Q 000541 398 DIILISDGQIVY 409 (1433)
Q Consensus 398 ~vilL~~G~iv~ 409 (1433)
|++-|.+|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.12 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL--RVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 459999999999999999999999999999999999998741 1269999999876432 124679999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++. ||+||+.++....+..... +.....+.+++.+||.+..... -
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~l~~~-~ 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTAQS---------------------------------RLDEVVEKSLRQAALWDEVKDN-L 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCChhh---------------------------------HHHHHHHHHHHHhCCchhhhhH-h
Confidence 875 9999999875432210000 0011234456666664321111 1
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
++....|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+..++.+++|++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--Q-NYTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHhhCCEEEE
Confidence 23445799999999999999999999999999999999999999999999873 2 46777799999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|++++.|+++++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=314.82 Aligned_cols=207 Identities=21% Similarity=0.274 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--cceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR--VSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~--~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+++|+|+|+++++||+++|+|+|||||||||++|+|.++++.. .+|+|.++|+++... ..++.++|++|++..
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4589999999999999999999999999999999999875311 389999999887431 123569999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCC----cccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD----VCAD 317 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 317 (1433)
++ +||+||+.++.+..+... + .+....++.+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKLP---------Q------------------------ADLDEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHcCCcchhhhHhc
Confidence 87 899999988754321000 0 00112234567777774 2233
Q ss_pred ccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 000541 318 TMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397 (1433)
Q Consensus 318 t~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 397 (1433)
+ ..+.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ +.+|+.++|+.+++.+++|
T Consensus 146 ~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 146 K-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 3 3457999999999999999999999999999999999999999999998743 3677779999999999999
Q ss_pred eEEEec-----CCeEEEecChhHHH
Q 000541 398 DIILIS-----DGQIVYQGPREHVL 417 (1433)
Q Consensus 398 ~vilL~-----~G~iv~~G~~~~~~ 417 (1433)
++++|+ +|+++++|+++++.
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHHh
Confidence 999998 59999999999874
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=313.14 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=173.7
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCC---eeeeEEEEc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGSIMIS 910 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 910 (1433)
..++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999998873 236999999999999999999999999999999999987532 268999999
Q ss_pred CccCC-------cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcc-cccccccC
Q 000541 911 GYPKK-------QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGL 982 (1433)
Q Consensus 911 G~~~~-------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~ 982 (1433)
|.+.. ...+++.++|++|++.+++. ||+||+.+...... .. .....++.++++++.+++.+ +.+.+ ..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-VK-RRSILEERVENALRNAALWDEVKDRL-GD 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-CC-hHHHHHHHHHHHHHHcCCchhhhHHH-hC
Confidence 97642 12345678999999888876 99999987643221 10 11122345677788887742 11111 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
....||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 158 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~ 234 (265)
T PRK14252 158 -LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY 234 (265)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 1357999999999999999999999999999999999999999999999875 699999999974 4667899999998
Q ss_pred cCcEEEEEcCC
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~~y~G~~ 1073 (1433)
+ |+++..|+.
T Consensus 235 ~-G~i~~~g~~ 244 (265)
T PRK14252 235 M-GELIEFGAT 244 (265)
T ss_pred C-CEEEEeCCH
Confidence 5 899999875
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=307.80 Aligned_cols=210 Identities=23% Similarity=0.299 Sum_probs=165.6
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEc--Cc-
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMIS--GY- 912 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~--G~- 912 (1433)
+.++|+++.++.... ...++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888887742100 0012469999999999999999999999999999999999876 458999998 42
Q ss_pred -cCCc---cc---c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-ccccccCC
Q 000541 913 -PKKQ---ET---F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-RQALVGLP 983 (1433)
Q Consensus 913 -~~~~---~~---~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~vg~~ 983 (1433)
+... .. . ++.++|++|+..+++.+||+|++.+..... ........+.++++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1 346899999998999999999998764322 12223334567888999998753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEe
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~ 1062 (1433)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999853 3446789988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=319.68 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=173.5
Q ss_pred eEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCC---CeeeeEEEEcC
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGSIMISG 911 (1433)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 911 (1433)
.+.++|+++.+. .+.+|+++|+++++||+++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998773 24699999999999999999999999999999999998642 14689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-hhHHHHHHHHHHHHcCCcccc
Q 000541 912 YPKKQ-----ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL---------EVD-SPTRKMFIEEVMELVELNPLR 976 (1433)
Q Consensus 912 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~---------~~~-~~~~~~~v~~vl~~l~l~~~~ 976 (1433)
.++.. ...++.++|++|+..+++ .||+||+.+....+... ... ....++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 123567999999988777 59999998864322100 011 122345678888888874311
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhc
Q 000541 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD 1056 (1433)
Q Consensus 977 ~~~vg~~~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd 1056 (1433)
..... .....||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12467999999999999999999999999999999999999999999999976 489999999975 4667899
Q ss_pred cee-EEecCcEEEEEcCC
Q 000541 1057 ELF-LLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1057 ~~~-ll~~gG~~~y~G~~ 1073 (1433)
+++ +|. +|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 455 5899999985
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=311.52 Aligned_cols=219 Identities=18% Similarity=0.244 Sum_probs=173.7
Q ss_pred eeEEEeceeeEeecCcc----ccC--Ccc-cccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeE
Q 000541 834 HSITFDEIAYSVDMPQE----MMR--PGV-LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGS 906 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~----~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~ 906 (1433)
+.+.++|++..++.... .+. .+. ....+.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 35777887655543210 110 001 1244679999999999999999999999999999999999887 46899
Q ss_pred EEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000541 907 IMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 907 I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
|.++|. ++++.|+..+.+.+|+.|++.+..... ....++....++++++.+++.+..+.. +.
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 356777776778899999998754332 122334445567788888887766654 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 987 ~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
.||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++.+.|+|||+++|++. .+.+.+|++++|.+ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999964 45677899999985 89
Q ss_pred EEEEcCCC
Q 000541 1067 EIYVGSLG 1074 (1433)
Q Consensus 1067 ~~y~G~~~ 1074 (1433)
++..|+..
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99998863
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.59 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcceEEEECCccCCCC-----cccceEEEEcCCCCC
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS--LRVSGRVTYNGHDMDEF-----VPQRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 241 (1433)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999987531 11389999999987542 123569999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCcccccccc
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 321 (1433)
++. ||+||+.|+.+..+... .. .....++.+++.+|+.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKN---------KK------------------------TLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCC---------HH------------------------HHHHHHHHHHHHhcCchhhHHHh-
Confidence 874 99999998754321100 00 01112344667777643211111
Q ss_pred CcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 401 (1433)
+...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+.+|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 233457999999999999999999999999999999999999999999998753 3 5777789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000541 402 ISDGQIVYQGPREHVL 417 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~ 417 (1433)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999988764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=299.34 Aligned_cols=170 Identities=24% Similarity=0.421 Sum_probs=148.4
Q ss_pred EEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCccCC
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 915 (1433)
++++|+++.+ +|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 6777777642 7999999999999999999999999999999999987 46899999998764
Q ss_pred cc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000541 916 QE----TFARISGYCEQND---IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 916 ~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~~L 988 (1433)
.. ..++.++|++|+. .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 32 2356799999984 57888999999976421 8
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEecCcE
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~gG~ 1066 (1433)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999999999999999999999999999999877899999999974 56777999999986 54
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.26 Aligned_cols=201 Identities=26% Similarity=0.403 Sum_probs=168.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCcc---cceEEEEcCCCCCCCCCCH
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 171 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 247 (1433)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 3 8999999998765432 2458999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccccCcccCC
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 327 (1433)
+||+.+..... . ... +....++.+++.+||++..++.++ .
T Consensus 87 ~~nl~~~~~~~-~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T----------RTE------------------------AVASALNEVAEALGLDDKLGRSVN-----Q 126 (248)
T ss_pred HHHHHhcCccC-C----------CcH------------------------HHHHHHHHHHHHcCCHhHhcCCcc-----c
Confidence 99998753110 0 000 011234668899999876666554 5
Q ss_pred CchhHhhHHHHHHHHhC-------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 328 ISGGQKKRVTTGEMMVG-------PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 328 LSGGqrqRvsia~aL~~-------~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ--QGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999854 35677779999999999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000541 401 LISDGQIVYQGPREHVL 417 (1433)
Q Consensus 401 lL~~G~iv~~G~~~~~~ 417 (1433)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987753
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=303.84 Aligned_cols=190 Identities=23% Similarity=0.323 Sum_probs=156.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCccCCCCc-------ccceEEEEcCCCC
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-------PQRTAAYISQHDN 240 (1433)
Q Consensus 168 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~ 240 (1433)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 356999999999999999999999999999999999999987 999999998854211 2357999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCccccccc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMV 320 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 320 (1433)
+++.+||+||+.++....+.. .. +....++.+++.+||++..++.+
T Consensus 87 ~~~~~t~~e~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~ 132 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKKLS----------KK------------------------EKREKKKEALEKVGLNLKLKQKI 132 (206)
T ss_pred hccCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCchhhhcCCh
Confidence 889999999999865422110 00 01123466889999987777665
Q ss_pred cCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 000541 321 GDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 321 g~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 400 (1433)
. .||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.. . +++++.++|+... .+.+|+++
T Consensus 133 ~-----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~-~~~~d~i~ 204 (206)
T TIGR03608 133 Y-----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-E-GKTIIIVTHDPEV-AKQADRVI 204 (206)
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH-HhhcCEEE
Confidence 4 5999999999999999999999999999999999999999999999764 2 5566668888765 47899998
Q ss_pred Ee
Q 000541 401 LI 402 (1433)
Q Consensus 401 lL 402 (1433)
+|
T Consensus 205 ~l 206 (206)
T TIGR03608 205 EL 206 (206)
T ss_pred eC
Confidence 75
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=310.84 Aligned_cols=210 Identities=21% Similarity=0.359 Sum_probs=167.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CcceEEEECCccCCCCc---ccceEEEEcCCCC
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL---RVSGRVTYNGHDMDEFV---PQRTAAYISQHDN 240 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~---~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~ 240 (1433)
+.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+|+. .+.|+|.++|+++.... .++.++|++|++.
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 44679999999999999999999999999999999999998761 12355555566554322 2457999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc----cc
Q 000541 241 HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV----CA 316 (1433)
Q Consensus 241 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~ 316 (1433)
+++.+||+||+.++....+... + .+....++.+++.+|+.+ ..
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~~~~~~l~~~~~~~~ 147 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKE---------K------------------------REIKKIVEECLRKVGLWKEVYDRL 147 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCccchhhh
Confidence 8899999999998743211100 0 001123456788888863 23
Q ss_pred cccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 000541 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396 (1433)
Q Consensus 317 dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 396 (1433)
+. ..+.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.+ +.+|+.++|+..++.++|
T Consensus 148 ~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~~~~~~~~ 219 (257)
T PRK14246 148 NS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNPQQVARVA 219 (257)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCHHHHHHhC
Confidence 33 3456999999999999999999999999999999999999999999998743 367777899999999999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 000541 397 DDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 397 D~vilL~~G~iv~~G~~~~~~ 417 (1433)
|++++|++|+++.+|+.+++.
T Consensus 220 d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 220 DYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988765
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=312.17 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcceEEEECCcc-----CCCCcc-------cceEEEEc
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD-----MDEFVP-------QRTAAYIS 236 (1433)
Q Consensus 169 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 236 (1433)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 45899999999999999999999999999999999999987 9999999976 443221 23589999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHhcCCCcchhhhhhhhHHHHhcCCCCCCChHHHHHHhhhhhhhhhHHHHHHHHHhCCCc
Q 000541 237 QHDN--HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV 314 (1433)
Q Consensus 237 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 314 (1433)
|++. ..+.+|+.||+.+......... .. +....++.+++.+|+.+
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGARH---------YG------------------------NIRAAAHDWLEEVEIDP 139 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhcccc---------hH------------------------HHHHHHHHHHHHcCCCh
Confidence 9864 4566799999976422100000 00 01123456889999963
Q ss_pred -cccccccCcccCCCchhHhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 000541 315 -CADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393 (1433)
Q Consensus 315 -~~dt~vg~~~~~gLSGGqrqRvsia~aL~~~p~illlDEPtsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 393 (1433)
..++.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+.++|+++|+.+++.
T Consensus 140 ~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 140 TRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVAR 213 (253)
T ss_pred hhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 555554 469999999999999999999999999999999999999999999987653 3567777899999999
Q ss_pred hhcCeEEEecCCeEEEecChhHHH
Q 000541 394 DLFDDIILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 394 ~~~D~vilL~~G~iv~~G~~~~~~ 417 (1433)
+++|++++|++|++++.|+.+++.
T Consensus 214 ~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 214 LLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=360.34 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=177.4
Q ss_pred eeEEEeceeeEeecCccccCCcccccceeeeccceeEEeCCeEEEEeccCCCChHHHHhhhcCCCCCCeeeeEEEEcCcc
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 913 (1433)
..++|+|++|+|+. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 36999999999842 12459999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
+++ ..+++.++||+|++.+++ .|++||+.+.. | +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998876 59999997641 1 122 2335566666665442 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhcceeEEec
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~~LSgGqrkRl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~fd~~~ll~~ 1063 (1433)
+ .+||||||||++|||||+++|+||+||||||+||+.+...|++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999986 4799999999975 5688999999985
Q ss_pred CcEEEEEcCC
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~~y~G~~ 1073 (1433)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1433 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-05 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-05 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1433 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-24 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-23 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-17 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-10 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 9e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-09 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-05 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 6e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 9e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 7e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-05 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 9e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 4e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 5e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGY-PKKQETFA 920
L G+S G + L+G +GAGKTT + +++ + + SG + + G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 921 RIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R Y + N+ E L + A S + +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1040 VVCTIH 1045
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 56/263 (21%), Positives = 85/263 (32%), Gaps = 82/263 (31%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE--- 225
ILK +S I G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 226 -------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
++P+ AY M E L F A S E+
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEM----- 126
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
+ +I GL V S G +++
Sbjct: 127 ------------------------VERATEIAGLGEKIKDRVS-----TYSKGMVRKLLI 157
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ----------SIHILKGTTLISLLQP 388
++ + +DE ++GLD ++ L+Q S H +
Sbjct: 158 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM----------- 206
Query: 389 APETYDLFDDIILISDGQIVYQG 411
E L D I LI +G IV G
Sbjct: 207 -LEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 39/204 (19%), Positives = 81/204 (39%), Gaps = 25/204 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L ++ G + G +G GKTTL+ ++ + G I+ +G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGK 79
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
I + + I ++V + L A L K I + +E VE+ L++
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1040
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRG 1064
+ + + D L +
Sbjct: 188 ISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 64/248 (25%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE---- 225
+L+ ++ I G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 226 --FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
F+P+ +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMV 343
L+ + + L +S G +RV ++
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 344 GPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403
A+ +D+ +D + +++ S+ + I KG +IS + E D +
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS----SREELSYCDVNENLH 204
Query: 404 DGQIVYQG 411
Sbjct: 205 KYSTKIDK 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETF 919
L ++ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI--------------EV 64
Query: 920 ARISGYCEQNDIHSPNVTVYESLL-----YSAWLRLPLEVDSPTRKMFIEEVMELVELNP 974
+ G+ Q +V + +L + P D + ++ + L
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTH 120
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1033
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 121 LAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
TVV T HQP+ +V ++ LL +
Sbjct: 176 QSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 36/250 (14%), Positives = 84/250 (33%), Gaps = 54/250 (21%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
++ ++ Q + +V + + G R ++ ++ + D V M
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----G---RSTHINTFAKPKSH-------DYQVAM 110
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
+A L L L A +SGGQ++ + + + +
Sbjct: 111 QA---------------LDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLI 150
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL--LQPAPETYDLFDDIILISDGQI 407
+DE ++ LD + +++ L T + + + + +L++
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNF 207
Query: 408 VYQGPREHVL 417
+ G ++L
Sbjct: 208 KF-GETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 37/217 (17%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-----YPKKQE 917
L +SG R G + L+G +GAGK+TL+ +AG +G GSI +G + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATK- 70
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
A Y Q V+ L + R + +V + L+
Sbjct: 71 -LALHRAYLSQQQTPPFATPVWHYLTLH---QHDKT-----RTELLNDVAGALALDDKLG 121
Query: 978 ALVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 122 RST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 1031 RNTVDTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
G +V + H D+ +LLK G
Sbjct: 177 SALSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 52/273 (19%), Positives = 82/273 (30%), Gaps = 90/273 (32%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 230 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV--------TT 338
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDV---------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--------GTTLISLLQPAP 390
+ Q L +DE LD + Q + K G ++
Sbjct: 146 PQANPAG-QLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS---- 190
Query: 391 ETYDL------FDDIILISDGQIVYQGPREHVL 417
+DL L+ G+++ G RE VL
Sbjct: 191 --HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGSIMISGYPKKQETF 919
+L +S G L G++GAGKTTL+++L T SG++ + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 920 ------ARISGYCEQNDIH---SPNVTVYESLLYSAWLRLPLEVDSPTRKMFI--EEVME 968
I G+ + V + ++ A+ + + ++ ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGV-YQDIDDEIRNEAHQLLK 147
Query: 969 LVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1029 TVR--NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + ++ H +I F ++ LLK G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 53/259 (20%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
TILK +S I G +L G +GKTTLL L ++ SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 230 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
++S + V + + S + +G + D
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIGVYQD---------------ID 135
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+ ++ A + +LK++G+ A +G +S G+K+RV +
Sbjct: 136 DE----IRNEAHQ----------LLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARAL 176
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL----LQPAPETYDLFDD 398
+G Q L +DE + GLD +++ L +I ++ F
Sbjct: 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA---NFSK 232
Query: 399 IILISDGQIVYQGPREHVL 417
I+L+ DGQ + QG E +L
Sbjct: 233 ILLLKDGQSIQQGAVEDIL 251
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 827 MVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLV------LLNGVSGAFRPGVLTALM 880
L F+ ++ F + D+ + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 881 GVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTV 938
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 939 YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTI 998
+ F +V++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 999 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1041
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 7e-13
Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIM---ISGYPKKQETFARISGYC 926
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 927 EQND--------IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
E + + + + + L L++ ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGEL---LKLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1039 TVV 1041
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 46/261 (17%), Positives = 76/261 (29%), Gaps = 71/261 (27%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYN--------- 219
+ RPG++ L+G GK+T L LAGK +L R +
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 220 ---GHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
+ A Q+ ++I ++ + + + ++ R
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKR---- 204
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
+KIL L+ V + +SGG+ +R
Sbjct: 205 -----------------------------YIKILQLE-----NVLKRDIEKLSGGELQRF 230
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLI------SLLQP 388
G V A DE S+ LD +R L +I S+L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS----LLAPTKYVICVEHDLSVLD- 285
Query: 389 APETYDLFDDIILISDGQIVY 409
L D + +I VY
Sbjct: 286 -----YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 46/223 (20%), Positives = 70/223 (31%), Gaps = 58/223 (26%)
Query: 163 PSRKKHL--TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG 220
PS KK +L G + +++G +GKTTL+ LAG L G+
Sbjct: 357 PSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD---- 409
Query: 221 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+P+ + Q TVR+ R + +
Sbjct: 410 ------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQ---- 448
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
++K L +D D V +SGG+ +RV
Sbjct: 449 -----------------------TDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVL 480
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
+ PA +DE S LDS +R+ I K T I
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 41/211 (19%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYISGSIMISGYPKKQETFARISGYCEQN-D 930
G ++G +G+GKTTL+ ++G SG+I I+G + Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 931 IHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPG------ 984
+ VTV + + E+ + + + +E+++ + L
Sbjct: 83 AYEIGVTVNDIVYL------YEEL----KGLDRDLFLEMLKA-------LKLGEEILRRK 125
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVT 182
Query: 1045 HQPSIDIVEAF---DELFLLKRGGQEIYVGS 1072
H ++ + G + S
Sbjct: 183 H----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 42/264 (15%), Positives = 85/264 (32%), Gaps = 68/264 (25%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+ L++++ + G ++LGP SGKTTLL A++G L SG + NG +
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGME 66
Query: 223 MDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
+LK L L + L +S GQ V T
Sbjct: 109 ----------------------LEMLKALKL----GEEILRRKLYKLSAGQSVLVRTSLA 142
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD------L 395
+ + + +DE +D++ I +++ ++ T++
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THELDMLNLY 191
Query: 396 FDDIILISDGQIVYQ-GPREHVLE 418
+ G + +LE
Sbjct: 192 KEYKAYFLVGNRLQGPISVSELLE 215
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 32/227 (14%)
Query: 821 HHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDK---LVLLNGVSGAFRPGVLT 877
+ + F+P+ I F +++ VD+ +E + K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 878 ALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPN 935
++G +G GKTT + +LAG T G + + ++ K Q I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYE 431
Query: 936 VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKR 995
TVYE L +L + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQR 479
Query: 996 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1041
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-14
Identities = 61/295 (20%), Positives = 101/295 (34%), Gaps = 82/295 (27%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+ L+ G IR G + ++GP GKTT + LAG + + G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
T AY Q+ E TV E L+ S+L+
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYK------ 452
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+LK LG+ D V D +SGG+ +RV +
Sbjct: 453 ---------------------TELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF------ 396
+ A +DE S LD + ++R + + T L+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVS 539
Query: 397 DDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQE--VTSRKDQEQY 449
D +I+ +G+ G L R+G+ FL +T R+D +
Sbjct: 540 DRLIVF-EGEPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYISGSIMISGYPKK-- 915
+ + G++ ++G +G GKTT + +LAG+ S +I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 916 QETFARISGYCEQNDIHSPNV-TVYESLLYSAWLRLPLEVDSPTRKM-FIEEVMELVELN 973
Q F R+ +I P V Y LL A E+ ++ EEV++ +EL
Sbjct: 165 QNYFERLKN----GEI-RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
+ + LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 220 NVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 1034 VDTGRTVV 1041
+ G+ V+
Sbjct: 275 ANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 62/227 (27%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL---RVSGRVTYNGHDMDEF 226
+ I++ G + ++GP +GKTT + LAG+L +L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 227 VPQRTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
+ ++K L L+ D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELENVLDRELHQ-----LSGGELQRVAI 239
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLI 383
++ A F DE S+ LD ++ +R+ L G ++
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR----LANEGKAVL 282
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-18
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 23/231 (9%)
Query: 814 KAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRP 873
K + A + K R + F ++ +++ + + + + L +G +
Sbjct: 235 KGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKW-TKIIKKLGDFQLVVDNGEAKE 293
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHS 933
G + ++G +G GKTT +L G T GS+ +I Y Q +
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPN 342
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
+ TV + +L + T F EEV + + L+ L ++ V + LS +
Sbjct: 343 YDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGEL 391
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 86/297 (28%)
Query: 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDM 223
+K L +G + G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 224 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 284 DIDV---FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
D V A+ +S + + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF---- 396
+ A +D+ S+ LD + + ++++ K T I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDY 451
Query: 397 --DDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQE--VTSRKDQEQY 449
D II+ G+ G + + G+ +FL+E VT R+D E
Sbjct: 452 IADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 74/263 (28%)
Query: 172 LKDVS-GIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL-RVSGRVTYN-------GHD 222
K + + +LG GKTT+L LAG++ + + +V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 223 M-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAA 277
+ + + + + Q+ + + G+ +E+L+++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKK- 119
Query: 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT 337
D + ++L + + +SGG +R+
Sbjct: 120 --------------------------DEVKELLNMTNLWNKDANI-----LSGGGLQRLL 148
Query: 338 TGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPE 391
++ A D+ S+ LD + ++R+ +LK +I +L
Sbjct: 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD---- 201
Query: 392 TYDLFDDIILISDGQIVYQGPRE 414
L D I +I VY +
Sbjct: 202 --YLTDLIHIIYGESSVYGRVSK 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGY------ 925
+ + ++G +G GKTT++ +LAG I + K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78
Query: 926 -----CEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
E +H Y S + L + +EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN--- 133
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1041 VCTIH 1045
+ H
Sbjct: 191 IVVDH 195
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-17
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L G + G + ++G +G GKTT + +LAG T G I + ++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
I TVYE L + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1040
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1041 V 1041
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-11
Identities = 63/324 (19%), Positives = 109/324 (33%), Gaps = 84/324 (25%)
Query: 136 VGSRALPTFFNFCANIIEGFLNSVNILPSRKKHL--TILKDVSGIIRPGRMTLLLGPPAS 193
V R F +E ++ P K L+ G I+ G + ++GP
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGI 323
Query: 194 GKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 253
GKTT + LAG + + G++ ++ + PQ YI E TV E L+
Sbjct: 324 GKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ----YIKAD----YEGTVYELLS- 369
Query: 254 SARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD 313
S+L+ +LK LG+
Sbjct: 370 ----------KIDASKLNSNFYKT---------------------------ELLKPLGII 392
Query: 314 VCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQS 373
D V + +SGG+ +RV ++ A +DE S LD + ++R
Sbjct: 393 DLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 374 IHILKGTTLISLLQPAPETYDLF------DDIILISDGQIVYQGPREHVLEFFKFMGFEC 427
+ + T L+ +D+ D +++ +G+ G L
Sbjct: 448 MEKNEKTALVV-------EHDVLMIDYVSDRLMVF-EGEPGKYG---RALPPM------- 489
Query: 428 PKRKGVADFLQE--VTSRKDQEQY 449
R+G+ FL +T R+D +
Sbjct: 490 GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-11
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYISGSIMISGYPKK--QETFARISGY 925
+ G++ ++G +G GK+T + +LAG+ G S +I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 926 CEQNDIH----SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
+I V + + L+ T K+ EEV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDL-IPKAVKGKVIELLKKADETGKL--EEVVKALELENVLEREI- 156
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 42/263 (15%), Positives = 82/263 (31%), Gaps = 80/263 (30%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSL---RVSGRVTYNGHDMDEF 226
+ +++ G + ++GP +GK+T + LAG+L +L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 227 VPQRTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGSRHEMLSELSRREK 275
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKR 335
A ++ + ++ +SGG+ +R
Sbjct: 145 ALELENVLEREIQH--------------------------------------LSGGELQR 166
Query: 336 VTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILK--GTTLI------SLLQ 387
V ++ A F DE S+ LD ++R+ L G +++ ++L
Sbjct: 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR----LSEEGKSVLVVEHDLAVLD 222
Query: 388 PAPETYDLFDDIILISDGQIVYQ 410
L D I ++ VY
Sbjct: 223 ------YLSDIIHVVYGEPGVYG 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 4e-16
Identities = 59/280 (21%), Positives = 110/280 (39%), Gaps = 58/280 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
LK ++ I+ G +T +LG GK+TL G L S SGR+ ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 232 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVT-TGEMM 342
LK G++ D +S GQKKRV G ++
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ P + L +DE + GLD +I+ L + + G T+I D++ ++
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVM 217
Query: 403 SDGQIVYQGPREHVL---EFFKFMGFECPKRKGVADFLQE 439
+G+++ QG + V E + + P+ + + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP--KKQETF 919
L G++ + G +TA++G +G GK+TL G + + SG I+ P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 920 ARIS---GYCEQNDIHSPN-----VTVYESLLYSAWLRLP--LEVDSPTRKMFIEEVMEL 969
++ G Q+ P+ +VY+ + + +++ + ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG-----AVNMKLPEDEIRKRVDNALKR 130
Query: 970 VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 1030 VRN-TVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
+ + G T++ H IDIV + D +F++K G
Sbjct: 186 LVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 43/218 (19%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L VS G + G +G+GK+TL+ ++AG T SG ++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 922 ISGYCEQNDIHSP-----NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
G Q P V++ + ++ + + LV +
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFA-----------VKNFYPDRDPVPLV-----K 118
Query: 977 QAL--VGLPGVS-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
+A+ VGL S LS +++R+ IA +V P I+ +DEP GLD ++
Sbjct: 119 KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
R V G+TV+ H I+ V D + +L++G
Sbjct: 179 RIVEKWKTLGKTVILISH--DIETVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRT 231
L++VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 232 AAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
Q+ ++ V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR------DPVPLVKKA------------- 120
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG-----ISGGQKKRVT-TGEMMVG 344
++ +GLD + + +SGG+K+RV ++
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRVAIASVIVHE 156
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
P L +DE GLD ++ + + G T+I + + D ++++
Sbjct: 157 P-DILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVVLEK 213
Query: 405 GQIVYQGPREHVLE 418
G+ V+ G R LE
Sbjct: 214 GKKVFDGTRMEFLE 227
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 94/681 (13%), Positives = 182/681 (26%), Gaps = 221/681 (32%)
Query: 71 EANEVDVCNLGPQERQRIIDKLVK--VADVD-------------NEEF--LLKLKNRIDR 113
E E + I+ V + D EE ++ K+ +
Sbjct: 10 ETGEHQYQY------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 114 VGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANII------------------EGF 155
T+ + E + + +V L + F + I +
Sbjct: 64 TLRLFWTLLSKQEEM---VQKFVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 156 LNSVNILP----SRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR 211
N + SR + L+ +RP + L+ G SGKT + L +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------- 171
Query: 212 VSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
+ + D I + ++ C + EML +L
Sbjct: 172 ------------------LSYKVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLL 206
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL-------GLDVCADTMVGD-E 323
+ DP+ ++ + + ++L L V + V + +
Sbjct: 207 YQ-------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAK 257
Query: 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI 383
+ K +TT +++ L ++TT I H T
Sbjct: 258 AWNAFNLSCKILLTTRFK-----------QVTDFLSAATTTHIS-----LDHHSMTLTP- 300
Query: 384 SLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFEC---PKR-KGVADFLQE 439
E L + + PRE P+R +A+ +++
Sbjct: 301 ------DEVKSLLLKYLDCRPQDL----PRE-----------VLTTNPRRLSIIAESIRD 339
Query: 440 VTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFDK----RKSHRAA 495
+ W + ++ V + + + E R FD+ S A
Sbjct: 340 GLAT------W----DNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPS--AH 386
Query: 496 LTTKIYGV----SKKE----LLKACMSRELLLMKRNSFVYIFKLCQLTIMGL---VAMTL 544
+ T + + K ++ L+ + +I + + + L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-------SIPSIYLELKVKL 439
Query: 545 FFRTKMHRDSIT------------------DGVIYTGALFFIVLMIMFNGMAEIPMTIAK 586
+HR + D Y I + E +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY----SHIGHHLKNIEHPE---RMTL 492
Query: 587 LPIFYKQRDLRF------YPSWAYALSTWILKIPISYIEVAVWVFLTY--YVIGFDPNVG 638
+ + D RF + S A+ S IL + Y Y+ DP
Sbjct: 493 FRMVF--LDFRFLEQKIRHDSTAWNASGSILNT--------LQQLKFYKPYICDNDPKYE 542
Query: 639 RLFRQYLLLLFLNQMASALFR 659
RL +L FL ++ L
Sbjct: 543 RLVNA--ILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-11
Identities = 99/680 (14%), Positives = 204/680 (30%), Gaps = 218/680 (32%)
Query: 127 HLNVEA--EAYVGSRALPTF---F--NFCANIIEGFLNSVNILPSRK-KHLTILKD-VSG 177
H++ E Y L F F NF ++ S+ L + H+ + KD VSG
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSG 63
Query: 178 IIRPGRMTLLLGPPASGKTTLLLALAGKLDSS---LRVSGRVTYNGHDMDEFVPQRTAAY 234
+R LL + + + + L + L + M T Y
Sbjct: 64 TLR--LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMY 112
Query: 235 ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF-MKAAA 293
I Q D + V F+ V SR + +L R+ ++P ++ + + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 294 TEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI---SGGQKKRVTTGEMMVGPAQALF 350
G+ + + LDVC V +M I + E ++ Q L
Sbjct: 162 --GK--TW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKLL 206
Query: 351 MD---EISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL--QPAPETYDLFDDIILISDG 405
++ D S+ +++ IH ++ L LL +P + ++ +
Sbjct: 207 YQIDPNWTSRSDHSS------NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNV---QNA 256
Query: 406 QIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEF 465
+ C L +T+R K+
Sbjct: 257 KAW------------NAFNLSCK-------IL--LTTRF------------------KQV 277
Query: 466 ADAFQVFYMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSF 525
D D + + +L K ++L RE+L N
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDL-----PREVL--TTNPR 328
Query: 526 VYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGALFFIVLMIMFNGMAE-IPMTI 584
+ ++A + RD + A + + + + I ++
Sbjct: 329 R----------LSIIA-------ESIRDGL--------ATWDNWKHVNCDKLTTIIESSL 363
Query: 585 AKL-PIFYKQR--DLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLF 641
L P Y++ L +P S IP + + +W + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPP-----SA---HIPTILLSL-IWFDVIKSDV---------- 404
Query: 642 RQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIW 701
++ +N++ + L+ + + ++ +++ + E+
Sbjct: 405 -----MVVVNKLHK--YSLVEKQPKE-------STISIPSIYLE--LKVKLEN------- 441
Query: 702 AYWCSPLMYAQNAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYW-LG--LG 758
YA + +V+ + N + + P + D Y+Y +G L
Sbjct: 442 -------EYALHRSIVDHY--NIPKTFDSDDLIPP----------YLDQYFYSHIGHHLK 482
Query: 759 AL------AGFILLF-NFGF 771
+ F ++F +F F
Sbjct: 483 NIEHPERMTLFRMVFLDFRF 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 9e-09
Identities = 75/547 (13%), Positives = 144/547 (26%), Gaps = 156/547 (28%)
Query: 805 IQLSTSGRSKAEVKANHHKKR--GMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLV 862
I+ S + R F Y+V Q ++ L L+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQPYLK---LRQALL 145
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYISGSIM---ISGYPKKQET 918
L RP + GV G+GKT + +DV K + I + +
Sbjct: 146 EL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 919 FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQA 978
+ Q D PN T + L + S E+ L++ P
Sbjct: 199 LEMLQKLLYQID---PNWTSRSDHSS----NIKLRIHS-----IQAELRRLLKSKPYENC 246
Query: 979 LVGLPGVSG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAA 1024
L+ L V L T + K++T + A + I +D + L +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKS 305
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084
++++ + V T + + I+ R +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSII------------------AESIRDGLATWDNW 347
Query: 1085 EGIRG---VSKIKDGYN---PAT-----WML-----EVTAPSQETALGI----------- 1117
+ + + I+ N PA L P+ L +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--LLSLIWFDVIKSDVM 405
Query: 1118 DFAD-IYKSSELYRRNK-------ALIKDISKPAPGSKDLH--FATQYAQSFFTQCMACL 1167
+ ++K S + ++ K ++ ++ LH Y +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN---IPKTF-DS 461
Query: 1168 WKQHWSYWRNPPYSAVRFLFTTIIALAFGTMFWDMG--TKTKKQQDLFNAMGSMYTAVLF 1225
Y Y + +G K + + ++ F
Sbjct: 462 DDLIPPYLDQ--YF-----------------YSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 1226 LGVQNAASVQPVVSIERTVFYRERAAGMYSALPYAFAQALIEI----PYIFVQSVTYGVI 1281
+E+ + R + L ++ PYI Y +
Sbjct: 503 --------------LEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 1282 VYAMIGF 1288
V A++ F
Sbjct: 545 VNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 5e-06
Identities = 60/453 (13%), Positives = 130/453 (28%), Gaps = 134/453 (29%)
Query: 816 EVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGV 875
E + ++ + ++ F+ + + DMP+ ++ ++ ++ + VSG R
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--- 66
Query: 876 LTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETF--ARISGYCEQNDI 931
L L ++ ++ Y F + I Q
Sbjct: 67 --------------LFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQP-- 105
Query: 932 HSPNVTVYESLLYSAWLRLPLEVDSPT-RKMFI---EEVME----LVELNPLRQALV-GL 982
S +Y R L D+ K + + ++ L+EL P + L+ G+
Sbjct: 106 -SMMTRMYIE------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSII-FMDEP----TSGLDARAAAIV--MRTVRNTVD 1035
G SG + +A+++ + + MD ++ ++ + +D
Sbjct: 159 LG-SGKT-------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 1036 TGRTVVC----TIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGV- 1090
T I I L K Y L L+ + V
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-----YENCL------LV-----LLNVQ 254
Query: 1091 -SKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRNKALIKDISKPAPGSKDL 1149
+K + +N + +L T Q T DF ++ + + S
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVT----DFLSAATTTHIS------LDHHSMT------- 297
Query: 1150 HFATQYAQSFFTQCM----------ACL---------------WKQHWSYWRNPPYSAVR 1184
+S + + W W++ +
Sbjct: 298 -LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL- 355
Query: 1185 FLFTTIIALAFGTMFWDMGTKTKKQQDLFNAMG 1217
TTII + + + + + +F+ +
Sbjct: 356 ---TTIIESSLNVL------EPAEYRKMFDRLS 379
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YISGSIMISGYPKKQETFA 920
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 921 R---ISGYCEQ--NDIHSPNVTVYES----LLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
R + G+ Q I P +T E+ +L K E L+
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAK---ERGEYLLS 126
Query: 972 LNPLRQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
+GL LS +++R+ IA L P ++F DEPT LD+ V
Sbjct: 127 E-------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 1027 MRTVRNTVDTGRTVVCTIHQPSI 1049
M + G ++V H+ +
Sbjct: 180 MDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 60/251 (23%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
ILK +S ++ G ++G SGK+TLL L G LD+ G+V G ++D
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNE 73
Query: 229 QRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ + ++ Q I E+T E + G + E +E+
Sbjct: 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-PKKE------AKERG----- 121
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG---ISGGQKKRVTT 338
+ L LGL GD++ R +SGG+++RV
Sbjct: 122 ---------------EYL-------LSELGL--------GDKLSRKPYELSGGEQQRVAI 151
Query: 339 GEMMVGPAQALFMDEISTG-LDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFD 397
+ LF DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPILLFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELTH 207
Query: 398 DIILISDGQIV 408
+ + DG++V
Sbjct: 208 RTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YISGSIMISGYPK 914
E+ + L V+ + G ++MG SG+GK+T+++++ + T G +I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 915 KQETFAR---ISGYCEQ--NDIHSPNVTVYES----LLYSAWLRLPLEVDSPTRKMFIEE 965
+ T R I G+ Q N I P +T E+ L++ + + +
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMS-------GEERRKR 124
Query: 966 VMELVELNPLRQALVGL--------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1017
+E +++ L P + LS Q++R+ IA L NP II D+PT
Sbjct: 125 ALECLKM-------AELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWA 175
Query: 1018 LDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1049
LD++ +M+ ++ + G+TVV H ++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 63/255 (24%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ LK+V+ I+ G ++GP SGK+T+L + G LD G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKP--TEGEVYIDNIKTNDLDD 74
Query: 229 QRTAAY-------ISQHDNHIGEMTVRET----LAFSARCQGVGSRHEMLSELSRREKAA 277
+ Q N I +T E L F R + S E RR++A
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR-GAM-SGEE------RRKRA- 125
Query: 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG---DEMLRGISGGQKK 334
E LK+ L + +++ SGGQ++
Sbjct: 126 -------------------LEC-------LKMAEL---EERFANHKPNQL----SGGQQQ 152
Query: 335 RVTTGEMMVGPAQALFMDEISTG-LDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETY 393
RV + + D+ T LDS T +I+ L++ ++ G T++ ++
Sbjct: 153 RVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVA 209
Query: 394 DLFDDIILISDGQIV 408
+ II + DG++
Sbjct: 210 RFGERIIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 45/207 (21%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGSIM-----ISGYP 913
L+GVS + G +T ++G +G+GK+TL++V+ TG G + I+
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADEGRVYFENKDITNKE 75
Query: 914 KKQ-------ETFARISGYCEQNDIHS-PNVTVYE-----------SLLYSAWLRLPLEV 954
+ TF Q +TV E S L S + + +
Sbjct: 76 PAELYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK 126
Query: 955 DSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014
+ + +++E ++L+ L G LS Q K + I L+ NP +I MDEP
Sbjct: 127 EEEMVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVV 1041
+G+ A + V G T +
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 9e-10
Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 41/212 (19%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 229 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
Y I Q + EMTV E L C G + + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE---- 340
M A + IL+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQ 372
+M P + + MDE G+ I N + +
Sbjct: 168 LMTNP-KMIVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 4e-11
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 74/259 (28%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRVTYNGHDMD 224
IL+D+S +P + GP GK+T+ LL R +G +T +G +D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL---------ERFYQPTAGEITIDGQPID 67
Query: 225 EFVPQ--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ R+ ++SQ D+ I T+RE L + G++
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEG 102
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGI--SGGQKKRVTT 338
D + + + + ++ + L +T VG+ RG+ SGGQ++R+
Sbjct: 103 DYTDEDLWQVL-----DLAFARSFVENMPDQL----NTEVGE---RGVKISGGQRQRLAI 150
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPET 392
+ + L +DE + LDS + + +L ++KG TTL+ S + A
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAHRLSTIVDA--- 204
Query: 393 YDLFDDIILISDGQIVYQG 411
D I I GQI G
Sbjct: 205 ----DKIYFIEKGQITGSG 219
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 37/218 (16%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETFA- 920
L +S +P + A G SG GK+T+ +L R Y +G I I G P +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RF---YQPTAGEITIDGQPIDNISLEN 73
Query: 921 ---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
+I G+ Q D T+ E+L Y L + E++ ++++L R
Sbjct: 74 WRSQI-GFVSQ-DSAIMAGTIRENLTYG----LEGDYTD-------EDLWQVLDLAFARS 120
Query: 978 ALVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1027
+ +P GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 121 FVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1028 RTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
+ + +++ GRT + H+ S IV+A D+++ +++G
Sbjct: 180 KAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 64/260 (24%)
Query: 829 LPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 888
L F+ I F+ + +S + + L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA-----------DGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94
Query: 889 TLM-------DVLAGRKTGGYISGSIMISGYPKKQETFA---RISGYCEQNDIHSPNVTV 938
T++ D+ SG I I G Q T A G Q D N T+
Sbjct: 95 TILRLLFRFYDI---------SSGCIRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDTI 144
Query: 939 YESLLY---SAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP----------GV 985
+++ Y +A +EV + + A++ P G+
Sbjct: 145 ADNIRYGRVTAGN---------------DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1045
LS +++R+ IA ++ P II +DE TS LD + ++ V RT + H
Sbjct: 190 K-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAH 247
Query: 1046 QPSIDIVEAFDELFLLKRGG 1065
+ S +V A D++ ++K G
Sbjct: 248 RLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 77/268 (28%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEF--- 226
L+DVS + PG+ L+GP +GK+T+L L D S SG + +G D+ +
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124
Query: 227 --------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
VPQ T + +D T+ + + + R E+ E AA
Sbjct: 125 SLRSHIGVVPQDTVLF---ND------TIADNIRY-GRVTA--GNDEV-------EAAA- 164
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG--ISGGQKKRV 336
+AA I+ T VG+ RG +SGG+K+RV
Sbjct: 165 -----------QAAGIHD-----------AIMAFPEGYRTQVGE---RGLKLSGGEKQRV 199
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAP 390
++ + +DE ++ LD+S I SL + + TT++ S + A
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVNA- 255
Query: 391 ETYDLFDDIILISDGQIVYQGPREHVLE 418
D I++I DG IV +G E +L
Sbjct: 256 ------DQILVIKDGCIVERGRHEALLS 277
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 9e-11
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARI 922
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 923 SGYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
Y E + D + +V + + E T++ I++ + A+
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFV---------FESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-04
Identities = 45/325 (13%), Positives = 95/325 (29%), Gaps = 87/325 (26%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
+L ++ R + GP GK+TL+ A+A +D F Q
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG----------------QVDGFPTQE 493
Query: 231 TA--AYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Y+ D + +V + + + E + +
Sbjct: 494 ECRTVYVEHDIDGTHSDTSVLDFV-----FESGVGTKEAIKD------------------ 530
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
L G D M+ + +SGG K ++ ++ A
Sbjct: 531 ------------------KLIEFGFT---DEMI-AMPISALSGGWKMKLALARAVLRNAD 568
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI-----SLLQPAPETYDLFDDIILI 402
L +DE + LD+ +VN L T++ L ++ + II
Sbjct: 569 ILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLD------NVCEYIINY 618
Query: 403 SDGQIV-YQGP-------REHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKE 454
++ Y+G + + + + +L+ V +++ + E
Sbjct: 619 EGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNME 678
Query: 455 EPYRFVTVKEFADAFQVFYMGQKVG 479
Y + + D + ++
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIA 703
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGSIMISGYPKKQETFA-- 920
L ++ G AL+G +G+GK+T+ +L R Y G I I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 921 -RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VMELVELNPLR-Q 977
I G Q D N T+ ++LY EV T+ + + + L P +
Sbjct: 92 RSIIGIVPQ-DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL----PKKWD 146
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
+VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + +
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKN 204
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
RT++ H+ S I A + + LL +G
Sbjct: 205 RTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 54/271 (19%), Positives = 104/271 (38%), Gaps = 84/271 (30%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR---VSGRVTYNGHDMDEF 226
LK ++ I G L+G SGK+T+ L R G + G +++++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNVNKY 86
Query: 227 -----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
VPQ T + ++ T++ + + G E+ + K
Sbjct: 87 NRNSIRSIIGIVPQDTILF---NE------TIKYNILY-------GKLDATDEEVIKATK 130
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQK 333
+A + F I L DT+VG+ +G+ SGG++
Sbjct: 131 SA------QLYDF--------------------IEALPKKWDTIVGN---KGMKLSGGER 161
Query: 334 KRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQ 387
+R+ ++ + + DE ++ LDS T + ++ + K T +I S +
Sbjct: 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED---LRKNRTLIIIAHRLSTIS 218
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLE 418
A + IIL++ G+IV +G + +L+
Sbjct: 219 SA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 57/264 (21%), Positives = 105/264 (39%), Gaps = 79/264 (29%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGSIMIS 910
D V+L+ ++ + + G + ++G SG+GK+TL G+ ++I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 911 GYPKK---------------QET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLE 953
G+ Q+ R ++ +++ +
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA-------- 106
Query: 954 VDSPTRKMFIEEVMELVEL-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELV 1003
+ E+V+ +L + LR+ +VG G LS QR+R+ IA LV
Sbjct: 107 NPGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 1004 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063
NP I+ DE TS LD + ++MR + GRTV+ H+ S + A D + ++++
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-VKNA-DRIIVMEK 218
Query: 1064 GGQEIYVGSLGRHSSHLIKYFEGI 1087
G + G+H L+ E +
Sbjct: 219 GK----IVEQGKHKE-LLSEPESL 237
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 75/260 (28%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRVTYNGHDM 223
IL +++ I+ G + ++G SGK+TL L+ R +G+V +GHD+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---------QRFYIPENGQVLIDGHDL 73
Query: 224 DEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
P R + Q DN + ++ + ++ +
Sbjct: 74 ALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------N 107
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGI--SGGQKKRVT 337
P ++ + AA + + D+I ++ G + T+VG+ +G SGGQ++R+
Sbjct: 108 PGMSVEKVIYAA-----KLAGAHDFISELREGYN----TIVGE---QGAGLSGGQRQRIA 155
Query: 338 TGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPE 391
+V + L DE ++ LD + I+ ++ + I KG T +I S ++ A
Sbjct: 156 IARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAHRLSTVKNA-- 210
Query: 392 TYDLFDDIILISDGQIVYQG 411
D II++ G+IV QG
Sbjct: 211 -----DRIIVMEKGKIVEQG 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 61/296 (20%), Positives = 104/296 (35%), Gaps = 96/296 (32%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
L ++ I G + ++G GK++LL AL ++D +V G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP---DPDIDV 287
+ AY+ Q I ++RE + F G + E I+ PD+++
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLEE----PYYRSV--IQACALLPDLEI 112
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQKKRVTTGEMMVGP 345
TE +G+ +G+ SGGQK+RV+
Sbjct: 113 LPSGDRTE------------------------IGE---KGVNLSGGQKQRVSL------- 138
Query: 346 AQAL-------FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI------SLLQPAPET 392
A+A+ D+ + +D+ I ++ +LK T I S L
Sbjct: 139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV--- 195
Query: 393 YDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQ 448
D II++S G+I G + +L + A+FL+ S
Sbjct: 196 ----DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 45/215 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
LNG++ + G L A++G G GK++L+ L K G + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 922 ISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LR- 976
++ Y Q N ++ E++L+ + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 977 -----QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1030
+ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1031 -RNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ +T + H + + D + ++ G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYP-KKQETFA 920
+ GVS R G + L+G SG+GKTT++ ++AG R T G + I G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGDVWIGGKRVTDLPPQK 86
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
R G QN ++TVY+++ + L + V EL+ +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSF------GLREKRVPKDEMDARVRELLRF-------M 133
Query: 981 GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
++ VS IR G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 229 QRTAAYISQHD---NHIGEMTVRETLAFSARCQGVGSR------HEML 267
+R + Q+ H MTV + ++F R + V E+L
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPKDEMDARVRELL 130
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 45/178 (25%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
LN +S + PG + ++G SG GKTTL+ LAG + SG I +SG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KT 67
Query: 922 ISGYC-----EQNDIHS--------PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
I + + P++TVY ++ Y L + +
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY------GLGNGKGRTAQERQRIEA 121
Query: 969 LVELNPLRQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
++EL G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 122 MLEL-------TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDE---F 226
+L D+S + PG + ++G GKTTLL LAG SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 227 VP--QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSR------HEMLS 268
+P +R Y+ Q H +TV +A+ + ML
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 41/212 (19%)
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMIS 910
R V +L G++ + G AL+G SG GK+T + ++ Y + G + I
Sbjct: 400 RKEV-----QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSID 450
Query: 911 GYPKKQETF----ARISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFI 963
G + I G Q P T+ E++ Y + T I
Sbjct: 451 GQDIRTINVRYLREII-GVVSQE----PVLFATTIAENIRYGR--------EDVTMDE-I 496
Query: 964 EEVMELVELNPLRQAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
E+ ++ L VG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 1017 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1048
LD + A+V + GRT + H+ S
Sbjct: 556 ALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 32/215 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETFAR 921
L G+S + G AL+G SG GK+T++ +L R Y ++GS+ + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RF---YDPMAGSVFLDGKEIKQ---LN 1101
Query: 922 ISGYCEQNDIHS--P---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
+ Q I S P + ++ E++ Y R+ + I + ++
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEANIHQFI 1154
Query: 977 QAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
+L VG G LS Q++R+ IA LV P I+ +DE TS LD + +V
Sbjct: 1155 DSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + GRT + H+ S I A D + +++ G
Sbjct: 1214 L-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 72/272 (26%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLR----VSGRVTY 218
PSRK + ILK ++ ++ G+ L+G GK+T + + R + G V+
Sbjct: 398 PSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM-------QRLYDPLDGMVSI 449
Query: 219 NGHDMDEFVPQ--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
+G D+ + R +SQ + + T+ E + + G + E+ EK
Sbjct: 450 DGQDIRTINVRYLREIIGVVSQ-EPVLFATTIAENIRY-------GREDVTMDEI---EK 498
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRGI--SGGQ 332
A K A A D+I+K+ DT+VG+ RG SGGQ
Sbjct: 499 AV------------KEA-----NAY---DFIMKLPHQF----DTLVGE---RGAQLSGGQ 531
Query: 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLL 386
K+R+ +V + L +DE ++ LD+ + + +L + +G TT++ S +
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK---AREGRTTIVIAHRLSTV 588
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVLE 418
+ A D I G IV QG + ++
Sbjct: 589 RNA-------DVIAGFDGGVIVEQGNHDELMR 613
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 76/228 (33%)
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMIS 910
P V +L G++ PG +TAL+G +G+GK+T+ +L Y G +++
Sbjct: 29 HPNV-----QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NL---YQPTGGKVLLD 79
Query: 911 GYPKK---------------QET--FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLE 953
G P QE F R + E++ Y
Sbjct: 80 GEPLVQYDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL------- 117
Query: 954 VDSPTRKMFIEEVMELVELNPLRQA---------------LVGLPGVSGLSTEQRKRLTI 998
+PT EE+ + ++ VG G LS QR+ + +
Sbjct: 118 TRTPTM----EEITAVA-----MESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVAL 167
Query: 999 AVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1045
A L+ P ++ +D TS LDA V R + + RTV+
Sbjct: 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 81/271 (29%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRV 216
P+ +L+ ++ + PG++T L+GP SGK+T+ LL G+V
Sbjct: 27 PNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL---------QNLYQPTGGKV 76
Query: 217 TYNGHDMDEFVPQ---RTAAYISQHDNHIGE-----MTVRETLAFSARCQGVGSRHEMLS 268
+G + ++ A + Q E + RE +A+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY--------------- 115
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRG 327
G+ P ++ A S D+I G DT VG+ G
Sbjct: 116 ---------GLTRTPTMEEITAVA-----MESGAHDFISGFPQGY----DTEVGE---TG 154
Query: 328 I--SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLI-- 383
SGGQ++ V ++ + L +D ++ LD+ ++ L +S T L+
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214
Query: 384 ---SLLQPAPETYDLFDDIILISDGQIVYQG 411
SL + A I+ + +G + QG
Sbjct: 215 QQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 878 ALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQETFARISGYCEQNDIHS 933
L+G +GAGK+ ++++AG + G ++G+ + P++ R G+ Q+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-----RGIGFVPQDYALF 82
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
P+++VY ++ Y LR V+ R + E+ E + + L + LS +R
Sbjct: 83 PHLSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGER 132
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDAR 1021
+R+ +A LV P ++ +DEP S +D +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 79/264 (29%)
Query: 187 LLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-QRTAAYISQ------HD 239
LLGP +GK+ L +AG + G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 240 NHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEA 299
++V +A+ G R+ E RR +
Sbjct: 85 -----LSVYRNIAY-------GLRNVERVERDRRVREM---------------------- 110
Query: 300 SVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLD 359
+ LG+ + D +SGG+++RV +V + L +DE + +D
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 360 SSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD------LFDDIILISDGQIVYQGPR 413
T ++ LR + ++ + T+D L D++ ++ +G+IV +G
Sbjct: 159 LKTKGVLMEELRF-VQREFDVPILHV------THDLIEAAMLADEVAVMLNGRIVEKGKL 211
Query: 414 EHVLEFFKFMGFECPKRKGVADFL 437
+ + K VA+FL
Sbjct: 212 KELFS---------AKNGEVAEFL 226
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISG-----YPKKQ 916
LN VS G + ++G SGAGK+TL+ + R T GS+++ G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 917 ETFARIS-GYCEQ--NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN 973
T AR G Q N + S TV+ ++ PLE+D+ + V EL+ L
Sbjct: 100 LTKARRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLSL- 150
Query: 974 PLRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ------VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 65/347 (18%), Positives = 114/347 (32%), Gaps = 107/347 (30%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRV--------SG 214
+ + L +VS + G++ ++G +GK+TL +R G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL-----------IRCVNLLERPTEG 83
Query: 215 RVTYNGHDMDEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLS 268
V +G ++ I QH N + TV +A + E
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDE--- 139
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328
+ + +L ++GL D+ + +
Sbjct: 140 ---VKRRV---------------------------TELLSLVGLGDKHDSYPSN-----L 164
Query: 329 SGGQKKRVTTGEMMVGPAQA-------LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
SGGQK+R V A+A L D+ ++ LD +TT I+ L+ I+ G T
Sbjct: 165 SGGQKQR-------VAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLGLT 216
Query: 382 --LISLLQPAPETY------DLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGV 433
LI T+ + D + +IS+G+++ Q V F PK
Sbjct: 217 ILLI--------THEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLA 260
Query: 434 ADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGD 480
F+Q E Y +E + + ++ + GQ V
Sbjct: 261 QKFIQSTLHLDIPEDY----QERLQAEPFTDCVPMLRLEFTGQSVDA 303
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKK 915
K+V L+ V+ G ++G SGAGKTT M ++AG + G Y ++ S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R G Q PN+T +E++ + ++ + +EEV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 976 -----RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 134 LNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 64/198 (32%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
L +V+ I G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 230 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
D IG +T E +AF +
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQKKR 335
+I ++ A KIL + +L R +SG Q++R
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDIH---------HVLNHFPRELSGAQQQR 148
Query: 336 VTTGEMMVGPAQALFMDE 353
V +V L +DE
Sbjct: 149 VALARALVKDPSLLLLDE 166
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 57/232 (24%)
Query: 835 SITFD--EIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 892
+T Y+ +L +S + PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGN------------AIL-ENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 893 VLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHS-------PNVTVY--ESLL 943
G I I G S V + +
Sbjct: 66 AFLRLL---NTEGEIQIDGV-----------------SWDSITLEQWRKAFGVIPQKVFI 105
Query: 944 YSAWLRL---PLEVDSPTRKMFIEEVMELVELNPLRQALVG------LPGVSGLSTEQRK 994
+S R P S I +V + V L + + G + G LS ++
Sbjct: 106 FSGTFRKNLDPNAAHSDQE---IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162
Query: 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046
+ +A +++ I+ +DEP++ LD I+ RT++ TV+ +
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
+K + + G++ L+G +GKTT L A+AG + + G++ +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 231 TA----AYISQHDNHIGEMTVRETL 251
A + + E+TV E L
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENL 102
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 851 MMRPGVLE--------DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 900
M+ VLE + + G+ G + L+G +GAGKTT + +AG R
Sbjct: 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ- 59
Query: 901 GYISGSIMISGYPKKQETFARISGYCEQNDIHSP-------NVTVYESLLYSAWLRLPLE 953
G I+ +G + I P +TVYE+L+ A+ R
Sbjct: 60 ---KGKIIFNGQDITNKPAHVI---NRMGIALVPEGRRIFPELTVYENLMMGAYNRK--- 110
Query: 954 VDSPTRKMFIEEVMELV-ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012
D K +E + L L + L G LS +++ L I L++ P ++ MD
Sbjct: 111 -DKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMD 164
Query: 1013 EPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
EP+ GL + V ++ G T+
Sbjct: 165 EPSLGLAPILVSEVFEVIQKINQEGTTI 192
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 94/276 (34%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
+LKD++ I G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP---DPDIDV 287
++ SQ + I T++E + F G ++ R IK + DI
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI--SGGQKKRVTTGEMMVGP 345
F + +G+ GI SGGQ+ R++
Sbjct: 116 FAEKDNIV------------------------LGE---GGITLSGGQRARISL------- 141
Query: 346 AQAL-------FMDEISTGLDSSTTFQIVNSLRQSIH-ILKGTTLI------SLLQPAPE 391
A+A+ +D LD T +I + ++ T I L+ A
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFE---SCVCKLMANKTRILVTSKMEHLKKA-- 196
Query: 392 TYDLFDDIILISDGQIVYQGPREHVL----EFFKFM 423
D I+++ +G + G + +F +
Sbjct: 197 -----DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 922 ISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LR- 976
IS +C Q T+ E++++ + V++ +L +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 977 -----QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ +T + + ++ ++ D++ +L G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGY------PKK 915
L+ +S G ++G +GAGKT ++++AG SG I++ G P+K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRILLDGKDVTDLSPEK 71
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE-VMELVELNP 974
+ QN P++ V ++L + + + +K+ + V++
Sbjct: 72 -----HDIAFVYQNYSLFPHMNVKKNLEF------GMRM----KKIKDPKRVLDTARD-- 114
Query: 975 LRQALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 -----LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP- 228
L ++S + G ++LGP +GKT L +AG SGR+ +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 229 QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSR---HEML 267
+ A++ Q H M V++ L F R + + +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKIKDPKRVLDTA 112
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKKQETFA- 920
L ++ G AL+G SG+GK+T+ ++ T Y G I++ G+ ++ T A
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLAS 414
Query: 921 --RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEV---------MEL 969
Q ++H N TV ++ Y+ + +R E++ M+
Sbjct: 415 LRNQVALVSQ-NVHLFNDTVANNIAYA-------RTEEYSR----EQIEEAARMAYAMDF 462
Query: 970 VELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
+ ++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 463 INKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-06
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 74/259 (28%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRVTYNGHDMD 224
L++++ I G+ L+G SGK+T+ L+ R G + +GHD+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLIT---------RFYDIDEGHILMDGHDLR 408
Query: 225 EFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
E+ A +SQ + H+ TV +A++ SR ++ E+AA
Sbjct: 409 EYTLASLRNQVALVSQ-NVHLFNDTVANNIAYA--RTEEYSREQI-------EEAA---- 454
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRG--ISGGQKKRVTT 338
+ A D+I K+ GL DT++G+ G +SGGQ++R+
Sbjct: 455 --------RMAY--------AMDFINKMDNGL----DTIIGE---NGVLLSGGQRQRIAI 491
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPET 392
++ + L +DE ++ LD+ + I +L + K T+L+ S ++ A
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALD---ELQKNRTSLVIAHRLSTIEQA--- 545
Query: 393 YDLFDDIILISDGQIVYQG 411
D+I+++ DG IV +G
Sbjct: 546 ----DEIVVVEDGIIVERG 560
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 5e-07
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 988 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1042 CTIHQPSIDIVEAFDELFLLKRGGQEIYV 1070
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 74/259 (28%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRVTYNGHDMD 224
L VS I G+ L+G SGK+T+ L R SG + +GHD+
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT---------RFYDVDSGSICLDGHDVR 408
Query: 225 EFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
++ R A +SQ + H+ T+ +A+ +
Sbjct: 409 DYKLTNLRRHFALVSQ-NVHLFNDTIANNIAY------------------------AAEG 443
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLRG--ISGGQKKRVTT 338
+ + +AA + ++I + GL DT++G+ G +SGGQ++RV
Sbjct: 444 EYTREQIEQAA-----RQAHAMEFIENMPQGL----DTVIGE---NGTSLSGGQRQRVAI 491
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI-----SLLQPAPET 392
++ A L +DE ++ LD+ + I +L + K T L+ S ++ A
Sbjct: 492 ARALLRDAPVLILDEATSALDTESERAIQAALD---ELQKNKTVLVIAHRLSTIEQA--- 545
Query: 393 YDLFDDIILISDGQIVYQG 411
D+I+++ +G+I+ +G
Sbjct: 546 ----DEILVVDEGEIIERG 560
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISGYPKK 915
++K L + VS + G AL+G SG+GK+T+ ++ T Y SGSI + G+ +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVR 408
Query: 916 QETFA---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEE------V 966
R Q ++H N T+ ++ Y+A E IE+
Sbjct: 409 DYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAAEGEYTREQ--------IEQAARQAHA 459
Query: 967 MELVELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
ME +E P ++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 460 MEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 59/205 (28%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-Q 229
IL+ +S + PG + ++GP SGK+TL LAG+ D + G V + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRHEMLSELSRREKAAGIKPDP 283
R I +AF Q GV ++ + + L+ G +
Sbjct: 94 RAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR-----GISGGQKKRVTT 338
D F + + +L + +++L G SGG+KKR
Sbjct: 136 RFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKR--- 172
Query: 339 GE----MMVGPAQALFMDEISTGLD 359
+ ++ P + +DE +GLD
Sbjct: 173 NDILQMAVLEPELCI-LDESDSGLD 196
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 58/200 (29%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISG---- 911
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y G++ G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 912 -----------------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW-----LR 949
YP E I G V+ L +A R
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNAVRSYR 129
Query: 950 LPLEVDSPTRKMFIEEVMELVELNP--LRQAL-VGLPGVSGLSTEQRKRLTIAVELVANP 1006
+D + +EE + L+++ L +++ VG G G ++KR I V P
Sbjct: 130 GQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQMAVLEP 183
Query: 1007 SIIFMDEPTSGLDARAAAIV 1026
+ +DE SGLD A +V
Sbjct: 184 ELCILDESDSGLDIDALKVV 203
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 97/291 (33%)
Query: 157 NSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG---KLDSSLRVS 213
+S++ +LKD++ I G++ + G +GKT+LL+ + G + ++ S
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 214 GRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRR 273
GR+++ Q ++I T++E + + R
Sbjct: 99 GRISF--------CSQN--SWI-MP------GTIKENIIGV----------SY--DEYRY 129
Query: 274 EKAAGIKP---DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI-- 328
IK + DI F + +G+ GI
Sbjct: 130 RSV--IKACQLEEDISKFAEKDNIV------------------------LGE---GGITL 160
Query: 329 SGGQKKRVTTGEMMVGPAQAL-------FMDEISTGLDSSTTFQIVNS-----LRQSIHI 376
SGGQ+ R++ A+A+ +D LD T +I S + I
Sbjct: 161 SGGQRARISL-------ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL----EFFKFM 423
L T+ + L+ A D I+++ +G + G + +F +
Sbjct: 214 LV-TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQNLRPDFSSKL 256
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 44/213 (20%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 922 ISGYCEQNDIHSP---NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LR- 976
IS +C Q + T+ E+++ ++ + V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 977 -----QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1032 NTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ +T + + ++ ++ D++ +L G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T L +++ I+ G LLGP SGK+TLL +AG + SG++ ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 230 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQKKRVTT 338
+ID ++ A K+L + D++L +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 339 GEMMVGPAQALFMDE 353
+V + L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 28/180 (15%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPK 914
LN ++ + G AL+G SG+GK+TL+ +AG + T G Y + PK
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 915 KQET---FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
+ F QN P++TVY+++ + LR + + EV +++
Sbjct: 74 DRNVGLVF--------QNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLH 122
Query: 972 LNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1029
++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 123 IDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 63/196 (32%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+ + VS ++ G LLGP GKTT LL LAG + SG + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 229 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
R + Q H MTV E +AF R + +
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRI--------------------S 106
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQKKRVT 337
+++ + A + L +D +L +SGGQ++RV
Sbjct: 107 KDEVEKRVVEIA--------------RKLLID---------NLLDRKPTQLSGGQQQRVA 143
Query: 338 TGEMMVGPAQALFMDE 353
+V + L DE
Sbjct: 144 LARALVKQPKVLLFDE 159
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 38/185 (20%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPK 914
K+ ++GVS + G AL+G SG GKTT + +LAG + T G Y ++ PK
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73
Query: 915 KQET---FARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
+E F QN P++TV+E++ + R + + + E+ +
Sbjct: 74 YREVGMVF--------QNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLL 122
Query: 972 LNPL-----RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA 1024
++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 123 IDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI- 171
Query: 1025 IVMRT 1029
MR
Sbjct: 172 --MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 36/204 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP-KKQETFARI 922
L GVS R G + +++G SG+GK+T + + + G+I+++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 923 SGYCEQNDIHS---------------PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVM 967
++N + ++TV E+++ + P++V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 968 ELVELNPLRQALVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIH 1045
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 63/195 (32%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T + ++ I+ G +LLGP GKTT L +AG + + GR+ + D+ P+
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81
Query: 230 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
R + + Q H MTV E +AF + + P
Sbjct: 82 DRNISMVFQSYAVWPH------MTVYENIAFPLKIKKF--------------------PK 115
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQKKRVTT 338
+ID ++ AA ++L + +E+L +SGGQ++RV
Sbjct: 116 DEIDKRVRWAA--------------ELLQI---------EELLNRYPAQLSGGQRQRVAV 152
Query: 339 GEMMVGPAQALFMDE 353
+V L MDE
Sbjct: 153 ARAIVVEPDVLLMDE 167
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 879 LMGVSGAGKTTLMDVLAG--RKTGG--YISGSIMISGYPKKQE---TFARISGYCEQNDI 931
L+G SG GKTT + ++AG T G Y + PK + F Q+
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--------QSYA 93
Query: 932 HSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991
P++TVYE++ + ++ + + EL+++ L L P LS
Sbjct: 94 VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL---LNRYPA--QLSGG 145
Query: 992 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1029
QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 52/199 (26%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGSIMISG---- 911
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y G I++ G
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 912 -----------------YPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEV 954
YP E + G VT+ L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREV 113
Query: 955 DSPTRKMFIEEVMELVELNP--LRQAL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1011
+++ +EL++ + L + L G G G ++KR I LV P+ +
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVL 167
Query: 1012 DEPTSGLDARAAAIVMRTV 1030
DE SGLD A +V R V
Sbjct: 168 DETDSGLDIDALKVVARGV 186
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 57/202 (28%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-Q 229
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G ++ E P +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRHEMLSELSRREKAAGIKPDP 283
R + LAF Q GV + L R A + +
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGV-TIANFL----RLALQAKLGREV 113
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR-----GISGGQKKRVTT 338
+ F L++L D + L G SGG+KKR
Sbjct: 114 GVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNEI 154
Query: 339 GEM-MVGPAQALFMDEISTGLD 359
++ ++ P A+ +DE +GLD
Sbjct: 155 LQLLVLEPTYAV-LDETDSGLD 175
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 44/202 (21%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L G++ R G + ++G SG+GK+T + L + + G I+I G K +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK------ 91
Query: 924 GYCEQNDIHS---------------PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME 968
+++ P++TV ++ + P++V R+ + ME
Sbjct: 92 ----DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAME 142
Query: 969 LVELNPLRQALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
L++ VGL LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 143 LLDK-------VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
Query: 1024 AIVMRTVRNTVDTGRTVVCTIH 1045
V+ ++ + G T+V H
Sbjct: 196 GEVLSVMKQLANEGMTMVVVTH 217
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 69/201 (34%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSS---LRVSGRVTYNGHDMDEF 226
T ++++S ++ G +LLGP GKTT L +AG + S + + ++ + F
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV-ADPEKGIF 75
Query: 227 VP----------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
VP Q A Y H MTV + +AF + + V
Sbjct: 76 VPPKDRDIAMVFQSYALY--PH------MTVYDNIAFPLKLRKV---------------- 111
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML----RGISGGQ 332
P +ID ++ A ++LGL E+L R +SGGQ
Sbjct: 112 ----PRQEIDQRVREVA--------------ELLGL---------TELLNRKPRELSGGQ 144
Query: 333 KKRVTTGEMMVGPAQALFMDE 353
++RV G +V Q MDE
Sbjct: 145 RQRVALGRAIVRKPQVFLMDE 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 879 LMGVSGAGKTTLMDVLAGRKTGGYIS-GSIMISGYPKKQETFARISGYCE---------- 927
L+G SG GKTT + ++AG + S G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 928 QNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987
Q+ P++TVY+++ + LR +V + EV EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTEL---LNRKPR--E 139
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1029
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 91/273 (33%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTL--LLALAGKLDSSLR----VSGRVTY 218
ILKD++ I G +G GK+TL L+ R SG++
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP---------RFYDVTSGQILI 400
Query: 219 NGHDMDEFVPQRTAAYISQHD--NHIGEM---------TVRETLAFSARCQGVGSRHEML 267
+GH++ + N IG + TV+E +
Sbjct: 401 DGHNIKD---------FLTGSLRNQIGLVQQDNILFSDTVKENILLG------------- 438
Query: 268 SELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKI-LGLDVCADTMVGDEMLR 326
+P + ++AA + + D+I+ + G D T VG+ R
Sbjct: 439 ------------RPTATDEEVVEAA-----KMANAHDFIMNLPQGYD----TEVGE---R 474
Query: 327 G--ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKG-TTLI 383
G +SGGQK+R++ + + L +DE ++ LD + I +L + K TTLI
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTLI 531
Query: 384 -----SLLQPAPETYDLFDDIILISDGQIVYQG 411
S + A D I++I +G IV G
Sbjct: 532 VAHRLSTITHA-------DKIVVIENGHIVETG 557
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVE 1053
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1054 AFDELFLLKRGG 1065
A D + +
Sbjct: 128 AADHVIRISLEN 139
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 175 VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAY 234
+ ++ G + L+ P +GK+ L L LA +++G +P Y
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLA------AQIAGGPDLLEV---GELPTGPVIY 73
Query: 235 ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAAT 294
+ E R +G+ S R+ A G+ P I A
Sbjct: 74 LP------AEDPPTA---IHHRLHALGAHL---SAEERQAVADGLLIQPLIGSLPNIMAP 121
Query: 295 EGQEASVVTDYILKILGLDVCADTMVGDE 323
E + +++ LD + +E
Sbjct: 122 EWFDGLKRAAEGRRLMVLDTLRRFHIEEE 150
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1433 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-18 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-17 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-05 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 1e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 6e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 112 bits (281), Expect = 4e-28
Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 52/270 (19%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
T + ++ I+ G +LLGP GKTT L +AG + + GR+ + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 229 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
R + + Q MTV E +AF + + + E ++
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDE------IDKRV----------- 117
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+ ++L ++ + +SGGQ++RV +V
Sbjct: 118 ----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L MDE + LD+ + +++ + T I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 408 VYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+ G V + P VA F+
Sbjct: 216 LQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 23/213 (10%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTY 72
Query: 917 -ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R Q+ P++TVYE++ + ++ + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1034
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
T + H D VEA D + ++ RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 6e-27
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 18/213 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFAR 921
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLR-------LPLEVDSPTRKMFIEEVMELVELNP 974
Q +TV E+LL L + P + +E+ +++E
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 975 LRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 1035 DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
G T + H + D L+++ G
Sbjct: 198 AKGITFLIIEH----RLDIVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (259), Expect = 4e-25
Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 35/254 (13%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 229 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPD 284
Q + EMTV E L C G + + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 126
Query: 285 IDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVG 344
M A + IL+ L L D G+ +SGGQ K V G ++
Sbjct: 127 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 345 PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404
+ + MDE G+ I N + + KG T + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 405 GQIVYQGPREHVLE 418
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (271), Expect = 8e-27
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 27/228 (11%)
Query: 851 MMRPGVLE--------DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 900
M+ VLE + + G+ G + L+G +GAGKTT + +AG R
Sbjct: 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
Query: 901 GYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRK 960
G I + + P +TVYE+L+ A+ R D K
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIK 116
Query: 961 MFIEEVMEL-VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+E + L L + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 117 RDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 1020 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
+ V ++ G T++ + + A ++L+ G
Sbjct: 172 PILVSEVFEVIQKINQEGTTILLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 42/251 (16%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD-SSLRVSGRVTYNGHDMDEFV 227
+ +K + + G++ L+G +GKTT L A+AG + ++ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+ A + + E+TV E L A + + E + P
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWIFSLFP------ 127
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
L + G +SGG+++ + G ++ +
Sbjct: 128 -----------------------RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L MDE S GL ++ +++ +GTT++ + Q A + ++ GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 408 VYQGPREHVLE 418
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 106 bits (267), Expect = 2e-26
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 12/216 (5%)
Query: 855 GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISG 911
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +I +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 912 YPKKQETFARIS--GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL 969
+ T R G+ Q P +T E++ + + R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 970 VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1029
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1030 VRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
++ + G+TVV H I++ + + LK G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 47/258 (18%), Positives = 96/258 (37%), Gaps = 49/258 (18%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
++ + LK+V+ I+ G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 223 MDEFVPQRTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275
++ ++ Q N I +T E + + G+ +S RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL-DVCADTMVGDEMLRGISGGQKK 334
A LK+ L + A+ +SGGQ++
Sbjct: 125 AL---------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQ 152
Query: 335 RVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYD 394
RV + + D+ + LDS T +I+ L++ ++ G T++ ++
Sbjct: 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVAR 210
Query: 395 LFDDIILISDGQIVYQGP 412
+ II + DG++ +
Sbjct: 211 FGERIIYLKDGEVEREEK 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 107 bits (268), Expect = 3e-26
Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 43/250 (17%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
ILKD++ I G +G GK+TL+ + D + SG++ +GH++ +F+
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 231 TAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
I Q DN + TV+E + G E+ K A
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------ 136
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
I+ L DT VG E +SGGQK+R++ + +
Sbjct: 137 --------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408
L +DE ++ LD + I +L + K T + ++ T D I++I +G IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIV 231
Query: 409 YQGPREHVLE 418
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 97.6 bits (243), Expect = 6e-23
Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 829 LPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 888
+ K I D +++ + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 889 TLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCE--QNDIHSPNVTVYESLLYSA 946
TL++++ SG I+I G+ K + Q D + TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 947 WLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL-VGLPGVSG-----LSTEQRKRLTIAV 1000
P D + E ++ + L G G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 1001 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFL 1060
+ NP I+ +DE TS LD + +I+ + + RT + H+ S + D++ +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVV 224
Query: 1061 LKRG 1064
++ G
Sbjct: 225 IENG 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (255), Expect = 4e-25
Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L ++ G + G +G GKTTL+ ++ + G I+ +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
+ + I ++V + L A L K I + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 122
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1042
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1043 TIHQPSI-DIVE 1053
+ + S D+ E
Sbjct: 182 SREELSYCDVNE 193
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 80.7 bits (199), Expect = 1e-17
Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 48/215 (22%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
+L+ ++ I G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 230 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
L+ + + L +S G +RV ++ A+
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLIS 384
+D+ +D + +++ S+ + I KG +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (255), Expect = 2e-24
Identities = 38/201 (18%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARIS 923
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
+C Q P T+ E++++ E + + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1043
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1044 IHQPSIDIVEAFDELFLLKRG 1064
+ + D++ +L +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.7 bits (243), Expect = 1e-22
Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 60/281 (21%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR 230
+LK+++ I G M + G SGKT+LL+ + G+L++S G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
+ I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
I +T++G+ + +SGGQ+ R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 351 MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQ 410
+D LD T Q+ S ++ T I L+ E D I+++ G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 411 GPREHVL--------EFFKFMGFECPKRKGVADFLQEVTSR 443
G + + + F+ + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (251), Expect = 3e-24
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQ 916
K +L G+S G + L+G +GAGKTT + +++ + + G ++ + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR 976
++ Y + N+ E L + A S + +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.1 bits (231), Expect = 1e-21
Identities = 60/275 (21%), Positives = 95/275 (34%), Gaps = 54/275 (19%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
ILK +S I G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 229 Q--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
+ + +Y+ + M E L F A S E
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------IEEMV---------- 114
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ +I GL V S G +++ ++
Sbjct: 115 -----------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ +DE ++GLD ++ L+Q T L+S E L D I LI +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGT 210
Query: 407 IVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVT 441
IV G E + E K + + + +EV
Sbjct: 211 IVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (252), Expect = 4e-24
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 39/224 (17%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETFA 920
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 921 RIS-----------GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL 969
Q+ ++TV E+++ P++V ++ E ++
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-----APIQVLGLSKHDARERALKY 132
Query: 970 VELNPLRQALVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
+ VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 133 LAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 1024 AIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
V+R ++ + G+T+V H ++ A + L +G
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 93.4 bits (232), Expect = 2e-21
Identities = 56/286 (19%), Positives = 100/286 (34%), Gaps = 66/286 (23%)
Query: 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP 228
+LK VS R G + ++G SGK+T L + S G + NG +++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 229 Q----------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSR 272
+ + QH N MTV E + + S+H+
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------A 125
Query: 273 REKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQ 332
RE+A L +G+D A + +SGGQ
Sbjct: 126 RERA---------------------------LKYLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPET 392
++RV+ + L DE ++ LD +++ ++Q +G T++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 393 YDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQ 438
+ +I + G+I +G E V F P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99 bits (249), Expect = 6e-24
Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 57/280 (20%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
+ + L +VS + G++ ++G +GK+TL+ + + G V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 223 MDEFVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276
+ I QH N + TV +A + E + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDE------VKRRV 121
Query: 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRV 336
+L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 337 TTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLF 396
+ + L DE ++ LD +TT I+ L + I+ G T++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 397 DDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADF 436
D + +IS+G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 6e-23
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY------PKKQE 917
LN VS G + ++G SGAGK+TL+ + + GS+++ G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELT 78
Query: 918 TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R G Q+ + TV+ ++ L K + E++ LV L
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1036
+ S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 136 SYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 1037 GRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
G T++ H +D+V+ D + ++ G
Sbjct: 191 GLTILLITH--EMDVVKRICDCVAVISNG 217
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.2 bits (247), Expect = 2e-23
Identities = 53/259 (20%), Positives = 104/259 (40%), Gaps = 43/259 (16%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P+R +L+ ++ +RPG +T L+GP SGK+T+ L + G++ +G
Sbjct: 22 PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKP 77
Query: 223 MDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
+ ++ + R A + Q + + +++E +A+ G+
Sbjct: 78 LPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GL 112
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
P ++ AA G I GL DT V E +SGGQ++ V
Sbjct: 113 TQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVD-EAGSQLSGGQRQAVALA 163
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399
++ L +D+ ++ LD+++ Q+ L +S + L+ + D I
Sbjct: 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHI 221
Query: 400 ILISDGQIVYQGPREHVLE 418
+ + G I G + ++E
Sbjct: 222 LFLEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (224), Expect = 2e-20
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETFA 920
L G++ RPG +TAL+G +G+GK+T+ +L G +++ G P +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
R Q + ++ E++ Y + +E + + P
Sbjct: 88 RQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTE 144
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1039
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRG 1064
V+ S +VE D + L+ G
Sbjct: 205 VLLITQHLS--LVEQADHILFLEGG 227
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 2e-23
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 23/232 (9%)
Query: 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 895
ITF I + D V+L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
Query: 896 GRKTGGYISGSIMISGYP---KKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL 952
+G ++I G+ R G Q D N ++ +++ + +
Sbjct: 51 RFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGM 104
Query: 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012
V+ + + + + +GLS QR+R+ IA LV NP I+ D
Sbjct: 105 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 1013 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
E TS LD + ++MR + + GRTV+ H+ S V+ D + ++++G
Sbjct: 165 EATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 45/251 (17%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ- 229
IL +++ I+ G + ++G SGK+TL + +G+V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 230 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
R + Q DN + ++ + ++ + + ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAG--------- 117
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+ + E G+SGGQ++R+ +V +
Sbjct: 118 ------------------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L DE ++ LD + I+ ++ + I KG T+I + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 408 VYQGPREHVLE 418
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 4e-23
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP---KKQETFA 920
L +SG R G + L+G +GAGK+TL+ +AG +G GSI +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
Y Q V+ L + TR + +V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 981 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G +V + H + + +LLK G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 7e-19
Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
T L +SG +R G + L+GP +GK+TLL +AG G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 230 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ + + + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 347 QA-------LFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399
L +DE LD + + L +G ++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 400 ILISDGQIVYQGPREHVLE 418
L+ G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.5 bits (240), Expect = 1e-22
Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 11/204 (5%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFA 920
L ++ G AL+G SG+GK+T+ ++ G I++ G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
QN + +++ R + M+ + +
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 204
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRG 1064
+ H+ S +E DE+ +++ G
Sbjct: 205 LVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 92.6 bits (230), Expect = 3e-21
Identities = 50/259 (19%), Positives = 101/259 (38%), Gaps = 46/259 (17%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222
P R+ L++++ I G+ L+G SGK+T+ + D G + +GHD
Sbjct: 24 PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHD 78
Query: 223 MDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGI 279
+ E+ + A +SQ+ + + + ++ + A
Sbjct: 79 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYA 131
Query: 280 KPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTG 339
I +D DT++G E +SGGQ++R+
Sbjct: 132 MDF--------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIA 164
Query: 340 EMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399
++ + L +DE ++ LD+ + I +L + + K T + ++ T + D+I
Sbjct: 165 RALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEI 220
Query: 400 ILISDGQIVYQGPREHVLE 418
+++ DG IV +G +L
Sbjct: 221 VVVEDGIIVERGTHSELLA 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.5 bits (222), Expect = 3e-20
Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 42/251 (16%)
Query: 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ 229
IL+D+S +P + GP GK+T+ L + +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 230 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
+ I D+ I T+RE L + + +L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
+T VG E ISGGQ++R+ + +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L +DE + LDS + + +L ++KG T + + T D I I GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 408 VYQGPREHVLE 418
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 2e-19
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 11/204 (5%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKKQETFA 920
L +S +P + A G SG GK+T+ +L + T G I+ I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
G+ Q+ T+ E+L Y E + VE P +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRG 1064
+ H+ S + D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 3e-20
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQET 918
++V+ ++ G +G SG GK+TL+ ++AG +T SG + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTP 68
Query: 919 FARIS-GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
A G Q+ P+++V E++ + L + +V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1036
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1037 GRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
GRT++ H D++ +L G
Sbjct: 181 GRTMIYVTH--DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 4e-20
Identities = 52/271 (19%), Positives = 97/271 (35%), Gaps = 52/271 (19%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
+ + KD++ I G + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 228 PQRTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV-------INQRV---------- 111
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
+ + ++L L D +SGGQ++RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+DE + LD++ Q+ +H G T+I + E L D I+++ G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 407 IVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+ G + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.9 bits (212), Expect = 4e-19
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 57/279 (20%)
Query: 165 RKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMD 224
+K + L +V+ I G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 225 EFVPQ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278
R + Q +T E +AF + +S+ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRV-- 121
Query: 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTT 338
+ + KIL + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 339 GEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD 398
+V L +DE + LD+ +++ L T L+ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 399 IILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+ ++ G++V G E + ++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 83.2 bits (205), Expect = 4e-18
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 14/210 (6%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS--GSIMISGYPKK 915
K+V L+ V+ G ++G SGAGKTT M ++AG + G + ++ S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R G Q PN+T +E++ + PL +++ + V E+ ++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDI 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1034
L P LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 131 HHVLNHFPR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
G T++ H P+ DI D + +L +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 85.1 bits (210), Expect = 7e-19
Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 55/267 (20%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR- 230
L ++S + G ++LGP +GKT L +AG SGR+ +G D+ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
A++ Q+ + M V++ L F R + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------KDPKRV-------------- 108
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
+ L ++ D +SGG+++RV +V + L
Sbjct: 109 -------------LDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILL 150
Query: 351 MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQ 410
+DE + LD T + + +H T++ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 411 GPREHVLEFFKFMGFECPKRKGVADFL 437
G E + FE P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 3e-15
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 18/204 (8%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISG-YPKKQETFARI 922
L+ +S G ++G +GAGKT ++++AG SG I++ G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
+ QN P++ V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1041
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1042 CTIHQPSIDIVEAF-DELFLLKRG 1064
H D + ++ G
Sbjct: 183 HITH--DQTEARIMADRIAVVMDG 204
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.6 bits (209), Expect = 1e-18
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GSIMISGYPKK 915
++ + +S + G L+G SG GKTT + ++AG + G I G +++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 916 QETFARISG--YCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN 973
+ Q+ P++TVY+++ + LR +V + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 974 PLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1034 V-DTGRTVVCTIHQPSIDIVEAF---DELFLLKRG 1064
G T + H D VEA D + ++ RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.7 bits (204), Expect = 6e-18
Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 58/277 (20%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV 227
+T ++++S ++ G +LLGP GKTT L +AG + S G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 228 PQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIK 280
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE-------IDQRV---- 120
Query: 281 PDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGE 340
+ ++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 341 MMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400
+V Q MDE + LD + + + + + G T I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 401 LISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+++ G + G + V ++ P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 2e-14
Identities = 50/265 (18%), Positives = 89/265 (33%), Gaps = 56/265 (21%)
Query: 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTA- 232
+V +LLGP +GK+ L +AG + G V NG D+ P+R
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 233 AYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAA 292
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 293 ATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMD 352
+ + D +SGG+++RV +V + L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 353 EISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGP 412
E + +D T ++ LR L E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGK 210
Query: 413 REHVLEFFKFMGFECPKRKGVADFL 437
+ + K VA+FL
Sbjct: 211 LKELFS---------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.0 bits (163), Expect = 1e-12
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 873 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGSIMISGYPKKQETFARIS-GYCEQN 929
L+G +GAGK+ ++++AG + G + ++G R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD----RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 930 DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989
P+++VY ++ Y V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1048
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1049 IDIVEAFDELFLLKRGGQEIYVGS---LGRHSSHLIKYFEG----IRGVSKIKD 1095
+ DE+ ++ G+ + G L + + F + VSKI D
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 9e-06
Identities = 23/187 (12%), Positives = 38/187 (20%), Gaps = 35/187 (18%)
Query: 878 ALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVT 937
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 938 VYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLT 997
+ + S + V S + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 998 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDE 1057
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVH--PLVKE 148
Query: 1058 LFLLKRG 1064
+ L
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.7 bits (99), Expect = 9e-05
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 5/105 (4%)
Query: 186 LLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 245
++ G P GKTTL+ + +L + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 246 TVRETLAFSARCQGVGSRHEMLSELSRREK--AAGIKPDPDIDVF 288
+ T GV ++ + E+ K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/137 (13%), Positives = 33/137 (24%), Gaps = 3/137 (2%)
Query: 189 GPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248
+GKTTLL L L R H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILK 308
+ A E+ + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 309 ILGLDVCADTMVGDEML 325
L +D + D L
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 176 SGIIRPGRMTLLLGPPASGKTTLLL--ALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAA 233
G I G +T + G +GKT + A+ +L F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 234 YISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
++ ++ A + S + + A + D ++
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 132
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 0.001
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 944 YSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELV 1003
+A L + E + + L + G V+ L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 1004 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELF 1059
+DE + LD + +R + + + + E D L
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/149 (13%), Positives = 30/149 (20%), Gaps = 9/149 (6%)
Query: 176 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYI 235
G + +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 236 SQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATE 295
E T R +L +
Sbjct: 85 D------TEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEG 138
Query: 296 GQEASVVTDYILKILGLDVCADTMVGDEM 324
VV D + + + +
Sbjct: 139 NNIKLVVIDSLTSTFRNEYTGRGKLAERQ 167
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 0.003
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 179 IRPGRMTLLLGPPASGKTTLLLALAGKL-------DSSLRVSGRVTYNGHDM-DEFVPQR 230
+ G + L+ P +GK+ L L LA ++ + +G V Y + + R
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 85
Query: 231 TAAYISQHDNH 241
A +
Sbjct: 86 LHALGAHLSAE 96
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (88), Expect = 0.003
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 176 SGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGR 215
G + G +T L G +GK+ L LA L + G
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1433 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.43 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.2 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.07 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.76 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.64 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.53 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.02 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.0 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.96 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.8 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.69 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.65 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.57 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.5 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.36 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.36 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.28 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.18 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.18 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.06 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.01 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.95 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.93 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.92 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.89 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.85 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.85 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.83 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.81 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.79 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.79 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.77 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.76 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.76 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.75 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.73 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.7 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.7 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.66 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.66 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.65 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.62 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.58 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.56 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.53 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.46 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.46 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.45 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.42 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.38 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.37 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.34 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.33 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.33 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.31 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.3 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.29 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.29 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.27 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.26 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.26 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.24 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.22 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.22 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.2 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.2 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.2 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.18 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.18 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.16 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.15 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.15 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.14 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.14 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.14 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.13 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.12 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.1 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.1 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.09 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.08 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.08 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.05 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.03 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.02 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.02 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.01 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.96 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.96 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.96 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.94 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.94 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.93 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.92 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.92 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.91 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.91 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.91 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.89 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.86 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.84 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.83 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.8 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.78 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.76 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.74 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.71 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.68 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.62 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.57 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.57 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.55 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.55 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.52 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.51 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.49 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.47 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.45 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.45 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.42 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.41 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.41 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.38 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.38 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.35 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.27 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.24 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.22 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.21 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.21 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.18 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.13 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.03 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.02 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.01 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.98 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.98 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.96 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.96 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.9 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.89 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.85 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.85 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.84 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.75 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.74 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.74 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.73 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.72 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.71 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.7 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.66 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.66 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.65 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.61 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.59 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.58 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.54 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.54 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.49 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.46 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.45 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.45 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.43 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.42 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.4 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.39 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.39 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.39 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.38 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.36 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.36 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.31 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.27 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.18 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.04 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.01 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.0 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.99 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.93 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.9 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.87 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.84 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.84 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.81 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.74 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.74 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.72 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.71 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.67 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.67 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.67 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.66 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.64 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.62 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.61 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.52 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.52 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.49 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.41 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.41 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.39 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.39 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.35 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.34 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.32 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.29 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.27 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.23 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.23 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.22 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.22 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.16 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.16 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.14 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.12 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.08 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.04 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.02 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.96 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.92 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.84 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.79 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.75 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.75 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.72 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.72 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.67 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.67 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.66 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.65 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.65 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.53 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.52 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.5 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.42 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.39 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.33 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.32 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.27 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.26 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.23 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.2 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.1 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.1 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.06 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.04 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.02 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.9 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.86 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.81 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.79 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.78 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.7 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.68 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.59 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.49 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.46 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.44 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.4 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.26 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.18 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.13 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.1 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.06 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.95 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.85 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.79 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.76 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.67 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.66 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.54 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.5 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.4 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.36 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.13 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.96 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.93 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.93 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.93 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.92 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.85 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.81 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.68 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.49 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.35 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.2 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.19 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.03 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.0 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.78 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.6 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.59 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.5 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.49 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.47 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.17 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 88.11 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.89 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.62 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.54 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.49 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.29 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.03 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.91 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.79 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.43 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.32 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.15 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.1 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.1 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.63 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.36 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.33 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.11 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.92 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.82 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.75 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 84.01 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.8 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.51 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.07 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 80.36 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=335.62 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=178.5
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCC
Q ss_conf 53265201798948839999849999689999998559899999510999979507887645-22899727888899999
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 168 ~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lT 246 (1433)
..++|+|||+.+++||+++|+||||||||||+++++|.++|+ +|+|.+||.++++..+. +.++||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHH
T ss_conf 999981117788699899999899982999999996587888---88899999977888644432223433420264333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999987771078850123346229988529999997579999964223356689999999919974345534575567
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 VrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~ 326 (1433)
|+||+.|+..+++.. + .+....++.+++.++|++..|..+.
T Consensus 89 v~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----
T ss_conf 788978999875998----------8------------------------9999999999975788656648965-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 78656756899999980798485985698899999999999999999882298499998549114883318399962982
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~ 406 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+.. +++++.++|...++..++|+|++|.+|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 699999999999999703998899758887889889989999999998742-9879999489999999699999997999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999539657999
Q 000541 407 IVYQGPREHVLE 418 (1433)
Q Consensus 407 iv~~G~~~~~~~ 418 (1433)
++.+|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=330.47 Aligned_cols=207 Identities=25% Similarity=0.386 Sum_probs=176.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCH
Q ss_conf 3265201798948839999849999689999998559899999510999979507887645-228997278888999999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 247 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999877710788501233462299885299999975799999642233566899999999199743455345755677
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG 327 (1433)
Q Consensus 248 rEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~g 327 (1433)
+||+.|+++.++. ++. +....++.+++.+||++..|..+. .
T Consensus 96 ~enl~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKF----------PKD------------------------EIDKRVRWAAELLQIEELLNRYPA-----Q 136 (239)
T ss_dssp HHHHHTTCC--CC----------CHH------------------------HHHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHHCCC----------CHH------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 9999999987399----------999------------------------999999999987598556609954-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 86567568999999807984859856988999999999999999998822984999985491148833183999629829
Q 000541 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407 (1433)
Q Consensus 328 LSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~i 407 (1433)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.++++.... +++++.++|...++..++|+|++|.+|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999889999766404998243068866689899989999999998731-98079994899999986999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 99539657999
Q 000541 408 VYQGPREHVLE 418 (1433)
Q Consensus 408 v~~G~~~~~~~ 418 (1433)
+.+|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
T ss_conf 99859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=328.08 Aligned_cols=207 Identities=27% Similarity=0.389 Sum_probs=148.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-------CCEEEEECCCCCC
Q ss_conf 326520179894883999984999968999999855989999951099997950788764-------5228997278888
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP-------QRTAAYISQHDNH 241 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 241 (1433)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999877710788501233462299885299999975799999642233566899999999199743455345
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG 321 (1433)
++.+||+||+.|+.+.++.. +. +....++.+++.+||++..|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~----------~~------------------------e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVP----------RQ------------------------EIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHCCCHH
T ss_conf 31011667633068772999----------89------------------------999999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 75567786567568999999807984859856988999999999999999998822984999985491148833183999
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iiv 401 (1433)
.|||||||||+||++|+.+|+++++||||+|||..++.+|++.++++.+.. +++++.++|...++..++|+|++
T Consensus 139 -----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEE
T ss_conf -----499999999999999826998898258876569899989999999998636-98899995999999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 62982999539657999
Q 000541 402 ISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~~ 418 (1433)
|.+|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999859999982
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=328.24 Aligned_cols=223 Identities=25% Similarity=0.413 Sum_probs=182.7
Q ss_pred EEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 59951103899880488777881467789998653210545565555326520179894883999984999968999999
Q 000541 122 EVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLA 201 (1433)
Q Consensus 122 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~ 201 (1433)
+|+|+|+++.+.. ....+|+|||+.+++|+.++|+||||||||||+++
T Consensus 1 eI~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~l 48 (241)
T d2pmka1 1 DITFRNIRFRYKP--------------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48 (241)
T ss_dssp EEEEEEEEEESST--------------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEECC--------------------------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 9299999999089--------------------------------99603742489984999999999999989999999
Q ss_pred HHCCCCCCCCCCEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 855989999951099997950788764---52289972788889999999999987771078850123346229988529
Q 000541 202 LAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAG 278 (1433)
Q Consensus 202 LaG~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~ 278 (1433)
|+|.++|+ +|+|.+||.++.+... ++.++||+|++ +++..||+||+.|+..
T Consensus 49 l~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~~~~---------------------- 102 (241)
T d2pmka1 49 IQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDN-VLLNRSIIDNISLANP---------------------- 102 (241)
T ss_dssp HTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCTTSBHHHHHCTTST----------------------
T ss_pred HHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCC-CCCCCCCCCCCCCCCC----------------------
T ss_conf 97357888---889999999944002465535288982446-5578400035223575----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999757999996422335668999999991997434553457556778656756899999980798485985698899
Q 000541 279 IKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGL 358 (1433)
Q Consensus 279 i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgL 358 (1433)
+.+.+...+++...+. .+ .+..++...+|.+|+.+. .|||||||||+|||+++.+|++++||||||+|
T Consensus 103 ---~~~~~~~~~~~~~~~~-----~~---~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalARal~~~p~ililDEpts~L 170 (241)
T d2pmka1 103 ---GMSVEKVIYAAKLAGA-----HD---FISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170 (241)
T ss_dssp ---TCCHHHHHHHHHHHTC-----HH---HHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred ---CCCHHHHHHHHHHHHH-----HH---HHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf ---5438889999999755-----78---887632013443278788-66988989875443444165135564776555
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 999999999999999882298499998549114883318399962982999539657999
Q 000541 359 DSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 359 Ds~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~ 418 (1433)
|+.++.+|++.++++. ++.|++.++|.. +....+|+|++|++|+++++|++++++.
T Consensus 171 D~~~~~~i~~~l~~l~---~~~Tvi~itH~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 171 DYESEHVIMRNMHKIC---KGRTVIIIAHRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CHHHHHHHHHHHHHHH---TTSEEEEECSSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---CCCEEEEEECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9899999999999985---899899997889-9998499999998999999889999982
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=328.43 Aligned_cols=203 Identities=24% Similarity=0.364 Sum_probs=179.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 265201798948839999849999689999998559899999510999979507887645-2289972788889999999
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTVr 248 (1433)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..++ +.++||+|+..+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998777107885012334622998852999999757999996422335668999999991997434553457556778
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 Etl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gL 328 (1433)
||+.|+.+.++... ...++.+++.+||.+..|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HC
T ss_conf 88888776405538-------------------------------------9999999998256555758955-----47
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 65675689999998079848598569889999999999999999988229849999854911488331839996298299
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv 408 (1433)
||||||||+||++|+.+|++++|||||+|||+.++.++.+.++++.+. .+++++.++|...++.+++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 999840140304344367714434787679989999999999999864-7968999749999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 9539657999
Q 000541 409 YQGPREHVLE 418 (1433)
Q Consensus 409 ~~G~~~~~~~ 418 (1433)
++|+++++.+
T Consensus 208 ~~g~~~el~~ 217 (229)
T d3d31a2 208 QVGKPEEIFE 217 (229)
T ss_dssp EEECHHHHHS
T ss_pred EECCHHHHHH
T ss_conf 9869999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.01 Aligned_cols=205 Identities=24% Similarity=0.358 Sum_probs=109.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC------CEEEEECCCCCCC
Q ss_conf 3265201798948839999849999689999998559899999510999979507887645------2289972788889
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ------RTAAYISQHDNHI 242 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~------~~~~yv~Q~d~~~ 242 (1433)
..+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.++||+|+..++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89861505788699799998999898889999875886366---773288676852087555115541664302252227
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999998777107885012334622998852999999757999996422335668999999991997434553457
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~ 322 (1433)
+.+||+||+.|+.+..+... ++....++.+++.+||++..|..++
T Consensus 95 ~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~~- 139 (240)
T d3dhwc1 95 SSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS- 139 (240)
T ss_dssp TTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCBS-
T ss_pred CCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCCHH-
T ss_conf 99649999999999849998----------------------------------9999999999997699035548943-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 55677865675689999998079848598569889999999999999999988229849999854911488331839996
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL 402 (1433)
.|||||||||+||++|+.+|+++++||||+|||+.++.+|++.++++.+.. +++++.++|...++..++|+|++|
T Consensus 140 ----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~vl 214 (240)
T d3dhwc1 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (240)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEE
T ss_conf ----499999989998640105898687446556589888567999999998646-978999838999999869999999
Q ss_pred CCCEEEEECCHHHH
Q ss_conf 29829995396579
Q 000541 403 SDGQIVYQGPREHV 416 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~ 416 (1433)
.+|++++.|+++++
T Consensus 215 ~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 215 SNGELIEQDTVSEV 228 (240)
T ss_dssp ETTEEEEEEETTTT
T ss_pred ECCEEEEECCHHHH
T ss_conf 79999998799999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=328.37 Aligned_cols=208 Identities=22% Similarity=0.320 Sum_probs=148.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC-----C-CCEEEEECCCCCC
Q ss_conf 532652017989488399998499996899999985598999995109999795078876-----4-5228997278888
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFV-----P-QRTAAYISQHDNH 241 (1433)
Q Consensus 168 ~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~-----~-~~~~~yv~Q~d~~ 241 (1433)
...+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... . ++.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999877710788501233462299885299999975799999642233566899999999199743455345
Q 000541 242 IGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVG 321 (1433)
Q Consensus 242 ~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG 321 (1433)
+|.+||+||+.|+.+..+.. +. +....++.+++.+||++..|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMS----------KE------------------------EIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCC----------HH------------------------HHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 66665777766556761379----------99------------------------999999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 75567786567568999999807984859856988999999999999999998822984999985491148833183999
Q 000541 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 322 ~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iiv 401 (1433)
.|||||||||+||++|+.+|+++++||||+|||+.++.++++.++++.+.. +.+++.++|...++.+++|+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHCCEEEE
T ss_conf -----599999858998757760466145447866799899889989999998635-98799997999999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 62982999539657999
Q 000541 402 ISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 402 L~~G~iv~~G~~~~~~~ 418 (1433)
|.+|+++..|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999869999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=324.66 Aligned_cols=228 Identities=22% Similarity=0.380 Sum_probs=183.3
Q ss_pred EEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 15995110389988048877788146778999865321054556555532652017989488399998499996899999
Q 000541 121 IEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLL 200 (1433)
Q Consensus 121 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~ 200 (1433)
..|+|+|+++.+. .++...+|+|||+.+++|+.++|+||||||||||++
T Consensus 10 g~I~~~nvsf~Y~-------------------------------~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 58 (251)
T d1jj7a_ 10 GLVQFQDVSFAYP-------------------------------NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58 (251)
T ss_dssp CCEEEEEEEECCT-------------------------------TSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHH
T ss_pred CEEEEEEEEEECC-------------------------------CCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 3699999899889-------------------------------999997674438998499899999999984999999
Q ss_pred HHHCCCCCCCCCCEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98559899999510999979507887645---228997278888999999999998777107885012334622998852
Q 000541 201 ALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAA 277 (1433)
Q Consensus 201 ~LaG~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~ 277 (1433)
+|+|.++|+ +|+|.+||.++.+...+ +.++||+|++. ++..||+||+.|+....
T Consensus 59 li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~tv~eni~~g~~~~------------------- 115 (251)
T d1jj7a_ 59 LLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ-VFGRSLQENIAYGLTQK------------------- 115 (251)
T ss_dssp HHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCC-CCSSBHHHHHHCSCSSC-------------------
T ss_pred HHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHCCC-------------------
T ss_conf 986143787---6899889985311013788877654045650-02763465545421013-------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 99999975799999642233566899999999199743455345755677865675689999998079848598569889
Q 000541 278 GIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTG 357 (1433)
Q Consensus 278 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsg 357 (1433)
++.+...++.... ...+ .+.+|++..+|.+++.+. .||||||||++|||+++.+|++++|||||++
T Consensus 116 -----~~~~~~~~~~~~~-----~~~~---~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs~ 181 (251)
T d1jj7a_ 116 -----PTMEEITAAAVKS-----GAHS---FISGLPQGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATSA 181 (251)
T ss_dssp -----CCHHHHHHHHHHH-----TCHH---HHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred -----CHHHHHHHHHHHH-----HHHH---HHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf -----0278899999999-----8999---998561211136751676-6895470489986044568707871675765
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 9999999999999999882298499998549114883318399962982999539657999
Q 000541 358 LDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 358 LDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~ 418 (1433)
||+.++.+|++.++++.+.. ++|++.++|... ....+|+|++|++|+++++|+++++++
T Consensus 182 LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l~-~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 182 LDANSQLQVEQLLYESPERY-SRSVLLITQHLS-LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp CCHHHHHHHHHHHHTCGGGG-GCEEEEECSCHH-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 68536899999999976506-989999959799-998599999998999999889999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=327.62 Aligned_cols=230 Identities=24% Similarity=0.401 Sum_probs=185.5
Q ss_pred CCCCCCEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCC
Q ss_conf 99889315995110389988048877788146778999865321054556555532652017989488399998499996
Q 000541 115 GISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASG 194 (1433)
Q Consensus 115 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsG 194 (1433)
.++..+..|+|+|+++.+.. ...++|+|||+.+++|+.++|+||||||
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsG 56 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGGG 56 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTSS
T ss_pred CCCCCCCEEEEEEEEEEECC--------------------------------CCCCCEECEEEEECCCCEEEEECCCCCC
T ss_conf 77777887999988999599--------------------------------9976064438998399899998899980
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 8999999855989999951099997950788764---5228997278888999999999998777107885012334622
Q 000541 195 KTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271 (1433)
Q Consensus 195 KSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~ 271 (1433)
||||+++|+|.++|+ +|+|.++|.++++... ++.++||+|++ +++..||+||+.|+..
T Consensus 57 KSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~g~~--------------- 117 (255)
T d2hyda1 57 KSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN-ILFSDTVKENILLGRP--------------- 117 (255)
T ss_dssp HHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC-CCCSSBHHHHHGGGCS---------------
T ss_pred HHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCC-CCCCCCHHHHHHCCCC---------------
T ss_conf 999999997127863---000153998753078888634145651015-6899879999851586---------------
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99885299999975799999642233566899999999199743455345755677865675689999998079848598
Q 000541 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFM 351 (1433)
Q Consensus 272 ~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlll 351 (1433)
+.+.+...+++...+ ..+. +..|+++.||.+|+.+. .||||||||++|||+++.+|++++|
T Consensus 118 ----------~~~~~~~~~al~~~~-----l~~~---i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ilil 178 (255)
T d2hyda1 118 ----------TATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILIL 178 (255)
T ss_dssp ----------SCCHHHHHHHHHHTT-----CHHH---HHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ----------CCCHHHHHHHHHHHC-----CHHH---HHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf ----------799999999999969-----7999---97362420103338889-8499999999999998559989998
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 5698899999999999999999882298499998549114883318399962982999539657999
Q 000541 352 DEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 352 DEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~ 418 (1433)
||||++||..++..|++.++++. ++.|++.++|.. +....+|+|++|++|+++..|+++++++
T Consensus 179 DEpts~LD~~t~~~i~~~l~~l~---~~~TvI~itH~~-~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 179 DEATSALDLESESIIQEALDVLS---KDRTTLIVAHRL-STITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSSG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH---CCCEEEEEECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 37654479779999999999875---388899996899-9998599999998999999889999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=325.18 Aligned_cols=214 Identities=22% Similarity=0.355 Sum_probs=190.1
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++++|++.+++ ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 80-01233488961588789998889999987771299999936799999999999299642212136998888898889
Q 000541 915 KQ-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 915 ~~-~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqr 993 (1433)
.. ...+|.+|||+|+..++|++||+|++.|.+.++ ..+.++.+++++++++.++|.+.++..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 9999999996199767982999999999899999999998757-988999955888899997620558816959999849
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~ 1072 (1433)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.+. |.|+|+++|++. ++.+..|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 8
Q 000541 1073 L 1073 (1433)
Q Consensus 1073 ~ 1073 (1433)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=321.60 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=188.7
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++++|++++++ ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 800-------1233488961588789998889999987771299999936799999999999299642212136998888
Q 000541 915 KQE-------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG 987 (1433)
Q Consensus 915 ~~~-------~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~g 987 (1433)
... ..++.+|||+|+..++|.+||+|++.|...++. .+.++.+++++++++.++|.+.++..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 3566444245322551200221222310116676330687729---998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 8988899999999996199767982999999999899999999998757-988999955888899997620558816959
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~ 1066 (1433)
||||||||++||++|+.+|++|+|||||+|||+.+...+++.++++.+. |.|||+++|... ++....|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9998498
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~vy~G~~ 1073 (1433)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.82 Aligned_cols=213 Identities=25% Similarity=0.375 Sum_probs=187.1
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++++|++++++ ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-012334889615887899988899999877712999999367999999999992996422121369988888988899
Q 000541 916 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 916 ~-~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 994 (1433)
. ...+|.+|||+|+..+++.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 9999999961997679829999999998999999999987-579889999558888999976205588169599998498
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
|++||++|+.+|++|+|||||+|||+.++..+++.++++. +.|.|+|+++|.. .++.+..|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 999999970399889975888788988998999999999874298799994899-999996999999979-999998089
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=320.10 Aligned_cols=230 Identities=24% Similarity=0.407 Sum_probs=185.0
Q ss_pred CCCCCEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCH
Q ss_conf 98893159951103899880488777881467789998653210545565555326520179894883999984999968
Q 000541 116 ISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGK 195 (1433)
Q Consensus 116 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGK 195 (1433)
++-++.+++|+|+++.+.. ...++|+|||+.+++|+.++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred CCCCCEEEEEEEEEEEECC--------------------------------CCCCEEECEEEEECCCCEEEEECCCCCHH
T ss_conf 6778307999988999299--------------------------------99763533289985999999999999859
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9999998559899999510999979507887645---2289972788889999999999987771078850123346229
Q 000541 196 TTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSR 272 (1433)
Q Consensus 196 STLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~ 272 (1433)
|||+++|+|.++|+ +|+|.+||.++++.... +.++||+|++ +++..|+++|+.++...
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~~ti~~n~~~~~~~--------------- 115 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFNDTVANNIAYARTE--------------- 115 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCSSBHHHHHHTTTTS---------------
T ss_pred HHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCCCCHHHHHHHCCCC---------------
T ss_conf 99999986216888---468987880121110665420687995025-44786202433205722---------------
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98852999999757999996422335668999999991997434553457556778656756899999980798485985
Q 000541 273 REKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMD 352 (1433)
Q Consensus 273 ~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllD 352 (1433)
+.+.+...+++...+ ..+++-+ |+++.||.+|+.+. .|||||||||+|||+|+.+|++++||
T Consensus 116 ---------~~~~~~i~~a~~~~~-----l~~~i~~---l~~gl~t~~~~~~~-~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 116 ---------EYSREQIEEAARMAY-----AMDFINK---MDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp ---------CCCHHHHHHHHHTTT-----CHHHHHH---STTGGGSBCCTTSC-SSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ---------CCCHHHHHHHHHHHH-----HHHHHHH---CCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf ---------089999999999981-----7999973---55441014348889-84999999999999995499889951
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 698899999999999999999882298499998549114883318399962982999539657999
Q 000541 353 EISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 353 EptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~ 418 (1433)
||||+||..++..|++.++++.+ ++|++.++|... ....+|+|++|++|+|+++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~-~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK---NRTSLVIAHRLS-TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 64445898899999999987522---788999988799-998599999998999999889999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=318.35 Aligned_cols=219 Identities=22% Similarity=0.357 Sum_probs=136.8
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++++|++++++... ....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred CC---C---C-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 00---1---2-3348896158878999888999998777129999993679999999999929964-2212136998888
Q 000541 916 QE---T---F-ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-LRQALVGLPGVSG 987 (1433)
Q Consensus 916 ~~---~---~-~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~vg~~~~~g 987 (1433)
.. . + ++.+|||.|+..+.|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 8988899999999996199767982999999999899999999998757-988999955888899997620558816959
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~ 1066 (1433)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|+|+++|++ ++.+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9998498
Q 000541 1067 EIYVGSL 1073 (1433)
Q Consensus 1067 ~vy~G~~ 1073 (1433)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=321.57 Aligned_cols=216 Identities=26% Similarity=0.383 Sum_probs=189.3
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++.+|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 80------012334889615887899988899999877712999999367999999999992996422121369988888
Q 000541 915 KQ------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 915 ~~------~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~gl 988 (1433)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEE
Q ss_conf 98889999999999619976798299999999989999999999875-79889999558888999976205588169599
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQE 1067 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~ 1067 (1433)
|||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+ .|.|+|.++|.+. ++.+..|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 998498
Q 000541 1068 IYVGSL 1073 (1433)
Q Consensus 1068 vy~G~~ 1073 (1433)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=318.36 Aligned_cols=218 Identities=23% Similarity=0.302 Sum_probs=187.5
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++++|++.+++.. .....+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0123348896158878999888999998777129999993679999999999929964221213699888889
Q 000541 916 Q------ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLS 989 (1433)
Q Consensus 916 ~------~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glS 989 (1433)
. ..+++.+|||+|+..+++.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 88899999999996199767982999999999899999999998757-98899995588889999762055881695999
Q 000541 990 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 990 gGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~v 1068 (1433)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|||+++|... ++....|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 984988
Q 000541 1069 YVGSLG 1074 (1433)
Q Consensus 1069 y~G~~g 1074 (1433)
..|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=313.44 Aligned_cols=220 Identities=20% Similarity=0.281 Sum_probs=181.3
Q ss_pred EEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99511038998804887778814677899986532105455655553265201798948839999849999689999998
Q 000541 123 VRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLAL 202 (1433)
Q Consensus 123 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~L 202 (1433)
++++|++..+.. ..+...+|+|||+.+++||+++|+|||||||||||++|
T Consensus 2 I~i~nlsk~y~~------------------------------~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i 51 (230)
T d1l2ta_ 2 IKLKNVTKTYKM------------------------------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51 (230)
T ss_dssp EEEEEEEEEEEE------------------------------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEEEEEECC------------------------------CCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHC
T ss_conf 899907999489------------------------------98208987133778849979999889999821655750
Q ss_pred HCCCCCCCCCCEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 559899999510999979507887645-------2289972788889999999999987771078850123346229988
Q 000541 203 AGKLDSSLRVSGRVTYNGHDMDEFVPQ-------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREK 275 (1433)
Q Consensus 203 aG~l~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~ 275 (1433)
+|..+|+ +|+|.++|.++.....+ +.++||+|+..++|.+||+||+.|+...+..+.. +..
T Consensus 52 ~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~-------~~~-- 119 (230)
T d1l2ta_ 52 GCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM-------SGE-- 119 (230)
T ss_dssp TTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCC-------CHH--
T ss_pred CCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCC-------CHH--
T ss_conf 6887777---6626999998576885551231255577880412417686688877578887224789-------999--
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 529999997579999964223356689999999919974-3455345755677865675689999998079848598569
Q 000541 276 AAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDV-CADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEI 354 (1433)
Q Consensus 276 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~-~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEp 354 (1433)
+....+...++.+||++ .+|..+. .|||||||||+||++|+.+|+++++|||
T Consensus 120 ----------------------~~~~~~~~~l~~~~L~~~~~~~~p~-----~LSGGqkQRvaIAraL~~~P~lLllDEP 172 (230)
T d1l2ta_ 120 ----------------------ERRKRALECLKMAELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQP 172 (230)
T ss_dssp ----------------------HHHHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ----------------------HHHHHHHHHHHHHCHHHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ----------------------9999999988762423455348802-----3899999999987565227888994687
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCH
Q ss_conf 88999999999999999998822984999985491148833183999629829995396
Q 000541 355 STGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPR 413 (1433)
Q Consensus 355 tsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~ 413 (1433)
|+|||+.++.+|++.++++.+. .+++++.++|...+ ..++|+|++|.+|+|+.+|+.
T Consensus 173 Ts~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 173 TGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HCCEEEEECCCHHH-HHHCCEEEEEECCEEEEECCC
T ss_conf 6546989999999999999984-39999998788899-986998999989999995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=314.63 Aligned_cols=208 Identities=26% Similarity=0.313 Sum_probs=132.1
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC--CCEEEEECCCCCCCCC
Q ss_conf 55326520179894883999984999968999999855989999951099997950788764--5228997278888999
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP--QRTAAYISQHDNHIGE 244 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~ 244 (1433)
..+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|.+..+++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCC
T ss_conf 9999980625688489799999999999999999996698878---8879998672446839887218675001546878
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999877710788501233462299885299999975799999642233566899999999199743455345755
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEM 324 (1433)
Q Consensus 245 lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~ 324 (1433)
+||+|++.|.+.+.+.. .. +.....+.+++.++|.+-.+..++
T Consensus 90 ltv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASS----------SS------------------------EIEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp SBHHHHHHHHHHHHCCC----------HH------------------------HHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred CCHHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHHHHHH---
T ss_conf 66778889899861799----------89------------------------999999999986797888850453---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 67786567568999999807984859856988999999999999999998822984999985491148833183999629
Q 000541 325 LRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 325 ~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~ 404 (1433)
.+|||||||+++|++|+.+|++++|||||+|||..++.+|++.++++.. .+++++.++|...++..++|+|++|.+
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~--~g~tii~~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEET
T ss_pred --HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf --3799898999999998659998873379889798999999999999996--599899995989999996999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999539657999
Q 000541 405 GQIVYQGPREHVLE 418 (1433)
Q Consensus 405 G~iv~~G~~~~~~~ 418 (1433)
|++++.|+++++.+
T Consensus 209 G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 209 GTIVETGTVEELKE 222 (238)
T ss_dssp TEEEEEEEHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999928999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=321.92 Aligned_cols=209 Identities=23% Similarity=0.348 Sum_probs=167.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 326520179894883999984999968999999855989999951099997950788764---52289972788889999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 245 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 245 (1433)
..+|+|||+.++||++++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++. ++..
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA-IMAG 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSC-CCCE
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCC-CCCC
T ss_conf 84142258998599999999999997999999999960989---8779889988442467888743679756654-5785
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998777107885012334622998852999999757999996422335668999999991997434553457556
Q 000541 246 TVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEML 325 (1433)
Q Consensus 246 TVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~ 325 (1433)
||+||+.++.... .+.+...++....+. ...+..+++..+|.+|+.+.
T Consensus 91 ti~eNi~~~~~~~------------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 91 TIRENLTYGLEGD------------------------YTDEDLWQVLDLAFA--------RSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp EHHHHTTSCTTSC------------------------SCHHHHHHHHHHHTC--------TTTTTSSTTGGGCEESTTSB
T ss_pred CHHHHEECCCCCC------------------------CCHHHHHHHHHHHHH--------HHHHCCCCCCCCCCCCCCCC
T ss_conf 3454301244555------------------------423567789999975--------55420374210152368789
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 77865675689999998079848598569889999999999999999988229849999854911488331839996298
Q 000541 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDG 405 (1433)
Q Consensus 326 ~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G 405 (1433)
.|||||||||+|||+++.+|++++|||||++||+.++..|++.++++. ++.|++.++|... ....+|+|++|++|
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~-~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLS-TIVDADKIYFIEKG 213 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHH-HHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEEECCHH-HHHHCCEEEEEECC
T ss_conf -879999999999999852998999658865569889999988788871---7998999978799-99849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999539657999
Q 000541 406 QIVYQGPREHVLE 418 (1433)
Q Consensus 406 ~iv~~G~~~~~~~ 418 (1433)
+++++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=315.89 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=183.3
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++.+|++++++ . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-012334889615887899988899999877712999999367999999999992996422121369988888988899
Q 000541 916 Q-ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 916 ~-~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 994 (1433)
. ...++.+|||+|+..++|.+||+|++.|...++.-. . +++++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999619976798299999999989999999999875-79889999558888999976205588169599998498
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|.+. ++.+..|++++|.+ |+++..|+.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=314.64 Aligned_cols=221 Identities=27% Similarity=0.387 Sum_probs=177.1
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC----CEEEEECCCCCCC
Q ss_conf 553265201798948839999849999689999998559899999510999979507887645----2289972788889
Q 000541 167 KHLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYISQHDNHI 242 (1433)
Q Consensus 167 ~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 242 (1433)
...++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+...+
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9968871217998899799999999984999999997797688---7379999996640569999983387257764247
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999998777107885012334622998852999999757999996422335668999999991997434553457
Q 000541 243 GEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGD 322 (1433)
Q Consensus 243 ~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~ 322 (1433)
+++||+||+.+++...+....... -.. ...+ +. .+.....+.+++.+++++..|..+++
T Consensus 92 ~~ltv~enl~~~~~~~~~~~~~~~-------~~~-~~~~--~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (254)
T d1g6ha_ 92 KEMTVLENLLIGEICPGESPLNSL-------FYK-KWIP--KE-----------EEMVEKAFKILEFLKLSHLYDRKAGE 150 (254)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHH-------HHC-SSCC--CC-----------HHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CCCEEEEEEEEHHHHCCCCCHHHH-------HHH-CCCC--CH-----------HHHHHHHHHHHHHCCCCHHCCCCHHH
T ss_conf 887423214301333034504566-------542-1353--28-----------99999999998761963020595356
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 55677865675689999998079848598569889999999999999999988229849999854911488331839996
Q 000541 323 EMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402 (1433)
Q Consensus 323 ~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL 402 (1433)
|||||||||.||++|+.+|++++|||||+|||..++.+|++.++++.. .+++++.+.|...++.+++|+|++|
T Consensus 151 -----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm 223 (254)
T d1g6ha_ 151 -----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVM 223 (254)
T ss_dssp -----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred -----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEE
T ss_conf -----991888899999999759272324397656999999999999999997--8998999947699999869999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 2982999539657999
Q 000541 403 SDGQIVYQGPREHVLE 418 (1433)
Q Consensus 403 ~~G~iv~~G~~~~~~~ 418 (1433)
.+|+++..|+++|+.+
T Consensus 224 ~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 224 FNGQIIAEGRGEEEIK 239 (254)
T ss_dssp ETTEEEEEEESHHHHH
T ss_pred ECCEEEEEECHHHHHH
T ss_conf 6998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=310.07 Aligned_cols=204 Identities=24% Similarity=0.375 Sum_probs=138.4
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 3265201798948839999849999689999998559899999510999979507887645----228997278888999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 244 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 244 (1433)
+++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+...++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 999999998777107885012334622998852999999757999996422335668999999991-9974345534575
Q 000541 245 MTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL-GLDVCADTMVGDE 323 (1433)
Q Consensus 245 lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L-gL~~~~dT~VG~~ 323 (1433)
+||+||+.+++....... ......+.+++.+ +|.+..|..++
T Consensus 96 ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CCHHHHHHHHHHHCCCHH-----------------------------------HHHHHHHHHHHHHHCHHHHHHCCHH--
T ss_conf 369999998887327888-----------------------------------9999999999874176888758543--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 56778656756899999980798485985698899999999999999999882298499998549114883318399962
Q 000541 324 MLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILIS 403 (1433)
Q Consensus 324 ~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~ 403 (1433)
.|||||||||+||++|+.+|++++|||||+|||+.++..+++.++++.+ .+++++.++|...++.+++|+|++|.
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ---HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---3899999999999999829987400398867999999999999999996--89989999588999999699999998
Q ss_pred CCEEEEECCHHHHH
Q ss_conf 98299953965799
Q 000541 404 DGQIVYQGPREHVL 417 (1433)
Q Consensus 404 ~G~iv~~G~~~~~~ 417 (1433)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEECCHHHHH
T ss_conf 99999984899984
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=308.71 Aligned_cols=219 Identities=24% Similarity=0.338 Sum_probs=191.2
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.+..+|++.+++ ++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEEC-------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 789995899999-------------9999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 80--0123348896158878999888999998777129999993679999999999929964221213699888889888
Q 000541 915 KQ--ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQ 992 (1433)
Q Consensus 915 ~~--~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGq 992 (1433)
.. ...++..+||+|+...++++|+.|++.|.+.++. .+..+.++.++++++.+++.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHH
T ss_conf 46839887218675001546878667788898998617---998999999999998679788885045-----3379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 99999999996199767982999999999899999999998757988999955888899997620558816959999849
Q 000541 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 993 rkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~ 1072 (1433)
|||++||++|+.+|++++|||||+|||+.+...+++.++++++.|.|||+++|+.. ++....|++++|.+ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999999989-99999928
Q ss_pred CCCCHHHHHH
Q ss_conf 8867037999
Q 000541 1073 LGRHSSHLIK 1082 (1433)
Q Consensus 1073 ~g~~~~~~~~ 1082 (1433)
+ +++.+
T Consensus 217 ~----~el~~ 222 (238)
T d1vpla_ 217 V----EELKE 222 (238)
T ss_dssp H----HHHHH
T ss_pred H----HHHHH
T ss_conf 9----99986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=305.62 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=164.6
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC----------------CCE
Q ss_conf 5326520179894883999984999968999999855989999951099997950788764----------------522
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVP----------------QRT 231 (1433)
Q Consensus 168 ~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~----------------~~~ 231 (1433)
...+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCC
T ss_conf 999881506688699799999899982999999997476678---99779999993367752000023517679997454
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8997278888999999999998777-107885012334622998852999999757999996422335668999999991
Q 000541 232 AAYISQHDNHIGEMTVRETLAFSAR-CQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKIL 310 (1433)
Q Consensus 232 ~~yv~Q~d~~~~~lTVrEtl~f~a~-~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L 310 (1433)
++||+|+...++.+||+|++.|+.. ..+. ++.+ ....+..+++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~~~------------------------~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKHD------------------------ARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CHHH------------------------HHHHHHHHHHHT
T ss_pred EEEEEECHHHCCCHHCCHHHHHHHHHHCCC----------CHHH------------------------HHHHHHHHHHHC
T ss_conf 489983323141101021365657876299----------9899------------------------999999999982
Q ss_pred CCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCH
Q ss_conf 99743-45534575567786567568999999807984859856988999999999999999998822984999985491
Q 000541 311 GLDVC-ADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPA 389 (1433)
Q Consensus 311 gL~~~-~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~ 389 (1433)
||.+- .|...+ .|||||||||+||++|+.+|+++++||||+|||..++.+|++.++++.+ . +++++.++|..
T Consensus 137 ~l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl 209 (258)
T d1b0ua_ 137 GIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEM 209 (258)
T ss_dssp TCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCH
T ss_pred CCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-C-CCCEEEEECCH
T ss_conf 995244306822-----0567788898999998439987885245556887888899876554103-6-88338994899
Q ss_pred HHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 14883318399962982999539657999
Q 000541 390 PETYDLFDDIILISDGQIVYQGPREHVLE 418 (1433)
Q Consensus 390 ~~~~~~fD~iivL~~G~iv~~G~~~~~~~ 418 (1433)
.++..++|+|++|.+|++++.|+++++..
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998699999997999999849999983
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=308.80 Aligned_cols=199 Identities=23% Similarity=0.371 Sum_probs=171.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 01798948839999849999689999998559899999510999979507887645-22899727888899999999999
Q 000541 174 DVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLA 252 (1433)
Q Consensus 174 ~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~ 252 (1433)
|||+.+. ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 87771078850123346229988529999997579999964223356689999999919974345534575567786567
Q 000541 253 FSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQ 332 (1433)
Q Consensus 253 f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGq 332 (1433)
|+.+.. .+.+ ....++.+++.+||++..|..+. .|||||
T Consensus 93 ~~l~~~------------~~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------ERVE------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS------------CHHH------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC------------CHHH------------------------HHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336------------7788------------------------99999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 56899999980798485985698899999999999999999882298499998549114883318399962982999539
Q 000541 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGP 412 (1433)
Q Consensus 333 rkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~ 412 (1433)
||||+||++|+.+|++++|||||+|||+.++..+++.++++.+..+ ++++.++|...++..++|+|++|++|+++..|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 8999998777516770675286555887999999999999987439-769998189999999699999998999999906
Q ss_pred HHHHHH
Q ss_conf 657999
Q 000541 413 REHVLE 418 (1433)
Q Consensus 413 ~~~~~~ 418 (1433)
++++..
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=308.08 Aligned_cols=215 Identities=22% Similarity=0.336 Sum_probs=182.2
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 06899510247615854357765556516402615688388499996569998577996360897797035699996941
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~ 913 (1433)
..++.+|++++++ ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8800---1233-4889615887899988899999877712999999367999999999992-996422121369988888
Q 000541 914 KKQE---TFAR-ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV-ELNPLRQALVGLPGVSGL 988 (1433)
Q Consensus 914 ~~~~---~~~~-~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~vg~~~~~gl 988 (1433)
.... ..++ -.+|++|+..+++.+||+|++.+.+..+.+ .+..++.++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHC
T ss_conf 446608888874235567655457763699999988873278----88999999999987417688875854-----338
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 98889999999999619976798299999999989999999999875798899995588889999762055881695999
Q 000541 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEI 1068 (1433)
Q Consensus 989 SgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~v 1068 (1433)
||||||||.||++|+.+|++|+|||||+|||+.+...+++.++++++.|.|||+++|... ++.+..|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCC
Q ss_conf 984988
Q 000541 1069 YVGSLG 1074 (1433)
Q Consensus 1069 y~G~~g 1074 (1433)
+.|+..
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=308.01 Aligned_cols=218 Identities=23% Similarity=0.261 Sum_probs=186.7
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
-++.+|++.+++ ..++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8001----233488961588789998889999987771299----------99993679999999999929964221213
Q 000541 915 KQET----FARISGYCEQNDIHSPNVTVYESLLYSAWLRLP----------LEVDSPTRKMFIEEVMELVELNPLRQALV 980 (1433)
Q Consensus 915 ~~~~----~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~----------~~~~~~~~~~~v~~vl~~l~l~~~~~~~v 980 (1433)
.... .++-++|++|+...++.+||.|++.+++..+.. .....+...+.++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 69988888988899999999996199767982999999999899999999998757988999955888899997620558
Q 000541 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFL 1060 (1433)
Q Consensus 981 g~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~l 1060 (1433)
..||||||||+.||++|+.+|++|+|||||+|||+.++..+++.++++.+.|.|||+++|+.. ++.+..|++++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf -----569918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 81695999984988
Q 000541 1061 LKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1061 l~~gG~~vy~G~~g 1074 (1433)
|.+ |+++..|+..
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=304.23 Aligned_cols=214 Identities=21% Similarity=0.268 Sum_probs=183.1
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++.+|++.+++ ...+|+|||+.+++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEEC
T ss_conf 99997899989-------------9998815066886997999998999829999999974766--78997799999933
Q ss_pred CC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 00----------------12334889615887899988899999877712999999367999999999992996422-12
Q 000541 916 QE----------------TFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR-QA 978 (1433)
Q Consensus 916 ~~----------------~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~ 978 (1433)
.. ..++.+|||.|+..+++.+||.|++.|...... ..+..+..+++.++++.+++.+.. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 677520000235176799974544899833231411010213656578762--999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCE
Q ss_conf 13699888889888999999999961997679829999999998999999999987579889999558888999976205
Q 000541 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDEL 1058 (1433)
Q Consensus 979 ~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i 1058 (1433)
.+ ..|||||+|||+||++|+.+|++|++||||+|||+.+...|++.++++.+.|.|||+++|... ++....|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 82-----205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 588169599998498
Q 000541 1059 FLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1059 ~ll~~gG~~vy~G~~ 1073 (1433)
++|.+ |+++..|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEECCH
T ss_conf 99979-999998499
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=304.68 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=171.7
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++|+||+|+++. +.+.+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 80---01233488961588789998889999987771299999936799999999999299-------642212136998
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQALVGLPG 984 (1433)
Q Consensus 915 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~vg~~~ 984 (1433)
.. ..+++.++||+|+..+ ...||+|++.|.. ...+.++ +.+..+..++ ..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVL-LNRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCC-TTSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCC-CCCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 400246553528898244655-7840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 88889888999999999961997679829999999998999999999987579889999558888999976205588169
Q 000541 985 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064 (1433)
Q Consensus 985 ~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~g 1064 (1433)
..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|.+
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 599998498
Q 000541 1065 GQEIYVGSL 1073 (1433)
Q Consensus 1065 G~~vy~G~~ 1073 (1433)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=299.73 Aligned_cols=216 Identities=22% Similarity=0.324 Sum_probs=172.8
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++|+||+|+++.. ....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 80---012334889615887899988899999877712999999367999-----9999999929964221213699888
Q 000541 915 KQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKM-----FIEEVMELVELNPLRQALVGLPGVS 986 (1433)
Q Consensus 915 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l~l~~~~~~~vg~~~~~ 986 (1433)
.. ..+++.++||+|+..++ ..||+|++.|... .......... ...+.++ .+.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 1101378887765404565002-7634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 8898889999999999619976798299999999989999999999875-798899995588889999762055881695
Q 000541 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 987 glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG 1065 (1433)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.++++.+ .++|+|+++|++ +..+.+|++++|.+ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--99985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99998498
Q 000541 1066 QEIYVGSL 1073 (1433)
Q Consensus 1066 ~~vy~G~~ 1073 (1433)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=309.38 Aligned_cols=211 Identities=25% Similarity=0.402 Sum_probs=170.9
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89951024761585435776555651640261568838849999656999857799636089779703569999694188
Q 000541 836 ITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKK 915 (1433)
Q Consensus 836 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~ 915 (1433)
++++||+|+++. .+.+|+|||+.++||+.+||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 0---012334889615887899988899999877712999999367999999999992996-------422121369988
Q 000541 916 Q---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELN-------PLRQALVGLPGV 985 (1433)
Q Consensus 916 ~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~vg~~~~ 985 (1433)
. ..+++.++||+|+..+++ .|++|++.+.. ....+.+ .+++.++..++. +..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGL----EGDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCT----TSCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCC----CCCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 2467888743679756654578-53454301244----5554235----677899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 88898889999999999619976798299999999989999999999875798899995588889999762055881695
Q 000541 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065 (1433)
Q Consensus 986 ~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG 1065 (1433)
..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .|+|+|+++|++ +....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l--~~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH--HHHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-799899997879--99984999999989-9
Q ss_pred EEEEECCCC
Q ss_conf 999984988
Q 000541 1066 QEIYVGSLG 1074 (1433)
Q Consensus 1066 ~~vy~G~~g 1074 (1433)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=300.84 Aligned_cols=213 Identities=25% Similarity=0.388 Sum_probs=174.4
Q ss_pred CEEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 60689951024761585435776555651640261568838849999656999857799636089779703569999694
Q 000541 833 PHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912 (1433)
Q Consensus 833 ~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~ 912 (1433)
...++|+||+|+++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 1880---0123348896158878999888999998777129999993679999999999929964-------22121369
Q 000541 913 PKKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-------LRQALVGL 982 (1433)
Q Consensus 913 ~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~vg~ 982 (1433)
+... ..+++.++||+|+..++ ..||+|++.|.. + ..+++ .+.++++..++.+ --++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 753078888634145651015689-987999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE
Q ss_conf 98888898889999999999619976798299999999989999999999875798899995588889999762055881
Q 000541 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062 (1433)
Q Consensus 983 ~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~ 1062 (1433)
. ...||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|.
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 8-89849999999999999855998999837654479779999999999875-3888999968999--998599999998
Q ss_pred CCCEEEEECCC
Q ss_conf 69599998498
Q 000541 1063 RGGQEIYVGSL 1073 (1433)
Q Consensus 1063 ~gG~~vy~G~~ 1073 (1433)
+|+++..|+.
T Consensus 227 -~G~iv~~G~~ 236 (255)
T d2hyda1 227 -NGHIVETGTH 236 (255)
T ss_dssp -TTEEEEEECH
T ss_pred -CCEEEEECCH
T ss_conf -9999998899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=299.81 Aligned_cols=193 Identities=23% Similarity=0.377 Sum_probs=171.2
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 615688388499996569998577996360897797035699996941880-0123348896158878999888999998
Q 000541 866 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ-ETFARISGYCEQNDIHSPNVTVYESLLY 944 (1433)
Q Consensus 866 ~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~-~~~~~~~~yv~Q~d~~~~~lTv~E~L~f 944 (1433)
|||+.+. +|.++|+||||||||||+++|+|... +.+|+|.+||.+... ...+|.+|||+|++.++|++||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 77712999999367999999999992996422121369988888988899999999996199767982999999999899
Q 000541 945 SAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024 (1433)
Q Consensus 945 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~ 1024 (1433)
+. + ..+..+++++++++++.++|.+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999998757-9889999558888999976205588169599998498
Q 000541 1025 IVMRTVRNTVDT-GRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1025 ~i~~~l~~~~~~-g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
.+++.++++.+. |.|||+++|++. ++.+..|++++|.+ |+++..|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=298.65 Aligned_cols=213 Identities=23% Similarity=0.325 Sum_probs=172.5
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 06899510247615854357765556516402615688388499996569998577996360897797035699996941
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~ 913 (1433)
..++|+||+|+++. ....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 880---01233488961588789998889999987771299999936799999999999299642-------21213699
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL-------RQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~vg~~ 983 (1433)
... ..+++.++||+|+..++ ..|+++++.+.. +...+.+ .++++++..++.+. -++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----2208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 88888988899999999996199767982999999999899999999998757988999955888899997620558816
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~ 1063 (1433)
...||||||||++|||+|+.+|+|++||||||+||+.++..|++.|+++. .++|+|+++|+++ ..+.+|++++|.+
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--9985999999989
Q ss_pred CCEEEEECCC
Q ss_conf 9599998498
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~vy~G~~ 1073 (1433)
|+++..|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.8e-45 Score=291.70 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=158.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32652017989488399998499996899999985598999995109999795078876452289972788889999999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 248 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVr 248 (1433)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+.. ++..||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-l~~~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSW-IMPGTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCC-CCSEEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCC-CCCCEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430-2676032
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998777107885012334622998852999999757999996422335668999999991997434553457556778
Q 000541 249 ETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGI 328 (1433)
Q Consensus 249 Etl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gL 328 (1433)
||+.|+.... .. ......+. .+....+..+++..+|.+|+.+. .|
T Consensus 115 eni~~~~~~~----~~----~~~~~~~~--------------------------~~~~~~i~~l~~~~~~~~~~~~~-~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD----EY----RYKSVVKA--------------------------CQLQQDITKFAEQDNTVLGEGGV-TL 159 (281)
T ss_dssp HHHTTTSCCC----HH----HHHHHHHH--------------------------TTCHHHHTTSTTGGGCEECTTCT-TS
T ss_pred CCCCCCCCCC----CH----HHHHHHHH--------------------------HHHHHHHHHCHHHHHHHHHHHCC-CC
T ss_conf 1420333456----05----79999999--------------------------77699998461233235555423-77
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 65675689999998079848598569889999999999999999988229849999854911488331839996298299
Q 000541 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIV 408 (1433)
Q Consensus 329 SGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv 408 (1433)
||||||||+|||+|+.+|++++|||||++||+.+..+|++.+... ...+++++.++|+. +....+|+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~--~~~~~tvi~itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK--LMANKTRILVTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCC--CTTTSEEEEECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECHH-HHHHHCCEEEEEECCEEE
T ss_conf 999999999999998696351333855448989999999999988--62899999992528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9539657999
Q 000541 409 YQGPREHVLE 418 (1433)
Q Consensus 409 ~~G~~~~~~~ 418 (1433)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-42 Score=273.81 Aligned_cols=193 Identities=24% Similarity=0.367 Sum_probs=119.4
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 402615688388499996569998577996360897797035699996941880---01233488961588789998889
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTVY 939 (1433)
Q Consensus 863 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~ 939 (1433)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|+.|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99998777129999993679999999999929964221213699888889888999999999961-------99767982
Q 000541 940 ESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1012 (1433)
Q Consensus 940 E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~-------~p~il~lD 1012 (1433)
+.+.+... ...+.+.++++++.+++.+..+..+ ..||||||||++||++|+. +|+|++||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001--------4668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 9999999998999999999987579889999558888999976205588169599998498
Q 000541 1013 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1013 EPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
|||+|||..+...+++.++++.+.|.|||+++|++. ++.+..|++++|.+ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 877778989999999999999867999999967799-99997999999979-989998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.3e-42 Score=274.55 Aligned_cols=187 Identities=20% Similarity=0.351 Sum_probs=150.8
Q ss_pred EEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 16402615688388499996569998577996360897797035699996941880012334889615887899988899
Q 000541 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYE 940 (1433)
Q Consensus 861 ~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 940 (1433)
+++|+|||+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++|++|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99987771299999936799999999999-------29964221213699888889888999999999961997679829
Q 000541 941 SLLYSAWLRLPLEVDSPTRKMFIEEVMEL-------VELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1013 (1433)
Q Consensus 941 ~L~f~a~lr~~~~~~~~~~~~~v~~vl~~-------l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDE 1013 (1433)
++.|.. ..+... .+++++. ..+.+..++.++.. ...||||||||++|||+|+.+|+|++|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----9999999776999984612332355554-23779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCC
Q ss_conf 9999999989999999999875798899995588889999762055881695999984988
Q 000541 1014 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLG 1074 (1433)
Q Consensus 1014 PTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g 1074 (1433)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-41 Score=270.12 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=167.7
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 265201798948839999849999689999998559899999510999979507887645---22899727888899999
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 246 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 246 (1433)
+.|+|||+.+++||+++|+||||||||||+++|+|.. ++ +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999987771078850123346229988529999997579999964223356689999999919974345534575567
Q 000541 247 VRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLR 326 (1433)
Q Consensus 247 VrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~ 326 (1433)
+.+++.++..-+ ......+.+++.++|++..+..++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 988764100146---------------------------------------689999999986598767676844-----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 786567568999999807-------9848598569889999999999999999988229849999854911488331839
Q 000541 327 GISGGQKKRVTTGEMMVG-------PAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDI 399 (1433)
Q Consensus 327 gLSGGqrkRvsia~~l~~-------~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~i 399 (1433)
.||||||||+++|++++. +|++++|||||+|||..++..+.+.++++.. .+++++.++|...++.+++|++
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~--~g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH--TTCEEEECCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986--7999999967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 996298299953965799
Q 000541 400 ILISDGQIVYQGPREHVL 417 (1433)
Q Consensus 400 ivL~~G~iv~~G~~~~~~ 417 (1433)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4e-40 Score=262.87 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=135.5
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.++++|++++++ +.+|+|+|+.+++|+++||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012334889615887899988899999877712999999367999999999992996422121369988888988899
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 994 (1433)
.. .+...+|++|+..+...+|++|++.+.+.++... .+. ..+.+.++.+++.+++.. ...|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCCC------CCCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----999999987488563012------6868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 999999996199767982999999999899999999998757988999955888899997620558816
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~ 1063 (1433)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+.+.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.8e-38 Score=251.45 Aligned_cols=183 Identities=20% Similarity=0.283 Sum_probs=148.8
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 26520179894883999984999968999999855989999951099997950788764522899727888899999999
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 249 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 249 (1433)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99987771078850123346229988529999997579999964223356689999999919974345534575567786
Q 000541 250 TLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGIS 329 (1433)
Q Consensus 250 tl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLS 329 (1433)
++.+.+...+... +.++ ....++.+++.+. +..++ .||
T Consensus 90 ~l~~~~~~~~~~~---------------------~~~~---------------~~~~l~~~~~~~~-~~~~~-----~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKV---------------------NKNE---------------IMDALESVEVLDL-KKKLG-----ELS 127 (200)
T ss_dssp HHHHHHHHTTCCC---------------------CHHH---------------HHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHHCCCCC---------------------CHHH---------------HHHHHHHCCCCCC-CCCCC-----CCC
T ss_conf 9999997548863---------------------7999---------------9999987488563-01268-----689
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 567568999999807984859856988999999999999999998822984999985491148833183999629
Q 000541 330 GGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISD 404 (1433)
Q Consensus 330 GGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~ 404 (1433)
||||||+.+|++++.+|++++|||||+|||..++..+++.+++..+. +++++++.+|. .+++|.+.+|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC----CTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 71888899999886499899986862016999999999999999867-99999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.43 E-value=2.9e-15 Score=108.40 Aligned_cols=80 Identities=18% Similarity=0.048 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 89888999999999961997679829999999998999999999987-57988999955888899997620558816959
Q 000541 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQ 1066 (1433)
Q Consensus 988 lSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~ 1066 (1433)
+++|++++..++.++..+|+++++|||+...+ .....+..+.++. +.+.+++.++|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999849
Q 000541 1067 EIYVGS 1072 (1433)
Q Consensus 1067 ~vy~G~ 1072 (1433)
.+.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=3.9e-14 Score=101.42 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=95.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998499996899999985598999995109999795078876452--28997278888999999999998777107885
Q 000541 185 TLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQR--TAAYISQHDNHIGEMTVRETLAFSARCQGVGS 262 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~--~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~ 262 (1433)
++|.||||||||||++.++|.++++ .|.+...+.+......+. .+.++..........+..+...+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE---------
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443---------
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01233462299885299999975799999642233566899999999199743455345755677865675689999998
Q 000541 263 RHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342 (1433)
Q Consensus 263 ~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l 342 (1433)
.+ .+.+ .....+++|+++|.++++++
T Consensus 71 -----------~~--------------------------------------~~~~-----~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 71 -----------GS--------------------------------------YGVN-----VQYFEELAIPILERAYREAK 96 (178)
T ss_dssp -----------TT--------------------------------------EEEC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HH--------------------------------------HHCC-----CCHHHHHHHHHHHHHHHHHH
T ss_conf -----------02--------------------------------------3037-----62566532013789999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 0798485985698899999999999999999882298499998549114883318399962982999539
Q 000541 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGP 412 (1433)
Q Consensus 343 ~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~ 412 (1433)
...|+++++|||.... .........+.+... ..+++++.++|. .+...+.|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~-~~~~~il~~~h~-~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKME--LFSKKFRDLVRQIMH-DPNVNVVATIPI-RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTG--GGCHHHHHHHHHHHT-CTTSEEEEECCS-SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCC--HHHHHHHHHHHHHHC-CCCCEEEEEECC-HHHHHHHCEEEEEECCEEEEECC
T ss_conf 4099742302777310--045799999998750-579789999744-77898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=2.2e-08 Score=65.72 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 786567568999999----807984859856988999999999999999998822984999985491148833183999
Q 000541 327 GISGGQKKRVTTGEM----MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401 (1433)
Q Consensus 327 gLSGGqrkRvsia~~----l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iiv 401 (1433)
-+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+... ..+-++ ++.|+|++.+.+|+++.
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~---~~~Qvi-itTHsp~~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS---KHTQFI-VITHNKIVMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---TTSEEE-EECCCTTGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC---CCCEEE-EEECCHHHHHHCCCEEE
T ss_conf 0257776677777665565422674455432033579789999999999855---488799-99898899973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=6.9e-09 Score=68.81 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 8888988899999999996----199767982999999999899999999998757988999955888899997620558
Q 000541 985 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFL 1060 (1433)
Q Consensus 985 ~~glSgGqrkRl~ia~~L~----~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~l 1060 (1433)
...+|.|||+.+.++..+. .+++++++|||-++|++.....+.+.++...+ ..-||+|+|.| .+.+.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554-88799998988--99973242899
Q ss_pred E
Q ss_conf 8
Q 000541 1061 L 1061 (1433)
Q Consensus 1061 l 1061 (1433)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=3.2e-09 Score=70.92 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEE
Q ss_conf 88898889999999999----61997679829999999998999999999987579889999558888999976205588
Q 000541 986 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLL 1061 (1433)
Q Consensus 986 ~glSgGqrkRl~ia~~L----~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll 1061 (1433)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++.+..+.-+|+|+|+| .+.+..|.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=1.5e-07 Score=60.43 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 677865675689999998----0798485985698899999999999999999882298499998549114883318399
Q 000541 325 LRGISGGQKKRVTTGEMM----VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDII 400 (1433)
Q Consensus 325 ~~gLSGGqrkRvsia~~l----~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~ii 400 (1433)
++-+|||||.++++|-.+ ..++++++||||.++||......+.+.|++.+. ..+-+| ++.|.|++.+.+|.++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 96
Q 000541 401 LI 402 (1433)
Q Consensus 401 vL 402 (1433)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.02 E-value=6e-06 Score=50.57 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=18.1
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 520179894883999984999968999999855
Q 000541 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 172 L~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
|+++.+-++||++++|.|+||+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.00 E-value=0.00014 Score=42.08 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=72.8
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 402615688388499996569998577996360897--797035699996941880012334889615887899988899
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYE 940 (1433)
Q Consensus 863 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~--~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 940 (1433)
-|+.+.+-++||+++.|.|++|+||||++.-++-.. ..|. . +.|+. ...+..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~---~----------------v~~~s------~E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK---K----------------VGLAM------LEESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC---C----------------EEEEE------SSSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC---C----------------EEEEE------ECCCHHH
T ss_conf 688874697898089999479997999999999726553366---3----------------45764------0111135
Q ss_pred HHH-H-HHHHCCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999-8-7771299999936799-----9999999992-996422121369988888988899999999996199767982
Q 000541 941 SLL-Y-SAWLRLPLEVDSPTRK-----MFIEEVMELV-ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1012 (1433)
Q Consensus 941 ~L~-f-~a~lr~~~~~~~~~~~-----~~v~~vl~~l-~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lD 1012 (1433)
... + +.....+.......+. ...++..+.+ +....... +........+.....-...--.+|+++++|
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE----CCC-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE----CCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 7769999864587101012222214567788898874035214662----143310689999986543213676259970
Q ss_pred CC-----CCCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----99999--99899999999998757-9889999558
Q 000541 1013 EP-----TSGLD--ARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1046 (1433)
Q Consensus 1013 EP-----TsGLD--~~~a~~i~~~l~~~~~~-g~Tvi~tiHq 1046 (1433)
-- ..+-+ ......+++.+++++.. +++|+++.|-
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 542120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.96 E-value=0.0001 Score=42.92 Aligned_cols=61 Identities=8% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 8899999999996199767982999999999899999-99999875798899995588889999
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIVE 1053 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~-~~l~~~~~~g~Tvi~tiHqps~~i~~ 1053 (1433)
.|-+++.-......+.+++++||..+|=|+.....+. ..+..+.+.+..+++++|. .++.+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~--~eL~~ 161 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY--FELTA 161 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC--HHHHT
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEC--HHHHH
T ss_conf 867889877502897727855454568623320025888888886237613786520--23332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.00023 Score=40.69 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 8999999999961997679829999999998999999-99998757-988999955888
Q 000541 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1048 (1433)
Q Consensus 992 qrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~-~l~~~~~~-g~Tvi~tiHqps 1048 (1433)
|-+|+.-......+.+++++||+.+|=++.....+.. .+..+... +..+++|+|...
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 99999999974546608853222358774566678987645432045442898524687
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=0.0008 Score=37.37 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 75689999998079848598569889999999999999999988229849999854
Q 000541 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387 (1433)
Q Consensus 332 qrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q 387 (1433)
|-+|++-.-...+..+++++||+.+|-|+.....+...+-+.-...+..++++.|+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~ 156 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY 156 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 67889877502897727855454568623320025888888886237613786520
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00093 Score=36.96 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=15.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4883999984999968999999855
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
.||++++|.|++|+|||||+..|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 5895899992899989999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.58 E-value=0.00077 Score=37.46 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 98948839999849999689999998559
Q 000541 177 GIIRPGRMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 177 ~~i~pG~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
|-+++|++++|.|+||+|||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89869849999918999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=3e-05 Score=46.24 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=24.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 8839999849999689999998559899999510999
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVT 217 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~ 217 (1433)
+|+.++++|+||.|||||+++|.|..... .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.0017 Score=35.40 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=73.9
Q ss_pred EEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 64026156883884999965699985779963608977970356999969418800123348896158878999888999
Q 000541 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYES 941 (1433)
Q Consensus 862 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~ 941 (1433)
.++.+ . .||+++.|.|++|+|||||+.-|+.....| .-.+.+.... ...+-|+..++.. -.+.+-
T Consensus 21 ~li~G---~-~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~~~~~~~~----~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN---M-VAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDLLEVGELP----TGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp EEETT---E-ETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCTTCCCCCC----CCCEEEEESSSCH---HHHHHH
T ss_pred HHHCC---C-CCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCCCCCCCCC----CCCEEEEECCCHH---HHHHHH
T ss_conf 98689---5-589589999289998999999999999769----9721112357----8736898512349---999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C-
Q ss_conf 998777129999993679999999999929964221213699888889888999999999961997679829999---9-
Q 000541 942 LLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 1017 (1433)
Q Consensus 942 L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs---G- 1017 (1433)
+ .+... +.+.... ......+.+.+..+.. .....-. .+.--.....+|+++++|.-+. +
T Consensus 86 l--~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 L--HALGA---HLSAEER----QAVADGLLIQPLIGSL-----PNIMAPE---WFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp H--HHHHT---TSCHHHH----HHHHHHEEECCCTTSC-----CCTTSHH---HHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred H--HHHHH---CCCHHHH----HCCCCCCEECCCCCCC-----CHHHHHH---HHHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 9--99862---3686665----3123332321456742-----0357899---999988752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHH-CCCEEEEEECCC
Q ss_conf -999989999999999875-798899995588
Q 000541 1018 -LDARAAAIVMRTVRNTVD-TGRTVVCTIHQP 1047 (1433)
Q Consensus 1018 -LD~~~a~~i~~~l~~~~~-~g~Tvi~tiHqp 1047 (1433)
-|......+++.++.++. .+++++++.|..
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.36 E-value=7.5e-05 Score=43.76 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00017 Score=41.55 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 75689999998079848598569889999999999999-99998822984999985
Q 000541 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNS-LRQSIHILKGTTLISLL 386 (1433)
Q Consensus 332 qrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~-l~~~~~~~~~t~iisi~ 386 (1433)
|-+|++-.-....+.+++++||+.+|-++.....+... ++.+.......++++.|
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH 162 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 162 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99999999974546608853222358774566678987645432045442898524
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=8.9e-05 Score=43.28 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=26.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 884999965699985779963608977970356999
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIM 908 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~ 908 (1433)
+|..++++|+||+|||||+|.|.+... .-.|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=8e-05 Score=43.58 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=3.5e-05 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=25.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 8839999849999689999998559899999510999
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVT 217 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~ 217 (1433)
.|+.++++|+||.|||||+++|.|..... .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=9.5e-05 Score=43.12 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|++..|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.10 E-value=0.00028 Score=40.24 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=35.2
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEE
Q ss_conf 99999619976798299999999989999999999875798899995588889999762055
Q 000541 998 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELF 1059 (1433)
Q Consensus 998 ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ 1059 (1433)
+..+|=.+|.+++..|.. |..++...+ +.+.+|..|+.|+|-.+ .+..+++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--676654321
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00011 Score=42.62 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+++..|+|||||||||+.+.|+.++.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 871899989999898999999999869
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.03 E-value=0.00016 Score=41.69 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=26.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 839999849999689999998559899999510999979
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG 220 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G 220 (1433)
.+.+++.||||+|||||.++|++.+.. +-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC-----CEEEEEC
T ss_conf 979998897998899999999998651-----5489832
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.01 E-value=0.00013 Score=42.31 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=24.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 39999849999689999998559899999510999979
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNG 220 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G 220 (1433)
++..|.|++|||||||+..|..++.....--|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00032 Score=39.84 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=22.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 989488399998499996899999985598
Q 000541 177 GIIRPGRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 177 ~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
|-+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.00022 Score=40.88 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 84999965699985779963608977
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
|.++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00029 Score=40.14 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=19.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.93 E-value=0.0002 Score=41.15 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.92 E-value=0.00023 Score=40.68 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++++|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00035 Score=39.61 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=18.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.|.+..|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.89 E-value=0.00046 Score=38.85 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.00023 Score=40.68 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 56883884999965699985779963608977
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
...++.|.-+.+.|++||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99998378889994035662578999865301
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.85 E-value=0.0059 Score=31.98 Aligned_cols=30 Identities=47% Similarity=0.638 Sum_probs=25.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 488399998499996899999985598999
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLDSS 209 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~ 209 (1433)
.|+=++++.||.||||||.|.++...++..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 410548987678777447799986662578
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.85 E-value=0.00031 Score=39.93 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+|--++|.|||||||||+.+.|+-+++
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.83 E-value=0.00037 Score=39.45 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=8.5e-05 Score=43.42 Aligned_cols=27 Identities=48% Similarity=0.679 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 399998499996899999985598999
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLDSS 209 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~~~ 209 (1433)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.00011 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=26.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 884999965699985779963608977970356999
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIM 908 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~ 908 (1433)
.|..++++|+||+|||||+|.|.+... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.79 E-value=0.00046 Score=38.85 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999849999689999998559
Q 000541 183 RMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
+++.+.|+|||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.78 E-value=0.00037 Score=39.45 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=15.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.77 E-value=0.01 Score=30.52 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=20.0
Q ss_pred ECCC-EEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 0261-568838849999656999857799636
Q 000541 864 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVL 894 (1433)
Q Consensus 864 L~~v-s~~i~pG~~~ai~G~sGaGKTTLl~~L 894 (1433)
|+++ .|-+++|+++.|.|++|+|||+|..-+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 98855689969839999947999999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.76 E-value=0.0016 Score=35.57 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=27.0
Q ss_pred EEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 520-179894883999984999968999999855989
Q 000541 172 LKD-VSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 172 L~~-vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|++ +.|-+++|+++.|.|+||+||||+..-++-..-
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9972079862885999991799998999999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.76 E-value=0.00039 Score=39.32 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|+||+|||||++.|.|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0067 Score=31.61 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.+-+++.||||+|||++.+++|..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.73 E-value=0.00054 Score=38.42 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998499996899999985598
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
+|--+.++|||||||||+.+.|+-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.71 E-value=0.00053 Score=38.50 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+++|+|||||||||+.+.|+-.+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 4899989999988999999999979
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.70 E-value=0.00038 Score=39.36 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.+.++.|+|||||||||+.+.|+-++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6782899989999987999999999869
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00046 Score=38.84 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.|.++.|+||||+|||||++.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00063 Score=38.02 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 798948839999849999689999998559
Q 000541 176 SGIIRPGRMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 176 s~~i~pG~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.|-+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00045 Score=38.92 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=2.6e-05 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=26.8
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 520179894883999984999968999999855989
Q 000541 172 LKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 172 L~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.++.+.+| +++|+|||||||||+|.+|.-.+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 70279974998-089988999987999999999966
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.66 E-value=0.00053 Score=38.48 Aligned_cols=23 Identities=52% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.65 E-value=0.0005 Score=38.61 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++|+|++|+|||||++.|.|+..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999989999879999998529874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00054 Score=38.43 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.|+|||||||||+.+.|+-.+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.58 E-value=0.014 Score=29.70 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=27.9
Q ss_pred CEEEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3265201-79894883999984999968999999855
Q 000541 169 LTILKDV-SGIIRPGRMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 169 ~~iL~~v-s~~i~pG~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
..-|+++ +|-+++|+++.|.|+||+|||+|..-++.
T Consensus 12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 3779885568996983999994799999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.56 E-value=0.001 Score=36.65 Aligned_cols=28 Identities=39% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7989488399998499996899999985
Q 000541 176 SGIIRPGRMTLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 176 s~~i~pG~~t~ilGp~GsGKSTLL~~La 203 (1433)
.|-+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.56 E-value=0.00081 Score=37.32 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 839999849999689999998559899
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.++++|.|+|||||||+.+.|+-++..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 988999899998989999999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.53 E-value=0.00069 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 883999984999968999999855989999951099997950
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHD 222 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~ 222 (1433)
|+.-.+++||||+|||.|.++||..+.. --+.+++.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCC
T ss_conf 9866999899998888999998621322-----100034433
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.46 E-value=0.00098 Score=36.81 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=15.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83999984999968999999855
Q 000541 182 GRMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
-++++++|+|||||||+.+.++-
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999989999999997
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00097 Score=36.84 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++|+|||||||||..+.|+-.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00053 Score=38.50 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.|..+.+.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.45 E-value=0.00086 Score=37.16 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00089 Score=37.06 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 388499996569998577996360897
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00071 Score=37.66 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.38 E-value=0.00095 Score=36.89 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.|+|||||||||+.+.|+-.+.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.37 E-value=0.001 Score=36.68 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3884999965699985779963608977
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
+.|.++.|.|++||||||+-+.|+.+..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.0014 Score=35.77 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999849999689999998559899999510999979507887645228997278
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH 238 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~ 238 (1433)
=++++||+|+|||-|.+.||+.++- -=+..++... ..+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEECC
T ss_conf 4799899998899999999987389-----8898625511------411111044
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.33 E-value=0.0011 Score=36.59 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++++|+||+|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0012 Score=36.33 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.31 E-value=0.00085 Score=37.19 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf 999965699985779963608977-9703569999694
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT-GGYISGSIMISGY 912 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~-~~~~~G~i~i~G~ 912 (1433)
.++|+|.+|||||||+..|..+.. .|..-|.|..++.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.30 E-value=0.0012 Score=36.24 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3884999965699985779963608977
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
++|-.++|+|++||||||+.+.|+.+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.29 E-value=0.0012 Score=36.24 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.29 E-value=0.0064 Score=31.76 Aligned_cols=24 Identities=50% Similarity=0.737 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-+++.||||+|||+|.++++..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0012 Score=36.32 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
...++.||||+||||+.+++|..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.001 Score=36.76 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+.|.|||||||||+-+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.26 E-value=0.00099 Score=36.78 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-++|+|||||||||+-+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.26 E-value=0.0015 Score=35.59 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.24 E-value=0.0009 Score=37.04 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99965699985779963608
Q 000541 877 TALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~g 896 (1433)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0017 Score=35.40 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++.|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0016 Score=35.49 Aligned_cols=26 Identities=46% Similarity=0.701 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998499996899999985598999
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDSS 209 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~~ 209 (1433)
-+++.||||+||||+.++++..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.22 E-value=0.0014 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++|+|.+|+|||||+|.|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0018 Score=35.23 Aligned_cols=29 Identities=31% Similarity=0.272 Sum_probs=21.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79894883999984999968999999855
Q 000541 176 SGIIRPGRMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 176 s~~i~pG~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
.|-+++|++++|.|+||+|||+|..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=4.9e-05 Score=44.87 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=26.5
Q ss_pred ECCCEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 026156883884999965699985779963608
Q 000541 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 864 L~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.++.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.00097 Score=36.83 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.+.|+|||||||+||++.|+...+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.20 E-value=0.0016 Score=35.42 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+++++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.0013 Score=36.06 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.002 Score=34.93 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999849999689999998559899999510999979507887645228997278888999
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGE 244 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 244 (1433)
+++|-|++||||||+.+.|...+... . ....+..++++|.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---~--------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---P--------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---T--------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH---C--------------CCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304---6--------------89965999521568984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.18 E-value=0.00098 Score=36.80 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++|+|+|++|||||++.|.|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.16 E-value=0.0017 Score=35.39 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0015 Score=35.67 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
..++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.15 E-value=0.0012 Score=36.27 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0011 Score=36.53 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.14 E-value=0.0017 Score=35.40 Aligned_cols=23 Identities=57% Similarity=0.842 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
..|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0018 Score=35.24 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0012 Score=36.24 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=40.2
Q ss_pred HHHHCCCEEEEECCCC----------CCCHHHHHHHHHHHHHH---H-HCCCEEEEEECCCCHHHHHHHCCEEEEECC--
Q ss_conf 9961997679829999----------99999899999999998---7-579889999558888999976205588169--
Q 000541 1001 ELVANPSIIFMDEPTS----------GLDARAAAIVMRTVRNT---V-DTGRTVVCTIHQPSIDIVEAFDELFLLKRG-- 1064 (1433)
Q Consensus 1001 ~L~~~p~il~lDEPTs----------GLD~~~a~~i~~~l~~~---~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~g-- 1064 (1433)
+--..|+|||+||-=+ +-+......+-..+..+ . ..+--+|+|+++|.. .|.-++ ..|
T Consensus 100 A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~-----ld~al~-R~gRf 173 (256)
T d1lv7a_ 100 AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV-----LDPALL-RPGRF 173 (256)
T ss_dssp HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT-----SCGGGG-STTSS
T ss_pred HHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----CCHHHC-CCCCC
T ss_conf 997599899997756657567898888748999999999999538777799899980799310-----798576-89878
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5999984988670379999840
Q 000541 1065 GQEIYVGSLGRHSSHLIKYFEG 1086 (1433)
Q Consensus 1065 G~~vy~G~~g~~~~~~~~yF~~ 1086 (1433)
.+.++++++... +-.+.|..
T Consensus 174 d~~i~i~~P~~~--~R~~il~~ 193 (256)
T d1lv7a_ 174 DRQVVVGLPDVR--GREQILKV 193 (256)
T ss_dssp CEEEECCCCCHH--HHHHHHHH
T ss_pred CEEEECCCCCHH--HHHHHHHH
T ss_conf 779877995999--99999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0017 Score=35.36 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.|+|||||||||+.+.|+-++.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999998999999999969
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.0018 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-++|+|.||+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0013 Score=36.11 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 568838849999656999857799636089
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.|-++||+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0012 Score=36.27 Aligned_cols=27 Identities=41% Similarity=0.690 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+..-+++.||||+|||+|.+++|+.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 887578878998763047788787718
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.10 E-value=0.0012 Score=36.35 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|-+-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.10 E-value=0.0014 Score=35.77 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.002 Score=34.94 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=14.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
|-.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.08 E-value=0.0018 Score=35.23 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998499996899999985598
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.-.+.|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0016 Score=35.48 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4999965699985779963608977
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
-.+||+|.+|+|||||+|.|.|+..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1799989999978999999958886
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.05 E-value=0.0017 Score=35.41 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
+.|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0023 Score=34.54 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.02 E-value=0.0017 Score=35.38 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49999656999857799636089
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.02 E-value=0.0017 Score=35.26 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++|+|.+|+|||||+|.|.|+..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.01 E-value=0.0021 Score=34.78 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
..|+|+|||||||+.+.||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.00 E-value=0.0025 Score=34.31 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.99 E-value=0.0017 Score=35.38 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=39.6
Q ss_pred HCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHH---H-CCCEEEEEECCCCHHHHHHHCCEEEEECC--CEE
Q ss_conf 19976798299----------99999998999999999987---5-79889999558888999976205588169--599
Q 000541 1004 ANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV---D-TGRTVVCTIHQPSIDIVEAFDELFLLKRG--GQE 1067 (1433)
Q Consensus 1004 ~~p~il~lDEP----------TsGLD~~~a~~i~~~l~~~~---~-~g~Tvi~tiHqps~~i~~~fd~i~ll~~g--G~~ 1067 (1433)
..|.|||+||- ..+-+......+-..+..+- . .+.-||+|+.+|. ..|.-++ ..| .+.
T Consensus 100 ~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~-----~ld~al~-R~~Rf~~~ 173 (247)
T d1ixza_ 100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALL-RPGRFDRQ 173 (247)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GSCGGGG-STTSSCEE
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----CCCHHHC-CCCCCCEE
T ss_conf 69979999773664746789988875899999999999963877789989998079940-----0699675-89878579
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 9984988670379999840
Q 000541 1068 IYVGSLGRHSSHLIKYFEG 1086 (1433)
Q Consensus 1068 vy~G~~g~~~~~~~~yF~~ 1086 (1433)
++++++.. .+-.+.++.
T Consensus 174 i~~~~P~~--~eR~~il~~ 190 (247)
T d1ixza_ 174 IAIDAPDV--KGREQILRI 190 (247)
T ss_dssp EECCSCCH--HHHHHHHHH
T ss_pred EEECCCCH--HHHHHHHHH
T ss_conf 99799699--999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.96 E-value=0.0014 Score=35.81 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999849999689999998559899
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
++..|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.96 E-value=0.0018 Score=35.14 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+=+++.||||+|||++.++++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.96 E-value=0.0024 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++|-|||||||||+.+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.94 E-value=0.0015 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=27.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9488399998499996899999985598999
Q 000541 179 IRPGRMTLLLGPPASGKTTLLLALAGKLDSS 209 (1433)
Q Consensus 179 i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~ 209 (1433)
++.+.-++|.|+.||||||+|++|.+..++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9837888999403566257899986530145
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.94 E-value=0.002 Score=34.89 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+.++|+|||||||+-+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0033 Score=33.51 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=17.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6883884999965699985779963608
Q 000541 869 GAFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 869 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
|-+++|.++-+.|++|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.93 E-value=0.0021 Score=34.72 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.0015 Score=35.60 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0029 Score=33.93 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+++|||||+++|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.91 E-value=0.0023 Score=34.47 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4999965699985779963608
Q 000541 875 VLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0019 Score=34.97 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99965699985779963608977
Q 000541 877 TALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
+.|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0023 Score=34.52 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0024 Score=34.40 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-++|+|++|+|||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.90 E-value=0.0025 Score=34.32 Aligned_cols=23 Identities=57% Similarity=0.720 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.||||+||||+.++++..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.0023 Score=34.49 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++++|++|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0023 Score=34.49 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4999965699985779963608977
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
..+.|+||||+||+||++-|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0033 Score=33.51 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-++++|++++|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.85 E-value=0.0028 Score=33.99 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|++.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0022 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.83 E-value=0.0027 Score=34.10 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.003 Score=33.81 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0024 Score=34.41 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.79 E-value=0.0021 Score=34.79 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-++|+|++|+|||||++.|.+...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.78 E-value=0.0017 Score=35.28 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.++|+|||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.76 E-value=0.003 Score=33.79 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 84999965699985779963608977
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0028 Score=33.98 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++|-|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.74 E-value=0.0025 Score=34.24 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.002 Score=34.83 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.0026 Score=34.14 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.|+||||+|||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.68 E-value=0.0038 Score=33.17 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.68 E-value=0.003 Score=33.77 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0038 Score=33.19 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
++||-|++||||||+-+.|+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0033 Score=33.54 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++++|+|++|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.61 E-value=0.0039 Score=33.06 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0018 Score=35.20 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.57 E-value=0.0048 Score=32.54 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999849999689999998559899
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
+...++|.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.55 E-value=0.0033 Score=33.51 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0055 Score=32.14 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
++||.|++||||||+-+.|....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99996899998768999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0047 Score=32.61 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.|.++++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.54 E-value=0.0041 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49999656999857799636089
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0022 Score=34.69 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-++++|+|++|||||+++|.|...
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.51 E-value=0.0042 Score=32.88 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 38849999656999857799636089
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
++|-.+.|+||+||||||.-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.49 E-value=0.0044 Score=32.78 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.++|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.48 E-value=0.0057 Score=32.07 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998499996899999985598
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.|.++.+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.47 E-value=0.0026 Score=34.22 Aligned_cols=28 Identities=43% Similarity=0.395 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.++.+++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0038 Score=33.18 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
..-.+||.|++|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.45 E-value=0.015 Score=29.46 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=23.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 265201798948839999849999689999998559
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
..+|.....+ .|.=+++.|++|+||||+...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 3178999999-9999999818999989999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.42 E-value=0.0046 Score=32.62 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-++++|.+|||||||++.|.+.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.41 E-value=0.0058 Score=32.03 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+..++++||+|+||||.+--||.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.41 E-value=0.0045 Score=32.69 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++++|.+|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0038 Score=33.16 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 839999849999689999998559899
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
+++.+|-|+-||||||+++.|+..++.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 988999878887799999999999735
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.38 E-value=0.0019 Score=34.96 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
-+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0042 Score=32.92 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.27 E-value=0.005 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+++|.|++||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0065 Score=31.71 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0071 Score=31.49 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999849999689999998559899
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.|.++++-|+.||||||+.+.|+..+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.006 Score=31.93 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.21 E-value=0.0052 Score=32.32 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 568838849999656999857799636089
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
+|-+++|+++.|.|++|+|||++..-++-.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798628859999917999989999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.21 E-value=0.0049 Score=32.48 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984999968999999855989
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.19 E-value=0.0049 Score=32.47 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-+||+|..+||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.0047 Score=32.61 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 56883884999965699985779963608
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.18 E-value=0.0069 Score=31.56 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 88499996569998577996360897-797035699996
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYISGSIMIS 910 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~i~i~ 910 (1433)
..-.++|.|+.|||||||++.|.... ..|..-|-|.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.13 E-value=0.006 Score=31.91 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+||.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0059 Score=31.98 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0059 Score=31.95 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|.|++||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.02 E-value=0.006 Score=31.94 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0075 Score=31.33 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.00 E-value=0.0057 Score=32.05 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+||+||||||+.+.|+.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.0076 Score=31.30 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.++.||+|+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.98 E-value=0.0077 Score=31.26 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++.++|.+|+||||+.+.|+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999999999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.97 E-value=0.0041 Score=32.94 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99998499996899999985598999995109999795078876452289972788889
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHI 242 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~ 242 (1433)
+++|-|++||||||+.+.|...+... | -.++.++|++-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----G---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----T---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C---------------CCEEEEECCCCCC
T ss_conf 99998999780999999999997156----9---------------9769994777875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.96 E-value=0.011 Score=30.30 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=19.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
..+.+++||+|+||||.+--||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.96 E-value=0.021 Score=28.57 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=23.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 65201798948839999849999689999998559
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 171 iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-||. +...-.|.=+++.|+||+||||+...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.94 E-value=0.0065 Score=31.69 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4999965699985779963608977
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.012 Score=30.09 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999849999689999998559899
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.|.++++-|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.90 E-value=0.0085 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3884999965699985779963608
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
+.-+++.++|++||||||+.+-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.89 E-value=0.018 Score=28.94 Aligned_cols=23 Identities=30% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-++|+|-|.+|||||+++|++--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79997899998999999997789
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.87 E-value=0.0046 Score=32.63 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.0064 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.85 E-value=0.019 Score=28.83 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=22.7
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 65201798948839999849999689999998559
Q 000541 171 ILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 171 iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.||. +...-.|.=+++.|+||+||||+...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.85 E-value=0.011 Score=30.27 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++++|++.+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.84 E-value=0.053 Score=26.03 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
..++.++||+|+||||.+--||.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.84 E-value=0.0091 Score=30.81 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999968999999855
Q 000541 184 MTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG 204 (1433)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.80 E-value=0.0068 Score=31.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.75 E-value=0.0079 Score=31.19 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.74 E-value=0.011 Score=30.39 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0089 Score=30.87 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.74 E-value=0.011 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8388499996569998577996360897
Q 000541 871 FRPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 871 i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-.|.-.+.+.||+|.|||.|.+.|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0078 Score=31.22 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.72 E-value=0.0081 Score=31.11 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++++|.+|+|||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.71 E-value=0.0082 Score=31.07 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 38849999656999857799636089
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
+.+.++.|+||+||||||+-+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.71 E-value=0.01 Score=30.51 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.70 E-value=0.0088 Score=30.89 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.66 E-value=0.0095 Score=30.70 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.66 E-value=0.0085 Score=30.97 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 5688388499996569998577996360
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~ 895 (1433)
.|-+++|+++.|.|++|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.65 E-value=0.012 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.++|+|..+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.011 Score=30.27 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 84999965699985779963608977
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.01 Score=30.48 Aligned_cols=27 Identities=41% Similarity=0.462 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 388499996569998577996360897
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.|.+++|-|+-||||||+.+.|....
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.015 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=26.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 88399998499996899999985598999995109999795
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGH 221 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~ 221 (1433)
|....+++||+|+|||.|.+.||..+. .--|.+|..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s 86 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMS 86 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCC
T ss_conf 765899977875006999999986336-----770674154
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.54 E-value=0.012 Score=30.12 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++|+|-|.+|||||+++|.|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.54 E-value=0.012 Score=29.96 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=28.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 38849999656999857799636089779703569999694
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGY 912 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~ 912 (1433)
+.|.++-+.|.|||||||+.+.|+.+.......-.+.++|-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99869999899999989999999988777427508997536
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.54 E-value=0.028 Score=27.74 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=17.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6883884999965699985779963608
Q 000541 869 GAFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 869 ~~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
|-++.|.++-+-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.0022 Score=34.65 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|+|++|||||++.|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.012 Score=30.15 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+-...+++||+|+||||.+--||-++.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999988999999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.46 E-value=0.011 Score=30.25 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.46 E-value=0.013 Score=29.86 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-.+++++||+|+||||.+--||-++.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98999989999998999999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.011 Score=30.18 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.0095 Score=30.68 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 56883884999965699985779963608
Q 000541 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 868 s~~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.|-+++|+++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.43 E-value=0.013 Score=29.90 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4999965699985779963608977
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.011 Score=30.41 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99965699985779963608977
Q 000541 877 TALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
+.++|++||||||+-+.|+.+..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.41 E-value=0.01 Score=30.49 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=75.1
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 15688388499996569998577996360897-79703569999694188001233488961588789998889999987
Q 000541 867 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYS 945 (1433)
Q Consensus 867 vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~-~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~ 945 (1433)
+.|-+++|.++.|.|++|+|||+|..-++... ..+ ....|+.- ..+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~------e~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAY------EESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEES------SSCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEEC------CCCHHHHHHHH
T ss_conf 568986984999991899999999999999998723-------------------24411212------67999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHH
Q ss_conf 77129999993679999999999929964221213699888889888999999999-961997679829999---99999
Q 000541 946 AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDAR 1021 (1433)
Q Consensus 946 a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~-L~~~p~il~lDEPTs---GLD~~ 1021 (1433)
..+.. + . ++.. ..+.....+.. .......+.- -.|... --.+|.+++.|--+. +.+..
T Consensus 74 ~~~~~--~--~-------~~~~-~~~~~~~~~~~-----~~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWGM--D--F-------EEME-RQNLLKIVCAY-----PESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTSC--C--H-------HHHH-HTTSEEECCCC-----GGGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCCC--C--H-------HHHH-HCCCEEEEEEE-----CCHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 98299--8--6-------9985-45861799730-----0010179999-999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHCCEEEEE
Q ss_conf 8999999999987-57988999955888---------89999762055881
Q 000541 1022 AAAIVMRTVRNTV-DTGRTVVCTIHQPS---------IDIVEAFDELFLLK 1062 (1433)
Q Consensus 1022 ~a~~i~~~l~~~~-~~g~Tvi~tiHqps---------~~i~~~fd~i~ll~ 1062 (1433)
.....+..+.+.+ +.+.+++++.|... ..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.011 Score=30.25 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.015 Score=29.45 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 99998499996899999985598999995109999795078876452289972788889999999999987
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 254 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTVrEtl~f~ 254 (1433)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.+ +|-.|-...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L~ 80 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKLN 80 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---8889999985
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.39 E-value=0.0098 Score=30.61 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 838849999656999857799636089
Q 000541 871 FRPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 871 i~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
+|+. .+||+|..+||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.39 E-value=0.014 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=14.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 688388499996569998577996360
Q 000541 869 GAFRPGVLTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 869 ~~i~pG~~~ai~G~sGaGKTTLl~~L~ 895 (1433)
|-++.|.++.+.|++|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.38 E-value=0.01 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
|+.-+.+.||+|+|||.|.++||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.012 Score=29.96 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.014 Score=29.56 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.31 E-value=0.019 Score=28.80 Aligned_cols=31 Identities=45% Similarity=0.693 Sum_probs=27.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9894883999984999968999999855989
Q 000541 177 GIIRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 177 ~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|-++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.30 E-value=0.013 Score=29.90 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.018 Score=28.98 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999849999689999998559899
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.+.+++||+|+||||.+--||-++..
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 79999899999989999999999997
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.014 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.18 E-value=0.014 Score=29.61 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+|++||||||+.+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.10 E-value=0.015 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.04 E-value=0.018 Score=28.98 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.++|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.023 Score=28.25 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.01 E-value=0.031 Score=27.49 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=26.9
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 402615688388499996569998577996360897
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 863 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.015 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++++|++|+|||||++.+.+..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.00 E-value=0.024 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=18.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+||.++++-|+=||||||+.+.++.-+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.016 Score=29.25 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.016 Score=29.21 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.021 Score=28.53 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++-+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.93 E-value=0.018 Score=28.91 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.90 E-value=0.028 Score=27.75 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=26.4
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 402615688388499996569998577996360897
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 863 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.||. +...-.|.-+.++|+||+|||||...|..+-
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899-9999999999998089999899999999859
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.048 Score=26.32 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.0034 Score=33.48 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.018 Score=29.01 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.016 Score=29.22 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++||+||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.84 E-value=0.018 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.|+|++||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.84 E-value=0.022 Score=28.41 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998499996899999985
Q 000541 184 MTLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~La 203 (1433)
+++|.|++||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.81 E-value=0.0089 Score=30.87 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.81 E-value=0.019 Score=28.87 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.018 Score=29.03 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.77 E-value=0.031 Score=27.51 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.021 Score=28.50 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998499996899999985598
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.+++|+||.++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.024 Score=28.18 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999968999999855
Q 000541 184 MTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG 204 (1433)
+++|.|++||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.025 Score=28.04 Aligned_cols=35 Identities=37% Similarity=0.662 Sum_probs=27.9
Q ss_pred EEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 64026156883884999965699985779963608977
Q 000541 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 862 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.+|+.++. |=..++|+|+.++|||||||.|+|...
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99970799---879999889999979999999809987
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.019 Score=28.85 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.71 E-value=0.022 Score=28.43 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|++|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.023 Score=28.30 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.019 Score=28.85 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|++|+|||||++-+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.67 E-value=0.014 Score=29.73 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.02 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.67 E-value=0.02 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.66 E-value=0.019 Score=28.84 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.64 E-value=0.02 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++++|++++|||||+..|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.62 E-value=0.041 Score=26.74 Aligned_cols=22 Identities=50% Similarity=0.502 Sum_probs=16.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999984999968999999855
Q 000541 183 RMTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG 204 (1433)
+-++|+|+.|+|||||..+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0999994889809999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.61 E-value=0.026 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+++|-|..||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.023 Score=28.33 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++++|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.033 Score=27.32 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.52 E-value=0.02 Score=28.72 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.021 Score=28.56 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.023 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
++||-|++|||||||-+.|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.022 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999968999999855
Q 000541 184 MTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG 204 (1433)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.023 Score=28.26 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.39 E-value=0.017 Score=29.07 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499996899999985598
Q 000541 185 TLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.026 Score=28.00 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=37.3
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 997679829999--999998999999999987579889999558888999976205588169599998498867037999
Q 000541 1005 NPSIIFMDEPTS--GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIK 1082 (1433)
Q Consensus 1005 ~p~il~lDEPTs--GLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g~~~~~~~~ 1082 (1433)
.+.++++||.-. +-+......+++..+ .....++++...+....... +.+..+.+.+.++. ..++..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~---~~~~~ii~i~~~~~~~~~~~------l~~~~~~i~f~~~~--~~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERNLPKMRP------FDRVCLDIQFRRPD--ANSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTTSSTTGG------GTTTSEEEECCCCC--HHHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCC--HHHHHH
T ss_conf 51377763011111000134677765401---23422211135555211353------24403653114531--467889
Q ss_pred HHHHC
Q ss_conf 98408
Q 000541 1083 YFEGI 1087 (1433)
Q Consensus 1083 yF~~~ 1087 (1433)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.35 E-value=0.025 Score=28.07 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.34 E-value=0.025 Score=28.08 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 884999965699985779963608977
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.|.++++-|+-||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.32 E-value=0.054 Score=26.02 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-++++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=0.021 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.026 Score=28.01 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.|+||.||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.23 E-value=0.023 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+||+|-+.+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.23 E-value=0.04 Score=26.80 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=26.9
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 40261568838849999656999857799636089
Q 000541 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 863 iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
-+|. +...-.|.-+.+.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.22 E-value=0.031 Score=27.52 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
+...++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.023 Score=28.25 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998499996899999985598
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-+++|-|.-||||||||+-+....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.19 E-value=0.049 Score=26.25 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=24.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3884999965699985779963608977
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
+|.--+|++|.-.||||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.027 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.|..+++-|+-||||||+.+.|+.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.16 E-value=0.025 Score=28.13 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99767982999999999899999999998757988999955888899997620558816959999849886703799998
Q 000541 1005 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084 (1433)
Q Consensus 1005 ~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g~~~~~~~~yF 1084 (1433)
++.++++||-- .+.......+...+..- .....+++++++++. +...+. ++ ...+.+.|.. ..+...+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~l~-----sR-~~~i~~~~~~--~~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEPIQ-----SR-CAIFRFRPLR--DEDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHHHH-----HT-EEEEECCCCC--HHHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHHHH-----CC-CCCCCCCCCC--HHHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-657684-----73-1210123343--04677899
Q ss_pred HHC
Q ss_conf 408
Q 000541 1085 EGI 1087 (1433)
Q Consensus 1085 ~~~ 1087 (1433)
..+
T Consensus 178 ~~~ 180 (231)
T d1iqpa2 178 RYI 180 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 888
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.14 E-value=0.016 Score=29.27 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.025 Score=28.10 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.08 E-value=0.03 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|...||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.06 E-value=0.03 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|...||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.05 E-value=0.028 Score=27.73 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
....++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.03 Score=27.63 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.029 Score=27.64 Aligned_cols=31 Identities=39% Similarity=0.587 Sum_probs=27.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9894883999984999968999999855989
Q 000541 177 GIIRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 177 ~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|-+++|++|.+.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9966735899805777478999999999987
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.028 Score=27.74 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.92 E-value=0.022 Score=28.44 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999984999968999999
Q 000541 184 MTLLLGPPASGKTTLLLA 201 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~ 201 (1433)
-++|.|+|||||||.|-.
T Consensus 16 ~~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHH
T ss_conf 989996288438999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.84 E-value=0.041 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999849999689999998
Q 000541 184 MTLLLGPPASGKTTLLLAL 202 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~L 202 (1433)
-++|+|+.|||||||..+|
T Consensus 8 ni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
T ss_conf 9999958989989999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.84 E-value=0.038 Score=26.95 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 838849999656999857799636089
Q 000541 871 FRPGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 871 i~pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+||.+++|-|+=||||||+.+.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799829999668776588999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.031 Score=27.52 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499996899999985598
Q 000541 184 MTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
-++|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.79 E-value=0.03 Score=27.59 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.79 E-value=0.028 Score=27.75 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49999656999857799636089
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
-.++++|.+|+|||||++-+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.034 Score=27.21 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.025 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.034 Score=27.23 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.72 E-value=0.026 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=18.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 326520179894883999984999968999999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLA 201 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~ 201 (1433)
..++++. .| -++|.|++||||||.|-.
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHHHH
T ss_pred HHHHHCC-----CC-CEEEEECCCCCHHHHHHH
T ss_conf 9998299-----99-989995298668999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.72 E-value=0.037 Score=27.02 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=38.1
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCE-EEEECCCEEEEECCHHH
Q ss_conf 0798485985698899-9999999999999998822984999985491148833183-99962982999539657
Q 000541 343 VGPAQALFMDEISTGL-DSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDD-IILISDGQIVYQGPREH 415 (1433)
Q Consensus 343 ~~~~~vlllDEptsgL-Ds~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~-iivL~~G~iv~~G~~~~ 415 (1433)
....+++++|+.-.=. +......+...+.... ..++.++++-..++.+.-..-++ .--|..|-++.--|.++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 762130101126550586577889999999876-31663899548751001343267888861856899788827
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.033 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.041 Score=26.73 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
|...+.++||+|.|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.036 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.66 E-value=0.036 Score=27.13 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.036 Score=27.08 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.038 Score=26.97 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999849999689999998559
Q 000541 183 RMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
+.++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.023 Score=28.28 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.041 Score=26.75 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.046 Score=26.45 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=14.0
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 83999984999968999999
Q 000541 182 GRMTLLLGPPASGKTTLLLA 201 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~ 201 (1433)
+.++.|-||||+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.074 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.031 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.039 Score=26.89 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.44 E-value=0.029 Score=27.72 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 999965699985779963608977970356999969418800123348896158
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQN 929 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~ 929 (1433)
-+.++||+|+|||-|.+.||+.... | -+..++-. |. .+|||-.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~-----fT-eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATK-----FT-EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGG-----GC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-C---EEEEECCE-----EE-ECCEEECC
T ss_conf 4799899998899999999987389-8---89862551-----14-11111044
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.42 E-value=0.046 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 84999965699985779963608977
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
...+.|.||+|.||||+++.|+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88168889899989999999999975
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.039 Score=26.86 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99984999968999999855
Q 000541 185 TLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG 204 (1433)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.042 Score=26.68 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.038 Score=26.97 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-..++++||+|+||||.+-=||.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9799998999999899999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.38 E-value=0.04 Score=26.81 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.34 E-value=0.033 Score=27.31 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997198
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.33 E-value=0.041 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.32 E-value=0.043 Score=26.62 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8849999656999857799636089
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
|-.-+.+.||+|+|||++.++||..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.27 E-value=0.045 Score=26.51 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998499996899999985
Q 000541 184 MTLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~La 203 (1433)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.048 Score=26.31 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
=.+|+||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.043 Score=26.63 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.036 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49999656999857799636089
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
-.++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=0.033 Score=27.34 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.19 E-value=0.042 Score=26.69 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.045 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999849999689999998559899
Q 000541 183 RMTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
++.++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.10 E-value=0.046 Score=26.44 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.055 Score=25.94 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.047 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.02 E-value=0.034 Score=27.25 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.+-||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.045 Score=26.51 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.04 Score=26.83 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.++|.+|+|||||++.+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.044 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.044 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.058 Score=25.80 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 883884999965699985779963608
Q 000541 870 AFRPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 870 ~i~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.86 E-value=0.038 Score=26.97 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCC---------HHHHHHHHH-HHHHH---H-HCCCEEEEEECCCCHHHHHHHC
Q ss_conf 88999999999961997679829999999---------998999999-99998---7-5798899995588889999762
Q 000541 991 EQRKRLTIAVELVANPSIIFMDEPTSGLD---------ARAAAIVMR-TVRNT---V-DTGRTVVCTIHQPSIDIVEAFD 1056 (1433)
Q Consensus 991 GqrkRl~ia~~L~~~p~il~lDEPTsGLD---------~~~a~~i~~-~l~~~---~-~~g~Tvi~tiHqps~~i~~~fd 1056 (1433)
.++-|-.+..+-...|.|+++||--.=+. ......+.+ .+..+ . ..+.-+|+|++.|.. .|
T Consensus 86 ~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld 160 (265)
T d1r7ra3 86 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----ID 160 (265)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TS
T ss_pred HHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CC
T ss_conf 8999999999986398435687546324557876788737999999999999628677799899991799222-----79
Q ss_pred CEEEE-ECCCEEEEECCCCCC
Q ss_conf 05588-169599998498867
Q 000541 1057 ELFLL-KRGGQEIYVGSLGRH 1076 (1433)
Q Consensus 1057 ~i~ll-~~gG~~vy~G~~g~~ 1076 (1433)
.-+.= .+=.+.++++++.+.
T Consensus 161 ~al~r~gRf~~~i~~~~p~~~ 181 (265)
T d1r7ra3 161 PAILRPGRLDQLIYIPLPDEK 181 (265)
T ss_dssp CGGGSSTTSEEEEECCCCCCH
T ss_pred HHHHCCCCCCEEEEECCHHHH
T ss_conf 978078776479995660788
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.81 E-value=0.063 Score=25.59 Aligned_cols=28 Identities=46% Similarity=0.560 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4883999984999968999999855989
Q 000541 180 RPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
+|.-..+++||+|+|||.+.+.||-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.79 E-value=0.055 Score=25.96 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999849999689999998
Q 000541 185 TLLLGPPASGKTTLLLAL 202 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~L 202 (1433)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.048 Score=26.30 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999656999857799636089
Q 000541 877 TALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr 897 (1433)
++++|+.|+|||||++-+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.061 Score=25.68 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.05 Score=26.19 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=25.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894883999984999968999999855989
Q 000541 178 IIRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 178 ~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+-.|+-.+|+|++|+|||||+..++....
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 645787556867999887899999999775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.044 Score=26.56 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.049 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996569998577996360897
Q 000541 877 TALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+.+-||+|+||||+.++++...
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.052 Score=26.09 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.049 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.041 Score=26.72 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.59 E-value=0.062 Score=25.60 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999689999998559
Q 000541 184 MTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
-++++|++.+|||||++.|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.054 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.49 E-value=0.053 Score=26.06 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.46 E-value=0.038 Score=26.98 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++.|.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949999999997098
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.44 E-value=0.081 Score=24.90 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996569998577996360
Q 000541 876 LTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~ 895 (1433)
++||.|.-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.054 Score=25.99 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.40 E-value=0.052 Score=26.11 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996569998577996360
Q 000541 876 LTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~ 895 (1433)
-+||+|..|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.26 E-value=0.06 Score=25.71 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.085 Score=24.77 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
..++-||||+||||+.++++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~ 60 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNC 60 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 5988889987589999999998468
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.13 E-value=0.035 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 49999656999857799636089
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.067 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.10 E-value=0.07 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.06 E-value=0.056 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996569998577996360
Q 000541 876 LTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~ 895 (1433)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.091 Score=24.59 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-.++.||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.03 E-value=0.069 Score=25.32 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHCCCEEEEECCCCCCCHHHH------HHHHHHHHH----HH-HCCCEEEEEECCCCHHHHHHHCCEEEEEC--CCEEE
Q ss_conf 9619976798299999999989------999999999----87-57988999955888899997620558816--95999
Q 000541 1002 LVANPSIIFMDEPTSGLDARAA------AIVMRTVRN----TV-DTGRTVVCTIHQPSIDIVEAFDELFLLKR--GGQEI 1068 (1433)
Q Consensus 1002 L~~~p~il~lDEPTsGLD~~~a------~~i~~~l~~----~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~--gG~~v 1068 (1433)
--..|.|||+||-=+=+..+.. ..+...+.. .. ..+.-||+|+++|.. .|.-++ .. =.+.+
T Consensus 94 ~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i 167 (258)
T d1e32a2 94 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREV 167 (258)
T ss_dssp HHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEE
T ss_pred HHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEE
T ss_conf 86499499852111322578877770689998775001101234688117975799310-----252454-246302323
Q ss_pred EECCCCCCHHHHHHHHHHC
Q ss_conf 9849886703799998408
Q 000541 1069 YVGSLGRHSSHLIKYFEGI 1087 (1433)
Q Consensus 1069 y~G~~g~~~~~~~~yF~~~ 1087 (1433)
+++++.. ..-...|+.+
T Consensus 168 ~~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 168 DIGIPDA--TGRLEILQIH 184 (258)
T ss_dssp ECCCCCH--HHHHHHHHHT
T ss_pred ECCCCCH--HHHHHHHHHH
T ss_conf 7899998--8999873220
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.068 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.06 Score=25.73 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.068 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.++|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.79 E-value=0.079 Score=24.96 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884999965699985779963608
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
|---+|++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.76 E-value=0.079 Score=24.98 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|.+|+|||||++-+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.081 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996569998577996360
Q 000541 876 LTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~ 895 (1433)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.66 E-value=0.081 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996569998577996360
Q 000541 876 LTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~ 895 (1433)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.072 Score=25.24 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.074 Score=25.16 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99767982999999999899999999998757988999955888899997620558816959999849886703799998
Q 000541 1005 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084 (1433)
Q Consensus 1005 ~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g~~~~~~~~yF 1084 (1433)
+.+++++||.-. +...+...+...+.... ....+++++++.+. +... +.++ .+.+.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 408
Q 000541 1085 EGI 1087 (1433)
Q Consensus 1085 ~~~ 1087 (1433)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.076 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.50 E-value=0.093 Score=24.52 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.+++|+..+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.40 E-value=0.086 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.079 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++|+|.+|+|||||++.+....
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999989999999996499
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.36 E-value=0.09 Score=24.63 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.095 Score=24.49 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.13 E-value=0.075 Score=25.09 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
-.+||+|-+.+|||||+++|++-.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.96 E-value=0.1 Score=24.29 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998499996899999985
Q 000541 185 TLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~La 203 (1433)
++++|+.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.11 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+++|+||.|||++...||.+..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.93 E-value=0.08 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.93 E-value=0.06 Score=25.73 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.099 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.+.++|.+|+|||||++-+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997398
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.85 E-value=0.12 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.81 E-value=0.1 Score=24.27 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.68 E-value=0.093 Score=24.53 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99767982999999999899999999998757988999955888899997620558816959999849886703799998
Q 000541 1005 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYF 1084 (1433)
Q Consensus 1005 ~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g~~~~~~~~yF 1084 (1433)
+.+++++||.- .+.......+.+.+..... ...++++.+++. .+... +.++ ...+.+-|+.. .++..+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 71899996632-0002378999988631120-023201267087-75999-----9988-75401235652--0001102
Q ss_pred HHC
Q ss_conf 408
Q 000541 1085 EGI 1087 (1433)
Q Consensus 1085 ~~~ 1087 (1433)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=0.1 Score=24.35 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=43.5
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 19976798299999999989999999999875798899995588889999762055881695999984988670379999
Q 000541 1004 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKY 1083 (1433)
Q Consensus 1004 ~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~g~~~~~~~~y 1083 (1433)
.+.+++++||.-. |...+...+.+.+.... ....+|++++.+.. +.... .++ -..+.+-|+.. .++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~-i~~~l-----~sR-~~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP-IIAPI-----KSQ-CLLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS-SCHHH-----HTT-SEEEECCCCCH--HHHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCC-HHHHH-----HCC-HHEEEECCCCH--HHHHHH
T ss_conf 8724999424333-45431112210022135-66430001021110-02544-----210-00243035330--468999
Q ss_pred HHHC
Q ss_conf 8408
Q 000541 1084 FEGI 1087 (1433)
Q Consensus 1084 F~~~ 1087 (1433)
.+.+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.35 E-value=0.12 Score=23.77 Aligned_cols=26 Identities=46% Similarity=0.654 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
|+ -.+.+||+|+|||-|.+.||..++
T Consensus 68 ~~-niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 68 KS-NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CC-CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 75-324418998637899999986443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.1 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8499996569998577996360897
Q 000541 874 GVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 874 G~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
--.++++|.+|+|||||++-+.+..
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3799999989978999999997197
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.19 E-value=0.12 Score=23.95 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984999968999999855989
Q 000541 185 TLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+|+|+||.|||++...|+-+..
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 76879999889999999999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.12 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.03 E-value=0.1 Score=24.34 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 989488399998499996899999985598
Q 000541 177 GIIRPGRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 177 ~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
|-++.|++|.+.||+|+|||||+..++...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 986663369996488748899999999987
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.12 Score=23.90 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
++.|-|--|||||||++-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.14 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 499996569998577996360897
Q 000541 875 VLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 875 ~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.60 E-value=0.13 Score=23.62 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999656999857799636089
Q 000541 876 LTALMGVSGAGKTTLMDVLAGR 897 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr 897 (1433)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.59 E-value=0.15 Score=23.18 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999849999689999998559
Q 000541 183 RMTLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 183 ~~t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
.+++|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.15 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++++|.+|+|||||++-+....
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.49 E-value=0.15 Score=23.24 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.47 E-value=0.15 Score=23.19 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=22.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 388499996569998577996360897
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+|.....++||+|.|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.17 E-value=0.12 Score=23.92 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 884999965699985779963608977
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
.+..+.+.||+|.|||++.++|++...
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 767699989999888999999999859
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.11 E-value=0.13 Score=23.62 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998499996899999985
Q 000541 185 TLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~La 203 (1433)
++++|+.++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.89 E-value=0.14 Score=23.47 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3884999965699985779963608
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~g 896 (1433)
+|.--+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.62 E-value=0.22 Score=22.26 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=15.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 88388499996569998577996360
Q 000541 870 AFRPGVLTALMGVSGAGKTTLMDVLA 895 (1433)
Q Consensus 870 ~i~pG~~~ai~G~sGaGKTTLl~~L~ 895 (1433)
.+-.|+..+|.|++|.|||+|+.-++
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 63678877766799989899999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.54 E-value=0.16 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998499996899999985
Q 000541 185 TLLLGPPASGKTTLLLALA 203 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~La 203 (1433)
++|+|+.++|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.49 E-value=0.17 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999968999999855989
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.29 E-value=0.17 Score=22.96 Aligned_cols=49 Identities=4% Similarity=0.069 Sum_probs=34.5
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 6199767982999999-999899999999998757988999955888899
Q 000541 1003 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1051 (1433)
Q Consensus 1003 ~~~p~il~lDEPTsGL-D~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i 1051 (1433)
+.+.+++++|+--.=. +......+..++....+.|+.+|+|...|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.03 E-value=0.21 Score=22.31 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999968999999855
Q 000541 184 MTLLLGPPASGKTTLLLALAG 204 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG 204 (1433)
=++++|+.++|||||...|.-
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~ 28 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIY 28 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 799994789989999999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.91 E-value=0.18 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999689999998559899
Q 000541 184 MTLLLGPPASGKTTLLLALAGKLDS 208 (1433)
Q Consensus 184 ~t~ilGp~GsGKSTLL~~LaG~l~~ 208 (1433)
.+.|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.79 E-value=0.19 Score=22.59 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998499996899999985598
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKL 206 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l 206 (1433)
.-.+..+.||+++|||+++++|+..+
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 61799998589887789999999983
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.32 E-value=0.22 Score=22.27 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=23.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94883999984999968999999855989
Q 000541 179 IRPGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 179 i~pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
-.|+-..++.||||+|||.|.++||+...
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 36886388877998508899999999863
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.15 E-value=0.2 Score=22.50 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48839999849999689999
Q 000541 180 RPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL 199 (1433)
+.|...+..|.||+|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.10 E-value=0.23 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965699985779963608
Q 000541 876 LTALMGVSGAGKTTLMDVLAG 896 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~g 896 (1433)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.10 E-value=0.25 Score=21.88 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999689999998559
Q 000541 185 TLLLGPPASGKTTLLLALAGK 205 (1433)
Q Consensus 185 t~ilGp~GsGKSTLL~~LaG~ 205 (1433)
++++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=0.23 Score=22.11 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.5
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48839999849999689999
Q 000541 180 RPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL 199 (1433)
+.|+..+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.36 E-value=0.36 Score=20.84 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=9.8
Q ss_pred CEEEEEECCCCCCHHHHH
Q ss_conf 839999849999689999
Q 000541 182 GRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL 199 (1433)
|.+.+++||-.|||||-|
T Consensus 2 G~L~~i~GpMfsGKTteL 19 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAEL 19 (139)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHH
T ss_conf 379999915067899999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.33 E-value=0.27 Score=21.67 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996569998577996360897
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
.++|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.11 E-value=0.17 Score=22.83 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 213699888889888999999999961997679829999999998999999999987579889999558
Q 000541 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046 (1433)
Q Consensus 978 ~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHq 1046 (1433)
.++-.||.-.++++-..=+. +++-.|++.| +..|+-+.|...+..+. ..+..+++.+..
T Consensus 99 nliDtPGh~dF~~ev~~al~-----~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNK 157 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALR-----VTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINK 157 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHH-----TCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHH-----HCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 99737873889999998875-----2372499986-56682046999999998----769986999877
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.92 E-value=0.15 Score=23.23 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
-+.|.|+.|.|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.82 E-value=0.14 Score=23.46 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHHH
Q ss_conf 9488399998499996899-99-9985
Q 000541 179 IRPGRMTLLLGPPASGKTT-LL-LALA 203 (1433)
Q Consensus 179 i~pG~~t~ilGp~GsGKST-LL-~~La 203 (1433)
+++|+.++|.+|+|||||+ .+ .++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 646994999979999787999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.75 E-value=0.26 Score=21.79 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=20.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 388499996569998577996360897
Q 000541 872 RPGVLTALMGVSGAGKTTLMDVLAGRK 898 (1433)
Q Consensus 872 ~pG~~~ai~G~sGaGKTTLl~~L~gr~ 898 (1433)
+|+ -+.++||||.|||-|.+.||...
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875-32441899863789999998644
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.39 Score=20.65 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=17.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999984999968999999855989
Q 000541 181 PGRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 181 pG~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.|.+++++||-.|||||-|--.+.++.
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.80 E-value=0.2 Score=22.48 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965699985779963608977
Q 000541 876 LTALMGVSGAGKTTLMDVLAGRKT 899 (1433)
Q Consensus 876 ~~ai~G~sGaGKTTLl~~L~gr~~ 899 (1433)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.51 E-value=0.33 Score=21.14 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=17.7
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48839999849999689999
Q 000541 180 RPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 180 ~pG~~t~ilGp~GsGKSTLL 199 (1433)
+.|..++..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.07 E-value=0.27 Score=21.69 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999656999857799
Q 000541 877 TALMGVSGAGKTTLM 891 (1433)
Q Consensus 877 ~ai~G~sGaGKTTLl 891 (1433)
+.|.|+.||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
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| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=80.36 E-value=0.23 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999984999968999999855989
Q 000541 182 GRMTLLLGPPASGKTTLLLALAGKLD 207 (1433)
Q Consensus 182 G~~t~ilGp~GsGKSTLL~~LaG~l~ 207 (1433)
.....+.||+++|||++..+|+..+.
T Consensus 53 kn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 53 KNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 31899988998568999999999828
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